From 9ebcb419c90edde841ab6a3f74453678d97d96ce Mon Sep 17 00:00:00 2001 From: kozlov Date: Fri, 12 May 2017 19:47:19 +0200 Subject: [PATCH] add support for median category rates in discrete GAMMA model --- examples/heterotachy/heterotachy.c | 2 +- examples/lg4/lg4.c | 2 +- .../newick-fasta-rooted/newick-fasta-rooted.c | 2 +- .../newick-fasta-unrooted.c | 2 +- .../newick-phylip-unrooted.c | 2 +- examples/newton/newton.c | 2 +- examples/partial-traversal/partial.c | 2 +- examples/protein-list/protein-list.c | 2 +- examples/unrooted/unrooted.c | 2 +- src/gamma.c | 25 +- src/pll.h | 7 +- test/out/00030_NMDU_gamma.out | 133 +- test/out/00032_NMOU_gamma.out | 1251 ++- test/out/alpha-cats.out | 7135 ++++++++++++++++- test/src/00010_NMDU_lkcalc.c | 4 +- test/src/00011_NMAU_lkcalc.c | 2 +- test/src/00012_NMOU_lkcalc.c | 2 +- test/src/00020_NMDR_lkcalc.c | 4 +- test/src/00021_NMAR_lkcalc.c | 2 +- test/src/00022_NMOR_lkcalc.c | 4 +- test/src/00030_NMDU_gamma.c | 208 +- test/src/00032_NMOU_gamma.c | 154 +- test/src/00110_NPDN_fasta.c | 2 +- test/src/alpha-cats.c | 154 +- test/src/asc-bias.c | 2 +- test/src/derivatives-oddstates.c | 2 +- test/src/derivatives.c | 2 +- test/src/hky.c | 2 +- test/src/partial-traversal.c | 2 +- test/src/protein-models.c | 2 +- test/src/rooted-tipinner.c | 2 +- test/src/rooted.c | 2 +- test/src/scaling.c | 2 +- 33 files changed, 8441 insertions(+), 682 deletions(-) diff --git a/examples/heterotachy/heterotachy.c b/examples/heterotachy/heterotachy.c index 137170d..58f3f00 100644 --- a/examples/heterotachy/heterotachy.c +++ b/examples/heterotachy/heterotachy.c @@ -101,7 +101,7 @@ int main(int argc, char * argv[]) /* fixed rate categories */ double rate_cats[4]; - pll_compute_gamma_cats(alpha, 4, rate_cats); + pll_compute_gamma_cats(alpha, 4, rate_cats, PLL_GAMMA_RATES_MEAN); /* set frequencies to the parameter sets */ pll_set_frequencies(partition, 0, frequencies[0]); diff --git a/examples/lg4/lg4.c b/examples/lg4/lg4.c index 95fbc1d..eb09c0d 100644 --- a/examples/lg4/lg4.c +++ b/examples/lg4/lg4.c @@ -287,7 +287,7 @@ int main(int argc, char * argv[]) /* compute the discretized category rates from a gamma distribution with alpha shape 1 and store them in rate_cats */ - pll_compute_gamma_cats(1.00000, 4, rate_cats); + pll_compute_gamma_cats(1.00000, 4, rate_cats, PLL_GAMMA_RATES_MEAN); /* set rate categories */ pll_set_category_rates(partition, rate_cats); diff --git a/examples/newick-fasta-rooted/newick-fasta-rooted.c b/examples/newick-fasta-rooted/newick-fasta-rooted.c index 0c9ef51..2243a1e 100644 --- a/examples/newick-fasta-rooted/newick-fasta-rooted.c +++ b/examples/newick-fasta-rooted/newick-fasta-rooted.c @@ -288,7 +288,7 @@ int main(int argc, char * argv[]) /* compute the discretized category rates from a gamma distribution with alpha shape 1 and store them in rate_cats */ - pll_compute_gamma_cats(1, 4, rate_cats); + pll_compute_gamma_cats(1, 4, rate_cats, PLL_GAMMA_RATES_MEAN); /* set frequencies at model with index 0 (we currently have only one model) */ pll_set_frequencies(partition, 0, frequencies); diff --git a/examples/newick-fasta-unrooted/newick-fasta-unrooted.c b/examples/newick-fasta-unrooted/newick-fasta-unrooted.c index 046cd9c..4cc36b5 100644 --- a/examples/newick-fasta-unrooted/newick-fasta-unrooted.c +++ b/examples/newick-fasta-unrooted/newick-fasta-unrooted.c @@ -234,7 +234,7 @@ int main(int argc, char * argv[]) /* compute the discretized category rates from a gamma distribution with alpha shape 1 and store them in rate_cats */ - pll_compute_gamma_cats(1, 4, rate_cats); + pll_compute_gamma_cats(1, 4, rate_cats, PLL_GAMMA_RATES_MEAN); /* set frequencies at model with index 0 (we currently have only one model) */ pll_set_frequencies(partition, 0, frequencies); diff --git a/examples/newick-phylip-unrooted/newick-phylip-unrooted.c b/examples/newick-phylip-unrooted/newick-phylip-unrooted.c index 97198f4..bf5926d 100644 --- a/examples/newick-phylip-unrooted/newick-phylip-unrooted.c +++ b/examples/newick-phylip-unrooted/newick-phylip-unrooted.c @@ -220,7 +220,7 @@ int main(int argc, char * argv[]) /* compute the discretized category rates from a gamma distribution with alpha shape 1 and store them in rate_cats */ - pll_compute_gamma_cats(1, 4, rate_cats); + pll_compute_gamma_cats(1, 4, rate_cats, PLL_GAMMA_RATES_MEAN); /* set frequencies at model with index 0 (we currently have only one model) */ pll_set_frequencies(partition, 0, frequencies); diff --git a/examples/newton/newton.c b/examples/newton/newton.c index e2bf5f5..e29ee4b 100644 --- a/examples/newton/newton.c +++ b/examples/newton/newton.c @@ -132,7 +132,7 @@ int main(int argc, char * argv[]) /* discretized category rates from a gamma distribution with alpha shape 1 */ double rate_cats[RATES]; - pll_compute_gamma_cats(alpha, RATES, rate_cats); + pll_compute_gamma_cats(alpha, RATES, rate_cats, PLL_GAMMA_RATES_MEAN); /* set frequencies */ pll_set_frequencies(partition, 0, frequencies); diff --git a/examples/partial-traversal/partial.c b/examples/partial-traversal/partial.c index 2be4924..b117bec 100644 --- a/examples/partial-traversal/partial.c +++ b/examples/partial-traversal/partial.c @@ -286,7 +286,7 @@ int main(int argc, char * argv[]) /* compute the discretized category rates from a gamma distribution with alpha shape 1 and store them in rate_cats */ - pll_compute_gamma_cats(1, 4, rate_cats); + pll_compute_gamma_cats(1, 4, rate_cats, PLL_GAMMA_RATES_MEAN); /* set frequencies at model with index 0 (we currently have only one model) */ pll_set_frequencies(partition, 0, frequencies); diff --git a/examples/protein-list/protein-list.c b/examples/protein-list/protein-list.c index 89fc116..068cd5d 100644 --- a/examples/protein-list/protein-list.c +++ b/examples/protein-list/protein-list.c @@ -362,7 +362,7 @@ int main(int argc, char * argv[]) /* compute the discretized category rates from a gamma distribution with alpha shape 1 and store them in rate_cats */ - pll_compute_gamma_cats(1, 4, rate_cats); + pll_compute_gamma_cats(1, 4, rate_cats, PLL_GAMMA_RATES_MEAN); /* set rate categories */ pll_set_category_rates(partition, rate_cats); diff --git a/examples/unrooted/unrooted.c b/examples/unrooted/unrooted.c index d755c82..30d9aa9 100644 --- a/examples/unrooted/unrooted.c +++ b/examples/unrooted/unrooted.c @@ -54,7 +54,7 @@ int main(int argc, char * argv[]) /* discretized category rates from a gamma distribution with alpha shape 1 */ double rate_cats[4]; - pll_compute_gamma_cats(alpha, 4, rate_cats); + pll_compute_gamma_cats(alpha, 4, rate_cats, PLL_GAMMA_RATES_MEAN); /* set frequencies */ pll_set_frequencies(partition, 0, frequencies); diff --git a/src/gamma.c b/src/gamma.c index b0591df..106e183 100644 --- a/src/gamma.c +++ b/src/gamma.c @@ -219,7 +219,8 @@ static double PointChi2 (double prob, double v) PLL_EXPORT int pll_compute_gamma_cats(double alpha, unsigned int categories, - double * output_rates) + double * output_rates, + int rates_mode) { unsigned int i; @@ -245,7 +246,21 @@ PLL_EXPORT int pll_compute_gamma_cats(double alpha, { output_rates[0] = 1.0; } - else + else if (rates_mode == PLL_GAMMA_RATES_MEDIAN) + { + double + middle = 1.0 / (2.0 * categories), + t = 0.0; + + for(i = 0; i < categories; i++) + output_rates[i] = POINT_GAMMA((double)(i * 2 + 1) * middle, alfa, beta); + + for (i = 0; i < categories; i++) + t += output_rates[i]; + for( i = 0; i < categories; i++) + output_rates[i] *= factor / t; + } + else if (rates_mode == PLL_GAMMA_RATES_MEAN) { gammaProbs = (double *)malloc(categories * sizeof(double)); @@ -266,6 +281,12 @@ PLL_EXPORT int pll_compute_gamma_cats(double alpha, free(gammaProbs); } + else + { + pll_errno = PLL_ERROR_PARAM_INVALID; + snprintf(pll_errmsg, 200, "Invalid GAMMA disrcretization mode (%d)", rates_mode); + return PLL_FAILURE; + } return PLL_SUCCESS; } diff --git a/src/pll.h b/src/pll.h index 79d990c..a63fe53 100644 --- a/src/pll.h +++ b/src/pll.h @@ -151,6 +151,10 @@ #define PLL_UTREE_SHOW_SCALER_INDEX (1 << 3) #define PLL_UTREE_SHOW_PMATRIX_INDEX (1 << 4) +/* GAMMA discretization modes */ +#define PLL_GAMMA_RATES_MEAN 0 +#define PLL_GAMMA_RATES_MEDIAN 1 + /* structures and data types */ typedef struct pll_partition @@ -603,7 +607,8 @@ PLL_EXPORT int pll_compute_likelihood_derivatives(pll_partition_t * partition, PLL_EXPORT int pll_compute_gamma_cats(double alpha, unsigned int categories, - double * output_rates); + double * output_rates, + int rates_mode); /* functions in output.c */ diff --git a/test/out/00030_NMDU_gamma.out b/test/out/00030_NMDU_gamma.out index 1a5094c..c127167 100644 --- a/test/out/00030_NMDU_gamma.out +++ b/test/out/00030_NMDU_gamma.out @@ -1,4 +1,5 @@ -[1] P-matrix for branch length 0.100000 +[MEAN] Discrete GAMMA rates: 0.033388 0.251916 0.820268 2.894428 +[MEAN][1] P-matrix for branch length 0.100000 +0.9973 +0.0013 +0.0008 +0.0006 +0.0010 +0.9971 +0.0003 +0.0016 +0.0024 +0.0013 +0.9956 +0.0006 @@ -20,7 +21,7 @@ +0.0735 +0.2105 +0.0245 +0.6915 -[2] P-matrix for branch length 0.200000 +[MEAN][2] P-matrix for branch length 0.200000 +0.9945 +0.0026 +0.0016 +0.0013 +0.0019 +0.9942 +0.0006 +0.0032 +0.0048 +0.0026 +0.9913 +0.0013 @@ -42,7 +43,7 @@ +0.1290 +0.3228 +0.0430 +0.5052 -[3] P-matrix for branch length 1.000000 +[MEAN][3] P-matrix for branch length 1.000000 +0.9730 +0.0128 +0.0079 +0.0064 +0.0096 +0.9716 +0.0032 +0.0157 +0.0236 +0.0128 +0.9573 +0.0064 @@ -64,7 +65,7 @@ +0.2819 +0.4129 +0.0940 +0.2112 -[4] P-matrix for branch length 1.000000 +[MEAN][4] P-matrix for branch length 1.000000 +0.9730 +0.0128 +0.0079 +0.0064 +0.0096 +0.9716 +0.0032 +0.0157 +0.0236 +0.0128 +0.9573 +0.0064 @@ -86,13 +87,119 @@ +0.2819 +0.4129 +0.0940 +0.2112 -[5] CLV 5: [ {(0.00257,0.00513,0.00002,0.00639),(0.01851,0.03595,0.00085,0.04406),(0.05342,0.09749,0.00777,0.11466),(0.12799,0.19359,0.05802,0.20474)} {(0.00257,0.00193,0.00001,0.00001),(0.01833,0.01372,0.00067,0.00067),(0.05168,0.03859,0.00603,0.00596),(0.11320,0.08598,0.04323,0.04164)} {(0.00001,0.98843,0.00001,0.00004),(0.00036,0.91716,0.00036,0.00216),(0.00347,0.76334,0.00347,0.01818),(0.02958,0.44435,0.02958,0.10423)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00320,0.00000,0.00638),(0.00018,0.02224,0.00018,0.04339),(0.00173,0.05890,0.00173,0.10870),(0.01479,0.10761,0.01479,0.16309)} {(0.00000,0.00001,0.00000,0.98204),(0.00009,0.00054,0.00009,0.87323),(0.00087,0.00454,0.00087,0.65010),(0.00739,0.02606,0.00739,0.25520)} {(0.98905,0.00000,0.00002,0.00000),(0.92102,0.00021,0.00122,0.00021),(0.77001,0.00195,0.01050,0.00195),(0.43328,0.01664,0.06318,0.01664)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.98905,0.00000,0.00002,0.00000),(0.92102,0.00021,0.00122,0.00021),(0.77001,0.00195,0.01050,0.00195),(0.43328,0.01664,0.06318,0.01664)} {(0.00000,0.00001,0.00000,0.98204),(0.00009,0.00054,0.00009,0.87323),(0.00087,0.00454,0.00087,0.65010),(0.00739,0.02606,0.00739,0.25520)} {(0.00000,0.00064,0.00256,0.00000),(0.00022,0.00457,0.01788,0.00022),(0.00201,0.01286,0.04766,0.00199),(0.01441,0.02866,0.08438,0.01388)} {(0.00000,0.00001,0.00000,0.98204),(0.00009,0.00054,0.00009,0.87323),(0.00087,0.00454,0.00087,0.65010),(0.00739,0.02606,0.00739,0.25520)} ] -[6] CLV 6: [ {(0.00256,0.00001,0.00000,0.00001),(0.01794,0.00051,0.00006,0.00062),(0.04814,0.00426,0.00150,0.00491),(0.08848,0.02407,0.02257,0.02491)} {(0.00257,0.00192,0.00002,0.00002),(0.01809,0.01356,0.00111,0.00110),(0.04974,0.03745,0.00955,0.00939),(0.10327,0.08227,0.05863,0.05627)} {(0.00000,0.97983,0.00000,0.00002),(0.00018,0.85943,0.00018,0.00111),(0.00159,0.62277,0.00159,0.00974),(0.01271,0.24525,0.01271,0.05440)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00001,0.00000,0.00630),(0.00001,0.00052,0.00001,0.03969),(0.00015,0.00397,0.00015,0.08206),(0.00268,0.01684,0.00268,0.06915)} {(0.00063,0.00000,0.00000,0.00190),(0.00414,0.00016,0.00015,0.01209),(0.00958,0.00124,0.00112,0.02575),(0.01406,0.00624,0.00537,0.02356)} {(0.00159,0.00000,0.00240,0.00000),(0.01052,0.00003,0.01656,0.00003),(0.02462,0.00029,0.04215,0.00029),(0.02950,0.00208,0.05695,0.00208)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00255,0.00096,0.00001,0.00001),(0.01723,0.00659,0.00034,0.00032),(0.04245,0.01717,0.00307,0.00265),(0.06056,0.03226,0.01996,0.01563)} {(0.00000,0.00001,0.00000,0.96877),(0.00004,0.00025,0.00004,0.78869),(0.00032,0.00189,0.00032,0.47004),(0.00184,0.00780,0.00184,0.09229)} {(0.00000,0.00064,0.00001,0.00000),(0.00001,0.00433,0.00033,0.00002),(0.00019,0.01091,0.00255,0.00042),(0.00336,0.01828,0.01104,0.00606)} {(0.00000,0.00001,0.00000,0.96877),(0.00004,0.00025,0.00004,0.78869),(0.00032,0.00189,0.00032,0.47004),(0.00184,0.00780,0.00184,0.09229)} ] -[7] CLV 7: [ {(0.00001,0.98843,0.00001,0.00004),(0.00036,0.91716,0.00036,0.00216),(0.00347,0.76334,0.00347,0.01818),(0.02958,0.44435,0.02958,0.10423)} {(0.00129,0.00001,0.00001,0.00192),(0.00916,0.00033,0.00033,0.01338),(0.02584,0.00298,0.00302,0.03561),(0.05660,0.02082,0.02161,0.06516)} {(0.00001,0.98843,0.00001,0.00004),(0.00036,0.91716,0.00036,0.00216),(0.00347,0.76334,0.00347,0.01818),(0.02958,0.44435,0.02958,0.10423)} {(0.00129,0.00322,0.00129,0.99098),(0.00955,0.02322,0.00955,0.93447),(0.02945,0.06741,0.02945,0.80629),(0.08599,0.16142,0.08599,0.50517)} {(0.00000,0.00001,0.00000,0.98204),(0.00009,0.00054,0.00009,0.87323),(0.00087,0.00454,0.00087,0.65010),(0.00739,0.02606,0.00739,0.25520)} {(0.00257,0.00193,0.00001,0.00001),(0.01833,0.01372,0.00067,0.00067),(0.05168,0.03859,0.00603,0.00596),(0.11320,0.08598,0.04323,0.04164)} {(0.98905,0.00000,0.00002,0.00000),(0.92102,0.00021,0.00122,0.00021),(0.77001,0.00195,0.01050,0.00195),(0.43328,0.01664,0.06318,0.01664)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.98905,0.00000,0.00002,0.00000),(0.92102,0.00021,0.00122,0.00021),(0.77001,0.00195,0.01050,0.00195),(0.43328,0.01664,0.06318,0.01664)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00320,0.00000,0.00638),(0.00018,0.02224,0.00018,0.04339),(0.00173,0.05890,0.00173,0.10870),(0.01479,0.10761,0.01479,0.16309)} {(0.00000,0.00000,0.98266,0.00000),(0.00014,0.00002,0.87680,0.00002),(0.00117,0.00022,0.65480,0.00022),(0.00702,0.00185,0.24075,0.00185)} ] +[MEAN][5] CLV 5: [ {(0.00257,0.00513,0.00002,0.00639),(0.01851,0.03595,0.00085,0.04406),(0.05342,0.09749,0.00777,0.11466),(0.12799,0.19359,0.05802,0.20474)} {(0.00257,0.00193,0.00001,0.00001),(0.01833,0.01372,0.00067,0.00067),(0.05168,0.03859,0.00603,0.00596),(0.11320,0.08598,0.04323,0.04164)} {(0.00001,0.98843,0.00001,0.00004),(0.00036,0.91716,0.00036,0.00216),(0.00347,0.76334,0.00347,0.01818),(0.02958,0.44435,0.02958,0.10423)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00320,0.00000,0.00638),(0.00018,0.02224,0.00018,0.04339),(0.00173,0.05890,0.00173,0.10870),(0.01479,0.10761,0.01479,0.16309)} {(0.00000,0.00001,0.00000,0.98204),(0.00009,0.00054,0.00009,0.87323),(0.00087,0.00454,0.00087,0.65010),(0.00739,0.02606,0.00739,0.25520)} {(0.98905,0.00000,0.00002,0.00000),(0.92102,0.00021,0.00122,0.00021),(0.77001,0.00195,0.01050,0.00195),(0.43328,0.01664,0.06318,0.01664)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.98905,0.00000,0.00002,0.00000),(0.92102,0.00021,0.00122,0.00021),(0.77001,0.00195,0.01050,0.00195),(0.43328,0.01664,0.06318,0.01664)} {(0.00000,0.00001,0.00000,0.98204),(0.00009,0.00054,0.00009,0.87323),(0.00087,0.00454,0.00087,0.65010),(0.00739,0.02606,0.00739,0.25520)} {(0.00000,0.00064,0.00256,0.00000),(0.00022,0.00457,0.01788,0.00022),(0.00201,0.01286,0.04766,0.00199),(0.01441,0.02866,0.08438,0.01388)} {(0.00000,0.00001,0.00000,0.98204),(0.00009,0.00054,0.00009,0.87323),(0.00087,0.00454,0.00087,0.65010),(0.00739,0.02606,0.00739,0.25520)} ] -inner-inner logL: -58.887310 -persite logL: -6.1622140 -6.9407523 -1.4797267 -1.6094379 -5.2773906 -8.1327377 -5.7500211 -0.0000000 -5.1947970 -2.1438344 -8.0304760 -8.1659221 -checksum logL: -58.887310 -tip-inner logL: -58.887310 -persite logL: -6.1622140 -6.9407523 -1.4797267 -1.6094379 -5.2773906 -8.1327377 -5.7500211 -0.0000000 -5.1947970 -2.1438344 -8.0304760 -8.1659221 -checksum logL: -58.887310 +[MEAN][6] CLV 6: [ {(0.00256,0.00001,0.00000,0.00001),(0.01794,0.00051,0.00006,0.00062),(0.04814,0.00426,0.00150,0.00491),(0.08848,0.02407,0.02257,0.02491)} {(0.00257,0.00192,0.00002,0.00002),(0.01809,0.01356,0.00111,0.00110),(0.04974,0.03745,0.00955,0.00939),(0.10327,0.08227,0.05863,0.05627)} {(0.00000,0.97983,0.00000,0.00002),(0.00018,0.85943,0.00018,0.00111),(0.00159,0.62277,0.00159,0.00974),(0.01271,0.24525,0.01271,0.05440)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00001,0.00000,0.00630),(0.00001,0.00052,0.00001,0.03969),(0.00015,0.00397,0.00015,0.08206),(0.00268,0.01684,0.00268,0.06915)} {(0.00063,0.00000,0.00000,0.00190),(0.00414,0.00016,0.00015,0.01209),(0.00958,0.00124,0.00112,0.02575),(0.01406,0.00624,0.00537,0.02356)} {(0.00159,0.00000,0.00240,0.00000),(0.01052,0.00003,0.01656,0.00003),(0.02462,0.00029,0.04215,0.00029),(0.02950,0.00208,0.05695,0.00208)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00255,0.00096,0.00001,0.00001),(0.01723,0.00659,0.00034,0.00032),(0.04245,0.01717,0.00307,0.00265),(0.06056,0.03226,0.01996,0.01563)} {(0.00000,0.00001,0.00000,0.96877),(0.00004,0.00025,0.00004,0.78869),(0.00032,0.00189,0.00032,0.47004),(0.00184,0.00780,0.00184,0.09229)} {(0.00000,0.00064,0.00001,0.00000),(0.00001,0.00433,0.00033,0.00002),(0.00019,0.01091,0.00255,0.00042),(0.00336,0.01828,0.01104,0.00606)} {(0.00000,0.00001,0.00000,0.96877),(0.00004,0.00025,0.00004,0.78869),(0.00032,0.00189,0.00032,0.47004),(0.00184,0.00780,0.00184,0.09229)} ] + +[MEAN][7] CLV 7: [ {(0.00001,0.98843,0.00001,0.00004),(0.00036,0.91716,0.00036,0.00216),(0.00347,0.76334,0.00347,0.01818),(0.02958,0.44435,0.02958,0.10423)} {(0.00129,0.00001,0.00001,0.00192),(0.00916,0.00033,0.00033,0.01338),(0.02584,0.00298,0.00302,0.03561),(0.05660,0.02082,0.02161,0.06516)} {(0.00001,0.98843,0.00001,0.00004),(0.00036,0.91716,0.00036,0.00216),(0.00347,0.76334,0.00347,0.01818),(0.02958,0.44435,0.02958,0.10423)} {(0.00129,0.00322,0.00129,0.99098),(0.00955,0.02322,0.00955,0.93447),(0.02945,0.06741,0.02945,0.80629),(0.08599,0.16142,0.08599,0.50517)} {(0.00000,0.00001,0.00000,0.98204),(0.00009,0.00054,0.00009,0.87323),(0.00087,0.00454,0.00087,0.65010),(0.00739,0.02606,0.00739,0.25520)} {(0.00257,0.00193,0.00001,0.00001),(0.01833,0.01372,0.00067,0.00067),(0.05168,0.03859,0.00603,0.00596),(0.11320,0.08598,0.04323,0.04164)} {(0.98905,0.00000,0.00002,0.00000),(0.92102,0.00021,0.00122,0.00021),(0.77001,0.00195,0.01050,0.00195),(0.43328,0.01664,0.06318,0.01664)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.98905,0.00000,0.00002,0.00000),(0.92102,0.00021,0.00122,0.00021),(0.77001,0.00195,0.01050,0.00195),(0.43328,0.01664,0.06318,0.01664)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00320,0.00000,0.00638),(0.00018,0.02224,0.00018,0.04339),(0.00173,0.05890,0.00173,0.10870),(0.01479,0.10761,0.01479,0.16309)} {(0.00000,0.00000,0.98266,0.00000),(0.00014,0.00002,0.87680,0.00002),(0.00117,0.00022,0.65480,0.00022),(0.00702,0.00185,0.24075,0.00185)} ] + +[MEAN] inner-inner logL: -58.887310 +[MEAN] persite logL: -6.1622140 -6.9407523 -1.4797267 -1.6094379 -5.2773906 -8.1327377 -5.7500211 -0.0000000 -5.1947970 -2.1438344 -8.0304760 -8.1659221 +[MEAN] checksum logL: -58.887310 +[MEAN] tip-inner logL: -58.887310 +[MEAN] persite logL: -6.1622140 -6.9407523 -1.4797267 -1.6094379 -5.2773906 -8.1327377 -5.7500211 -0.0000000 -5.1947970 -2.1438344 -8.0304760 -8.1659221 +[MEAN] checksum logL: -58.887310 + +[MEDIAN] Discrete GAMMA rates: 0.029078 0.280715 0.924773 2.765435 +[MEDIAN][1] P-matrix for branch length 0.100000 ++0.9976 +0.0011 +0.0007 +0.0006 ++0.0008 +0.9975 +0.0003 +0.0014 ++0.0021 +0.0011 +0.9962 +0.0006 ++0.0008 +0.0028 +0.0003 +0.9961 + ++0.9772 +0.0108 +0.0066 +0.0054 ++0.0081 +0.9760 +0.0027 +0.0132 ++0.0199 +0.0108 +0.9640 +0.0054 ++0.0081 +0.0265 +0.0027 +0.9628 + ++0.9279 +0.0343 +0.0206 +0.0172 ++0.0258 +0.9248 +0.0086 +0.0408 ++0.0617 +0.0343 +0.8868 +0.0172 ++0.0258 +0.0817 +0.0086 +0.8840 + ++0.8067 +0.0942 +0.0520 +0.0471 ++0.0706 +0.8040 +0.0235 +0.1018 ++0.1560 +0.0942 +0.7028 +0.0471 ++0.0706 +0.2036 +0.0235 +0.7022 + + +[MEDIAN][2] P-matrix for branch length 0.200000 ++0.9952 +0.0023 +0.0014 +0.0011 ++0.0017 +0.9949 +0.0006 +0.0028 ++0.0042 +0.0023 +0.9924 +0.0011 ++0.0017 +0.0056 +0.0006 +0.9921 + ++0.9552 +0.0212 +0.0129 +0.0106 ++0.0159 +0.9531 +0.0053 +0.0257 ++0.0388 +0.0212 +0.9294 +0.0106 ++0.0159 +0.0514 +0.0053 +0.9273 + ++0.8636 +0.0657 +0.0378 +0.0329 ++0.0493 +0.8598 +0.0164 +0.0744 ++0.1133 +0.0657 +0.7881 +0.0329 ++0.0493 +0.1489 +0.0164 +0.7854 + ++0.6689 +0.1662 +0.0818 +0.0831 ++0.1246 +0.6760 +0.0415 +0.1578 ++0.2454 +0.1662 +0.5053 +0.0831 ++0.1246 +0.3155 +0.0415 +0.5183 + + +[MEDIAN][3] P-matrix for branch length 1.000000 ++0.9764 +0.0111 +0.0069 +0.0056 ++0.0084 +0.9752 +0.0028 +0.0137 ++0.0206 +0.0111 +0.9627 +0.0056 ++0.0084 +0.0274 +0.0028 +0.9615 + ++0.8043 +0.0954 +0.0526 +0.0477 ++0.0716 +0.8017 +0.0239 +0.1029 ++0.1577 +0.0954 +0.6992 +0.0477 ++0.0716 +0.2058 +0.0239 +0.6987 + ++0.5428 +0.2370 +0.1017 +0.1185 ++0.1778 +0.5692 +0.0593 +0.1938 ++0.3050 +0.2370 +0.3394 +0.1185 ++0.1778 +0.3876 +0.0593 +0.3754 + ++0.3341 +0.3727 +0.1068 +0.1864 ++0.2795 +0.4202 +0.0932 +0.2071 ++0.3205 +0.3727 +0.1205 +0.1864 ++0.2795 +0.4141 +0.0932 +0.2132 + + +[MEDIAN][4] P-matrix for branch length 1.000000 ++0.9764 +0.0111 +0.0069 +0.0056 ++0.0084 +0.9752 +0.0028 +0.0137 ++0.0206 +0.0111 +0.9627 +0.0056 ++0.0084 +0.0274 +0.0028 +0.9615 + ++0.8043 +0.0954 +0.0526 +0.0477 ++0.0716 +0.8017 +0.0239 +0.1029 ++0.1577 +0.0954 +0.6992 +0.0477 ++0.0716 +0.2058 +0.0239 +0.6987 + ++0.5428 +0.2370 +0.1017 +0.1185 ++0.1778 +0.5692 +0.0593 +0.1938 ++0.3050 +0.2370 +0.3394 +0.1185 ++0.1778 +0.3876 +0.0593 +0.3754 + ++0.3341 +0.3727 +0.1068 +0.1864 ++0.2795 +0.4202 +0.0932 +0.2071 ++0.3205 +0.3727 +0.1205 +0.1864 ++0.2795 +0.4141 +0.0932 +0.2132 + + +[MEDIAN][5] CLV 5: [ {(0.00224,0.00447,0.00001,0.00558),(0.02050,0.03968,0.00105,0.04852),(0.05894,0.10640,0.00961,0.12427),(0.12498,0.19092,0.05459,0.20286)} {(0.00224,0.00168,0.00001,0.00001),(0.02027,0.01517,0.00082,0.00082),(0.05678,0.04240,0.00745,0.00734),(0.11117,0.08427,0.04078,0.03933)} {(0.00001,0.98991,0.00001,0.00003),(0.00045,0.90832,0.00045,0.00265),(0.00432,0.73928,0.00432,0.02217),(0.02762,0.45703,0.02762,0.09956)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00279,0.00000,0.00557),(0.00023,0.02451,0.00023,0.04770),(0.00216,0.06400,0.00216,0.11693),(0.01381,0.10666,0.01381,0.16353)} {(0.00000,0.00001,0.00000,0.98433),(0.00011,0.00066,0.00011,0.85996),(0.00108,0.00554,0.00108,0.61681),(0.00691,0.02489,0.00691,0.26860)} {(0.99046,0.00000,0.00002,0.00000),(0.91250,0.00025,0.00150,0.00025),(0.74581,0.00243,0.01284,0.00243),(0.44744,0.01554,0.06022,0.01554)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99046,0.00000,0.00002,0.00000),(0.91250,0.00025,0.00150,0.00025),(0.74581,0.00243,0.01284,0.00243),(0.44744,0.01554,0.06022,0.01554)} {(0.00000,0.00001,0.00000,0.98433),(0.00011,0.00066,0.00011,0.85996),(0.00108,0.00554,0.00108,0.61681),(0.00691,0.02489,0.00691,0.26860)} {(0.00000,0.00056,0.00224,0.00000),(0.00027,0.00506,0.01972,0.00027),(0.00248,0.01413,0.05181,0.00245),(0.01359,0.02809,0.08398,0.01311)} {(0.00000,0.00001,0.00000,0.98433),(0.00011,0.00066,0.00011,0.85996),(0.00108,0.00554,0.00108,0.61681),(0.00691,0.02489,0.00691,0.26860)} ] + +[MEDIAN][6] CLV 6: [ {(0.00224,0.00001,0.00000,0.00001),(0.01980,0.00063,0.00008,0.00076),(0.05240,0.00518,0.00203,0.00592),(0.08776,0.02297,0.02096,0.02386)} {(0.00224,0.00168,0.00002,0.00002),(0.01998,0.01498,0.00136,0.00136),(0.05442,0.04104,0.01169,0.01148),(0.10159,0.08057,0.05579,0.05359)} {(0.00000,0.98241,0.00000,0.00002),(0.00022,0.84495,0.00022,0.00137),(0.00196,0.58876,0.00196,0.01193),(0.01188,0.25702,0.01188,0.05224)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00001,0.00000,0.00551),(0.00001,0.00063,0.00001,0.04319),(0.00021,0.00477,0.00021,0.08534),(0.00246,0.01636,0.00246,0.07144)} {(0.00055,0.00000,0.00000,0.00166),(0.00453,0.00019,0.00018,0.01318),(0.01020,0.00150,0.00134,0.02691),(0.01400,0.00598,0.00513,0.02422)} {(0.00139,0.00000,0.00209,0.00000),(0.01152,0.00004,0.01823,0.00004),(0.02616,0.00036,0.04535,0.00036),(0.02996,0.00196,0.05775,0.00196)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00223,0.00084,0.00000,0.00000),(0.01892,0.00726,0.00042,0.00039),(0.04553,0.01863,0.00378,0.00323),(0.06088,0.03184,0.01900,0.01486)} {(0.00000,0.00000,0.00000,0.97274),(0.00005,0.00031,0.00005,0.76780),(0.00039,0.00226,0.00039,0.42861),(0.00174,0.00757,0.00174,0.10072)} {(0.00000,0.00056,0.00001,0.00000),(0.00001,0.00476,0.00040,0.00002),(0.00026,0.01176,0.00307,0.00057),(0.00309,0.01816,0.01070,0.00564)} {(0.00000,0.00000,0.00000,0.97274),(0.00005,0.00031,0.00005,0.76780),(0.00039,0.00226,0.00039,0.42861),(0.00174,0.00757,0.00174,0.10072)} ] + +[MEDIAN][7] CLV 7: [ {(0.00001,0.98991,0.00001,0.00003),(0.00045,0.90832,0.00045,0.00265),(0.00432,0.73928,0.00432,0.02217),(0.02762,0.45703,0.02762,0.09956)} {(0.00112,0.00000,0.00000,0.00168),(0.01013,0.00041,0.00041,0.01476),(0.02839,0.00367,0.00373,0.03873),(0.05558,0.01967,0.02039,0.06460)} {(0.00001,0.98991,0.00001,0.00003),(0.00045,0.90832,0.00045,0.00265),(0.00432,0.73928,0.00432,0.02217),(0.02762,0.45703,0.02762,0.09956)} {(0.00113,0.00281,0.00113,0.99214),(0.01061,0.02572,0.01061,0.92734),(0.03287,0.07444,0.03287,0.78537),(0.08310,0.15777,0.08310,0.51827)} {(0.00000,0.00001,0.00000,0.98433),(0.00011,0.00066,0.00011,0.85996),(0.00108,0.00554,0.00108,0.61681),(0.00691,0.02489,0.00691,0.26860)} {(0.00224,0.00168,0.00001,0.00001),(0.02027,0.01517,0.00082,0.00082),(0.05678,0.04240,0.00745,0.00734),(0.11117,0.08427,0.04078,0.03933)} {(0.99046,0.00000,0.00002,0.00000),(0.91250,0.00025,0.00150,0.00025),(0.74581,0.00243,0.01284,0.00243),(0.44744,0.01554,0.06022,0.01554)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99046,0.00000,0.00002,0.00000),(0.91250,0.00025,0.00150,0.00025),(0.74581,0.00243,0.01284,0.00243),(0.44744,0.01554,0.06022,0.01554)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00279,0.00000,0.00557),(0.00023,0.02451,0.00023,0.04770),(0.00216,0.06400,0.00216,0.11693),(0.01381,0.10666,0.01381,0.16353)} {(0.00000,0.00000,0.98488,0.00000),(0.00017,0.00003,0.86379,0.00003),(0.00143,0.00027,0.62103,0.00027),(0.00669,0.00173,0.25534,0.00173)} ] + +[MEDIAN] inner-inner logL: -58.770643 +[MEDIAN] persite logL: -6.1427884 -6.9489336 -1.5024934 -1.6094379 -5.2628707 -8.1164519 -5.7110281 -0.0000000 -5.1565451 -2.1652071 -8.0078758 -8.1470110 +[MEDIAN] checksum logL: -58.770643 +[MEDIAN] tip-inner logL: -58.770643 +[MEDIAN] persite logL: -6.1427884 -6.9489336 -1.5024934 -1.6094379 -5.2628707 -8.1164519 -5.7110281 -0.0000000 -5.1565451 -2.1652071 -8.0078758 -8.1470110 +[MEDIAN] checksum logL: -58.770643 + +logL MEAN: -58.887310, logL MEDIAN: -58.770643 diff --git a/test/out/00032_NMOU_gamma.out b/test/out/00032_NMOU_gamma.out index 1fcf70f..dc929f5 100644 --- a/test/out/00032_NMOU_gamma.out +++ b/test/out/00032_NMOU_gamma.out @@ -4,7 +4,7 @@ Subst params: 0.50000 2.00000 3.00000 4.00000 5.00000 1.10000 1.20000 - TEST alpha(ncats) = 0.10( 1) + TEST alpha(ncats) = 0.10( 1), mode = MEAN Rates: 1.00000 [0] P-matrix for branch length 0.100000 @@ -52,7 +52,55 @@ Rates: 1.00000 [0] CLV 7: [ {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} {(0.0273,0.0001,0.0007,0.0295,0.0017,0.0022,0.0006)} {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0006,0.0209,0.0007,0.0010,0.0170,0.0012,0.0017)} {(0.0021,0.0004,0.0010,0.0377,0.0275,0.0019,0.0020)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0226,0.0001,0.0219,0.0012,0.0016,0.0020,0.0006)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.0006,0.0209,0.0007,0.0010,0.0170,0.0012,0.0017)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.0010,0.0003,0.0217,0.0242,0.0011,0.0012,0.0013)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} ] - TEST alpha(ncats) = 1.25( 1) + TEST alpha(ncats) = 0.10( 1), mode = MEDIAN + +Rates: 1.00000 +[0] P-matrix for branch length 0.100000 ++0.8844 +0.0046 +0.0151 +0.0187 +0.0333 +0.0358 +0.0081 ++0.0039 +0.9403 +0.0092 +0.0084 +0.0123 +0.0113 +0.0145 ++0.0139 +0.0100 +0.9075 +0.0139 +0.0198 +0.0178 +0.0171 ++0.0204 +0.0107 +0.0165 +0.8807 +0.0262 +0.0234 +0.0222 ++0.0266 +0.0115 +0.0172 +0.0192 +0.8774 +0.0247 +0.0234 ++0.0331 +0.0122 +0.0178 +0.0198 +0.0286 +0.8812 +0.0075 ++0.0081 +0.0169 +0.0185 +0.0203 +0.0292 +0.0081 +0.8987 + + +[0] P-matrix for branch length 0.200000 ++0.7850 +0.0097 +0.0288 +0.0347 +0.0608 +0.0649 +0.0163 ++0.0083 +0.8849 +0.0180 +0.0163 +0.0236 +0.0215 +0.0274 ++0.0265 +0.0193 +0.8250 +0.0263 +0.0373 +0.0334 +0.0321 ++0.0379 +0.0208 +0.0311 +0.7777 +0.0485 +0.0431 +0.0409 ++0.0486 +0.0221 +0.0323 +0.0356 +0.7731 +0.0455 +0.0428 ++0.0599 +0.0231 +0.0334 +0.0365 +0.0525 +0.7793 +0.0152 ++0.0163 +0.0320 +0.0347 +0.0375 +0.0535 +0.0165 +0.8095 + + +[0] P-matrix for branch length 1.000000 ++0.3514 +0.0553 +0.0992 +0.1027 +0.1595 +0.1600 +0.0719 ++0.0474 +0.5627 +0.0712 +0.0629 +0.0881 +0.0765 +0.0911 ++0.0915 +0.0767 +0.4179 +0.0869 +0.1206 +0.1059 +0.1003 ++0.1120 +0.0801 +0.1027 +0.3281 +0.1401 +0.1227 +0.1143 ++0.1276 +0.0822 +0.1046 +0.1028 +0.3403 +0.1267 +0.1158 ++0.1477 +0.0824 +0.1059 +0.1038 +0.1462 +0.3436 +0.0704 ++0.0719 +0.1063 +0.1087 +0.1048 +0.1448 +0.0763 +0.3873 + + +[0] P-matrix for branch length 1.000000 ++0.3514 +0.0553 +0.0992 +0.1027 +0.1595 +0.1600 +0.0719 ++0.0474 +0.5627 +0.0712 +0.0629 +0.0881 +0.0765 +0.0911 ++0.0915 +0.0767 +0.4179 +0.0869 +0.1206 +0.1059 +0.1003 ++0.1120 +0.0801 +0.1027 +0.3281 +0.1401 +0.1227 +0.1143 ++0.1276 +0.0822 +0.1046 +0.1028 +0.3403 +0.1267 +0.1158 ++0.1477 +0.0824 +0.1059 +0.1038 +0.1462 +0.3436 +0.0704 ++0.0719 +0.1063 +0.1087 +0.1048 +0.1448 +0.0763 +0.3873 + + +[0] CLV 5: [ {(0.00028,0.01589,0.01595,0.00065,0.00071,0.00077,0.00111)} {(0.61615,0.00007,0.00070,0.00144,0.00236,0.00359,0.00026)} {(0.02257,0.00015,0.02190,0.00118,0.00157,0.00200,0.00056)} {(0.00083,0.00032,0.68061,0.00097,0.00104,0.00112,0.00121)} {(0.02726,0.00013,0.00070,0.02946,0.00173,0.00219,0.00061)} {(0.00028,0.01589,0.01595,0.00065,0.00071,0.00077,0.00111)} {(0.00421,0.00046,0.00112,0.00186,0.00207,0.60730,0.00027)} {(0.00083,0.00032,0.68061,0.00097,0.00104,0.00112,0.00121)} {(0.00034,0.01443,0.00051,0.01614,0.00078,0.00084,0.00120)} {(0.61615,0.00007,0.00070,0.00144,0.00236,0.00359,0.00026)} {(0.96775,0.94590,0.93688,0.91992,0.91619,0.96986,0.03627)} {(0.96775,0.94590,0.93688,0.91992,0.91619,0.96986,0.03627)} {(0.00758,0.00732,0.00051,0.00079,0.00107,0.00139,0.00052)} {(0.00220,0.00056,0.02242,0.62905,0.00241,0.00255,0.00271)} {(0.00220,0.00056,0.02242,0.62905,0.00241,0.00255,0.00271)} {(0.00187,0.00039,0.02758,0.00134,0.00147,0.02606,0.00057)} {(0.00369,0.00056,0.00139,0.00235,0.59766,0.00276,0.00287)} {(0.02257,0.00015,0.02190,0.00118,0.00157,0.00200,0.00056)} {(0.02726,0.00013,0.00070,0.02946,0.00173,0.00219,0.00061)} {(0.02726,0.00013,0.00070,0.02946,0.00173,0.00219,0.00061)} ] +[0] CLV 6: [ {(0.00050,0.00013,0.00039,0.00004,0.00006,0.00007,0.00003)} {(0.03537,0.00006,0.00031,0.00060,0.00085,0.01842,0.00009)} {(0.02011,0.00048,0.01963,0.00188,0.00234,0.00293,0.00023)} {(0.00032,0.00012,0.50961,0.00038,0.00041,0.00044,0.00048)} {(0.02441,0.00053,0.00146,0.02554,0.00277,0.00342,0.00028)} {(0.00002,0.00027,0.01212,0.00003,0.00004,0.00004,0.00006)} {(0.00166,0.00016,0.00040,0.00069,0.00078,0.41723,0.00009)} {(0.00032,0.00012,0.50961,0.00038,0.00041,0.00044,0.00048)} {(0.00058,0.00011,0.00002,0.00055,0.00006,0.00008,0.00003)} {(0.03537,0.00006,0.00031,0.00060,0.00085,0.01842,0.00009)} {(0.94153,0.90681,0.89236,0.86601,0.86058,0.94483,0.02423)} {(0.94153,0.90681,0.89236,0.86601,0.86058,0.94483,0.02423)} {(0.00020,0.00013,0.00059,0.00003,0.00004,0.00005,0.00003)} {(0.00092,0.00013,0.00098,0.02392,0.00067,0.01189,0.00026)} {(0.00086,0.00015,0.00109,0.02690,0.01143,0.00080,0.00084)} {(0.00009,0.00002,0.02111,0.00007,0.00008,0.00079,0.00005)} {(0.00142,0.00019,0.00049,0.00087,0.40563,0.00104,0.00108)} {(0.01605,0.00000,0.00054,0.00007,0.00012,0.00018,0.00002)} {(0.00071,0.00001,0.00125,0.00083,0.00009,0.00012,0.00005)} {(0.00071,0.00001,0.00125,0.00083,0.00009,0.00012,0.00005)} ] +[0] CLV 7: [ {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} {(0.0273,0.0001,0.0007,0.0295,0.0017,0.0022,0.0006)} {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0006,0.0209,0.0007,0.0010,0.0170,0.0012,0.0017)} {(0.0021,0.0004,0.0010,0.0377,0.0275,0.0019,0.0020)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0226,0.0001,0.0219,0.0012,0.0016,0.0020,0.0006)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.0006,0.0209,0.0007,0.0010,0.0170,0.0012,0.0017)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.0010,0.0003,0.0217,0.0242,0.0011,0.0012,0.0013)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} ] + + + TEST alpha(ncats) = 1.25( 1), mode = MEAN Rates: 1.00000 [1] P-matrix for branch length 0.100000 @@ -100,7 +148,103 @@ Rates: 1.00000 [1] CLV 7: [ {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} {(0.0273,0.0001,0.0007,0.0295,0.0017,0.0022,0.0006)} {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0006,0.0209,0.0007,0.0010,0.0170,0.0012,0.0017)} {(0.0021,0.0004,0.0010,0.0377,0.0275,0.0019,0.0020)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0226,0.0001,0.0219,0.0012,0.0016,0.0020,0.0006)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.0006,0.0209,0.0007,0.0010,0.0170,0.0012,0.0017)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.0010,0.0003,0.0217,0.0242,0.0011,0.0012,0.0013)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} ] - TEST alpha(ncats) = 100.00( 1) + TEST alpha(ncats) = 1.25( 1), mode = MEDIAN + +Rates: 1.00000 +[1] P-matrix for branch length 0.100000 ++0.8844 +0.0046 +0.0151 +0.0187 +0.0333 +0.0358 +0.0081 ++0.0039 +0.9403 +0.0092 +0.0084 +0.0123 +0.0113 +0.0145 ++0.0139 +0.0100 +0.9075 +0.0139 +0.0198 +0.0178 +0.0171 ++0.0204 +0.0107 +0.0165 +0.8807 +0.0262 +0.0234 +0.0222 ++0.0266 +0.0115 +0.0172 +0.0192 +0.8774 +0.0247 +0.0234 ++0.0331 +0.0122 +0.0178 +0.0198 +0.0286 +0.8812 +0.0075 ++0.0081 +0.0169 +0.0185 +0.0203 +0.0292 +0.0081 +0.8987 + + +[1] P-matrix for branch length 0.200000 ++0.7850 +0.0097 +0.0288 +0.0347 +0.0608 +0.0649 +0.0163 ++0.0083 +0.8849 +0.0180 +0.0163 +0.0236 +0.0215 +0.0274 ++0.0265 +0.0193 +0.8250 +0.0263 +0.0373 +0.0334 +0.0321 ++0.0379 +0.0208 +0.0311 +0.7777 +0.0485 +0.0431 +0.0409 ++0.0486 +0.0221 +0.0323 +0.0356 +0.7731 +0.0455 +0.0428 ++0.0599 +0.0231 +0.0334 +0.0365 +0.0525 +0.7793 +0.0152 ++0.0163 +0.0320 +0.0347 +0.0375 +0.0535 +0.0165 +0.8095 + + +[1] P-matrix for branch length 1.000000 ++0.3514 +0.0553 +0.0992 +0.1027 +0.1595 +0.1600 +0.0719 ++0.0474 +0.5627 +0.0712 +0.0629 +0.0881 +0.0765 +0.0911 ++0.0915 +0.0767 +0.4179 +0.0869 +0.1206 +0.1059 +0.1003 ++0.1120 +0.0801 +0.1027 +0.3281 +0.1401 +0.1227 +0.1143 ++0.1276 +0.0822 +0.1046 +0.1028 +0.3403 +0.1267 +0.1158 ++0.1477 +0.0824 +0.1059 +0.1038 +0.1462 +0.3436 +0.0704 ++0.0719 +0.1063 +0.1087 +0.1048 +0.1448 +0.0763 +0.3873 + + +[1] P-matrix for branch length 1.000000 ++0.3514 +0.0553 +0.0992 +0.1027 +0.1595 +0.1600 +0.0719 ++0.0474 +0.5627 +0.0712 +0.0629 +0.0881 +0.0765 +0.0911 ++0.0915 +0.0767 +0.4179 +0.0869 +0.1206 +0.1059 +0.1003 ++0.1120 +0.0801 +0.1027 +0.3281 +0.1401 +0.1227 +0.1143 ++0.1276 +0.0822 +0.1046 +0.1028 +0.3403 +0.1267 +0.1158 ++0.1477 +0.0824 +0.1059 +0.1038 +0.1462 +0.3436 +0.0704 ++0.0719 +0.1063 +0.1087 +0.1048 +0.1448 +0.0763 +0.3873 + + +[1] CLV 5: [ {(0.00028,0.01589,0.01595,0.00065,0.00071,0.00077,0.00111)} {(0.61615,0.00007,0.00070,0.00144,0.00236,0.00359,0.00026)} {(0.02257,0.00015,0.02190,0.00118,0.00157,0.00200,0.00056)} {(0.00083,0.00032,0.68061,0.00097,0.00104,0.00112,0.00121)} {(0.02726,0.00013,0.00070,0.02946,0.00173,0.00219,0.00061)} {(0.00028,0.01589,0.01595,0.00065,0.00071,0.00077,0.00111)} {(0.00421,0.00046,0.00112,0.00186,0.00207,0.60730,0.00027)} {(0.00083,0.00032,0.68061,0.00097,0.00104,0.00112,0.00121)} {(0.00034,0.01443,0.00051,0.01614,0.00078,0.00084,0.00120)} {(0.61615,0.00007,0.00070,0.00144,0.00236,0.00359,0.00026)} {(0.96775,0.94590,0.93688,0.91992,0.91619,0.96986,0.03627)} {(0.96775,0.94590,0.93688,0.91992,0.91619,0.96986,0.03627)} {(0.00758,0.00732,0.00051,0.00079,0.00107,0.00139,0.00052)} {(0.00220,0.00056,0.02242,0.62905,0.00241,0.00255,0.00271)} {(0.00220,0.00056,0.02242,0.62905,0.00241,0.00255,0.00271)} {(0.00187,0.00039,0.02758,0.00134,0.00147,0.02606,0.00057)} {(0.00369,0.00056,0.00139,0.00235,0.59766,0.00276,0.00287)} {(0.02257,0.00015,0.02190,0.00118,0.00157,0.00200,0.00056)} {(0.02726,0.00013,0.00070,0.02946,0.00173,0.00219,0.00061)} {(0.02726,0.00013,0.00070,0.02946,0.00173,0.00219,0.00061)} ] +[1] CLV 6: [ {(0.00050,0.00013,0.00039,0.00004,0.00006,0.00007,0.00003)} {(0.03537,0.00006,0.00031,0.00060,0.00085,0.01842,0.00009)} {(0.02011,0.00048,0.01963,0.00188,0.00234,0.00293,0.00023)} {(0.00032,0.00012,0.50961,0.00038,0.00041,0.00044,0.00048)} {(0.02441,0.00053,0.00146,0.02554,0.00277,0.00342,0.00028)} {(0.00002,0.00027,0.01212,0.00003,0.00004,0.00004,0.00006)} {(0.00166,0.00016,0.00040,0.00069,0.00078,0.41723,0.00009)} {(0.00032,0.00012,0.50961,0.00038,0.00041,0.00044,0.00048)} {(0.00058,0.00011,0.00002,0.00055,0.00006,0.00008,0.00003)} {(0.03537,0.00006,0.00031,0.00060,0.00085,0.01842,0.00009)} {(0.94153,0.90681,0.89236,0.86601,0.86058,0.94483,0.02423)} {(0.94153,0.90681,0.89236,0.86601,0.86058,0.94483,0.02423)} {(0.00020,0.00013,0.00059,0.00003,0.00004,0.00005,0.00003)} {(0.00092,0.00013,0.00098,0.02392,0.00067,0.01189,0.00026)} {(0.00086,0.00015,0.00109,0.02690,0.01143,0.00080,0.00084)} {(0.00009,0.00002,0.02111,0.00007,0.00008,0.00079,0.00005)} {(0.00142,0.00019,0.00049,0.00087,0.40563,0.00104,0.00108)} {(0.01605,0.00000,0.00054,0.00007,0.00012,0.00018,0.00002)} {(0.00071,0.00001,0.00125,0.00083,0.00009,0.00012,0.00005)} {(0.00071,0.00001,0.00125,0.00083,0.00009,0.00012,0.00005)} ] +[1] CLV 7: [ {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} {(0.0273,0.0001,0.0007,0.0295,0.0017,0.0022,0.0006)} {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0006,0.0209,0.0007,0.0010,0.0170,0.0012,0.0017)} {(0.0021,0.0004,0.0010,0.0377,0.0275,0.0019,0.0020)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0226,0.0001,0.0219,0.0012,0.0016,0.0020,0.0006)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.0006,0.0209,0.0007,0.0010,0.0170,0.0012,0.0017)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.0010,0.0003,0.0217,0.0242,0.0011,0.0012,0.0013)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} ] + + + TEST alpha(ncats) = 100.00( 1), mode = MEAN + +Rates: 1.00000 +[2] P-matrix for branch length 0.100000 ++0.8844 +0.0046 +0.0151 +0.0187 +0.0333 +0.0358 +0.0081 ++0.0039 +0.9403 +0.0092 +0.0084 +0.0123 +0.0113 +0.0145 ++0.0139 +0.0100 +0.9075 +0.0139 +0.0198 +0.0178 +0.0171 ++0.0204 +0.0107 +0.0165 +0.8807 +0.0262 +0.0234 +0.0222 ++0.0266 +0.0115 +0.0172 +0.0192 +0.8774 +0.0247 +0.0234 ++0.0331 +0.0122 +0.0178 +0.0198 +0.0286 +0.8812 +0.0075 ++0.0081 +0.0169 +0.0185 +0.0203 +0.0292 +0.0081 +0.8987 + + +[2] P-matrix for branch length 0.200000 ++0.7850 +0.0097 +0.0288 +0.0347 +0.0608 +0.0649 +0.0163 ++0.0083 +0.8849 +0.0180 +0.0163 +0.0236 +0.0215 +0.0274 ++0.0265 +0.0193 +0.8250 +0.0263 +0.0373 +0.0334 +0.0321 ++0.0379 +0.0208 +0.0311 +0.7777 +0.0485 +0.0431 +0.0409 ++0.0486 +0.0221 +0.0323 +0.0356 +0.7731 +0.0455 +0.0428 ++0.0599 +0.0231 +0.0334 +0.0365 +0.0525 +0.7793 +0.0152 ++0.0163 +0.0320 +0.0347 +0.0375 +0.0535 +0.0165 +0.8095 + + +[2] P-matrix for branch length 1.000000 ++0.3514 +0.0553 +0.0992 +0.1027 +0.1595 +0.1600 +0.0719 ++0.0474 +0.5627 +0.0712 +0.0629 +0.0881 +0.0765 +0.0911 ++0.0915 +0.0767 +0.4179 +0.0869 +0.1206 +0.1059 +0.1003 ++0.1120 +0.0801 +0.1027 +0.3281 +0.1401 +0.1227 +0.1143 ++0.1276 +0.0822 +0.1046 +0.1028 +0.3403 +0.1267 +0.1158 ++0.1477 +0.0824 +0.1059 +0.1038 +0.1462 +0.3436 +0.0704 ++0.0719 +0.1063 +0.1087 +0.1048 +0.1448 +0.0763 +0.3873 + + +[2] P-matrix for branch length 1.000000 ++0.3514 +0.0553 +0.0992 +0.1027 +0.1595 +0.1600 +0.0719 ++0.0474 +0.5627 +0.0712 +0.0629 +0.0881 +0.0765 +0.0911 ++0.0915 +0.0767 +0.4179 +0.0869 +0.1206 +0.1059 +0.1003 ++0.1120 +0.0801 +0.1027 +0.3281 +0.1401 +0.1227 +0.1143 ++0.1276 +0.0822 +0.1046 +0.1028 +0.3403 +0.1267 +0.1158 ++0.1477 +0.0824 +0.1059 +0.1038 +0.1462 +0.3436 +0.0704 ++0.0719 +0.1063 +0.1087 +0.1048 +0.1448 +0.0763 +0.3873 + + +[2] CLV 5: [ {(0.00028,0.01589,0.01595,0.00065,0.00071,0.00077,0.00111)} {(0.61615,0.00007,0.00070,0.00144,0.00236,0.00359,0.00026)} {(0.02257,0.00015,0.02190,0.00118,0.00157,0.00200,0.00056)} {(0.00083,0.00032,0.68061,0.00097,0.00104,0.00112,0.00121)} {(0.02726,0.00013,0.00070,0.02946,0.00173,0.00219,0.00061)} {(0.00028,0.01589,0.01595,0.00065,0.00071,0.00077,0.00111)} {(0.00421,0.00046,0.00112,0.00186,0.00207,0.60730,0.00027)} {(0.00083,0.00032,0.68061,0.00097,0.00104,0.00112,0.00121)} {(0.00034,0.01443,0.00051,0.01614,0.00078,0.00084,0.00120)} {(0.61615,0.00007,0.00070,0.00144,0.00236,0.00359,0.00026)} {(0.96775,0.94590,0.93688,0.91992,0.91619,0.96986,0.03627)} {(0.96775,0.94590,0.93688,0.91992,0.91619,0.96986,0.03627)} {(0.00758,0.00732,0.00051,0.00079,0.00107,0.00139,0.00052)} {(0.00220,0.00056,0.02242,0.62905,0.00241,0.00255,0.00271)} {(0.00220,0.00056,0.02242,0.62905,0.00241,0.00255,0.00271)} {(0.00187,0.00039,0.02758,0.00134,0.00147,0.02606,0.00057)} {(0.00369,0.00056,0.00139,0.00235,0.59766,0.00276,0.00287)} {(0.02257,0.00015,0.02190,0.00118,0.00157,0.00200,0.00056)} {(0.02726,0.00013,0.00070,0.02946,0.00173,0.00219,0.00061)} {(0.02726,0.00013,0.00070,0.02946,0.00173,0.00219,0.00061)} ] +[2] CLV 6: [ {(0.00050,0.00013,0.00039,0.00004,0.00006,0.00007,0.00003)} {(0.03537,0.00006,0.00031,0.00060,0.00085,0.01842,0.00009)} {(0.02011,0.00048,0.01963,0.00188,0.00234,0.00293,0.00023)} {(0.00032,0.00012,0.50961,0.00038,0.00041,0.00044,0.00048)} {(0.02441,0.00053,0.00146,0.02554,0.00277,0.00342,0.00028)} {(0.00002,0.00027,0.01212,0.00003,0.00004,0.00004,0.00006)} {(0.00166,0.00016,0.00040,0.00069,0.00078,0.41723,0.00009)} {(0.00032,0.00012,0.50961,0.00038,0.00041,0.00044,0.00048)} {(0.00058,0.00011,0.00002,0.00055,0.00006,0.00008,0.00003)} {(0.03537,0.00006,0.00031,0.00060,0.00085,0.01842,0.00009)} {(0.94153,0.90681,0.89236,0.86601,0.86058,0.94483,0.02423)} {(0.94153,0.90681,0.89236,0.86601,0.86058,0.94483,0.02423)} {(0.00020,0.00013,0.00059,0.00003,0.00004,0.00005,0.00003)} {(0.00092,0.00013,0.00098,0.02392,0.00067,0.01189,0.00026)} {(0.00086,0.00015,0.00109,0.02690,0.01143,0.00080,0.00084)} {(0.00009,0.00002,0.02111,0.00007,0.00008,0.00079,0.00005)} {(0.00142,0.00019,0.00049,0.00087,0.40563,0.00104,0.00108)} {(0.01605,0.00000,0.00054,0.00007,0.00012,0.00018,0.00002)} {(0.00071,0.00001,0.00125,0.00083,0.00009,0.00012,0.00005)} {(0.00071,0.00001,0.00125,0.00083,0.00009,0.00012,0.00005)} ] +[2] CLV 7: [ {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} {(0.0273,0.0001,0.0007,0.0295,0.0017,0.0022,0.0006)} {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0006,0.0209,0.0007,0.0010,0.0170,0.0012,0.0017)} {(0.0021,0.0004,0.0010,0.0377,0.0275,0.0019,0.0020)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} {(0.0008,0.0003,0.6806,0.0010,0.0010,0.0011,0.0012)} {(0.0226,0.0001,0.0219,0.0012,0.0016,0.0020,0.0006)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.0006,0.0209,0.0007,0.0010,0.0170,0.0012,0.0017)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.0010,0.0003,0.0217,0.0242,0.0011,0.0012,0.0013)} {(0.9677,0.9459,0.9369,0.9199,0.9162,0.9699,0.0363)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.6161,0.0001,0.0007,0.0014,0.0024,0.0036,0.0003)} {(0.0042,0.0005,0.0011,0.0019,0.0021,0.6073,0.0003)} ] + + + TEST alpha(ncats) = 100.00( 1), mode = MEDIAN Rates: 1.00000 [2] P-matrix for branch length 0.100000 @@ -152,7 +296,152 @@ Subst params: 0.50000 2.00000 3.00000 4.00000 5.00000 1.10000 1.20000 - TEST alpha(ncats) = 0.10( 4) + TEST alpha(ncats) = 0.10( 4), mode = MEAN + +Rates: 0.00000 0.00069 0.11451 3.88480 + +[0] P-matrix for branch length 0.100000 ++1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 + ++0.9999 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.9999 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.9999 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.9999 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.9999 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.9999 + ++0.9859 +0.0005 +0.0018 +0.0023 +0.0041 +0.0045 +0.0009 ++0.0004 +0.9929 +0.0011 +0.0010 +0.0015 +0.0014 +0.0017 ++0.0017 +0.0012 +0.9889 +0.0017 +0.0024 +0.0022 +0.0021 ++0.0025 +0.0013 +0.0020 +0.9854 +0.0032 +0.0029 +0.0027 ++0.0033 +0.0014 +0.0021 +0.0024 +0.9849 +0.0031 +0.0029 ++0.0041 +0.0015 +0.0022 +0.0024 +0.0035 +0.9854 +0.0008 ++0.0009 +0.0020 +0.0023 +0.0025 +0.0036 +0.0009 +0.9877 + ++0.6334 +0.0201 +0.0510 +0.0590 +0.1000 +0.1052 +0.0312 ++0.0172 +0.7911 +0.0330 +0.0298 +0.0427 +0.0382 +0.0481 ++0.0471 +0.0356 +0.6931 +0.0461 +0.0649 +0.0578 +0.0553 ++0.0644 +0.0379 +0.0545 +0.6204 +0.0819 +0.0725 +0.0684 ++0.0800 +0.0398 +0.0563 +0.0601 +0.6168 +0.0761 +0.0709 ++0.0971 +0.0411 +0.0578 +0.0613 +0.0878 +0.6251 +0.0297 ++0.0312 +0.0561 +0.0599 +0.0627 +0.0887 +0.0322 +0.6692 + + +[0] P-matrix for branch length 0.200000 ++1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 + ++0.9998 +0.0000 +0.0000 +0.0000 +0.0001 +0.0001 +0.0000 ++0.0000 +0.9999 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.9999 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.9998 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.9998 +0.0000 +0.0000 ++0.0001 +0.0000 +0.0000 +0.0000 +0.0000 +0.9998 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.9999 + ++0.9720 +0.0010 +0.0036 +0.0045 +0.0082 +0.0089 +0.0018 ++0.0009 +0.9859 +0.0022 +0.0020 +0.0029 +0.0027 +0.0035 ++0.0033 +0.0023 +0.9779 +0.0033 +0.0047 +0.0043 +0.0041 ++0.0049 +0.0025 +0.0039 +0.9711 +0.0064 +0.0057 +0.0054 ++0.0066 +0.0027 +0.0041 +0.0047 +0.9701 +0.0061 +0.0057 ++0.0082 +0.0029 +0.0043 +0.0048 +0.0070 +0.9711 +0.0017 ++0.0018 +0.0041 +0.0045 +0.0050 +0.0072 +0.0018 +0.9757 + ++0.4269 +0.0427 +0.0851 +0.0914 +0.1460 +0.1490 +0.0587 ++0.0366 +0.6344 +0.0590 +0.0525 +0.0740 +0.0648 +0.0788 ++0.0786 +0.0635 +0.4969 +0.0753 +0.1050 +0.0926 +0.0880 ++0.0997 +0.0668 +0.0890 +0.4060 +0.1254 +0.1101 +0.1030 ++0.1168 +0.0690 +0.0910 +0.0919 +0.4117 +0.1143 +0.1051 ++0.1376 +0.0698 +0.0926 +0.0931 +0.1319 +0.4179 +0.0570 ++0.0587 +0.0919 +0.0954 +0.0944 +0.1314 +0.0618 +0.4664 + + +[0] P-matrix for branch length 1.000000 ++1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 + ++0.9991 +0.0000 +0.0001 +0.0001 +0.0003 +0.0003 +0.0001 ++0.0000 +0.9996 +0.0001 +0.0001 +0.0001 +0.0001 +0.0001 ++0.0001 +0.0001 +0.9993 +0.0001 +0.0001 +0.0001 +0.0001 ++0.0002 +0.0001 +0.0001 +0.9991 +0.0002 +0.0002 +0.0002 ++0.0002 +0.0001 +0.0001 +0.0001 +0.9991 +0.0002 +0.0002 ++0.0003 +0.0001 +0.0001 +0.0001 +0.0002 +0.9991 +0.0001 ++0.0001 +0.0001 +0.0001 +0.0002 +0.0002 +0.0001 +0.9993 + ++0.8690 +0.0053 +0.0172 +0.0212 +0.0376 +0.0404 +0.0093 ++0.0045 +0.9320 +0.0105 +0.0096 +0.0140 +0.0128 +0.0165 ++0.0158 +0.0113 +0.8949 +0.0158 +0.0225 +0.0202 +0.0194 ++0.0231 +0.0122 +0.0187 +0.8648 +0.0297 +0.0264 +0.0251 ++0.0301 +0.0131 +0.0195 +0.0218 +0.8612 +0.0280 +0.0264 ++0.0373 +0.0138 +0.0202 +0.0224 +0.0323 +0.8654 +0.0086 ++0.0093 +0.0192 +0.0210 +0.0230 +0.0330 +0.0093 +0.8851 + ++0.1419 +0.1398 +0.1444 +0.1240 +0.1701 +0.1498 +0.1300 ++0.1198 +0.2065 +0.1351 +0.1150 +0.1570 +0.1350 +0.1318 ++0.1333 +0.1454 +0.1555 +0.1220 +0.1664 +0.1443 +0.1331 ++0.1353 +0.1463 +0.1442 +0.1264 +0.1681 +0.1458 +0.1338 ++0.1361 +0.1465 +0.1443 +0.1233 +0.1701 +0.1462 +0.1336 ++0.1383 +0.1453 +0.1443 +0.1234 +0.1686 +0.1501 +0.1300 ++0.1300 +0.1537 +0.1442 +0.1227 +0.1670 +0.1408 +0.1417 + + +[0] P-matrix for branch length 1.000000 ++1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 + ++0.9991 +0.0000 +0.0001 +0.0001 +0.0003 +0.0003 +0.0001 ++0.0000 +0.9996 +0.0001 +0.0001 +0.0001 +0.0001 +0.0001 ++0.0001 +0.0001 +0.9993 +0.0001 +0.0001 +0.0001 +0.0001 ++0.0002 +0.0001 +0.0001 +0.9991 +0.0002 +0.0002 +0.0002 ++0.0002 +0.0001 +0.0001 +0.0001 +0.9991 +0.0002 +0.0002 ++0.0003 +0.0001 +0.0001 +0.0001 +0.0002 +0.9991 +0.0001 ++0.0001 +0.0001 +0.0001 +0.0002 +0.0002 +0.0001 +0.9993 + ++0.8690 +0.0053 +0.0172 +0.0212 +0.0376 +0.0404 +0.0093 ++0.0045 +0.9320 +0.0105 +0.0096 +0.0140 +0.0128 +0.0165 ++0.0158 +0.0113 +0.8949 +0.0158 +0.0225 +0.0202 +0.0194 ++0.0231 +0.0122 +0.0187 +0.8648 +0.0297 +0.0264 +0.0251 ++0.0301 +0.0131 +0.0195 +0.0218 +0.8612 +0.0280 +0.0264 ++0.0373 +0.0138 +0.0202 +0.0224 +0.0323 +0.8654 +0.0086 ++0.0093 +0.0192 +0.0210 +0.0230 +0.0330 +0.0093 +0.8851 + ++0.1419 +0.1398 +0.1444 +0.1240 +0.1701 +0.1498 +0.1300 ++0.1198 +0.2065 +0.1351 +0.1150 +0.1570 +0.1350 +0.1318 ++0.1333 +0.1454 +0.1555 +0.1220 +0.1664 +0.1443 +0.1331 ++0.1353 +0.1463 +0.1442 +0.1264 +0.1681 +0.1458 +0.1338 ++0.1361 +0.1465 +0.1443 +0.1233 +0.1701 +0.1462 +0.1336 ++0.1383 +0.1453 +0.1443 +0.1234 +0.1686 +0.1501 +0.1300 ++0.1300 +0.1537 +0.1442 +0.1227 +0.1670 +0.1408 +0.1417 + + +[0] CLV 5: [ {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00001,0.00001,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00213,0.00228,0.00001,0.00001,0.00001,0.00002),(0.00364,0.03742,0.03157,0.00595,0.00628,0.00646,0.00876)} {(1.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.99966,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.94473,0.00000,0.00001,0.00002,0.00004,0.00007,0.00000),(0.18225,0.00134,0.00618,0.00994,0.01365,0.01893,0.00345)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00002,0.00000,0.00002,0.00000,0.00000,0.00000,0.00000),(0.00349,0.00000,0.00324,0.00002,0.00003,0.00004,0.00001),(0.03635,0.00216,0.03905,0.00888,0.01063,0.01274,0.00560)} {(0.00000,0.00000,1.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.99973,0.00000,0.00000,0.00000,0.00000),(0.00001,0.00000,0.95620,0.00002,0.00002,0.00002,0.00002),(0.00725,0.00348,0.24687,0.00793,0.00828,0.00858,0.00910)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00003,0.00000,0.00000,0.00003,0.00000,0.00000,0.00000),(0.00440,0.00000,0.00001,0.00480,0.00003,0.00004,0.00001),(0.03902,0.00192,0.00592,0.04049,0.01074,0.01281,0.00554)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00001,0.00001,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00213,0.00228,0.00001,0.00001,0.00001,0.00002),(0.00364,0.03742,0.03157,0.00595,0.00628,0.00646,0.00876)} {(0.00000,0.00000,0.00000,0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.99965,0.00000),(0.00008,0.00001,0.00002,0.00003,0.00004,0.94311,0.00000),(0.02221,0.00420,0.00858,0.01212,0.01307,0.17468,0.00382)} {(0.00000,0.00000,1.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.99973,0.00000,0.00000,0.00000,0.00000),(0.00001,0.00000,0.95620,0.00002,0.00002,0.00002,0.00002),(0.00725,0.00348,0.24687,0.00793,0.00828,0.00858,0.00910)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00001,0.00000,0.00002,0.00000,0.00000,0.00000),(0.00000,0.00195,0.00001,0.00245,0.00001,0.00001,0.00002),(0.00391,0.03329,0.00479,0.02711,0.00635,0.00650,0.00868)} {(1.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.99966,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.94473,0.00000,0.00001,0.00002,0.00004,0.00007,0.00000),(0.18225,0.00134,0.00618,0.00994,0.01365,0.01893,0.00345)} {(1.00000,1.00000,1.00000,1.00000,1.00000,1.00000,0.00000),(0.99998,0.99996,0.99995,0.99993,0.99993,0.99998,0.00000),(0.99631,0.99307,0.99177,0.98918,0.98855,0.99663,0.00059),(0.88600,0.84869,0.83167,0.80460,0.80081,0.88916,0.28473)} {(1.00000,1.00000,1.00000,1.00000,1.00000,1.00000,0.00000),(0.99998,0.99996,0.99995,0.99993,0.99993,0.99998,0.00000),(0.99631,0.99307,0.99177,0.98918,0.98855,0.99663,0.00059),(0.88600,0.84869,0.83167,0.80460,0.80081,0.88916,0.28473)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00001,0.00001,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00097,0.00084,0.00001,0.00001,0.00002,0.00002,0.00001),(0.01825,0.02324,0.00499,0.00666,0.00807,0.00960,0.00540)} {(0.00000,0.00000,0.00000,1.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00002,0.99967,0.00000,0.00000,0.00000),(0.00004,0.00001,0.00327,0.94686,0.00004,0.00004,0.00005),(0.01614,0.00585,0.04311,0.20100,0.01682,0.01730,0.01792)} {(0.00000,0.00000,0.00000,1.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00002,0.99967,0.00000,0.00000,0.00000),(0.00004,0.00001,0.00327,0.94686,0.00004,0.00004,0.00005),(0.01614,0.00585,0.04311,0.20100,0.01682,0.01730,0.01792)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00003,0.00000,0.00000,0.00003,0.00000),(0.00003,0.00001,0.00420,0.00002,0.00002,0.00417,0.00001),(0.01269,0.00382,0.04602,0.00980,0.01041,0.03871,0.00589)} {(0.00000,0.00000,0.00000,0.00000,1.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.99963,0.00000,0.00000),(0.00007,0.00001,0.00002,0.00004,0.94118,0.00005,0.00005),(0.02132,0.00547,0.01103,0.01572,0.16953,0.01740,0.01727)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00002,0.00000,0.00002,0.00000,0.00000,0.00000,0.00000),(0.00349,0.00000,0.00324,0.00002,0.00003,0.00004,0.00001),(0.03635,0.00216,0.03905,0.00888,0.01063,0.01274,0.00560)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00003,0.00000,0.00000,0.00003,0.00000,0.00000,0.00000),(0.00440,0.00000,0.00001,0.00480,0.00003,0.00004,0.00001),(0.03902,0.00192,0.00592,0.04049,0.01074,0.01281,0.00554)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00003,0.00000,0.00000,0.00003,0.00000,0.00000,0.00000),(0.00440,0.00000,0.00001,0.00480,0.00003,0.00004,0.00001),(0.03902,0.00192,0.00592,0.04049,0.01074,0.01281,0.00554)} ] +[0] CLV 6: [ {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00001,0.00000,0.00001,0.00000,0.00000,0.00000,0.00000),(0.00282,0.00117,0.00196,0.00086,0.00104,0.00123,0.00065)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00005,0.00000,0.00000,0.00000,0.00000,0.00003,0.00000),(0.00826,0.00000,0.00001,0.00001,0.00002,0.00386,0.00000),(0.01786,0.00040,0.00144,0.00231,0.00294,0.01331,0.00067)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00002,0.00000,0.00002,0.00000,0.00000,0.00000,0.00000),(0.00344,0.00001,0.00320,0.00003,0.00004,0.00006,0.00000),(0.02651,0.00470,0.02828,0.01098,0.01221,0.01460,0.00494)} {(0.00000,0.00000,1.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.99953,0.00000,0.00000,0.00000,0.00000),(0.00001,0.00000,0.92460,0.00001,0.00001,0.00001,0.00001),(0.00168,0.00073,0.08620,0.00186,0.00196,0.00203,0.00218)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00003,0.00000,0.00000,0.00003,0.00000,0.00000,0.00000),(0.00434,0.00001,0.00003,0.00471,0.00006,0.00007,0.00000),(0.02828,0.00443,0.00878,0.02710,0.01249,0.01491,0.00496)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00001,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00221,0.00000,0.00000,0.00000,0.00000),(0.00056,0.00188,0.01238,0.00077,0.00081,0.00083,0.00106)} {(0.00000,0.00000,0.00000,0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.99938,0.00000),(0.00004,0.00000,0.00001,0.00002,0.00002,0.90255,0.00000),(0.00523,0.00076,0.00175,0.00259,0.00283,0.04765,0.00071)} {(0.00000,0.00000,1.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.99953,0.00000,0.00000,0.00000,0.00000),(0.00001,0.00000,0.92460,0.00001,0.00001,0.00001,0.00001),(0.00168,0.00073,0.08620,0.00186,0.00196,0.00203,0.00218)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00001,0.00000,0.00000,0.00001,0.00000,0.00000,0.00000),(0.00281,0.00104,0.00057,0.00201,0.00100,0.00118,0.00062)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00005,0.00000,0.00000,0.00000,0.00000,0.00003,0.00000),(0.00826,0.00000,0.00001,0.00001,0.00002,0.00386,0.00000),(0.01786,0.00040,0.00144,0.00231,0.00294,0.01331,0.00067)} {(1.00000,1.00000,1.00000,1.00000,1.00000,1.00000,0.00000),(0.99996,0.99993,0.99991,0.99988,0.99988,0.99996,0.00000),(0.99349,0.98788,0.98563,0.98118,0.98009,0.99405,0.00031),(0.80076,0.75528,0.73381,0.70257,0.69945,0.80432,0.24850)} {(1.00000,1.00000,1.00000,1.00000,1.00000,1.00000,0.00000),(0.99996,0.99993,0.99991,0.99988,0.99988,0.99996,0.00000),(0.99349,0.98788,0.98563,0.98118,0.98009,0.99405,0.00031),(0.80076,0.75528,0.73381,0.70257,0.69945,0.80432,0.24850)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00001,0.00000,0.00000,0.00000,0.00000),(0.00125,0.00118,0.00339,0.00073,0.00083,0.00095,0.00069)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00003,0.00000,0.00001,0.00000),(0.00002,0.00000,0.00002,0.00532,0.00001,0.00229,0.00000),(0.00424,0.00094,0.00400,0.01455,0.00331,0.01231,0.00186)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00004,0.00001,0.00000,0.00000),(0.00002,0.00000,0.00002,0.00595,0.00221,0.00002,0.00002),(0.00416,0.00108,0.00454,0.01657,0.01193,0.00389,0.00395)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00003,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00407,0.00000,0.00000,0.00002,0.00000),(0.00139,0.00043,0.01805,0.00121,0.00129,0.00277,0.00096)} {(0.00000,0.00000,0.00000,0.00000,1.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.99936,0.00000,0.00000),(0.00003,0.00000,0.00001,0.00002,0.89933,0.00002,0.00002),(0.00503,0.00105,0.00237,0.00354,0.04554,0.00398,0.00391)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00002,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00335,0.00000,0.00001,0.00000,0.00000,0.00000,0.00000),(0.01202,0.00019,0.00244,0.00122,0.00159,0.00213,0.00054)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00002,0.00000,0.00003,0.00002,0.00000,0.00000,0.00000),(0.00256,0.00028,0.00478,0.00269,0.00127,0.00146,0.00089)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00002,0.00000,0.00003,0.00002,0.00000,0.00000,0.00000),(0.00256,0.00028,0.00478,0.00269,0.00127,0.00146,0.00089)} ] +[0] CLV 7: [ {(0.0000,0.0000,1.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9997,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9562,0.0000,0.0000,0.0000,0.0000),(0.0073,0.0035,0.2469,0.0079,0.0083,0.0086,0.0091)} {(0.0000,0.0000,0.0000,0.0000,0.0000,1.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.9996,0.0000),(0.0001,0.0000,0.0000,0.0000,0.0000,0.9431,0.0000),(0.0222,0.0042,0.0086,0.0121,0.0131,0.1747,0.0038)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0044,0.0000,0.0000,0.0048,0.0000,0.0000,0.0000),(0.0390,0.0019,0.0059,0.0405,0.0107,0.0128,0.0055)} {(0.0000,0.0000,1.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9997,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9562,0.0000,0.0000,0.0000,0.0000),(0.0073,0.0035,0.2469,0.0079,0.0083,0.0086,0.0091)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0029,0.0000,0.0000,0.0026,0.0000,0.0000),(0.0062,0.0469,0.0067,0.0084,0.0284,0.0092,0.0121)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0062,0.0045,0.0000,0.0000),(0.0133,0.0039,0.0079,0.0509,0.0379,0.0123,0.0124)} {(0.0000,0.0000,0.0000,0.0000,0.0000,1.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.9996,0.0000),(0.0001,0.0000,0.0000,0.0000,0.0000,0.9431,0.0000),(0.0222,0.0042,0.0086,0.0121,0.0131,0.1747,0.0038)} {(0.0000,0.0000,1.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9997,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9562,0.0000,0.0000,0.0000,0.0000),(0.0073,0.0035,0.2469,0.0079,0.0083,0.0086,0.0091)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0035,0.0000,0.0032,0.0000,0.0000,0.0000,0.0000),(0.0364,0.0022,0.0391,0.0089,0.0106,0.0127,0.0056)} {(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9997,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9447,0.0000,0.0000,0.0000,0.0000,0.0001,0.0000),(0.1823,0.0013,0.0062,0.0099,0.0136,0.0189,0.0034)} {(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(1.0000,1.0000,0.9999,0.9999,0.9999,1.0000,0.0000),(0.9963,0.9931,0.9918,0.9892,0.9885,0.9966,0.0006),(0.8860,0.8487,0.8317,0.8046,0.8008,0.8892,0.2847)} {(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(1.0000,1.0000,0.9999,0.9999,0.9999,1.0000,0.0000),(0.9963,0.9931,0.9918,0.9892,0.9885,0.9966,0.0006),(0.8860,0.8487,0.8317,0.8046,0.8008,0.8892,0.2847)} {(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9997,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9447,0.0000,0.0000,0.0000,0.0000,0.0001,0.0000),(0.1823,0.0013,0.0062,0.0099,0.0136,0.0189,0.0034)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0029,0.0000,0.0000,0.0026,0.0000,0.0000),(0.0062,0.0469,0.0067,0.0084,0.0284,0.0092,0.0121)} {(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(1.0000,1.0000,0.9999,0.9999,0.9999,1.0000,0.0000),(0.9963,0.9931,0.9918,0.9892,0.9885,0.9966,0.0006),(0.8860,0.8487,0.8317,0.8046,0.8008,0.8892,0.2847)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0033,0.0038,0.0000,0.0000,0.0000),(0.0078,0.0031,0.0374,0.0362,0.0084,0.0086,0.0090)} {(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(1.0000,1.0000,0.9999,0.9999,0.9999,1.0000,0.0000),(0.9963,0.9931,0.9918,0.9892,0.9885,0.9966,0.0006),(0.8860,0.8487,0.8317,0.8046,0.8008,0.8892,0.2847)} {(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9997,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9447,0.0000,0.0000,0.0000,0.0000,0.0001,0.0000),(0.1823,0.0013,0.0062,0.0099,0.0136,0.0189,0.0034)} {(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9997,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9447,0.0000,0.0000,0.0000,0.0000,0.0001,0.0000),(0.1823,0.0013,0.0062,0.0099,0.0136,0.0189,0.0034)} {(0.0000,0.0000,0.0000,0.0000,0.0000,1.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.9996,0.0000),(0.0001,0.0000,0.0000,0.0000,0.0000,0.9431,0.0000),(0.0222,0.0042,0.0086,0.0121,0.0131,0.1747,0.0038)} ] + + + TEST alpha(ncats) = 0.10( 4), mode = MEDIAN Rates: 0.00000 0.00108 0.09375 3.90517 @@ -297,7 +586,152 @@ Rates: 0.00000 0.00108 0.09375 3.90517 [0] CLV 7: [ {(0.0000,0.0000,1.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9996,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9640,0.0000,0.0000,0.0000,0.0000),(0.0073,0.0035,0.2453,0.0080,0.0083,0.0086,0.0092)} {(0.0000,0.0000,0.0000,0.0000,0.0000,1.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.9994,0.0000),(0.0001,0.0000,0.0000,0.0000,0.0000,0.9531,0.0000),(0.0223,0.0042,0.0086,0.0122,0.0131,0.1734,0.0039)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0036,0.0000,0.0000,0.0040,0.0000,0.0000,0.0000),(0.0390,0.0019,0.0060,0.0404,0.0108,0.0129,0.0056)} {(0.0000,0.0000,1.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9996,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9640,0.0000,0.0000,0.0000,0.0000),(0.0073,0.0035,0.2453,0.0080,0.0083,0.0086,0.0092)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0024,0.0000,0.0000,0.0022,0.0000,0.0000),(0.0063,0.0470,0.0067,0.0084,0.0284,0.0093,0.0121)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0001,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0051,0.0037,0.0000,0.0000),(0.0134,0.0039,0.0080,0.0508,0.0378,0.0123,0.0125)} {(0.0000,0.0000,0.0000,0.0000,0.0000,1.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.9994,0.0000),(0.0001,0.0000,0.0000,0.0000,0.0000,0.9531,0.0000),(0.0223,0.0042,0.0086,0.0122,0.0131,0.1734,0.0039)} {(0.0000,0.0000,1.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9996,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9640,0.0000,0.0000,0.0000,0.0000),(0.0073,0.0035,0.2453,0.0080,0.0083,0.0086,0.0092)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0029,0.0000,0.0027,0.0000,0.0000,0.0000,0.0000),(0.0363,0.0022,0.0391,0.0089,0.0107,0.0128,0.0056)} {(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9995,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9545,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.1809,0.0014,0.0062,0.0100,0.0137,0.0190,0.0035)} {(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(1.0000,0.9999,0.9999,0.9999,0.9999,1.0000,0.0000),(0.9970,0.9943,0.9932,0.9911,0.9906,0.9972,0.0004),(0.8855,0.8482,0.8312,0.8041,0.8004,0.8887,0.2865)} {(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(1.0000,0.9999,0.9999,0.9999,0.9999,1.0000,0.0000),(0.9970,0.9943,0.9932,0.9911,0.9906,0.9972,0.0004),(0.8855,0.8482,0.8312,0.8041,0.8004,0.8887,0.2865)} {(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9995,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9545,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.1809,0.0014,0.0062,0.0100,0.0137,0.0190,0.0035)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0024,0.0000,0.0000,0.0022,0.0000,0.0000),(0.0063,0.0470,0.0067,0.0084,0.0284,0.0093,0.0121)} {(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(1.0000,0.9999,0.9999,0.9999,0.9999,1.0000,0.0000),(0.9970,0.9943,0.9932,0.9911,0.9906,0.9972,0.0004),(0.8855,0.8482,0.8312,0.8041,0.8004,0.8887,0.2865)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0027,0.0032,0.0000,0.0000,0.0000),(0.0078,0.0031,0.0374,0.0361,0.0084,0.0087,0.0091)} {(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(1.0000,0.9999,0.9999,0.9999,0.9999,1.0000,0.0000),(0.9970,0.9943,0.9932,0.9911,0.9906,0.9972,0.0004),(0.8855,0.8482,0.8312,0.8041,0.8004,0.8887,0.2865)} {(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9995,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9545,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.1809,0.0014,0.0062,0.0100,0.0137,0.0190,0.0035)} {(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9995,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9545,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.1809,0.0014,0.0062,0.0100,0.0137,0.0190,0.0035)} {(0.0000,0.0000,0.0000,0.0000,0.0000,1.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.9994,0.0000),(0.0001,0.0000,0.0000,0.0000,0.0000,0.9531,0.0000),(0.0223,0.0042,0.0086,0.0122,0.0131,0.1734,0.0039)} ] - TEST alpha(ncats) = 1.25( 4) + TEST alpha(ncats) = 1.25( 4), mode = MEAN + +Rates: 0.19913 0.57560 1.09104 2.13423 + +[1] P-matrix for branch length 0.100000 ++0.9756 +0.0009 +0.0031 +0.0039 +0.0071 +0.0077 +0.0016 ++0.0007 +0.9878 +0.0019 +0.0017 +0.0025 +0.0023 +0.0030 ++0.0029 +0.0020 +0.9807 +0.0029 +0.0041 +0.0037 +0.0036 ++0.0043 +0.0022 +0.0034 +0.9748 +0.0056 +0.0050 +0.0047 ++0.0057 +0.0024 +0.0036 +0.0041 +0.9740 +0.0053 +0.0050 ++0.0071 +0.0025 +0.0037 +0.0042 +0.0061 +0.9748 +0.0015 ++0.0016 +0.0035 +0.0039 +0.0043 +0.0063 +0.0016 +0.9788 + ++0.9314 +0.0026 +0.0089 +0.0111 +0.0199 +0.0215 +0.0047 ++0.0022 +0.9651 +0.0054 +0.0049 +0.0072 +0.0066 +0.0086 ++0.0082 +0.0058 +0.9454 +0.0082 +0.0117 +0.0105 +0.0101 ++0.0121 +0.0063 +0.0097 +0.9292 +0.0156 +0.0139 +0.0132 ++0.0160 +0.0067 +0.0101 +0.0114 +0.9270 +0.0148 +0.0140 ++0.0199 +0.0072 +0.0105 +0.0118 +0.0170 +0.9294 +0.0043 ++0.0047 +0.0100 +0.0110 +0.0121 +0.0175 +0.0046 +0.9401 + ++0.8747 +0.0050 +0.0164 +0.0202 +0.0360 +0.0387 +0.0089 ++0.0043 +0.9351 +0.0101 +0.0092 +0.0134 +0.0123 +0.0157 ++0.0151 +0.0108 +0.8996 +0.0151 +0.0215 +0.0193 +0.0186 ++0.0221 +0.0117 +0.0179 +0.8707 +0.0284 +0.0253 +0.0240 ++0.0288 +0.0125 +0.0186 +0.0208 +0.8672 +0.0268 +0.0253 ++0.0357 +0.0132 +0.0193 +0.0214 +0.0309 +0.8712 +0.0082 ++0.0089 +0.0184 +0.0201 +0.0220 +0.0316 +0.0089 +0.8901 + ++0.7727 +0.0104 +0.0305 +0.0367 +0.0641 +0.0683 +0.0173 ++0.0089 +0.8778 +0.0191 +0.0173 +0.0251 +0.0228 +0.0291 ++0.0281 +0.0206 +0.8146 +0.0279 +0.0395 +0.0354 +0.0339 ++0.0400 +0.0221 +0.0330 +0.7650 +0.0512 +0.0455 +0.0431 ++0.0513 +0.0234 +0.0342 +0.0376 +0.7603 +0.0481 +0.0452 ++0.0631 +0.0245 +0.0354 +0.0385 +0.0555 +0.7668 +0.0162 ++0.0173 +0.0339 +0.0368 +0.0396 +0.0565 +0.0176 +0.7984 + + +[1] P-matrix for branch length 0.200000 ++0.9519 +0.0018 +0.0062 +0.0078 +0.0140 +0.0152 +0.0032 ++0.0015 +0.9757 +0.0037 +0.0034 +0.0050 +0.0046 +0.0060 ++0.0057 +0.0040 +0.9619 +0.0057 +0.0082 +0.0074 +0.0071 ++0.0085 +0.0044 +0.0068 +0.9504 +0.0109 +0.0098 +0.0093 ++0.0112 +0.0047 +0.0071 +0.0080 +0.9488 +0.0104 +0.0098 ++0.0140 +0.0050 +0.0074 +0.0083 +0.0120 +0.9505 +0.0029 ++0.0032 +0.0070 +0.0077 +0.0085 +0.0123 +0.0032 +0.9581 + ++0.8684 +0.0053 +0.0172 +0.0213 +0.0378 +0.0406 +0.0093 ++0.0046 +0.9317 +0.0106 +0.0097 +0.0141 +0.0129 +0.0166 ++0.0159 +0.0114 +0.8944 +0.0159 +0.0226 +0.0203 +0.0195 ++0.0232 +0.0123 +0.0188 +0.8641 +0.0298 +0.0266 +0.0252 ++0.0302 +0.0131 +0.0196 +0.0219 +0.8605 +0.0281 +0.0266 ++0.0375 +0.0139 +0.0203 +0.0225 +0.0325 +0.8647 +0.0086 ++0.0093 +0.0193 +0.0211 +0.0231 +0.0332 +0.0094 +0.8845 + ++0.7684 +0.0106 +0.0311 +0.0374 +0.0652 +0.0695 +0.0177 ++0.0091 +0.8753 +0.0195 +0.0177 +0.0256 +0.0232 +0.0296 ++0.0287 +0.0210 +0.8110 +0.0284 +0.0402 +0.0361 +0.0346 ++0.0408 +0.0225 +0.0336 +0.7605 +0.0522 +0.0464 +0.0439 ++0.0522 +0.0239 +0.0349 +0.0383 +0.7558 +0.0490 +0.0460 ++0.0642 +0.0250 +0.0361 +0.0393 +0.0565 +0.7624 +0.0166 ++0.0177 +0.0346 +0.0375 +0.0403 +0.0575 +0.0180 +0.7945 + ++0.6074 +0.0223 +0.0551 +0.0632 +0.1063 +0.1116 +0.0342 ++0.0191 +0.7735 +0.0359 +0.0323 +0.0462 +0.0413 +0.0517 ++0.0508 +0.0386 +0.6696 +0.0496 +0.0698 +0.0621 +0.0594 ++0.0689 +0.0411 +0.0587 +0.5934 +0.0875 +0.0774 +0.0730 ++0.0851 +0.0431 +0.0605 +0.0642 +0.5905 +0.0812 +0.0755 ++0.1030 +0.0444 +0.0621 +0.0655 +0.0936 +0.5988 +0.0326 ++0.0342 +0.0604 +0.0643 +0.0669 +0.0944 +0.0353 +0.6445 + + +[1] P-matrix for branch length 1.000000 ++0.7858 +0.0096 +0.0286 +0.0346 +0.0606 +0.0647 +0.0162 ++0.0082 +0.8854 +0.0179 +0.0162 +0.0235 +0.0214 +0.0273 ++0.0264 +0.0193 +0.8257 +0.0262 +0.0371 +0.0333 +0.0320 ++0.0377 +0.0207 +0.0310 +0.7786 +0.0483 +0.0430 +0.0407 ++0.0484 +0.0220 +0.0322 +0.0354 +0.7739 +0.0454 +0.0427 ++0.0597 +0.0231 +0.0333 +0.0364 +0.0524 +0.7801 +0.0151 ++0.0162 +0.0319 +0.0346 +0.0373 +0.0533 +0.0164 +0.8103 + ++0.5194 +0.0310 +0.0692 +0.0771 +0.1267 +0.1314 +0.0451 ++0.0266 +0.7100 +0.0463 +0.0415 +0.0589 +0.0521 +0.0646 ++0.0639 +0.0499 +0.5877 +0.0619 +0.0866 +0.0768 +0.0732 ++0.0841 +0.0528 +0.0731 +0.5019 +0.1063 +0.0937 +0.0880 ++0.1014 +0.0550 +0.0751 +0.0780 +0.5022 +0.0978 +0.0905 ++0.1213 +0.0562 +0.0768 +0.0793 +0.1129 +0.5102 +0.0434 ++0.0451 +0.0753 +0.0793 +0.0807 +0.1132 +0.0471 +0.5593 + ++0.3269 +0.0602 +0.1040 +0.1062 +0.1633 +0.1627 +0.0767 ++0.0516 +0.5367 +0.0757 +0.0667 +0.0932 +0.0807 +0.0953 ++0.0960 +0.0815 +0.3911 +0.0908 +0.1259 +0.1104 +0.1043 ++0.1159 +0.0849 +0.1073 +0.3029 +0.1447 +0.1265 +0.1177 ++0.1307 +0.0870 +0.1091 +0.1061 +0.3176 +0.1304 +0.1190 ++0.1501 +0.0869 +0.1104 +0.1071 +0.1505 +0.3197 +0.0753 ++0.0767 +0.1111 +0.1130 +0.1079 +0.1488 +0.0816 +0.3608 + ++0.1868 +0.1049 +0.1344 +0.1232 +0.1753 +0.1630 +0.1126 ++0.0899 +0.3348 +0.1115 +0.0963 +0.1324 +0.1133 +0.1218 ++0.1240 +0.1201 +0.2205 +0.1146 +0.1571 +0.1365 +0.1271 ++0.1344 +0.1226 +0.1354 +0.1637 +0.1664 +0.1446 +0.1329 ++0.1402 +0.1236 +0.1362 +0.1221 +0.1989 +0.1464 +0.1326 ++0.1504 +0.1220 +0.1365 +0.1223 +0.1690 +0.1877 +0.1121 ++0.1126 +0.1421 +0.1377 +0.1218 +0.1658 +0.1214 +0.1986 + + +[1] P-matrix for branch length 1.000000 ++0.7858 +0.0096 +0.0286 +0.0346 +0.0606 +0.0647 +0.0162 ++0.0082 +0.8854 +0.0179 +0.0162 +0.0235 +0.0214 +0.0273 ++0.0264 +0.0193 +0.8257 +0.0262 +0.0371 +0.0333 +0.0320 ++0.0377 +0.0207 +0.0310 +0.7786 +0.0483 +0.0430 +0.0407 ++0.0484 +0.0220 +0.0322 +0.0354 +0.7739 +0.0454 +0.0427 ++0.0597 +0.0231 +0.0333 +0.0364 +0.0524 +0.7801 +0.0151 ++0.0162 +0.0319 +0.0346 +0.0373 +0.0533 +0.0164 +0.8103 + ++0.5194 +0.0310 +0.0692 +0.0771 +0.1267 +0.1314 +0.0451 ++0.0266 +0.7100 +0.0463 +0.0415 +0.0589 +0.0521 +0.0646 ++0.0639 +0.0499 +0.5877 +0.0619 +0.0866 +0.0768 +0.0732 ++0.0841 +0.0528 +0.0731 +0.5019 +0.1063 +0.0937 +0.0880 ++0.1014 +0.0550 +0.0751 +0.0780 +0.5022 +0.0978 +0.0905 ++0.1213 +0.0562 +0.0768 +0.0793 +0.1129 +0.5102 +0.0434 ++0.0451 +0.0753 +0.0793 +0.0807 +0.1132 +0.0471 +0.5593 + ++0.3269 +0.0602 +0.1040 +0.1062 +0.1633 +0.1627 +0.0767 ++0.0516 +0.5367 +0.0757 +0.0667 +0.0932 +0.0807 +0.0953 ++0.0960 +0.0815 +0.3911 +0.0908 +0.1259 +0.1104 +0.1043 ++0.1159 +0.0849 +0.1073 +0.3029 +0.1447 +0.1265 +0.1177 ++0.1307 +0.0870 +0.1091 +0.1061 +0.3176 +0.1304 +0.1190 ++0.1501 +0.0869 +0.1104 +0.1071 +0.1505 +0.3197 +0.0753 ++0.0767 +0.1111 +0.1130 +0.1079 +0.1488 +0.0816 +0.3608 + ++0.1868 +0.1049 +0.1344 +0.1232 +0.1753 +0.1630 +0.1126 ++0.0899 +0.3348 +0.1115 +0.0963 +0.1324 +0.1133 +0.1218 ++0.1240 +0.1201 +0.2205 +0.1146 +0.1571 +0.1365 +0.1271 ++0.1344 +0.1226 +0.1354 +0.1637 +0.1664 +0.1446 +0.1329 ++0.1402 +0.1236 +0.1362 +0.1221 +0.1989 +0.1464 +0.1326 ++0.1504 +0.1220 +0.1365 +0.1223 +0.1690 +0.1877 +0.1121 ++0.1126 +0.1421 +0.1377 +0.1218 +0.1658 +0.1214 +0.1986 + + +[1] CLV 5: [ {(0.00001,0.00365,0.00388,0.00003,0.00003,0.00004,0.00005),(0.00009,0.00987,0.01020,0.00023,0.00026,0.00028,0.00041),(0.00033,0.01705,0.01702,0.00076,0.00083,0.00090,0.00130),(0.00123,0.02775,0.02587,0.00241,0.00261,0.00276,0.00388)} {(0.90607,0.00000,0.00003,0.00007,0.00013,0.00020,0.00001),(0.75414,0.00002,0.00025,0.00054,0.00091,0.00141,0.00009),(0.59042,0.00008,0.00082,0.00166,0.00272,0.00412,0.00031),(0.36890,0.00037,0.00258,0.00475,0.00724,0.01061,0.00117)} {(0.00589,0.00001,0.00550,0.00006,0.00008,0.00010,0.00002),(0.01498,0.00005,0.01424,0.00044,0.00059,0.00076,0.00020),(0.02390,0.00018,0.02328,0.00137,0.00182,0.00232,0.00066),(0.03344,0.00069,0.03403,0.00404,0.00514,0.00640,0.00220)} {(0.00004,0.00001,0.92518,0.00005,0.00005,0.00005,0.00006),(0.00030,0.00011,0.79991,0.00035,0.00038,0.00041,0.00045),(0.00097,0.00038,0.65767,0.00113,0.00122,0.00130,0.00140),(0.00303,0.00129,0.44841,0.00344,0.00366,0.00386,0.00414)} {(0.00740,0.00001,0.00003,0.00806,0.00009,0.00012,0.00003),(0.01846,0.00004,0.00025,0.02004,0.00066,0.00084,0.00022),(0.02873,0.00016,0.00082,0.03103,0.00200,0.00252,0.00071),(0.03838,0.00062,0.00252,0.04091,0.00546,0.00674,0.00229)} {(0.00001,0.00365,0.00388,0.00003,0.00003,0.00004,0.00005),(0.00009,0.00987,0.01020,0.00023,0.00026,0.00028,0.00041),(0.00033,0.01705,0.01702,0.00076,0.00083,0.00090,0.00130),(0.00123,0.02775,0.02587,0.00241,0.00261,0.00276,0.00388)} {(0.00023,0.00002,0.00005,0.00010,0.00011,0.90337,0.00001),(0.00165,0.00017,0.00041,0.00071,0.00079,0.74775,0.00009),(0.00484,0.00054,0.00130,0.00215,0.00240,0.58122,0.00032),(0.01245,0.00170,0.00386,0.00599,0.00659,0.35854,0.00125)} {(0.00004,0.00001,0.92518,0.00005,0.00005,0.00005,0.00006),(0.00030,0.00011,0.79991,0.00035,0.00038,0.00041,0.00045),(0.00097,0.00038,0.65767,0.00113,0.00122,0.00130,0.00140),(0.00303,0.00129,0.44841,0.00344,0.00366,0.00386,0.00414)} {(0.00001,0.00334,0.00002,0.00414,0.00004,0.00004,0.00006),(0.00011,0.00900,0.00018,0.01062,0.00029,0.00031,0.00045),(0.00040,0.01548,0.00060,0.01712,0.00091,0.00098,0.00139),(0.00141,0.02498,0.00192,0.02439,0.00277,0.00291,0.00404)} {(0.90607,0.00000,0.00003,0.00007,0.00013,0.00020,0.00001),(0.75414,0.00002,0.00025,0.00054,0.00091,0.00141,0.00009),(0.59042,0.00008,0.00082,0.00166,0.00272,0.00412,0.00031),(0.36890,0.00037,0.00258,0.00475,0.00724,0.01061,0.00117)} {(0.99357,0.98808,0.98586,0.98150,0.98043,0.99412,0.00175),(0.98139,0.96716,0.96136,0.95019,0.94758,0.98279,0.01334),(0.96485,0.94163,0.93202,0.91404,0.91013,0.96708,0.04224),(0.93282,0.89918,0.88476,0.85940,0.85463,0.93592,0.12636)} {(0.99357,0.98808,0.98586,0.98150,0.98043,0.99412,0.00175),(0.98139,0.96716,0.96136,0.95019,0.94758,0.98279,0.01334),(0.96485,0.94163,0.93202,0.91404,0.91013,0.96708,0.04224),(0.93282,0.89918,0.88476,0.85940,0.85463,0.93592,0.12636)} {(0.00167,0.00146,0.00002,0.00004,0.00005,0.00007,0.00002),(0.00462,0.00424,0.00018,0.00029,0.00040,0.00052,0.00018),(0.00816,0.00797,0.00060,0.00092,0.00125,0.00161,0.00061),(0.01355,0.01479,0.00196,0.00283,0.00367,0.00458,0.00206)} {(0.00011,0.00002,0.00556,0.90964,0.00012,0.00013,0.00014),(0.00082,0.00020,0.01447,0.76295,0.00091,0.00096,0.00102),(0.00256,0.00066,0.02388,0.60400,0.00280,0.00296,0.00313),(0.00747,0.00220,0.03571,0.38694,0.00800,0.00836,0.00878)} {(0.00011,0.00002,0.00556,0.90964,0.00012,0.00013,0.00014),(0.00082,0.00020,0.01447,0.76295,0.00091,0.00096,0.00102),(0.00256,0.00066,0.02388,0.60400,0.00280,0.00296,0.00313),(0.00747,0.00220,0.03571,0.38694,0.00800,0.00836,0.00878)} {(0.00009,0.00002,0.00710,0.00007,0.00007,0.00701,0.00002),(0.00070,0.00014,0.01817,0.00050,0.00055,0.01757,0.00020),(0.00216,0.00045,0.02925,0.00156,0.00171,0.02750,0.00067),(0.00614,0.00148,0.04159,0.00454,0.00491,0.03719,0.00227)} {(0.00020,0.00003,0.00007,0.00012,0.90019,0.00014,0.00015),(0.00143,0.00020,0.00051,0.00089,0.74050,0.00105,0.00110),(0.00425,0.00066,0.00162,0.00272,0.57129,0.00319,0.00330),(0.01131,0.00213,0.00487,0.00766,0.34863,0.00877,0.00892)} {(0.00589,0.00001,0.00550,0.00006,0.00008,0.00010,0.00002),(0.01498,0.00005,0.01424,0.00044,0.00059,0.00076,0.00020),(0.02390,0.00018,0.02328,0.00137,0.00182,0.00232,0.00066),(0.03344,0.00069,0.03403,0.00404,0.00514,0.00640,0.00220)} {(0.00740,0.00001,0.00003,0.00806,0.00009,0.00012,0.00003),(0.01846,0.00004,0.00025,0.02004,0.00066,0.00084,0.00022),(0.02873,0.00016,0.00082,0.03103,0.00200,0.00252,0.00071),(0.03838,0.00062,0.00252,0.04091,0.00546,0.00674,0.00229)} {(0.00740,0.00001,0.00003,0.00806,0.00009,0.00012,0.00003),(0.01846,0.00004,0.00025,0.02004,0.00066,0.00084,0.00022),(0.02873,0.00016,0.00082,0.03103,0.00200,0.00252,0.00071),(0.03838,0.00062,0.00252,0.04091,0.00546,0.00674,0.00229)} ] +[1] CLV 6: [ {(0.00003,0.00001,0.00002,0.00000,0.00000,0.00000,0.00000),(0.00019,0.00004,0.00015,0.00001,0.00001,0.00002,0.00001),(0.00057,0.00015,0.00045,0.00005,0.00007,0.00009,0.00003),(0.00154,0.00048,0.00112,0.00026,0.00034,0.00042,0.00018)} {(0.01340,0.00000,0.00002,0.00004,0.00006,0.00633,0.00000),(0.02853,0.00002,0.00013,0.00026,0.00036,0.01410,0.00003),(0.03594,0.00006,0.00036,0.00068,0.00096,0.01893,0.00010),(0.03197,0.00017,0.00083,0.00150,0.00205,0.01922,0.00029)} {(0.00575,0.00002,0.00537,0.00010,0.00013,0.00016,0.00000),(0.01398,0.00017,0.01334,0.00073,0.00093,0.00116,0.00005),(0.02109,0.00056,0.02068,0.00217,0.00268,0.00336,0.00028),(0.02688,0.00186,0.02755,0.00577,0.00681,0.00843,0.00148)} {(0.00002,0.00001,0.87274,0.00002,0.00002,0.00003,0.00003),(0.00013,0.00005,0.67640,0.00015,0.00017,0.00018,0.00019),(0.00037,0.00014,0.47987,0.00043,0.00047,0.00050,0.00055),(0.00092,0.00036,0.24503,0.00106,0.00114,0.00121,0.00131)} {(0.00723,0.00002,0.00008,0.00782,0.00016,0.00020,0.00000),(0.01729,0.00019,0.00056,0.01840,0.00112,0.00139,0.00006),(0.02549,0.00062,0.00168,0.02658,0.00316,0.00391,0.00034),(0.03100,0.00189,0.00453,0.03116,0.00757,0.00930,0.00165)} {(0.00000,0.00001,0.00367,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00010,0.00869,0.00001,0.00001,0.00001,0.00001),(0.00002,0.00032,0.01263,0.00004,0.00005,0.00005,0.00007),(0.00014,0.00090,0.01478,0.00022,0.00024,0.00025,0.00034)} {(0.00011,0.00001,0.00003,0.00004,0.00005,0.83702,0.00000),(0.00072,0.00007,0.00017,0.00030,0.00033,0.60098,0.00003),(0.00187,0.00018,0.00045,0.00078,0.00087,0.38630,0.00010),(0.00390,0.00042,0.00104,0.00170,0.00189,0.16556,0.00029)} {(0.00002,0.00001,0.87274,0.00002,0.00002,0.00003,0.00003),(0.00013,0.00005,0.67640,0.00015,0.00017,0.00018,0.00019),(0.00037,0.00014,0.47987,0.00043,0.00047,0.00050,0.00055),(0.00092,0.00036,0.24503,0.00106,0.00114,0.00121,0.00131)} {(0.00003,0.00000,0.00000,0.00003,0.00000,0.00000,0.00000),(0.00023,0.00004,0.00001,0.00023,0.00001,0.00002,0.00001),(0.00066,0.00013,0.00003,0.00062,0.00007,0.00010,0.00003),(0.00167,0.00043,0.00016,0.00136,0.00035,0.00043,0.00018)} {(0.01340,0.00000,0.00002,0.00004,0.00006,0.00633,0.00000),(0.02853,0.00002,0.00013,0.00026,0.00036,0.01410,0.00003),(0.03594,0.00006,0.00036,0.00068,0.00096,0.01893,0.00010),(0.03197,0.00017,0.00083,0.00150,0.00205,0.01922,0.00029)} {(0.98862,0.97919,0.97538,0.96792,0.96613,0.98956,0.00095),(0.96655,0.94300,0.93336,0.91511,0.91102,0.96884,0.00808),(0.93621,0.89964,0.88435,0.85672,0.85112,0.93967,0.02871),(0.87845,0.83046,0.80948,0.77469,0.76907,0.88270,0.09909)} {(0.98862,0.97919,0.97538,0.96792,0.96613,0.98956,0.00095),(0.96655,0.94300,0.93336,0.91511,0.91102,0.96884,0.00808),(0.93621,0.89964,0.88435,0.85672,0.85112,0.93967,0.02871),(0.87845,0.83046,0.80948,0.77469,0.76907,0.88270,0.09909)} {(0.00001,0.00001,0.00003,0.00000,0.00000,0.00000,0.00000),(0.00007,0.00004,0.00022,0.00001,0.00001,0.00001,0.00001),(0.00023,0.00015,0.00068,0.00004,0.00005,0.00007,0.00003),(0.00063,0.00048,0.00183,0.00021,0.00026,0.00032,0.00018)} {(0.00006,0.00001,0.00006,0.00867,0.00004,0.00378,0.00001),(0.00038,0.00005,0.00041,0.01884,0.00027,0.00871,0.00010),(0.00105,0.00015,0.00111,0.02443,0.00077,0.01234,0.00030),(0.00249,0.00041,0.00255,0.02312,0.00187,0.01419,0.00086)} {(0.00005,0.00001,0.00007,0.00970,0.00365,0.00005,0.00005),(0.00036,0.00006,0.00045,0.02114,0.00839,0.00033,0.00035),(0.00099,0.00017,0.00124,0.02749,0.01185,0.00091,0.00096),(0.00237,0.00046,0.00286,0.02615,0.01363,0.00222,0.00231)} {(0.00000,0.00000,0.00672,0.00000,0.00000,0.00005,0.00000),(0.00002,0.00000,0.01555,0.00002,0.00002,0.00034,0.00001),(0.00011,0.00002,0.02186,0.00009,0.00010,0.00089,0.00006),(0.00050,0.00012,0.02397,0.00042,0.00046,0.00192,0.00030)} {(0.00009,0.00001,0.00003,0.00006,0.83187,0.00007,0.00007),(0.00061,0.00008,0.00021,0.00037,0.59077,0.00044,0.00047),(0.00160,0.00021,0.00056,0.00099,0.37475,0.00117,0.00122),(0.00343,0.00053,0.00132,0.00220,0.15764,0.00257,0.00262)} {(0.00549,0.00000,0.00003,0.00000,0.00000,0.00000,0.00000),(0.01225,0.00000,0.00022,0.00002,0.00003,0.00004,0.00000),(0.01650,0.00001,0.00062,0.00009,0.00015,0.00022,0.00002),(0.01691,0.00004,0.00149,0.00043,0.00063,0.00090,0.00014)} {(0.00004,0.00000,0.00007,0.00005,0.00000,0.00000,0.00000),(0.00030,0.00000,0.00051,0.00035,0.00002,0.00003,0.00001),(0.00081,0.00001,0.00142,0.00093,0.00012,0.00014,0.00006),(0.00177,0.00007,0.00323,0.00197,0.00050,0.00060,0.00030)} {(0.00004,0.00000,0.00007,0.00005,0.00000,0.00000,0.00000),(0.00030,0.00000,0.00051,0.00035,0.00002,0.00003,0.00001),(0.00081,0.00001,0.00142,0.00093,0.00012,0.00014,0.00006),(0.00177,0.00007,0.00323,0.00197,0.00050,0.00060,0.00030)} ] +[1] CLV 7: [ {(0.0000,0.0000,0.9252,0.0000,0.0001,0.0001,0.0001),(0.0003,0.0001,0.7999,0.0004,0.0004,0.0004,0.0004),(0.0010,0.0004,0.6577,0.0011,0.0012,0.0013,0.0014),(0.0030,0.0013,0.4484,0.0034,0.0037,0.0039,0.0041)} {(0.0002,0.0000,0.0001,0.0001,0.0001,0.9034,0.0000),(0.0016,0.0002,0.0004,0.0007,0.0008,0.7478,0.0001),(0.0048,0.0005,0.0013,0.0022,0.0024,0.5812,0.0003),(0.0124,0.0017,0.0039,0.0060,0.0066,0.3585,0.0012)} {(0.0074,0.0000,0.0000,0.0081,0.0001,0.0001,0.0000),(0.0185,0.0000,0.0003,0.0200,0.0007,0.0008,0.0002),(0.0287,0.0002,0.0008,0.0310,0.0020,0.0025,0.0007),(0.0384,0.0006,0.0025,0.0409,0.0055,0.0067,0.0023)} {(0.0000,0.0000,0.9252,0.0000,0.0001,0.0001,0.0001),(0.0003,0.0001,0.7999,0.0004,0.0004,0.0004,0.0004),(0.0010,0.0004,0.6577,0.0011,0.0012,0.0013,0.0014),(0.0030,0.0013,0.4484,0.0034,0.0037,0.0039,0.0041)} {(0.0000,0.0049,0.0000,0.0000,0.0044,0.0001,0.0001),(0.0002,0.0131,0.0003,0.0004,0.0113,0.0005,0.0006),(0.0007,0.0224,0.0008,0.0012,0.0181,0.0014,0.0020),(0.0024,0.0357,0.0027,0.0036,0.0255,0.0042,0.0057)} {(0.0001,0.0000,0.0000,0.0104,0.0076,0.0001,0.0001),(0.0008,0.0001,0.0004,0.0258,0.0188,0.0007,0.0008),(0.0024,0.0005,0.0011,0.0397,0.0289,0.0022,0.0023),(0.0067,0.0015,0.0035,0.0519,0.0379,0.0061,0.0063)} {(0.0002,0.0000,0.0001,0.0001,0.0001,0.9034,0.0000),(0.0016,0.0002,0.0004,0.0007,0.0008,0.7478,0.0001),(0.0048,0.0005,0.0013,0.0022,0.0024,0.5812,0.0003),(0.0124,0.0017,0.0039,0.0060,0.0066,0.3585,0.0012)} {(0.0000,0.0000,0.9252,0.0000,0.0001,0.0001,0.0001),(0.0003,0.0001,0.7999,0.0004,0.0004,0.0004,0.0004),(0.0010,0.0004,0.6577,0.0011,0.0012,0.0013,0.0014),(0.0030,0.0013,0.4484,0.0034,0.0037,0.0039,0.0041)} {(0.0059,0.0000,0.0055,0.0001,0.0001,0.0001,0.0000),(0.0150,0.0000,0.0142,0.0004,0.0006,0.0008,0.0002),(0.0239,0.0002,0.0233,0.0014,0.0018,0.0023,0.0007),(0.0334,0.0007,0.0340,0.0040,0.0051,0.0064,0.0022)} {(0.9061,0.0000,0.0000,0.0001,0.0001,0.0002,0.0000),(0.7541,0.0000,0.0003,0.0005,0.0009,0.0014,0.0001),(0.5904,0.0001,0.0008,0.0017,0.0027,0.0041,0.0003),(0.3689,0.0004,0.0026,0.0048,0.0072,0.0106,0.0012)} {(0.9936,0.9881,0.9859,0.9815,0.9804,0.9941,0.0018),(0.9814,0.9672,0.9614,0.9502,0.9476,0.9828,0.0133),(0.9649,0.9416,0.9320,0.9140,0.9101,0.9671,0.0422),(0.9328,0.8992,0.8848,0.8594,0.8546,0.9359,0.1264)} {(0.9936,0.9881,0.9859,0.9815,0.9804,0.9941,0.0018),(0.9814,0.9672,0.9614,0.9502,0.9476,0.9828,0.0133),(0.9649,0.9416,0.9320,0.9140,0.9101,0.9671,0.0422),(0.9328,0.8992,0.8848,0.8594,0.8546,0.9359,0.1264)} {(0.9061,0.0000,0.0000,0.0001,0.0001,0.0002,0.0000),(0.7541,0.0000,0.0003,0.0005,0.0009,0.0014,0.0001),(0.5904,0.0001,0.0008,0.0017,0.0027,0.0041,0.0003),(0.3689,0.0004,0.0026,0.0048,0.0072,0.0106,0.0012)} {(0.0000,0.0049,0.0000,0.0000,0.0044,0.0001,0.0001),(0.0002,0.0131,0.0003,0.0004,0.0113,0.0005,0.0006),(0.0007,0.0224,0.0008,0.0012,0.0181,0.0014,0.0020),(0.0024,0.0357,0.0027,0.0036,0.0255,0.0042,0.0057)} {(0.9936,0.9881,0.9859,0.9815,0.9804,0.9941,0.0018),(0.9814,0.9672,0.9614,0.9502,0.9476,0.9828,0.0133),(0.9649,0.9416,0.9320,0.9140,0.9101,0.9671,0.0422),(0.9328,0.8992,0.8848,0.8594,0.8546,0.9359,0.1264)} {(0.0000,0.0000,0.0055,0.0064,0.0001,0.0001,0.0001),(0.0004,0.0001,0.0142,0.0162,0.0004,0.0005,0.0005),(0.0012,0.0003,0.0231,0.0256,0.0013,0.0014,0.0015),(0.0035,0.0012,0.0332,0.0348,0.0039,0.0041,0.0043)} {(0.9936,0.9881,0.9859,0.9815,0.9804,0.9941,0.0018),(0.9814,0.9672,0.9614,0.9502,0.9476,0.9828,0.0133),(0.9649,0.9416,0.9320,0.9140,0.9101,0.9671,0.0422),(0.9328,0.8992,0.8848,0.8594,0.8546,0.9359,0.1264)} {(0.9061,0.0000,0.0000,0.0001,0.0001,0.0002,0.0000),(0.7541,0.0000,0.0003,0.0005,0.0009,0.0014,0.0001),(0.5904,0.0001,0.0008,0.0017,0.0027,0.0041,0.0003),(0.3689,0.0004,0.0026,0.0048,0.0072,0.0106,0.0012)} {(0.9061,0.0000,0.0000,0.0001,0.0001,0.0002,0.0000),(0.7541,0.0000,0.0003,0.0005,0.0009,0.0014,0.0001),(0.5904,0.0001,0.0008,0.0017,0.0027,0.0041,0.0003),(0.3689,0.0004,0.0026,0.0048,0.0072,0.0106,0.0012)} {(0.0002,0.0000,0.0001,0.0001,0.0001,0.9034,0.0000),(0.0016,0.0002,0.0004,0.0007,0.0008,0.7478,0.0001),(0.0048,0.0005,0.0013,0.0022,0.0024,0.5812,0.0003),(0.0124,0.0017,0.0039,0.0060,0.0066,0.3585,0.0012)} ] + + + TEST alpha(ncats) = 1.25( 4), mode = MEDIAN Rates: 0.18400 0.54086 1.03161 2.24353 @@ -442,7 +876,152 @@ Rates: 0.18400 0.54086 1.03161 2.24353 [1] CLV 7: [ {(0.0000,0.0000,0.9306,0.0000,0.0000,0.0000,0.0001),(0.0003,0.0001,0.8106,0.0003,0.0003,0.0004,0.0004),(0.0009,0.0003,0.6725,0.0010,0.0011,0.0012,0.0013),(0.0033,0.0014,0.4313,0.0037,0.0039,0.0042,0.0045)} {(0.0002,0.0000,0.0000,0.0001,0.0001,0.9103,0.0000),(0.0015,0.0001,0.0004,0.0006,0.0007,0.7608,0.0001),(0.0044,0.0005,0.0012,0.0020,0.0022,0.5981,0.0003),(0.0132,0.0018,0.0042,0.0064,0.0070,0.3416,0.0014)} {(0.0069,0.0000,0.0000,0.0075,0.0001,0.0001,0.0000),(0.0176,0.0000,0.0002,0.0191,0.0006,0.0008,0.0002),(0.0278,0.0001,0.0007,0.0300,0.0018,0.0023,0.0006),(0.0388,0.0007,0.0027,0.0413,0.0058,0.0072,0.0025)} {(0.0000,0.0000,0.9306,0.0000,0.0000,0.0000,0.0001),(0.0003,0.0001,0.8106,0.0003,0.0003,0.0004,0.0004),(0.0009,0.0003,0.6725,0.0010,0.0011,0.0012,0.0013),(0.0033,0.0014,0.4313,0.0037,0.0039,0.0042,0.0045)} {(0.0000,0.0045,0.0000,0.0000,0.0041,0.0001,0.0001),(0.0002,0.0124,0.0002,0.0003,0.0107,0.0004,0.0006),(0.0006,0.0214,0.0008,0.0011,0.0174,0.0013,0.0018),(0.0026,0.0368,0.0029,0.0039,0.0259,0.0045,0.0061)} {(0.0001,0.0000,0.0000,0.0097,0.0071,0.0001,0.0001),(0.0007,0.0001,0.0003,0.0245,0.0179,0.0007,0.0007),(0.0022,0.0004,0.0010,0.0384,0.0280,0.0020,0.0021),(0.0072,0.0016,0.0037,0.0524,0.0383,0.0066,0.0067)} {(0.0002,0.0000,0.0000,0.0001,0.0001,0.9103,0.0000),(0.0015,0.0001,0.0004,0.0006,0.0007,0.7608,0.0001),(0.0044,0.0005,0.0012,0.0020,0.0022,0.5981,0.0003),(0.0132,0.0018,0.0042,0.0064,0.0070,0.3416,0.0014)} {(0.0000,0.0000,0.9306,0.0000,0.0000,0.0000,0.0001),(0.0003,0.0001,0.8106,0.0003,0.0003,0.0004,0.0004),(0.0009,0.0003,0.6725,0.0010,0.0011,0.0012,0.0013),(0.0033,0.0014,0.4313,0.0037,0.0039,0.0042,0.0045)} {(0.0055,0.0000,0.0051,0.0000,0.0001,0.0001,0.0000),(0.0142,0.0000,0.0135,0.0004,0.0005,0.0007,0.0002),(0.0230,0.0002,0.0224,0.0012,0.0017,0.0021,0.0006),(0.0340,0.0008,0.0347,0.0044,0.0055,0.0068,0.0024)} {(0.9129,0.0000,0.0000,0.0001,0.0001,0.0002,0.0000),(0.7669,0.0000,0.0002,0.0005,0.0008,0.0013,0.0001),(0.6071,0.0001,0.0007,0.0015,0.0025,0.0038,0.0003),(0.3519,0.0004,0.0028,0.0051,0.0077,0.0113,0.0013)} {(0.9941,0.9890,0.9869,0.9829,0.9819,0.9946,0.0015),(0.9825,0.9690,0.9635,0.9529,0.9504,0.9838,0.0119),(0.9667,0.9444,0.9352,0.9179,0.9141,0.9689,0.0383),(0.9296,0.8953,0.8806,0.8548,0.8501,0.9328,0.1362)} {(0.9941,0.9890,0.9869,0.9829,0.9819,0.9946,0.0015),(0.9825,0.9690,0.9635,0.9529,0.9504,0.9838,0.0119),(0.9667,0.9444,0.9352,0.9179,0.9141,0.9689,0.0383),(0.9296,0.8953,0.8806,0.8548,0.8501,0.9328,0.1362)} {(0.9129,0.0000,0.0000,0.0001,0.0001,0.0002,0.0000),(0.7669,0.0000,0.0002,0.0005,0.0008,0.0013,0.0001),(0.6071,0.0001,0.0007,0.0015,0.0025,0.0038,0.0003),(0.3519,0.0004,0.0028,0.0051,0.0077,0.0113,0.0013)} {(0.0000,0.0045,0.0000,0.0000,0.0041,0.0001,0.0001),(0.0002,0.0124,0.0002,0.0003,0.0107,0.0004,0.0006),(0.0006,0.0214,0.0008,0.0011,0.0174,0.0013,0.0018),(0.0026,0.0368,0.0029,0.0039,0.0259,0.0045,0.0061)} {(0.9941,0.9890,0.9869,0.9829,0.9819,0.9946,0.0015),(0.9825,0.9690,0.9635,0.9529,0.9504,0.9838,0.0119),(0.9667,0.9444,0.9352,0.9179,0.9141,0.9689,0.0383),(0.9296,0.8953,0.8806,0.8548,0.8501,0.9328,0.1362)} {(0.0000,0.0000,0.0051,0.0060,0.0000,0.0001,0.0001),(0.0003,0.0001,0.0135,0.0155,0.0004,0.0004,0.0004),(0.0011,0.0003,0.0222,0.0247,0.0012,0.0013,0.0014),(0.0037,0.0013,0.0339,0.0353,0.0042,0.0044,0.0046)} {(0.9941,0.9890,0.9869,0.9829,0.9819,0.9946,0.0015),(0.9825,0.9690,0.9635,0.9529,0.9504,0.9838,0.0119),(0.9667,0.9444,0.9352,0.9179,0.9141,0.9689,0.0383),(0.9296,0.8953,0.8806,0.8548,0.8501,0.9328,0.1362)} {(0.9129,0.0000,0.0000,0.0001,0.0001,0.0002,0.0000),(0.7669,0.0000,0.0002,0.0005,0.0008,0.0013,0.0001),(0.6071,0.0001,0.0007,0.0015,0.0025,0.0038,0.0003),(0.3519,0.0004,0.0028,0.0051,0.0077,0.0113,0.0013)} {(0.9129,0.0000,0.0000,0.0001,0.0001,0.0002,0.0000),(0.7669,0.0000,0.0002,0.0005,0.0008,0.0013,0.0001),(0.6071,0.0001,0.0007,0.0015,0.0025,0.0038,0.0003),(0.3519,0.0004,0.0028,0.0051,0.0077,0.0113,0.0013)} {(0.0002,0.0000,0.0000,0.0001,0.0001,0.9103,0.0000),(0.0015,0.0001,0.0004,0.0006,0.0007,0.7608,0.0001),(0.0044,0.0005,0.0012,0.0020,0.0022,0.5981,0.0003),(0.0132,0.0018,0.0042,0.0064,0.0070,0.3416,0.0014)} ] - TEST alpha(ncats) = 100.00( 4) + TEST alpha(ncats) = 100.00( 4), mode = MEAN + +Rates: 0.88707 0.96613 1.02980 1.11700 + +[2] P-matrix for branch length 0.100000 ++0.8966 +0.0040 +0.0135 +0.0167 +0.0299 +0.0321 +0.0072 ++0.0035 +0.9468 +0.0082 +0.0075 +0.0110 +0.0101 +0.0130 ++0.0124 +0.0089 +0.9174 +0.0124 +0.0177 +0.0159 +0.0153 ++0.0182 +0.0096 +0.0147 +0.8933 +0.0234 +0.0209 +0.0199 ++0.0239 +0.0102 +0.0153 +0.0172 +0.8903 +0.0222 +0.0210 ++0.0297 +0.0108 +0.0159 +0.0177 +0.0256 +0.8937 +0.0066 ++0.0072 +0.0151 +0.0166 +0.0182 +0.0262 +0.0072 +0.9095 + ++0.8881 +0.0044 +0.0146 +0.0181 +0.0323 +0.0347 +0.0078 ++0.0038 +0.9423 +0.0089 +0.0082 +0.0119 +0.0109 +0.0140 ++0.0135 +0.0096 +0.9104 +0.0135 +0.0192 +0.0173 +0.0166 ++0.0197 +0.0104 +0.0159 +0.8844 +0.0254 +0.0226 +0.0215 ++0.0258 +0.0111 +0.0166 +0.0186 +0.8812 +0.0240 +0.0227 ++0.0320 +0.0118 +0.0173 +0.0192 +0.0277 +0.8849 +0.0072 ++0.0078 +0.0164 +0.0180 +0.0197 +0.0283 +0.0078 +0.9020 + ++0.8812 +0.0047 +0.0155 +0.0192 +0.0342 +0.0368 +0.0084 ++0.0040 +0.9386 +0.0095 +0.0087 +0.0126 +0.0116 +0.0149 ++0.0143 +0.0102 +0.9049 +0.0143 +0.0203 +0.0183 +0.0176 ++0.0209 +0.0110 +0.0169 +0.8774 +0.0269 +0.0240 +0.0228 ++0.0274 +0.0118 +0.0176 +0.0197 +0.8740 +0.0254 +0.0240 ++0.0339 +0.0125 +0.0183 +0.0203 +0.0293 +0.8779 +0.0077 ++0.0084 +0.0174 +0.0191 +0.0209 +0.0300 +0.0084 +0.8959 + ++0.8720 +0.0051 +0.0168 +0.0207 +0.0368 +0.0395 +0.0091 ++0.0044 +0.9336 +0.0103 +0.0094 +0.0137 +0.0125 +0.0161 ++0.0155 +0.0111 +0.8973 +0.0155 +0.0219 +0.0198 +0.0190 ++0.0226 +0.0119 +0.0183 +0.8678 +0.0290 +0.0259 +0.0245 ++0.0294 +0.0128 +0.0190 +0.0213 +0.8643 +0.0274 +0.0259 ++0.0365 +0.0135 +0.0198 +0.0219 +0.0316 +0.8684 +0.0084 ++0.0091 +0.0188 +0.0206 +0.0225 +0.0323 +0.0091 +0.8877 + + +[2] P-matrix for branch length 0.200000 ++0.8061 +0.0085 +0.0258 +0.0313 +0.0550 +0.0588 +0.0144 ++0.0073 +0.8971 +0.0160 +0.0146 +0.0211 +0.0193 +0.0246 ++0.0238 +0.0173 +0.8428 +0.0237 +0.0335 +0.0301 +0.0289 ++0.0342 +0.0186 +0.0280 +0.7997 +0.0438 +0.0390 +0.0369 ++0.0440 +0.0197 +0.0290 +0.0321 +0.7952 +0.0412 +0.0387 ++0.0543 +0.0208 +0.0301 +0.0330 +0.0475 +0.8009 +0.0134 ++0.0144 +0.0287 +0.0313 +0.0339 +0.0484 +0.0146 +0.8287 + ++0.7912 +0.0093 +0.0279 +0.0337 +0.0591 +0.0631 +0.0157 ++0.0080 +0.8885 +0.0174 +0.0158 +0.0229 +0.0208 +0.0266 ++0.0257 +0.0187 +0.8303 +0.0255 +0.0362 +0.0324 +0.0311 ++0.0368 +0.0201 +0.0302 +0.7842 +0.0471 +0.0419 +0.0397 ++0.0473 +0.0214 +0.0313 +0.0345 +0.7796 +0.0442 +0.0416 ++0.0582 +0.0224 +0.0324 +0.0355 +0.0511 +0.7857 +0.0147 ++0.0157 +0.0310 +0.0337 +0.0364 +0.0520 +0.0159 +0.8152 + ++0.7795 +0.0100 +0.0295 +0.0356 +0.0622 +0.0664 +0.0167 ++0.0085 +0.8817 +0.0185 +0.0168 +0.0243 +0.0221 +0.0282 ++0.0273 +0.0199 +0.8204 +0.0270 +0.0383 +0.0343 +0.0329 ++0.0388 +0.0213 +0.0319 +0.7720 +0.0497 +0.0442 +0.0419 ++0.0498 +0.0227 +0.0332 +0.0365 +0.7674 +0.0467 +0.0439 ++0.0613 +0.0238 +0.0343 +0.0374 +0.0538 +0.7737 +0.0156 ++0.0167 +0.0328 +0.0356 +0.0384 +0.0548 +0.0170 +0.8046 + ++0.7637 +0.0109 +0.0318 +0.0381 +0.0665 +0.0708 +0.0182 ++0.0093 +0.8725 +0.0199 +0.0181 +0.0261 +0.0237 +0.0302 ++0.0293 +0.0215 +0.8070 +0.0290 +0.0411 +0.0368 +0.0353 ++0.0416 +0.0230 +0.0343 +0.7557 +0.0532 +0.0473 +0.0448 ++0.0532 +0.0244 +0.0356 +0.0390 +0.7510 +0.0499 +0.0469 ++0.0654 +0.0256 +0.0368 +0.0400 +0.0576 +0.7576 +0.0170 ++0.0182 +0.0353 +0.0382 +0.0411 +0.0586 +0.0184 +0.7903 + + +[2] P-matrix for branch length 1.000000 ++0.3866 +0.0490 +0.0925 +0.0975 +0.1535 +0.1553 +0.0655 ++0.0420 +0.5975 +0.0653 +0.0578 +0.0813 +0.0708 +0.0852 ++0.0854 +0.0703 +0.4554 +0.0814 +0.1133 +0.0997 +0.0946 ++0.1063 +0.0736 +0.0963 +0.3644 +0.1334 +0.1169 +0.1092 ++0.1228 +0.0758 +0.0982 +0.0978 +0.3733 +0.1211 +0.1110 ++0.1434 +0.0763 +0.0997 +0.0989 +0.1397 +0.3782 +0.0639 ++0.0655 +0.0994 +0.1024 +0.1001 +0.1387 +0.0692 +0.4246 + ++0.3614 +0.0534 +0.0973 +0.1012 +0.1579 +0.1588 +0.0700 ++0.0458 +0.5729 +0.0695 +0.0614 +0.0861 +0.0749 +0.0894 ++0.0898 +0.0748 +0.4287 +0.0854 +0.1185 +0.1042 +0.0987 ++0.1104 +0.0782 +0.1009 +0.3383 +0.1382 +0.1211 +0.1129 ++0.1263 +0.0804 +0.1027 +0.1014 +0.3496 +0.1251 +0.1145 ++0.1466 +0.0806 +0.1042 +0.1024 +0.1444 +0.3534 +0.0685 ++0.0700 +0.1043 +0.1069 +0.1035 +0.1431 +0.0742 +0.3980 + ++0.3430 +0.0569 +0.1008 +0.1039 +0.1609 +0.1610 +0.0735 ++0.0488 +0.5540 +0.0727 +0.0642 +0.0898 +0.0779 +0.0925 ++0.0930 +0.0783 +0.4089 +0.0882 +0.1224 +0.1074 +0.1017 ++0.1133 +0.0817 +0.1043 +0.3195 +0.1417 +0.1240 +0.1155 ++0.1287 +0.0838 +0.1061 +0.1039 +0.3325 +0.1280 +0.1169 ++0.1486 +0.0839 +0.1074 +0.1049 +0.1477 +0.3354 +0.0720 ++0.0735 +0.1079 +0.1102 +0.1059 +0.1462 +0.0780 +0.3783 + ++0.3204 +0.0616 +0.1053 +0.1071 +0.1643 +0.1633 +0.0780 ++0.0528 +0.5296 +0.0769 +0.0678 +0.0946 +0.0819 +0.0964 ++0.0972 +0.0829 +0.3839 +0.0919 +0.1272 +0.1115 +0.1054 ++0.1168 +0.0863 +0.1086 +0.2963 +0.1459 +0.1275 +0.1186 ++0.1314 +0.0883 +0.1103 +0.1070 +0.3117 +0.1314 +0.1198 ++0.1507 +0.0882 +0.1115 +0.1079 +0.1516 +0.3134 +0.0766 ++0.0780 +0.1124 +0.1142 +0.1087 +0.1498 +0.0830 +0.3538 + + +[2] P-matrix for branch length 1.000000 ++0.3866 +0.0490 +0.0925 +0.0975 +0.1535 +0.1553 +0.0655 ++0.0420 +0.5975 +0.0653 +0.0578 +0.0813 +0.0708 +0.0852 ++0.0854 +0.0703 +0.4554 +0.0814 +0.1133 +0.0997 +0.0946 ++0.1063 +0.0736 +0.0963 +0.3644 +0.1334 +0.1169 +0.1092 ++0.1228 +0.0758 +0.0982 +0.0978 +0.3733 +0.1211 +0.1110 ++0.1434 +0.0763 +0.0997 +0.0989 +0.1397 +0.3782 +0.0639 ++0.0655 +0.0994 +0.1024 +0.1001 +0.1387 +0.0692 +0.4246 + ++0.3614 +0.0534 +0.0973 +0.1012 +0.1579 +0.1588 +0.0700 ++0.0458 +0.5729 +0.0695 +0.0614 +0.0861 +0.0749 +0.0894 ++0.0898 +0.0748 +0.4287 +0.0854 +0.1185 +0.1042 +0.0987 ++0.1104 +0.0782 +0.1009 +0.3383 +0.1382 +0.1211 +0.1129 ++0.1263 +0.0804 +0.1027 +0.1014 +0.3496 +0.1251 +0.1145 ++0.1466 +0.0806 +0.1042 +0.1024 +0.1444 +0.3534 +0.0685 ++0.0700 +0.1043 +0.1069 +0.1035 +0.1431 +0.0742 +0.3980 + ++0.3430 +0.0569 +0.1008 +0.1039 +0.1609 +0.1610 +0.0735 ++0.0488 +0.5540 +0.0727 +0.0642 +0.0898 +0.0779 +0.0925 ++0.0930 +0.0783 +0.4089 +0.0882 +0.1224 +0.1074 +0.1017 ++0.1133 +0.0817 +0.1043 +0.3195 +0.1417 +0.1240 +0.1155 ++0.1287 +0.0838 +0.1061 +0.1039 +0.3325 +0.1280 +0.1169 ++0.1486 +0.0839 +0.1074 +0.1049 +0.1477 +0.3354 +0.0720 ++0.0735 +0.1079 +0.1102 +0.1059 +0.1462 +0.0780 +0.3783 + ++0.3204 +0.0616 +0.1053 +0.1071 +0.1643 +0.1633 +0.0780 ++0.0528 +0.5296 +0.0769 +0.0678 +0.0946 +0.0819 +0.0964 ++0.0972 +0.0829 +0.3839 +0.0919 +0.1272 +0.1115 +0.1054 ++0.1168 +0.0863 +0.1086 +0.2963 +0.1459 +0.1275 +0.1186 ++0.1314 +0.0883 +0.1103 +0.1070 +0.3117 +0.1314 +0.1198 ++0.1507 +0.0882 +0.1115 +0.1079 +0.1516 +0.3134 +0.0766 ++0.0780 +0.1124 +0.1142 +0.1087 +0.1498 +0.0830 +0.3538 + + +[2] CLV 5: [ {(0.00022,0.01438,0.01455,0.00052,0.00057,0.00062,0.00090),(0.00026,0.01544,0.01554,0.00061,0.00067,0.00073,0.00105),(0.00029,0.01627,0.01631,0.00068,0.00075,0.00082,0.00117),(0.00035,0.01738,0.01731,0.00079,0.00087,0.00094,0.00135)} {(0.64985,0.00005,0.00057,0.00117,0.00194,0.00295,0.00021),(0.62605,0.00006,0.00066,0.00135,0.00223,0.00339,0.00025),(0.60759,0.00007,0.00074,0.00151,0.00248,0.00376,0.00028),(0.58331,0.00009,0.00086,0.00173,0.00283,0.00428,0.00033)} {(0.02079,0.00012,0.02006,0.00096,0.00128,0.00163,0.00045),(0.02206,0.00014,0.02136,0.00111,0.00148,0.00189,0.00053),(0.02302,0.00016,0.02236,0.00124,0.00165,0.00210,0.00060),(0.02426,0.00019,0.02366,0.00143,0.00189,0.00241,0.00069)} {(0.00067,0.00026,0.71031,0.00078,0.00084,0.00091,0.00098),(0.00078,0.00030,0.68937,0.00091,0.00098,0.00105,0.00114),(0.00087,0.00034,0.67301,0.00102,0.00110,0.00118,0.00127),(0.00101,0.00040,0.65129,0.00118,0.00127,0.00135,0.00146)} {(0.02524,0.00011,0.00056,0.02732,0.00141,0.00179,0.00049),(0.02668,0.00013,0.00066,0.02884,0.00163,0.00206,0.00057),(0.02776,0.00014,0.00074,0.02999,0.00182,0.00229,0.00064),(0.02913,0.00017,0.00085,0.03145,0.00208,0.00262,0.00075)} {(0.00022,0.01438,0.01455,0.00052,0.00057,0.00062,0.00090),(0.00026,0.01544,0.01554,0.00061,0.00067,0.00073,0.00105),(0.00029,0.01627,0.01631,0.00068,0.00075,0.00082,0.00117),(0.00035,0.01738,0.01731,0.00079,0.00087,0.00094,0.00135)} {(0.00346,0.00037,0.00091,0.00152,0.00169,0.64152,0.00021),(0.00398,0.00043,0.00105,0.00176,0.00196,0.61734,0.00025),(0.00441,0.00049,0.00118,0.00195,0.00218,0.59862,0.00029),(0.00502,0.00056,0.00135,0.00224,0.00249,0.57402,0.00034)} {(0.00067,0.00026,0.71031,0.00078,0.00084,0.00091,0.00098),(0.00078,0.00030,0.68937,0.00091,0.00098,0.00105,0.00114),(0.00087,0.00034,0.67301,0.00102,0.00110,0.00118,0.00127),(0.00101,0.00040,0.65129,0.00118,0.00127,0.00135,0.00146)} {(0.00027,0.01308,0.00041,0.01484,0.00063,0.00068,0.00097),(0.00031,0.01403,0.00048,0.01576,0.00074,0.00080,0.00113),(0.00036,0.01478,0.00054,0.01647,0.00083,0.00089,0.00126),(0.00042,0.01577,0.00062,0.01739,0.00095,0.00102,0.00145)} {(0.64985,0.00005,0.00057,0.00117,0.00194,0.00295,0.00021),(0.62605,0.00006,0.00066,0.00135,0.00223,0.00339,0.00025),(0.60759,0.00007,0.00074,0.00151,0.00248,0.00376,0.00028),(0.58331,0.00009,0.00086,0.00173,0.00283,0.00428,0.00033)} {(0.97136,0.95133,0.94309,0.92750,0.92402,0.97330,0.02934),(0.96883,0.94751,0.93872,0.92216,0.91850,0.97089,0.03414),(0.96680,0.94449,0.93527,0.91798,0.91418,0.96895,0.03819),(0.96403,0.94043,0.93066,0.91241,0.90845,0.96629,0.04399)} {(0.97136,0.95133,0.94309,0.92750,0.92402,0.97330,0.02934),(0.96883,0.94751,0.93872,0.92216,0.91850,0.97089,0.03414),(0.96680,0.94449,0.93527,0.91798,0.91418,0.96895,0.03819),(0.96403,0.94043,0.93066,0.91241,0.90845,0.96629,0.04399)} {(0.00683,0.00651,0.00041,0.00063,0.00087,0.00113,0.00041),(0.00736,0.00708,0.00048,0.00074,0.00101,0.00131,0.00049),(0.00777,0.00754,0.00054,0.00083,0.00113,0.00146,0.00055),(0.00833,0.00815,0.00063,0.00096,0.00130,0.00167,0.00064)} {(0.00179,0.00045,0.02050,0.66182,0.00196,0.00208,0.00220),(0.00208,0.00052,0.02186,0.63868,0.00228,0.00241,0.00255),(0.00232,0.00059,0.02291,0.62072,0.00254,0.00268,0.00284),(0.00267,0.00069,0.02428,0.59707,0.00291,0.00307,0.00326)} {(0.00179,0.00045,0.02050,0.66182,0.00196,0.00208,0.00220),(0.00208,0.00052,0.02186,0.63868,0.00228,0.00241,0.00255),(0.00232,0.00059,0.02291,0.62072,0.00254,0.00268,0.00284),(0.00267,0.00069,0.02428,0.59707,0.00291,0.00307,0.00326)} {(0.00152,0.00031,0.02536,0.00109,0.00120,0.02410,0.00046),(0.00176,0.00036,0.02694,0.00126,0.00139,0.02549,0.00054),(0.00196,0.00041,0.02814,0.00141,0.00155,0.02654,0.00060),(0.00225,0.00047,0.02970,0.00162,0.00178,0.02788,0.00070)} {(0.00303,0.00045,0.00112,0.00192,0.63233,0.00226,0.00235),(0.00349,0.00052,0.00131,0.00222,0.60783,0.00261,0.00271),(0.00387,0.00059,0.00146,0.00247,0.58888,0.00290,0.00301),(0.00442,0.00068,0.00169,0.00283,0.56402,0.00332,0.00343)} {(0.02079,0.00012,0.02006,0.00096,0.00128,0.00163,0.00045),(0.02206,0.00014,0.02136,0.00111,0.00148,0.00189,0.00053),(0.02302,0.00016,0.02236,0.00124,0.00165,0.00210,0.00060),(0.02426,0.00019,0.02366,0.00143,0.00189,0.00241,0.00069)} {(0.02524,0.00011,0.00056,0.02732,0.00141,0.00179,0.00049),(0.02668,0.00013,0.00066,0.02884,0.00163,0.00206,0.00057),(0.02776,0.00014,0.00074,0.02999,0.00182,0.00229,0.00064),(0.02913,0.00017,0.00085,0.03145,0.00208,0.00262,0.00075)} {(0.02524,0.00011,0.00056,0.02732,0.00141,0.00179,0.00049),(0.02668,0.00013,0.00066,0.02884,0.00163,0.00206,0.00057),(0.02776,0.00014,0.00074,0.02999,0.00182,0.00229,0.00064),(0.02913,0.00017,0.00085,0.03145,0.00208,0.00262,0.00075)} ] +[2] CLV 6: [ {(0.00040,0.00010,0.00032,0.00003,0.00004,0.00005,0.00002),(0.00047,0.00012,0.00037,0.00004,0.00005,0.00007,0.00002),(0.00052,0.00013,0.00041,0.00004,0.00006,0.00008,0.00003),(0.00060,0.00015,0.00046,0.00005,0.00007,0.00010,0.00004)} {(0.03430,0.00005,0.00026,0.00051,0.00071,0.01762,0.00007),(0.03510,0.00005,0.00030,0.00057,0.00081,0.01820,0.00008),(0.03558,0.00006,0.00033,0.00063,0.00088,0.01860,0.00009),(0.03605,0.00007,0.00037,0.00070,0.00099,0.01906,0.00011)} {(0.01875,0.00038,0.01819,0.00154,0.00193,0.00242,0.00016),(0.01972,0.00045,0.01922,0.00178,0.00221,0.00277,0.00021),(0.02045,0.00050,0.01999,0.00197,0.00245,0.00307,0.00024),(0.02136,0.00059,0.02097,0.00225,0.00278,0.00348,0.00030)} {(0.00026,0.00010,0.54924,0.00031,0.00034,0.00037,0.00040),(0.00030,0.00011,0.52117,0.00036,0.00039,0.00042,0.00045),(0.00033,0.00013,0.49967,0.00040,0.00043,0.00046,0.00050),(0.00038,0.00014,0.47173,0.00045,0.00048,0.00052,0.00057)} {(0.02286,0.00043,0.00120,0.02403,0.00230,0.00284,0.00020),(0.02397,0.00050,0.00138,0.02511,0.00262,0.00325,0.00025),(0.02478,0.00056,0.00153,0.02589,0.00289,0.00358,0.00030),(0.02578,0.00064,0.00175,0.02685,0.00327,0.00404,0.00037)} {(0.00001,0.00022,0.01139,0.00002,0.00003,0.00003,0.00004),(0.00002,0.00026,0.01192,0.00003,0.00003,0.00004,0.00005),(0.00002,0.00029,0.01229,0.00004,0.00004,0.00004,0.00006),(0.00002,0.00033,0.01276,0.00004,0.00005,0.00005,0.00007)} {(0.00140,0.00013,0.00034,0.00058,0.00065,0.45935,0.00007),(0.00158,0.00015,0.00038,0.00066,0.00074,0.42941,0.00008),(0.00173,0.00017,0.00042,0.00072,0.00081,0.40682,0.00009),(0.00193,0.00019,0.00047,0.00080,0.00090,0.37794,0.00011)} {(0.00026,0.00010,0.54924,0.00031,0.00034,0.00037,0.00040),(0.00030,0.00011,0.52117,0.00036,0.00039,0.00042,0.00045),(0.00033,0.00013,0.49967,0.00040,0.00043,0.00046,0.00050),(0.00038,0.00014,0.47173,0.00045,0.00048,0.00052,0.00057)} {(0.00048,0.00009,0.00002,0.00046,0.00004,0.00006,0.00002),(0.00055,0.00011,0.00002,0.00052,0.00005,0.00007,0.00003),(0.00061,0.00012,0.00003,0.00057,0.00006,0.00008,0.00003),(0.00069,0.00014,0.00003,0.00064,0.00008,0.00010,0.00004)} {(0.03430,0.00005,0.00026,0.00051,0.00071,0.01762,0.00007),(0.03510,0.00005,0.00030,0.00057,0.00081,0.01820,0.00008),(0.03558,0.00006,0.00033,0.00063,0.00088,0.01860,0.00009),(0.03605,0.00007,0.00037,0.00070,0.00099,0.01906,0.00011)} {(0.94816,0.91599,0.90266,0.87811,0.87294,0.95124,0.01914),(0.94352,0.90953,0.89540,0.86957,0.86421,0.94675,0.02264),(0.93979,0.90444,0.88971,0.86292,0.85743,0.94314,0.02565),(0.93470,0.89763,0.88212,0.85414,0.84851,0.93820,0.03004)} {(0.94816,0.91599,0.90266,0.87811,0.87294,0.95124,0.01914),(0.94352,0.90953,0.89540,0.86957,0.86421,0.94675,0.02264),(0.93979,0.90444,0.88971,0.86292,0.85743,0.94314,0.02565),(0.93470,0.89763,0.88212,0.85414,0.84851,0.93820,0.03004)} {(0.00016,0.00010,0.00048,0.00002,0.00003,0.00004,0.00002),(0.00019,0.00012,0.00055,0.00003,0.00004,0.00005,0.00002),(0.00021,0.00013,0.00062,0.00003,0.00005,0.00006,0.00003),(0.00024,0.00015,0.00070,0.00004,0.00006,0.00007,0.00003)} {(0.00077,0.00011,0.00082,0.02305,0.00056,0.01123,0.00021),(0.00088,0.00012,0.00093,0.02369,0.00064,0.01170,0.00024),(0.00096,0.00014,0.00102,0.02411,0.00070,0.01204,0.00027),(0.00109,0.00016,0.00115,0.02455,0.00080,0.01245,0.00031)} {(0.00072,0.00012,0.00091,0.02590,0.01080,0.00067,0.00070),(0.00082,0.00014,0.00104,0.02664,0.01125,0.00076,0.00080),(0.00090,0.00015,0.00114,0.02711,0.01157,0.00084,0.00088),(0.00102,0.00017,0.00128,0.02762,0.01196,0.00095,0.00100)} {(0.00007,0.00001,0.01998,0.00005,0.00006,0.00066,0.00003),(0.00008,0.00002,0.02079,0.00007,0.00007,0.00075,0.00004),(0.00010,0.00002,0.02137,0.00008,0.00009,0.00082,0.00005),(0.00012,0.00002,0.02205,0.00010,0.00011,0.00092,0.00006)} {(0.00120,0.00016,0.00041,0.00073,0.44783,0.00087,0.00091),(0.00135,0.00018,0.00047,0.00083,0.41782,0.00099,0.00103),(0.00148,0.00020,0.00052,0.00091,0.39523,0.00108,0.00113),(0.00165,0.00022,0.00058,0.00102,0.36641,0.00121,0.00126)} {(0.01533,0.00000,0.00045,0.00005,0.00009,0.00013,0.00001),(0.01585,0.00000,0.00051,0.00007,0.00011,0.00016,0.00002),(0.01621,0.00000,0.00056,0.00008,0.00013,0.00019,0.00002),(0.01661,0.00001,0.00064,0.00010,0.00016,0.00023,0.00003)} {(0.00060,0.00001,0.00104,0.00070,0.00007,0.00009,0.00004),(0.00068,0.00001,0.00118,0.00079,0.00009,0.00011,0.00005),(0.00074,0.00001,0.00130,0.00086,0.00010,0.00012,0.00005),(0.00083,0.00001,0.00146,0.00096,0.00012,0.00015,0.00007)} {(0.00060,0.00001,0.00104,0.00070,0.00007,0.00009,0.00004),(0.00068,0.00001,0.00118,0.00079,0.00009,0.00011,0.00005),(0.00074,0.00001,0.00130,0.00086,0.00010,0.00012,0.00005),(0.00083,0.00001,0.00146,0.00096,0.00012,0.00015,0.00007)} ] +[2] CLV 7: [ {(0.0007,0.0003,0.7103,0.0008,0.0008,0.0009,0.0010),(0.0008,0.0003,0.6894,0.0009,0.0010,0.0011,0.0011),(0.0009,0.0003,0.6730,0.0010,0.0011,0.0012,0.0013),(0.0010,0.0004,0.6513,0.0012,0.0013,0.0014,0.0015)} {(0.0035,0.0004,0.0009,0.0015,0.0017,0.6415,0.0002),(0.0040,0.0004,0.0011,0.0018,0.0020,0.6173,0.0003),(0.0044,0.0005,0.0012,0.0020,0.0022,0.5986,0.0003),(0.0050,0.0006,0.0014,0.0022,0.0025,0.5740,0.0003)} {(0.0252,0.0001,0.0006,0.0273,0.0014,0.0018,0.0005),(0.0267,0.0001,0.0007,0.0288,0.0016,0.0021,0.0006),(0.0278,0.0001,0.0007,0.0300,0.0018,0.0023,0.0006),(0.0291,0.0002,0.0009,0.0314,0.0021,0.0026,0.0007)} {(0.0007,0.0003,0.7103,0.0008,0.0008,0.0009,0.0010),(0.0008,0.0003,0.6894,0.0009,0.0010,0.0011,0.0011),(0.0009,0.0003,0.6730,0.0010,0.0011,0.0012,0.0013),(0.0010,0.0004,0.6513,0.0012,0.0013,0.0014,0.0015)} {(0.0005,0.0190,0.0006,0.0008,0.0157,0.0010,0.0014),(0.0005,0.0203,0.0007,0.0009,0.0167,0.0011,0.0016),(0.0006,0.0214,0.0008,0.0011,0.0174,0.0013,0.0018),(0.0007,0.0228,0.0009,0.0012,0.0183,0.0015,0.0021)} {(0.0017,0.0003,0.0008,0.0350,0.0255,0.0016,0.0016),(0.0020,0.0004,0.0009,0.0369,0.0269,0.0018,0.0019),(0.0022,0.0004,0.0010,0.0384,0.0280,0.0020,0.0021),(0.0025,0.0005,0.0012,0.0402,0.0293,0.0023,0.0024)} {(0.0035,0.0004,0.0009,0.0015,0.0017,0.6415,0.0002),(0.0040,0.0004,0.0011,0.0018,0.0020,0.6173,0.0003),(0.0044,0.0005,0.0012,0.0020,0.0022,0.5986,0.0003),(0.0050,0.0006,0.0014,0.0022,0.0025,0.5740,0.0003)} {(0.0007,0.0003,0.7103,0.0008,0.0008,0.0009,0.0010),(0.0008,0.0003,0.6894,0.0009,0.0010,0.0011,0.0011),(0.0009,0.0003,0.6730,0.0010,0.0011,0.0012,0.0013),(0.0010,0.0004,0.6513,0.0012,0.0013,0.0014,0.0015)} {(0.0208,0.0001,0.0201,0.0010,0.0013,0.0016,0.0005),(0.0221,0.0001,0.0214,0.0011,0.0015,0.0019,0.0005),(0.0230,0.0002,0.0224,0.0012,0.0017,0.0021,0.0006),(0.0243,0.0002,0.0237,0.0014,0.0019,0.0024,0.0007)} {(0.6499,0.0001,0.0006,0.0012,0.0019,0.0030,0.0002),(0.6260,0.0001,0.0007,0.0014,0.0022,0.0034,0.0002),(0.6076,0.0001,0.0007,0.0015,0.0025,0.0038,0.0003),(0.5833,0.0001,0.0009,0.0017,0.0028,0.0043,0.0003)} {(0.9714,0.9513,0.9431,0.9275,0.9240,0.9733,0.0293),(0.9688,0.9475,0.9387,0.9222,0.9185,0.9709,0.0341),(0.9668,0.9445,0.9353,0.9180,0.9142,0.9689,0.0382),(0.9640,0.9404,0.9307,0.9124,0.9084,0.9663,0.0440)} {(0.9714,0.9513,0.9431,0.9275,0.9240,0.9733,0.0293),(0.9688,0.9475,0.9387,0.9222,0.9185,0.9709,0.0341),(0.9668,0.9445,0.9353,0.9180,0.9142,0.9689,0.0382),(0.9640,0.9404,0.9307,0.9124,0.9084,0.9663,0.0440)} {(0.6499,0.0001,0.0006,0.0012,0.0019,0.0030,0.0002),(0.6260,0.0001,0.0007,0.0014,0.0022,0.0034,0.0002),(0.6076,0.0001,0.0007,0.0015,0.0025,0.0038,0.0003),(0.5833,0.0001,0.0009,0.0017,0.0028,0.0043,0.0003)} {(0.0005,0.0190,0.0006,0.0008,0.0157,0.0010,0.0014),(0.0005,0.0203,0.0007,0.0009,0.0167,0.0011,0.0016),(0.0006,0.0214,0.0008,0.0011,0.0174,0.0013,0.0018),(0.0007,0.0228,0.0009,0.0012,0.0183,0.0015,0.0021)} {(0.9714,0.9513,0.9431,0.9275,0.9240,0.9733,0.0293),(0.9688,0.9475,0.9387,0.9222,0.9185,0.9709,0.0341),(0.9668,0.9445,0.9353,0.9180,0.9142,0.9689,0.0382),(0.9640,0.9404,0.9307,0.9124,0.9084,0.9663,0.0440)} {(0.0008,0.0002,0.0199,0.0224,0.0009,0.0010,0.0011),(0.0009,0.0003,0.0212,0.0237,0.0011,0.0012,0.0012),(0.0011,0.0003,0.0222,0.0247,0.0012,0.0013,0.0014),(0.0012,0.0004,0.0234,0.0259,0.0014,0.0015,0.0016)} {(0.9714,0.9513,0.9431,0.9275,0.9240,0.9733,0.0293),(0.9688,0.9475,0.9387,0.9222,0.9185,0.9709,0.0341),(0.9668,0.9445,0.9353,0.9180,0.9142,0.9689,0.0382),(0.9640,0.9404,0.9307,0.9124,0.9084,0.9663,0.0440)} {(0.6499,0.0001,0.0006,0.0012,0.0019,0.0030,0.0002),(0.6260,0.0001,0.0007,0.0014,0.0022,0.0034,0.0002),(0.6076,0.0001,0.0007,0.0015,0.0025,0.0038,0.0003),(0.5833,0.0001,0.0009,0.0017,0.0028,0.0043,0.0003)} {(0.6499,0.0001,0.0006,0.0012,0.0019,0.0030,0.0002),(0.6260,0.0001,0.0007,0.0014,0.0022,0.0034,0.0002),(0.6076,0.0001,0.0007,0.0015,0.0025,0.0038,0.0003),(0.5833,0.0001,0.0009,0.0017,0.0028,0.0043,0.0003)} {(0.0035,0.0004,0.0009,0.0015,0.0017,0.6415,0.0002),(0.0040,0.0004,0.0011,0.0018,0.0020,0.6173,0.0003),(0.0044,0.0005,0.0012,0.0020,0.0022,0.5986,0.0003),(0.0050,0.0006,0.0014,0.0022,0.0025,0.5740,0.0003)} ] + + + TEST alpha(ncats) = 100.00( 4), mode = MEDIAN Rates: 0.87591 0.96474 1.02955 1.12981 @@ -591,7 +1170,216 @@ Subst params: 0.50000 2.00000 3.00000 4.00000 5.00000 1.10000 1.20000 - TEST alpha(ncats) = 0.10( 6) + TEST alpha(ncats) = 0.10( 6), mode = MEAN + +Rates: 0.00000 0.00001 0.00152 0.04420 + 0.56179 5.39248 +[0] P-matrix for branch length 0.100000 ++1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 + ++0.9998 +0.0000 +0.0000 +0.0000 +0.0001 +0.0001 +0.0000 ++0.0000 +0.9999 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.9999 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.9998 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.9998 +0.0000 +0.0000 ++0.0001 +0.0000 +0.0000 +0.0000 +0.0000 +0.9998 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.9998 + ++0.9945 +0.0002 +0.0007 +0.0009 +0.0016 +0.0017 +0.0004 ++0.0002 +0.9973 +0.0004 +0.0004 +0.0006 +0.0005 +0.0007 ++0.0006 +0.0005 +0.9957 +0.0007 +0.0009 +0.0008 +0.0008 ++0.0010 +0.0005 +0.0008 +0.9943 +0.0012 +0.0011 +0.0011 ++0.0013 +0.0005 +0.0008 +0.0009 +0.9942 +0.0012 +0.0011 ++0.0016 +0.0006 +0.0008 +0.0009 +0.0014 +0.9944 +0.0003 ++0.0004 +0.0008 +0.0009 +0.0010 +0.0014 +0.0004 +0.9952 + ++0.9329 +0.0025 +0.0087 +0.0108 +0.0195 +0.0210 +0.0045 ++0.0021 +0.9659 +0.0053 +0.0048 +0.0070 +0.0065 +0.0084 ++0.0080 +0.0057 +0.9467 +0.0080 +0.0114 +0.0103 +0.0099 ++0.0118 +0.0061 +0.0095 +0.9308 +0.0152 +0.0136 +0.0129 ++0.0156 +0.0066 +0.0099 +0.0112 +0.9287 +0.0144 +0.0137 ++0.0194 +0.0070 +0.0103 +0.0115 +0.0166 +0.9310 +0.0042 ++0.0045 +0.0097 +0.0107 +0.0119 +0.0171 +0.0045 +0.9415 + ++0.5391 +0.0289 +0.0660 +0.0740 +0.1223 +0.1272 +0.0425 ++0.0247 +0.7249 +0.0439 +0.0393 +0.0560 +0.0496 +0.0616 ++0.0609 +0.0472 +0.6064 +0.0591 +0.0828 +0.0735 +0.0701 ++0.0807 +0.0500 +0.0698 +0.5225 +0.1021 +0.0901 +0.0847 ++0.0979 +0.0522 +0.0718 +0.0749 +0.5218 +0.0942 +0.0873 ++0.1174 +0.0534 +0.0735 +0.0762 +0.1086 +0.5300 +0.0408 ++0.0425 +0.0719 +0.0759 +0.0777 +0.1091 +0.0442 +0.5787 + + +[0] P-matrix for branch length 0.200000 ++1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 + ++0.9996 +0.0000 +0.0000 +0.0001 +0.0001 +0.0001 +0.0000 ++0.0000 +0.9998 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.9997 +0.0000 +0.0001 +0.0001 +0.0001 ++0.0001 +0.0000 +0.0001 +0.9996 +0.0001 +0.0001 +0.0001 ++0.0001 +0.0000 +0.0001 +0.0001 +0.9996 +0.0001 +0.0001 ++0.0001 +0.0000 +0.0001 +0.0001 +0.0001 +0.9996 +0.0000 ++0.0000 +0.0001 +0.0001 +0.0001 +0.0001 +0.0000 +0.9997 + ++0.9891 +0.0004 +0.0014 +0.0018 +0.0032 +0.0035 +0.0007 ++0.0003 +0.9945 +0.0008 +0.0008 +0.0011 +0.0010 +0.0014 ++0.0013 +0.0009 +0.9914 +0.0013 +0.0018 +0.0017 +0.0016 ++0.0019 +0.0010 +0.0015 +0.9887 +0.0025 +0.0022 +0.0021 ++0.0026 +0.0011 +0.0016 +0.0018 +0.9883 +0.0024 +0.0022 ++0.0032 +0.0011 +0.0017 +0.0019 +0.0027 +0.9887 +0.0006 ++0.0007 +0.0016 +0.0017 +0.0019 +0.0028 +0.0007 +0.9905 + ++0.8713 +0.0052 +0.0169 +0.0208 +0.0370 +0.0397 +0.0091 ++0.0044 +0.9332 +0.0103 +0.0094 +0.0137 +0.0126 +0.0162 ++0.0156 +0.0111 +0.8967 +0.0155 +0.0221 +0.0199 +0.0191 ++0.0227 +0.0120 +0.0184 +0.8671 +0.0292 +0.0260 +0.0247 ++0.0296 +0.0128 +0.0191 +0.0214 +0.8636 +0.0275 +0.0260 ++0.0367 +0.0136 +0.0199 +0.0220 +0.0317 +0.8677 +0.0084 ++0.0091 +0.0189 +0.0207 +0.0226 +0.0325 +0.0091 +0.8871 + ++0.3301 +0.0595 +0.1033 +0.1057 +0.1629 +0.1623 +0.0761 ++0.0510 +0.5402 +0.0751 +0.0662 +0.0926 +0.0802 +0.0947 ++0.0954 +0.0809 +0.3946 +0.0903 +0.1252 +0.1098 +0.1038 ++0.1154 +0.0843 +0.1067 +0.3061 +0.1441 +0.1260 +0.1173 ++0.1303 +0.0864 +0.1085 +0.1057 +0.3206 +0.1300 +0.1186 ++0.1499 +0.0863 +0.1098 +0.1067 +0.1499 +0.3228 +0.0746 ++0.0761 +0.1105 +0.1125 +0.1075 +0.1483 +0.0809 +0.3643 + + +[0] P-matrix for branch length 1.000000 ++1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 + ++0.9981 +0.0001 +0.0002 +0.0003 +0.0006 +0.0006 +0.0001 ++0.0001 +0.9991 +0.0001 +0.0001 +0.0002 +0.0002 +0.0002 ++0.0002 +0.0002 +0.9985 +0.0002 +0.0003 +0.0003 +0.0003 ++0.0003 +0.0002 +0.0003 +0.9980 +0.0004 +0.0004 +0.0004 ++0.0004 +0.0002 +0.0003 +0.0003 +0.9980 +0.0004 +0.0004 ++0.0006 +0.0002 +0.0003 +0.0003 +0.0005 +0.9980 +0.0001 ++0.0001 +0.0003 +0.0003 +0.0003 +0.0005 +0.0001 +0.9984 + ++0.9468 +0.0019 +0.0069 +0.0086 +0.0155 +0.0167 +0.0036 ++0.0017 +0.9731 +0.0042 +0.0038 +0.0056 +0.0051 +0.0066 ++0.0063 +0.0045 +0.9578 +0.0064 +0.0090 +0.0082 +0.0078 ++0.0094 +0.0048 +0.0075 +0.9451 +0.0121 +0.0108 +0.0103 ++0.0124 +0.0052 +0.0078 +0.0089 +0.9434 +0.0115 +0.0109 ++0.0155 +0.0055 +0.0082 +0.0091 +0.0132 +0.9452 +0.0033 ++0.0036 +0.0077 +0.0085 +0.0094 +0.0136 +0.0035 +0.9537 + ++0.5267 +0.0302 +0.0680 +0.0759 +0.1251 +0.1299 +0.0442 ++0.0259 +0.7156 +0.0454 +0.0407 +0.0578 +0.0512 +0.0635 ++0.0628 +0.0489 +0.5947 +0.0608 +0.0852 +0.0755 +0.0721 ++0.0828 +0.0518 +0.0719 +0.5096 +0.1048 +0.0923 +0.0868 ++0.1001 +0.0540 +0.0738 +0.0768 +0.5095 +0.0965 +0.0893 ++0.1199 +0.0551 +0.0755 +0.0781 +0.1113 +0.5176 +0.0425 ++0.0442 +0.0740 +0.0781 +0.0796 +0.1116 +0.0460 +0.5665 + ++0.1356 +0.1500 +0.1449 +0.1230 +0.1678 +0.1460 +0.1327 ++0.1286 +0.1728 +0.1413 +0.1198 +0.1634 +0.1411 +0.1330 ++0.1337 +0.1521 +0.1467 +0.1224 +0.1669 +0.1447 +0.1334 ++0.1342 +0.1524 +0.1447 +0.1230 +0.1673 +0.1450 +0.1335 ++0.1343 +0.1525 +0.1447 +0.1227 +0.1674 +0.1451 +0.1334 ++0.1348 +0.1520 +0.1447 +0.1227 +0.1674 +0.1457 +0.1327 ++0.1327 +0.1552 +0.1445 +0.1223 +0.1667 +0.1437 +0.1348 + + +[0] P-matrix for branch length 1.000000 ++1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 + ++0.9981 +0.0001 +0.0002 +0.0003 +0.0006 +0.0006 +0.0001 ++0.0001 +0.9991 +0.0001 +0.0001 +0.0002 +0.0002 +0.0002 ++0.0002 +0.0002 +0.9985 +0.0002 +0.0003 +0.0003 +0.0003 ++0.0003 +0.0002 +0.0003 +0.9980 +0.0004 +0.0004 +0.0004 ++0.0004 +0.0002 +0.0003 +0.0003 +0.9980 +0.0004 +0.0004 ++0.0006 +0.0002 +0.0003 +0.0003 +0.0005 +0.9980 +0.0001 ++0.0001 +0.0003 +0.0003 +0.0003 +0.0005 +0.0001 +0.9984 + ++0.9468 +0.0019 +0.0069 +0.0086 +0.0155 +0.0167 +0.0036 ++0.0017 +0.9731 +0.0042 +0.0038 +0.0056 +0.0051 +0.0066 ++0.0063 +0.0045 +0.9578 +0.0064 +0.0090 +0.0082 +0.0078 ++0.0094 +0.0048 +0.0075 +0.9451 +0.0121 +0.0108 +0.0103 ++0.0124 +0.0052 +0.0078 +0.0089 +0.9434 +0.0115 +0.0109 ++0.0155 +0.0055 +0.0082 +0.0091 +0.0132 +0.9452 +0.0033 ++0.0036 +0.0077 +0.0085 +0.0094 +0.0136 +0.0035 +0.9537 + ++0.5267 +0.0302 +0.0680 +0.0759 +0.1251 +0.1299 +0.0442 ++0.0259 +0.7156 +0.0454 +0.0407 +0.0578 +0.0512 +0.0635 ++0.0628 +0.0489 +0.5947 +0.0608 +0.0852 +0.0755 +0.0721 ++0.0828 +0.0518 +0.0719 +0.5096 +0.1048 +0.0923 +0.0868 ++0.1001 +0.0540 +0.0738 +0.0768 +0.5095 +0.0965 +0.0893 ++0.1199 +0.0551 +0.0755 +0.0781 +0.1113 +0.5176 +0.0425 ++0.0442 +0.0740 +0.0781 +0.0796 +0.1116 +0.0460 +0.5665 + ++0.1356 +0.1500 +0.1449 +0.1230 +0.1678 +0.1460 +0.1327 ++0.1286 +0.1728 +0.1413 +0.1198 +0.1634 +0.1411 +0.1330 ++0.1337 +0.1521 +0.1467 +0.1224 +0.1669 +0.1447 +0.1334 ++0.1342 +0.1524 +0.1447 +0.1230 +0.1673 +0.1450 +0.1335 ++0.1343 +0.1525 +0.1447 +0.1227 +0.1674 +0.1451 +0.1334 ++0.1348 +0.1520 +0.1447 +0.1227 +0.1674 +0.1457 +0.1327 ++0.1327 +0.1552 +0.1445 +0.1223 +0.1667 +0.1437 +0.1348 + + +[0] CLV 5: [ {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00003,0.00003,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00083,0.00090,0.00000,0.00000,0.00000,0.00000),(0.00009,0.00965,0.00999,0.00022,0.00025,0.00027,0.00039),(0.00615,0.04057,0.03192,0.00900,0.00937,0.00948,0.01243)} {(1.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.99924,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.97826,0.00000,0.00000,0.00000,0.00001,0.00001,0.00000),(0.75918,0.00002,0.00024,0.00051,0.00088,0.00135,0.00008),(0.10895,0.00261,0.00910,0.01331,0.01698,0.02246,0.00579)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00005,0.00000,0.00004,0.00000,0.00000,0.00000,0.00000),(0.00138,0.00000,0.00128,0.00000,0.00000,0.00001,0.00000),(0.01469,0.00005,0.01395,0.00042,0.00057,0.00073,0.00019),(0.03411,0.00383,0.03765,0.01231,0.01414,0.01645,0.00856)} {(0.00000,0.00000,1.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,1.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.99940,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.98284,0.00000,0.00000,0.00000,0.00000),(0.00028,0.00011,0.80416,0.00034,0.00037,0.00039,0.00043),(0.01068,0.00564,0.15574,0.01139,0.01177,0.01205,0.01265)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00006,0.00000,0.00000,0.00007,0.00000,0.00000,0.00000),(0.00175,0.00000,0.00000,0.00191,0.00000,0.00001,0.00000),(0.01812,0.00004,0.00024,0.01967,0.00063,0.00081,0.00021),(0.03490,0.00338,0.00861,0.03532,0.01377,0.01598,0.00818)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00003,0.00003,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00083,0.00090,0.00000,0.00000,0.00000,0.00000),(0.00009,0.00965,0.00999,0.00022,0.00025,0.00027,0.00039),(0.00615,0.04057,0.03192,0.00900,0.00937,0.00948,0.01243)} {(0.00000,0.00000,0.00000,0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.99922,0.00000),(0.00001,0.00000,0.00000,0.00000,0.00001,0.97760,0.00000),(0.00158,0.00016,0.00039,0.00068,0.00076,0.75290,0.00008),(0.02636,0.00643,0.01205,0.01589,0.01689,0.10419,0.00654)} {(0.00000,0.00000,1.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,1.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.99940,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.98284,0.00000,0.00000,0.00000,0.00000),(0.00028,0.00011,0.80416,0.00034,0.00037,0.00039,0.00043),(0.01068,0.00564,0.15574,0.01139,0.01177,0.01205,0.01265)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00003,0.00000,0.00003,0.00000,0.00000,0.00000),(0.00000,0.00076,0.00000,0.00097,0.00000,0.00000,0.00000),(0.00011,0.00880,0.00017,0.01041,0.00027,0.00030,0.00043),(0.00630,0.03578,0.00730,0.02581,0.00913,0.00921,0.01188)} {(1.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.99924,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.97826,0.00000,0.00000,0.00000,0.00001,0.00001,0.00000),(0.75918,0.00002,0.00024,0.00051,0.00088,0.00135,0.00008),(0.10895,0.00261,0.00910,0.01331,0.01698,0.02246,0.00579)} {(1.00000,1.00000,1.00000,1.00000,1.00000,1.00000,0.00000),(1.00000,1.00000,1.00000,1.00000,1.00000,1.00000,0.00000),(0.99995,0.99991,0.99989,0.99985,0.99984,0.99996,0.00000),(0.99858,0.99730,0.99679,0.99577,0.99551,0.99870,0.00009),(0.98184,0.96789,0.96222,0.95126,0.94870,0.98320,0.01275),(0.85363,0.81955,0.80315,0.77919,0.77682,0.85627,0.40411)} {(1.00000,1.00000,1.00000,1.00000,1.00000,1.00000,0.00000),(1.00000,1.00000,1.00000,1.00000,1.00000,1.00000,0.00000),(0.99995,0.99991,0.99989,0.99985,0.99984,0.99996,0.00000),(0.99858,0.99730,0.99679,0.99577,0.99551,0.99870,0.00009),(0.98184,0.96789,0.96222,0.95126,0.94870,0.98320,0.01275),(0.85363,0.81955,0.80315,0.77919,0.77682,0.85627,0.40411)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00001,0.00001,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00038,0.00032,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00451,0.00414,0.00017,0.00027,0.00038,0.00050,0.00017),(0.01966,0.02757,0.00772,0.00972,0.01125,0.01294,0.00841)} {(0.00000,0.00000,0.00000,1.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,1.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00004,0.99927,0.00000,0.00000,0.00000),(0.00001,0.00000,0.00129,0.97910,0.00001,0.00001,0.00001),(0.00078,0.00019,0.01418,0.76783,0.00087,0.00092,0.00098),(0.02211,0.00936,0.04379,0.12640,0.02264,0.02308,0.02365)} {(0.00000,0.00000,0.00000,1.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,1.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00004,0.99927,0.00000,0.00000,0.00000),(0.00001,0.00000,0.00129,0.97910,0.00001,0.00001,0.00001),(0.00078,0.00019,0.01418,0.76783,0.00087,0.00092,0.00098),(0.02211,0.00936,0.04379,0.12640,0.02264,0.02308,0.02365)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00006,0.00000,0.00000,0.00006,0.00000),(0.00000,0.00000,0.00166,0.00000,0.00000,0.00165,0.00000),(0.00067,0.00013,0.01781,0.00048,0.00053,0.01723,0.00019),(0.01678,0.00602,0.04332,0.01345,0.01410,0.03544,0.00909)} {(0.00000,0.00000,0.00000,0.00000,1.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,1.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.99919,0.00000,0.00000),(0.00001,0.00000,0.00000,0.00001,0.97683,0.00001,0.00001),(0.00137,0.00019,0.00049,0.00085,0.74576,0.00101,0.00106),(0.02652,0.00857,0.01567,0.02078,0.10276,0.02248,0.02199)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00005,0.00000,0.00004,0.00000,0.00000,0.00000,0.00000),(0.00138,0.00000,0.00128,0.00000,0.00000,0.00001,0.00000),(0.01469,0.00005,0.01395,0.00042,0.00057,0.00073,0.00019),(0.03411,0.00383,0.03765,0.01231,0.01414,0.01645,0.00856)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00006,0.00000,0.00000,0.00007,0.00000,0.00000,0.00000),(0.00175,0.00000,0.00000,0.00191,0.00000,0.00001,0.00000),(0.01812,0.00004,0.00024,0.01967,0.00063,0.00081,0.00021),(0.03490,0.00338,0.00861,0.03532,0.01377,0.01598,0.00818)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00006,0.00000,0.00000,0.00007,0.00000,0.00000,0.00000),(0.00175,0.00000,0.00000,0.00191,0.00000,0.00001,0.00000),(0.01812,0.00004,0.00024,0.01967,0.00063,0.00081,0.00021),(0.03490,0.00338,0.00861,0.03532,0.01377,0.01598,0.00818)} ] +[0] CLV 6: [ {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00018,0.00004,0.00015,0.00001,0.00001,0.00002,0.00001),(0.00335,0.00169,0.00234,0.00142,0.00164,0.00187,0.00114)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00012,0.00000,0.00000,0.00000,0.00000,0.00006,0.00000),(0.00338,0.00000,0.00000,0.00000,0.00000,0.00157,0.00000),(0.02815,0.00002,0.00013,0.00025,0.00035,0.01389,0.00003),(0.01065,0.00064,0.00181,0.00262,0.00311,0.00923,0.00103)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00005,0.00000,0.00004,0.00000,0.00000,0.00000,0.00000),(0.00137,0.00000,0.00127,0.00001,0.00001,0.00001,0.00000),(0.01373,0.00016,0.01309,0.00070,0.00089,0.00111,0.00005),(0.02410,0.00715,0.02580,0.01382,0.01484,0.01714,0.00811)} {(0.00000,0.00000,1.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.99999,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.99896,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.97016,0.00000,0.00000,0.00000,0.00000),(0.00012,0.00004,0.68271,0.00015,0.00016,0.00017,0.00019),(0.00212,0.00103,0.03898,0.00228,0.00236,0.00242,0.00255)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00006,0.00000,0.00000,0.00007,0.00000,0.00000,0.00000),(0.00174,0.00000,0.00000,0.00189,0.00001,0.00001,0.00000),(0.01699,0.00018,0.00054,0.01809,0.00108,0.00133,0.00006),(0.02417,0.00647,0.01119,0.02258,0.01433,0.01657,0.00767)} {(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00003,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00088,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00010,0.00854,0.00001,0.00001,0.00001,0.00001),(0.00105,0.00248,0.00968,0.00131,0.00136,0.00137,0.00168)} 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{(0.0000,0.0000,1.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,1.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9994,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9857,0.0000,0.0000,0.0000,0.0000),(0.0002,0.0001,0.8460,0.0002,0.0002,0.0002,0.0003),(0.0110,0.0058,0.1497,0.0117,0.0121,0.0123,0.0129)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0009,0.0000,0.0000,0.0009,0.0000,0.0000),(0.0001,0.0101,0.0001,0.0002,0.0089,0.0003,0.0004),(0.0100,0.0501,0.0104,0.0125,0.0276,0.0133,0.0167)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0001,0.0001,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0021,0.0015,0.0000,0.0000),(0.0005,0.0001,0.0002,0.0204,0.0149,0.0004,0.0005),(0.0175,0.0063,0.0116,0.0435,0.0335,0.0163,0.0162)} {(0.0000,0.0000,0.0000,0.0000,0.0000,1.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,1.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.9992,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.9813,0.0000),(0.0010,0.0001,0.0002,0.0004,0.0005,0.8041,0.0000),(0.0266,0.0066,0.0123,0.0162,0.0172,0.0998,0.0068)} {(0.0000,0.0000,1.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,1.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9994,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.9857,0.0000,0.0000,0.0000,0.0000),(0.0002,0.0001,0.8460,0.0002,0.0002,0.0002,0.0003),(0.0110,0.0058,0.1497,0.0117,0.0121,0.0123,0.0129)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0001,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0012,0.0000,0.0011,0.0000,0.0000,0.0000,0.0000),(0.0118,0.0000,0.0111,0.0003,0.0003,0.0004,0.0001),(0.0338,0.0040,0.0374,0.0126,0.0144,0.0167,0.0088)} {(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9992,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9818,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.8093,0.0000,0.0001,0.0003,0.0005,0.0008,0.0000),(0.1044,0.0027,0.0093,0.0136,0.0172,0.0226,0.0060)} {(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(0.9999,0.9999,0.9999,0.9998,0.9998,1.0000,0.0000),(0.9988,0.9977,0.9973,0.9965,0.9963,0.9989,0.0001),(0.9861,0.9750,0.9705,0.9618,0.9597,0.9872,0.0077),(0.8510,0.8174,0.8011,0.7775,0.7753,0.8536,0.4139)} {(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(0.9999,0.9999,0.9999,0.9998,0.9998,1.0000,0.0000),(0.9988,0.9977,0.9973,0.9965,0.9963,0.9989,0.0001),(0.9861,0.9750,0.9705,0.9618,0.9597,0.9872,0.0077),(0.8510,0.8174,0.8011,0.7775,0.7753,0.8536,0.4139)} {(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9992,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9818,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.8093,0.0000,0.0001,0.0003,0.0005,0.0008,0.0000),(0.1044,0.0027,0.0093,0.0136,0.0172,0.0226,0.0060)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0009,0.0000,0.0000,0.0009,0.0000,0.0000),(0.0001,0.0101,0.0001,0.0002,0.0089,0.0003,0.0004),(0.0100,0.0501,0.0104,0.0125,0.0276,0.0133,0.0167)} {(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(0.9999,0.9999,0.9999,0.9998,0.9998,1.0000,0.0000),(0.9988,0.9977,0.9973,0.9965,0.9963,0.9989,0.0001),(0.9861,0.9750,0.9705,0.9618,0.9597,0.9872,0.0077),(0.8510,0.8174,0.8011,0.7775,0.7753,0.8536,0.4139)} {(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0000,0.0001,0.0000,0.0000,0.0000),(0.0000,0.0000,0.0011,0.0013,0.0000,0.0000,0.0000),(0.0002,0.0001,0.0111,0.0128,0.0002,0.0003,0.0003),(0.0112,0.0051,0.0354,0.0323,0.0117,0.0119,0.0123)} {(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(1.0000,1.0000,1.0000,1.0000,1.0000,1.0000,0.0000),(0.9999,0.9999,0.9999,0.9998,0.9998,1.0000,0.0000),(0.9988,0.9977,0.9973,0.9965,0.9963,0.9989,0.0001),(0.9861,0.9750,0.9705,0.9618,0.9597,0.9872,0.0077),(0.8510,0.8174,0.8011,0.7775,0.7753,0.8536,0.4139)} {(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9992,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9818,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.8093,0.0000,0.0001,0.0003,0.0005,0.0008,0.0000),(0.1044,0.0027,0.0093,0.0136,0.0172,0.0226,0.0060)} {(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(1.0000,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9992,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.9818,0.0000,0.0000,0.0000,0.0000,0.0000,0.0000),(0.8093,0.0000,0.0001,0.0003,0.0005,0.0008,0.0000),(0.1044,0.0027,0.0093,0.0136,0.0172,0.0226,0.0060)} {(0.0000,0.0000,0.0000,0.0000,0.0000,1.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,1.0000,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.9992,0.0000),(0.0000,0.0000,0.0000,0.0000,0.0000,0.9813,0.0000),(0.0010,0.0001,0.0002,0.0004,0.0005,0.8041,0.0000),(0.0266,0.0066,0.0123,0.0162,0.0172,0.0998,0.0068)} ] - TEST alpha(ncats) = 1.25( 6) + TEST alpha(ncats) = 1.25( 6), mode = MEAN + +Rates: 0.13643 0.36988 0.63230 0.96404 + 1.44749 2.44987 +[1] P-matrix for branch length 0.100000 ++0.9832 +0.0006 +0.0021 +0.0027 +0.0049 +0.0053 +0.0011 ++0.0005 +0.9916 +0.0013 +0.0012 +0.0017 +0.0016 +0.0021 ++0.0020 +0.0014 +0.9867 +0.0020 +0.0028 +0.0026 +0.0025 ++0.0030 +0.0015 +0.0024 +0.9827 +0.0038 +0.0034 +0.0033 ++0.0039 +0.0016 +0.0025 +0.0028 +0.9821 +0.0036 +0.0034 ++0.0049 +0.0017 +0.0026 +0.0029 +0.0042 +0.9827 +0.0010 ++0.0011 +0.0024 +0.0027 +0.0030 +0.0043 +0.0011 +0.9854 + ++0.9552 +0.0016 +0.0058 +0.0072 +0.0131 +0.0141 +0.0030 ++0.0014 +0.9774 +0.0035 +0.0032 +0.0047 +0.0043 +0.0056 ++0.0053 +0.0037 +0.9645 +0.0053 +0.0076 +0.0069 +0.0066 ++0.0079 +0.0041 +0.0063 +0.9538 +0.0102 +0.0091 +0.0087 ++0.0105 +0.0044 +0.0066 +0.0075 +0.9523 +0.0097 +0.0092 ++0.0130 +0.0046 +0.0069 +0.0077 +0.0111 +0.9539 +0.0027 ++0.0030 +0.0065 +0.0071 +0.0079 +0.0114 +0.0030 +0.9610 + ++0.9249 +0.0028 +0.0097 +0.0121 +0.0218 +0.0235 +0.0051 ++0.0024 +0.9617 +0.0059 +0.0054 +0.0079 +0.0073 +0.0094 ++0.0090 +0.0064 +0.9403 +0.0090 +0.0128 +0.0115 +0.0111 ++0.0132 +0.0069 +0.0106 +0.9225 +0.0170 +0.0152 +0.0145 ++0.0174 +0.0074 +0.0111 +0.0125 +0.9202 +0.0161 +0.0153 ++0.0217 +0.0078 +0.0115 +0.0129 +0.0186 +0.9227 +0.0047 ++0.0051 +0.0109 +0.0120 +0.0133 +0.0191 +0.0051 +0.9345 + ++0.8883 +0.0044 +0.0146 +0.0181 +0.0322 +0.0347 +0.0078 ++0.0038 +0.9424 +0.0089 +0.0081 +0.0119 +0.0109 +0.0140 ++0.0135 +0.0096 +0.9106 +0.0135 +0.0191 +0.0172 +0.0165 ++0.0197 +0.0104 +0.0159 +0.8847 +0.0253 +0.0226 +0.0215 ++0.0258 +0.0111 +0.0166 +0.0186 +0.8815 +0.0239 +0.0226 ++0.0320 +0.0117 +0.0172 +0.0191 +0.0276 +0.8851 +0.0072 ++0.0078 +0.0163 +0.0179 +0.0197 +0.0283 +0.0078 +0.9022 + ++0.8381 +0.0068 +0.0214 +0.0262 +0.0463 +0.0496 +0.0118 ++0.0058 +0.9150 +0.0132 +0.0120 +0.0175 +0.0160 +0.0205 ++0.0197 +0.0142 +0.8694 +0.0197 +0.0279 +0.0251 +0.0241 ++0.0285 +0.0153 +0.0232 +0.8327 +0.0366 +0.0326 +0.0310 ++0.0370 +0.0163 +0.0242 +0.0269 +0.8286 +0.0345 +0.0325 ++0.0458 +0.0172 +0.0251 +0.0276 +0.0398 +0.8336 +0.0109 ++0.0118 +0.0239 +0.0261 +0.0284 +0.0407 +0.0118 +0.8574 + ++0.7448 +0.0121 +0.0345 +0.0412 +0.0715 +0.0761 +0.0199 ++0.0103 +0.8613 +0.0217 +0.0197 +0.0284 +0.0258 +0.0328 ++0.0318 +0.0234 +0.7909 +0.0315 +0.0445 +0.0398 +0.0382 ++0.0449 +0.0251 +0.0372 +0.7361 +0.0574 +0.0510 +0.0483 ++0.0572 +0.0265 +0.0385 +0.0421 +0.7314 +0.0538 +0.0505 ++0.0702 +0.0277 +0.0398 +0.0432 +0.0620 +0.7383 +0.0187 ++0.0199 +0.0382 +0.0414 +0.0443 +0.0631 +0.0202 +0.7730 + + +[1] P-matrix for branch length 0.200000 ++0.9667 +0.0012 +0.0043 +0.0054 +0.0097 +0.0105 +0.0022 ++0.0010 +0.9833 +0.0026 +0.0024 +0.0035 +0.0032 +0.0041 ++0.0039 +0.0028 +0.9737 +0.0040 +0.0056 +0.0051 +0.0049 ++0.0059 +0.0030 +0.0047 +0.9657 +0.0076 +0.0068 +0.0064 ++0.0078 +0.0032 +0.0049 +0.0056 +0.9646 +0.0072 +0.0068 ++0.0097 +0.0034 +0.0051 +0.0057 +0.0083 +0.9657 +0.0020 ++0.0022 +0.0048 +0.0053 +0.0059 +0.0085 +0.0022 +0.9711 + ++0.9128 +0.0033 +0.0113 +0.0141 +0.0252 +0.0272 +0.0060 ++0.0029 +0.9554 +0.0069 +0.0063 +0.0092 +0.0085 +0.0109 ++0.0104 +0.0074 +0.9305 +0.0105 +0.0149 +0.0134 +0.0129 ++0.0154 +0.0080 +0.0124 +0.9101 +0.0198 +0.0177 +0.0168 ++0.0202 +0.0086 +0.0129 +0.0145 +0.9074 +0.0187 +0.0177 ++0.0251 +0.0091 +0.0134 +0.0149 +0.0216 +0.9103 +0.0055 ++0.0060 +0.0127 +0.0140 +0.0154 +0.0221 +0.0060 +0.9239 + ++0.8566 +0.0059 +0.0188 +0.0232 +0.0411 +0.0441 +0.0103 ++0.0050 +0.9253 +0.0116 +0.0106 +0.0154 +0.0141 +0.0181 ++0.0174 +0.0125 +0.8847 +0.0174 +0.0246 +0.0222 +0.0213 ++0.0253 +0.0135 +0.0205 +0.8519 +0.0325 +0.0289 +0.0275 ++0.0329 +0.0144 +0.0213 +0.0238 +0.8481 +0.0306 +0.0289 ++0.0407 +0.0152 +0.0222 +0.0245 +0.0353 +0.8527 +0.0095 ++0.0103 +0.0211 +0.0230 +0.0252 +0.0361 +0.0103 +0.8740 + ++0.7916 +0.0093 +0.0278 +0.0337 +0.0590 +0.0630 +0.0157 ++0.0080 +0.8888 +0.0173 +0.0158 +0.0228 +0.0208 +0.0265 ++0.0257 +0.0187 +0.8306 +0.0255 +0.0361 +0.0324 +0.0311 ++0.0367 +0.0201 +0.0301 +0.7846 +0.0470 +0.0418 +0.0396 ++0.0472 +0.0213 +0.0313 +0.0345 +0.7800 +0.0442 +0.0415 ++0.0581 +0.0224 +0.0324 +0.0354 +0.0510 +0.7861 +0.0146 ++0.0157 +0.0310 +0.0337 +0.0363 +0.0519 +0.0158 +0.8156 + ++0.7077 +0.0145 +0.0399 +0.0472 +0.0812 +0.0861 +0.0235 ++0.0124 +0.8387 +0.0253 +0.0229 +0.0330 +0.0298 +0.0378 ++0.0368 +0.0273 +0.7588 +0.0363 +0.0512 +0.0458 +0.0439 ++0.0514 +0.0292 +0.0429 +0.6976 +0.0656 +0.0582 +0.0551 ++0.0650 +0.0308 +0.0444 +0.0481 +0.6930 +0.0613 +0.0574 ++0.0795 +0.0321 +0.0458 +0.0493 +0.0707 +0.7005 +0.0221 ++0.0235 +0.0441 +0.0475 +0.0505 +0.0718 +0.0240 +0.7388 + ++0.5677 +0.0260 +0.0613 +0.0695 +0.1158 +0.1209 +0.0389 ++0.0223 +0.7457 +0.0404 +0.0363 +0.0518 +0.0461 +0.0575 ++0.0566 +0.0435 +0.6331 +0.0551 +0.0773 +0.0687 +0.0656 ++0.0758 +0.0462 +0.0651 +0.5521 +0.0961 +0.0848 +0.0798 ++0.0926 +0.0483 +0.0670 +0.0704 +0.5504 +0.0888 +0.0824 ++0.1116 +0.0496 +0.0687 +0.0718 +0.1024 +0.5587 +0.0373 ++0.0389 +0.0670 +0.0711 +0.0732 +0.1030 +0.0404 +0.6064 + + +[1] P-matrix for branch length 1.000000 ++0.8465 +0.0064 +0.0202 +0.0248 +0.0439 +0.0471 +0.0111 ++0.0055 +0.9197 +0.0125 +0.0114 +0.0165 +0.0151 +0.0194 ++0.0187 +0.0134 +0.8763 +0.0186 +0.0264 +0.0237 +0.0228 ++0.0271 +0.0145 +0.0220 +0.8414 +0.0347 +0.0309 +0.0294 ++0.0351 +0.0154 +0.0229 +0.0255 +0.8374 +0.0327 +0.0309 ++0.0435 +0.0163 +0.0237 +0.0262 +0.0378 +0.8422 +0.0103 ++0.0111 +0.0226 +0.0247 +0.0269 +0.0386 +0.0111 +0.8649 + ++0.6465 +0.0190 +0.0490 +0.0570 +0.0967 +0.1020 +0.0298 ++0.0163 +0.7997 +0.0316 +0.0285 +0.0409 +0.0367 +0.0462 ++0.0452 +0.0340 +0.7049 +0.0444 +0.0625 +0.0557 +0.0533 ++0.0621 +0.0363 +0.0524 +0.6341 +0.0790 +0.0700 +0.0661 ++0.0774 +0.0382 +0.0541 +0.0580 +0.6302 +0.0735 +0.0686 ++0.0941 +0.0395 +0.0557 +0.0592 +0.0848 +0.6384 +0.0283 ++0.0298 +0.0539 +0.0577 +0.0606 +0.0857 +0.0306 +0.6816 + ++0.4905 +0.0343 +0.0741 +0.0816 +0.1330 +0.1373 +0.0491 ++0.0294 +0.6875 +0.0501 +0.0447 +0.0634 +0.0559 +0.0689 ++0.0684 +0.0539 +0.5599 +0.0660 +0.0923 +0.0817 +0.0778 ++0.0890 +0.0569 +0.0780 +0.4720 +0.1123 +0.0989 +0.0928 ++0.1064 +0.0592 +0.0800 +0.0824 +0.4737 +0.1031 +0.0952 ++0.1268 +0.0602 +0.0817 +0.0837 +0.1190 +0.4813 +0.0474 ++0.0491 +0.0804 +0.0843 +0.0851 +0.1190 +0.0514 +0.5307 + ++0.3620 +0.0533 +0.0971 +0.1011 +0.1578 +0.1587 +0.0699 ++0.0457 +0.5735 +0.0694 +0.0614 +0.0860 +0.0748 +0.0893 ++0.0897 +0.0747 +0.4293 +0.0853 +0.1184 +0.1040 +0.0986 ++0.1103 +0.0781 +0.1008 +0.3390 +0.1381 +0.1210 +0.1128 ++0.1262 +0.0803 +0.1026 +0.1013 +0.3501 +0.1250 +0.1144 ++0.1465 +0.0805 +0.1040 +0.1023 +0.1443 +0.3540 +0.0684 ++0.0699 +0.1042 +0.1068 +0.1034 +0.1430 +0.0741 +0.3987 + ++0.2559 +0.0780 +0.1187 +0.1158 +0.1721 +0.1669 +0.0927 ++0.0668 +0.4499 +0.0909 +0.0795 +0.1102 +0.0947 +0.1080 ++0.1095 +0.0979 +0.3092 +0.1025 +0.1414 +0.1234 +0.1160 ++0.1263 +0.1011 +0.1212 +0.2309 +0.1570 +0.1369 +0.1266 ++0.1377 +0.1028 +0.1225 +0.1152 +0.2546 +0.1400 +0.1271 ++0.1541 +0.1020 +0.1234 +0.1158 +0.1616 +0.2515 +0.0916 ++0.0927 +0.1260 +0.1257 +0.1161 +0.1589 +0.0992 +0.2814 + ++0.1706 +0.1142 +0.1382 +0.1242 +0.1746 +0.1599 +0.1183 ++0.0979 +0.2983 +0.1182 +0.1016 +0.1394 +0.1193 +0.1253 ++0.1276 +0.1272 +0.1979 +0.1174 +0.1607 +0.1395 +0.1295 ++0.1355 +0.1294 +0.1388 +0.1491 +0.1678 +0.1457 +0.1337 ++0.1397 +0.1301 +0.1393 +0.1231 +0.1874 +0.1471 +0.1333 ++0.1476 +0.1284 +0.1395 +0.1233 +0.1697 +0.1735 +0.1179 ++0.1183 +0.1461 +0.1403 +0.1226 +0.1667 +0.1278 +0.1783 + + +[1] P-matrix for branch length 1.000000 ++0.8465 +0.0064 +0.0202 +0.0248 +0.0439 +0.0471 +0.0111 ++0.0055 +0.9197 +0.0125 +0.0114 +0.0165 +0.0151 +0.0194 ++0.0187 +0.0134 +0.8763 +0.0186 +0.0264 +0.0237 +0.0228 ++0.0271 +0.0145 +0.0220 +0.8414 +0.0347 +0.0309 +0.0294 ++0.0351 +0.0154 +0.0229 +0.0255 +0.8374 +0.0327 +0.0309 ++0.0435 +0.0163 +0.0237 +0.0262 +0.0378 +0.8422 +0.0103 ++0.0111 +0.0226 +0.0247 +0.0269 +0.0386 +0.0111 +0.8649 + ++0.6465 +0.0190 +0.0490 +0.0570 +0.0967 +0.1020 +0.0298 ++0.0163 +0.7997 +0.0316 +0.0285 +0.0409 +0.0367 +0.0462 ++0.0452 +0.0340 +0.7049 +0.0444 +0.0625 +0.0557 +0.0533 ++0.0621 +0.0363 +0.0524 +0.6341 +0.0790 +0.0700 +0.0661 ++0.0774 +0.0382 +0.0541 +0.0580 +0.6302 +0.0735 +0.0686 ++0.0941 +0.0395 +0.0557 +0.0592 +0.0848 +0.6384 +0.0283 ++0.0298 +0.0539 +0.0577 +0.0606 +0.0857 +0.0306 +0.6816 + ++0.4905 +0.0343 +0.0741 +0.0816 +0.1330 +0.1373 +0.0491 ++0.0294 +0.6875 +0.0501 +0.0447 +0.0634 +0.0559 +0.0689 ++0.0684 +0.0539 +0.5599 +0.0660 +0.0923 +0.0817 +0.0778 ++0.0890 +0.0569 +0.0780 +0.4720 +0.1123 +0.0989 +0.0928 ++0.1064 +0.0592 +0.0800 +0.0824 +0.4737 +0.1031 +0.0952 ++0.1268 +0.0602 +0.0817 +0.0837 +0.1190 +0.4813 +0.0474 ++0.0491 +0.0804 +0.0843 +0.0851 +0.1190 +0.0514 +0.5307 + ++0.3620 +0.0533 +0.0971 +0.1011 +0.1578 +0.1587 +0.0699 ++0.0457 +0.5735 +0.0694 +0.0614 +0.0860 +0.0748 +0.0893 ++0.0897 +0.0747 +0.4293 +0.0853 +0.1184 +0.1040 +0.0986 ++0.1103 +0.0781 +0.1008 +0.3390 +0.1381 +0.1210 +0.1128 ++0.1262 +0.0803 +0.1026 +0.1013 +0.3501 +0.1250 +0.1144 ++0.1465 +0.0805 +0.1040 +0.1023 +0.1443 +0.3540 +0.0684 ++0.0699 +0.1042 +0.1068 +0.1034 +0.1430 +0.0741 +0.3987 + ++0.2559 +0.0780 +0.1187 +0.1158 +0.1721 +0.1669 +0.0927 ++0.0668 +0.4499 +0.0909 +0.0795 +0.1102 +0.0947 +0.1080 ++0.1095 +0.0979 +0.3092 +0.1025 +0.1414 +0.1234 +0.1160 ++0.1263 +0.1011 +0.1212 +0.2309 +0.1570 +0.1369 +0.1266 ++0.1377 +0.1028 +0.1225 +0.1152 +0.2546 +0.1400 +0.1271 ++0.1541 +0.1020 +0.1234 +0.1158 +0.1616 +0.2515 +0.0916 ++0.0927 +0.1260 +0.1257 +0.1161 +0.1589 +0.0992 +0.2814 + ++0.1706 +0.1142 +0.1382 +0.1242 +0.1746 +0.1599 +0.1183 ++0.0979 +0.2983 +0.1182 +0.1016 +0.1394 +0.1193 +0.1253 ++0.1276 +0.1272 +0.1979 +0.1174 +0.1607 +0.1395 +0.1295 ++0.1355 +0.1294 +0.1388 +0.1491 +0.1678 +0.1457 +0.1337 ++0.1397 +0.1301 +0.1393 +0.1231 +0.1874 +0.1471 +0.1333 ++0.1476 +0.1284 +0.1395 +0.1233 +0.1697 +0.1735 +0.1179 ++0.1183 +0.1461 +0.1403 +0.1226 +0.1667 +0.1278 +0.1783 + + +[1] CLV 5: [ {(0.00001,0.00253,0.00270,0.00001,0.00002,0.00002,0.00003),(0.00004,0.00658,0.00690,0.00010,0.00011,0.00012,0.00018),(0.00011,0.01073,0.01105,0.00028,0.00031,0.00034,0.00049),(0.00026,0.01541,0.01551,0.00060,0.00067,0.00073,0.00104),(0.00058,0.02124,0.02069,0.00125,0.00137,0.00147,0.00209),(0.00159,0.03015,0.02757,0.00301,0.00324,0.00341,0.00476)} {(0.93455,0.00000,0.00002,0.00003,0.00006,0.00009,0.00000),(0.83329,0.00001,0.00011,0.00024,0.00041,0.00063,0.00004),(0.73383,0.00003,0.00030,0.00064,0.00108,0.00166,0.00011),(0.62666,0.00006,0.00066,0.00135,0.00223,0.00338,0.00025),(0.50082,0.00015,0.00135,0.00265,0.00422,0.00632,0.00055),(0.32224,0.00050,0.00321,0.00575,0.00858,0.01245,0.00151)} {(0.00413,0.00000,0.00384,0.00003,0.00004,0.00005,0.00001),(0.01032,0.00002,0.00971,0.00019,0.00026,0.00034,0.00008),(0.01614,0.00006,0.01539,0.00052,0.00070,0.00090,0.00024),(0.02202,0.00014,0.02133,0.00111,0.00148,0.00188,0.00053),(0.02821,0.00031,0.02792,0.00221,0.00288,0.00364,0.00111),(0.03482,0.00090,0.03585,0.00494,0.00621,0.00766,0.00277)} {(0.00002,0.00001,0.94806,0.00002,0.00002,0.00003,0.00003),(0.00013,0.00005,0.86588,0.00015,0.00017,0.00018,0.00019),(0.00036,0.00013,0.78271,0.00042,0.00046,0.00049,0.00053),(0.00077,0.00030,0.68992,0.00091,0.00098,0.00105,0.00113),(0.00159,0.00064,0.57581,0.00184,0.00197,0.00210,0.00226),(0.00376,0.00163,0.40087,0.00424,0.00449,0.00472,0.00505)} {(0.00520,0.00000,0.00002,0.00567,0.00004,0.00006,0.00001),(0.01286,0.00002,0.00011,0.01398,0.00029,0.00037,0.00009),(0.01984,0.00005,0.00030,0.02153,0.00078,0.00100,0.00026),(0.02664,0.00013,0.00065,0.02880,0.00163,0.00206,0.00057),(0.03337,0.00028,0.00134,0.03589,0.00313,0.00392,0.00118),(0.03945,0.00081,0.00312,0.04186,0.00652,0.00801,0.00285)} {(0.00001,0.00253,0.00270,0.00001,0.00002,0.00002,0.00003),(0.00004,0.00658,0.00690,0.00010,0.00011,0.00012,0.00018),(0.00011,0.01073,0.01105,0.00028,0.00031,0.00034,0.00049),(0.00026,0.01541,0.01551,0.00060,0.00067,0.00073,0.00104),(0.00058,0.02124,0.02069,0.00125,0.00137,0.00147,0.00209),(0.00159,0.03015,0.02757,0.00301,0.00324,0.00341,0.00476)} {(0.00011,0.00001,0.00003,0.00005,0.00005,0.93263,0.00000),(0.00074,0.00007,0.00018,0.00031,0.00035,0.82871,0.00004),(0.00195,0.00020,0.00049,0.00084,0.00094,0.72702,0.00011),(0.00397,0.00043,0.00105,0.00175,0.00195,0.61797,0.00025),(0.00742,0.00089,0.00210,0.00339,0.00376,0.49072,0.00057),(0.01461,0.00212,0.00472,0.00719,0.00788,0.31215,0.00163)} {(0.00002,0.00001,0.94806,0.00002,0.00002,0.00003,0.00003),(0.00013,0.00005,0.86588,0.00015,0.00017,0.00018,0.00019),(0.00036,0.00013,0.78271,0.00042,0.00046,0.00049,0.00053),(0.00077,0.00030,0.68992,0.00091,0.00098,0.00105,0.00113),(0.00159,0.00064,0.57581,0.00184,0.00197,0.00210,0.00226),(0.00376,0.00163,0.40087,0.00424,0.00449,0.00472,0.00505)} {(0.00001,0.00232,0.00001,0.00290,0.00002,0.00002,0.00003),(0.00005,0.00601,0.00008,0.00729,0.00012,0.00014,0.00020),(0.00014,0.00978,0.00022,0.01146,0.00034,0.00037,0.00053),(0.00031,0.01401,0.00048,0.01574,0.00074,0.00079,0.00113),(0.00068,0.01922,0.00099,0.02035,0.00148,0.00158,0.00223),(0.00181,0.02708,0.00240,0.02552,0.00341,0.00356,0.00491)} {(0.93455,0.00000,0.00002,0.00003,0.00006,0.00009,0.00000),(0.83329,0.00001,0.00011,0.00024,0.00041,0.00063,0.00004),(0.73383,0.00003,0.00030,0.00064,0.00108,0.00166,0.00011),(0.62666,0.00006,0.00066,0.00135,0.00223,0.00338,0.00025),(0.50082,0.00015,0.00135,0.00265,0.00422,0.00632,0.00055),(0.32224,0.00050,0.00321,0.00575,0.00858,0.01245,0.00151)} {(0.99560,0.99176,0.99022,0.98717,0.98642,0.99598,0.00084),(0.98805,0.97833,0.97441,0.96673,0.96490,0.98901,0.00580),(0.97956,0.96418,0.95791,0.94585,0.94307,0.98106,0.01587),(0.96890,0.94761,0.93883,0.92230,0.91864,0.97095,0.03401),(0.95364,0.92585,0.91421,0.89290,0.88848,0.95627,0.06825),(0.92368,0.88839,0.87309,0.84668,0.84195,0.92688,0.15493)} {(0.99560,0.99176,0.99022,0.98717,0.98642,0.99598,0.00084),(0.98805,0.97833,0.97441,0.96673,0.96490,0.98901,0.00580),(0.97956,0.96418,0.95791,0.94585,0.94307,0.98106,0.01587),(0.96890,0.94761,0.93883,0.92230,0.91864,0.97095,0.03401),(0.95364,0.92585,0.91421,0.89290,0.88848,0.95627,0.06825),(0.92368,0.88839,0.87309,0.84668,0.84195,0.92688,0.15493)} {(0.00115,0.00100,0.00001,0.00002,0.00003,0.00003,0.00001),(0.00304,0.00273,0.00008,0.00012,0.00017,0.00023,0.00008),(0.00503,0.00466,0.00022,0.00034,0.00047,0.00062,0.00022),(0.00734,0.00707,0.00048,0.00074,0.00101,0.00130,0.00049),(0.01027,0.01043,0.00100,0.00150,0.00200,0.00255,0.00103),(0.01475,0.01661,0.00246,0.00350,0.00448,0.00553,0.00261)} {(0.00005,0.00001,0.00387,0.93706,0.00006,0.00006,0.00007),(0.00036,0.00008,0.00984,0.83946,0.00040,0.00042,0.00045),(0.00097,0.00023,0.01566,0.74328,0.00107,0.00114,0.00121),(0.00207,0.00052,0.02182,0.63928,0.00227,0.00240,0.00254),(0.00410,0.00111,0.02884,0.51653,0.00445,0.00468,0.00495),(0.00909,0.00279,0.03792,0.34081,0.00968,0.01008,0.01056)} {(0.00005,0.00001,0.00387,0.93706,0.00006,0.00006,0.00007),(0.00036,0.00008,0.00984,0.83946,0.00040,0.00042,0.00045),(0.00097,0.00023,0.01566,0.74328,0.00107,0.00114,0.00121),(0.00207,0.00052,0.02182,0.63928,0.00227,0.00240,0.00254),(0.00410,0.00111,0.02884,0.51653,0.00445,0.00468,0.00495),(0.00909,0.00279,0.03792,0.34081,0.00968,0.01008,0.01056)} {(0.00004,0.00001,0.00496,0.00003,0.00004,0.00492,0.00001),(0.00031,0.00006,0.01247,0.00022,0.00024,0.01220,0.00008),(0.00083,0.00016,0.01960,0.00059,0.00065,0.01889,0.00024),(0.00175,0.00036,0.02690,0.00126,0.00138,0.02545,0.00053),(0.00343,0.00075,0.03473,0.00250,0.00272,0.03207,0.00114),(0.00741,0.00186,0.04349,0.00552,0.00595,0.03837,0.00287)} {(0.00009,0.00001,0.00003,0.00006,0.93037,0.00007,0.00007),(0.00064,0.00008,0.00022,0.00039,0.82341,0.00047,0.00049),(0.00169,0.00024,0.00061,0.00105,0.71934,0.00125,0.00130),(0.00348,0.00052,0.00130,0.00221,0.60846,0.00260,0.00270),(0.00660,0.00109,0.00262,0.00431,0.48022,0.00500,0.00515),(0.01340,0.00268,0.00598,0.00923,0.30295,0.01049,0.01061)} {(0.00413,0.00000,0.00384,0.00003,0.00004,0.00005,0.00001),(0.01032,0.00002,0.00971,0.00019,0.00026,0.00034,0.00008),(0.01614,0.00006,0.01539,0.00052,0.00070,0.00090,0.00024),(0.02202,0.00014,0.02133,0.00111,0.00148,0.00188,0.00053),(0.02821,0.00031,0.02792,0.00221,0.00288,0.00364,0.00111),(0.03482,0.00090,0.03585,0.00494,0.00621,0.00766,0.00277)} {(0.00520,0.00000,0.00002,0.00567,0.00004,0.00006,0.00001),(0.01286,0.00002,0.00011,0.01398,0.00029,0.00037,0.00009),(0.01984,0.00005,0.00030,0.02153,0.00078,0.00100,0.00026),(0.02664,0.00013,0.00065,0.02880,0.00163,0.00206,0.00057),(0.03337,0.00028,0.00134,0.03589,0.00313,0.00392,0.00118),(0.03945,0.00081,0.00312,0.04186,0.00652,0.00801,0.00285)} {(0.00520,0.00000,0.00002,0.00567,0.00004,0.00006,0.00001),(0.01286,0.00002,0.00011,0.01398,0.00029,0.00037,0.00009),(0.01984,0.00005,0.00030,0.02153,0.00078,0.00100,0.00026),(0.02664,0.00013,0.00065,0.02880,0.00163,0.00206,0.00057),(0.03337,0.00028,0.00134,0.03589,0.00313,0.00392,0.00118),(0.03945,0.00081,0.00312,0.04186,0.00652,0.00801,0.00285)} ] +[1] CLV 6: [ {(0.00001,0.00000,0.00001,0.00000,0.00000,0.00000,0.00000),(0.00008,0.00002,0.00007,0.00000,0.00000,0.00000,0.00000),(0.00022,0.00005,0.00018,0.00001,0.00002,0.00002,0.00001),(0.00047,0.00012,0.00037,0.00004,0.00005,0.00007,0.00002),(0.00090,0.00025,0.00068,0.00010,0.00014,0.00018,0.00007),(0.00182,0.00060,0.00131,0.00035,0.00045,0.00056,0.00025)} {(0.00966,0.00000,0.00001,0.00002,0.00003,0.00453,0.00000),(0.02165,0.00001,0.00006,0.00012,0.00017,0.01044,0.00002),(0.02994,0.00003,0.00015,0.00030,0.00042,0.01490,0.00004),(0.03508,0.00005,0.00030,0.00057,0.00081,0.01819,0.00008),(0.03620,0.00010,0.00052,0.00098,0.00137,0.01995,0.00016),(0.02924,0.00021,0.00096,0.00170,0.00229,0.01831,0.00035)} {(0.00406,0.00001,0.00377,0.00005,0.00006,0.00008,0.00000),(0.00987,0.00007,0.00931,0.00032,0.00042,0.00052,0.00001),(0.01497,0.00020,0.01433,0.00086,0.00109,0.00137,0.00006),(0.01970,0.00045,0.01919,0.00177,0.00221,0.00276,0.00020),(0.02405,0.00094,0.02398,0.00336,0.00409,0.00510,0.00059),(0.02736,0.00233,0.02833,0.00684,0.00798,0.00982,0.00201)} {(0.00001,0.00000,0.91087,0.00001,0.00001,0.00001,0.00001),(0.00006,0.00002,0.77714,0.00007,0.00008,0.00008,0.00009),(0.00015,0.00006,0.65112,0.00018,0.00019,0.00021,0.00023),(0.00030,0.00011,0.52189,0.00036,0.00039,0.00042,0.00045),(0.00055,0.00021,0.38004,0.00065,0.00070,0.00075,0.00081),(0.00108,0.00043,0.20128,0.00124,0.00132,0.00139,0.00151)} {(0.00512,0.00001,0.00004,0.00555,0.00008,0.00010,0.00000),(0.01232,0.00008,0.00025,0.01322,0.00051,0.00063,0.00002),(0.01847,0.00023,0.00067,0.01960,0.00132,0.00163,0.00008),(0.02394,0.00050,0.00138,0.02508,0.00262,0.00324,0.00025),(0.02860,0.00101,0.00262,0.02943,0.00471,0.00583,0.00069),(0.03110,0.00234,0.00540,0.03095,0.00872,0.01068,0.00219)} {(0.00000,0.00001,0.00260,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00004,0.00622,0.00000,0.00000,0.00000,0.00000),(0.00000,0.00012,0.00927,0.00001,0.00001,0.00001,0.00002),(0.00002,0.00025,0.01190,0.00003,0.00003,0.00004,0.00005),(0.00005,0.00050,0.01400,0.00009,0.00010,0.00010,0.00014),(0.00020,0.00109,0.01463,0.00030,0.00033,0.00034,0.00046)} {(0.00005,0.00000,0.00001,0.00002,0.00002,0.88508,0.00000),(0.00034,0.00003,0.00008,0.00014,0.00016,0.71963,0.00001),(0.00083,0.00008,0.00020,0.00034,0.00039,0.57207,0.00004),(0.00158,0.00015,0.00038,0.00065,0.00074,0.43017,0.00008),(0.00266,0.00026,0.00066,0.00112,0.00126,0.28702,0.00016),(0.00432,0.00049,0.00119,0.00192,0.00213,0.12994,0.00036)} 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{(0.99224,0.98561,0.98295,0.97769,0.97641,0.99289,0.00044),(0.97867,0.96227,0.95562,0.94278,0.93978,0.98028,0.00331),(0.96320,0.93789,0.92751,0.90796,0.90362,0.96566,0.00976),(0.94364,0.90970,0.89559,0.86979,0.86444,0.94687,0.02255),(0.91572,0.87343,0.85548,0.82400,0.81808,0.91964,0.04923),(0.86252,0.81363,0.79196,0.75690,0.75164,0.86676,0.12498)} {(0.00000,0.00000,0.00001,0.00000,0.00000,0.00000,0.00000),(0.00003,0.00002,0.00010,0.00000,0.00000,0.00000,0.00000),(0.00009,0.00005,0.00026,0.00001,0.00001,0.00002,0.00001),(0.00019,0.00012,0.00055,0.00003,0.00004,0.00005,0.00002),(0.00036,0.00025,0.00106,0.00008,0.00011,0.00013,0.00007),(0.00075,0.00060,0.00218,0.00029,0.00035,0.00042,0.00026)} 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{(0.00000,0.00000,0.00478,0.00000,0.00000,0.00002,0.00000),(0.00001,0.00000,0.01128,0.00000,0.00001,0.00016,0.00000),(0.00003,0.00000,0.01652,0.00002,0.00002,0.00039,0.00001),(0.00008,0.00002,0.02077,0.00007,0.00007,0.00075,0.00004),(0.00022,0.00005,0.02370,0.00018,0.00020,0.00128,0.00012),(0.00065,0.00016,0.02327,0.00055,0.00060,0.00215,0.00040)} {(0.00005,0.00001,0.00002,0.00003,0.88132,0.00003,0.00003),(0.00029,0.00004,0.00010,0.00017,0.71158,0.00021,0.00022),(0.00071,0.00009,0.00024,0.00043,0.56148,0.00052,0.00054),(0.00135,0.00018,0.00047,0.00083,0.41859,0.00098,0.00103),(0.00229,0.00032,0.00083,0.00143,0.27630,0.00169,0.00174),(0.00385,0.00062,0.00153,0.00251,0.12336,0.00291,0.00294)} {(0.00393,0.00000,0.00001,0.00000,0.00000,0.00000,0.00000),(0.00906,0.00000,0.00010,0.00001,0.00001,0.00001,0.00000),(0.01296,0.00000,0.00025,0.00002,0.00004,0.00006,0.00001),(0.01584,0.00000,0.00051,0.00007,0.00011,0.00016,0.00002),(0.01743,0.00001,0.00092,0.00018,0.00028,0.00041,0.00005),(0.01616,0.00006,0.00172,0.00056,0.00081,0.00114,0.00020)} {(0.00002,0.00000,0.00004,0.00003,0.00000,0.00000,0.00000),(0.00014,0.00000,0.00024,0.00017,0.00001,0.00001,0.00000),(0.00035,0.00000,0.00060,0.00041,0.00003,0.00004,0.00002),(0.00068,0.00001,0.00118,0.00079,0.00009,0.00011,0.00005),(0.00117,0.00003,0.00208,0.00134,0.00022,0.00027,0.00013),(0.00198,0.00010,0.00366,0.00219,0.00064,0.00076,0.00040)} {(0.00002,0.00000,0.00004,0.00003,0.00000,0.00000,0.00000),(0.00014,0.00000,0.00024,0.00017,0.00001,0.00001,0.00000),(0.00035,0.00000,0.00060,0.00041,0.00003,0.00004,0.00002),(0.00068,0.00001,0.00118,0.00079,0.00009,0.00011,0.00005),(0.00117,0.00003,0.00208,0.00134,0.00022,0.00027,0.00013),(0.00198,0.00010,0.00366,0.00219,0.00064,0.00076,0.00040)} ] +[1] CLV 7: [ {(0.0000,0.0000,0.9481,0.0000,0.0000,0.0000,0.0000),(0.0001,0.0000,0.8659,0.0002,0.0002,0.0002,0.0002),(0.0004,0.0001,0.7827,0.0004,0.0005,0.0005,0.0005),(0.0008,0.0003,0.6899,0.0009,0.0010,0.0010,0.0011),(0.0016,0.0006,0.5758,0.0018,0.0020,0.0021,0.0023),(0.0038,0.0016,0.4009,0.0042,0.0045,0.0047,0.0051)} {(0.0001,0.0000,0.0000,0.0000,0.0001,0.9326,0.0000),(0.0007,0.0001,0.0002,0.0003,0.0004,0.8287,0.0000),(0.0019,0.0002,0.0005,0.0008,0.0009,0.7270,0.0001),(0.0040,0.0004,0.0010,0.0017,0.0020,0.6180,0.0003),(0.0074,0.0009,0.0021,0.0034,0.0038,0.4907,0.0006),(0.0146,0.0021,0.0047,0.0072,0.0079,0.3122,0.0016)} {(0.0052,0.0000,0.0000,0.0057,0.0000,0.0001,0.0000),(0.0129,0.0000,0.0001,0.0140,0.0003,0.0004,0.0001),(0.0198,0.0001,0.0003,0.0215,0.0008,0.0010,0.0003),(0.0266,0.0001,0.0007,0.0288,0.0016,0.0021,0.0006),(0.0334,0.0003,0.0013,0.0359,0.0031,0.0039,0.0012),(0.0394,0.0008,0.0031,0.0419,0.0065,0.0080,0.0028)} {(0.0000,0.0000,0.9481,0.0000,0.0000,0.0000,0.0000),(0.0001,0.0000,0.8659,0.0002,0.0002,0.0002,0.0002),(0.0004,0.0001,0.7827,0.0004,0.0005,0.0005,0.0005),(0.0008,0.0003,0.6899,0.0009,0.0010,0.0010,0.0011),(0.0016,0.0006,0.5758,0.0018,0.0020,0.0021,0.0023),(0.0038,0.0016,0.4009,0.0042,0.0045,0.0047,0.0051)} {(0.0000,0.0034,0.0000,0.0000,0.0031,0.0000,0.0000),(0.0001,0.0088,0.0001,0.0002,0.0078,0.0002,0.0003),(0.0002,0.0142,0.0003,0.0004,0.0122,0.0005,0.0008),(0.0005,0.0203,0.0007,0.0009,0.0166,0.0011,0.0016),(0.0012,0.0277,0.0014,0.0019,0.0214,0.0023,0.0032),(0.0030,0.0386,0.0034,0.0044,0.0266,0.0051,0.0069)} {(0.0001,0.0000,0.0000,0.0073,0.0054,0.0000,0.0001),(0.0004,0.0001,0.0002,0.0180,0.0132,0.0003,0.0003),(0.0010,0.0002,0.0004,0.0276,0.0202,0.0009,0.0009),(0.0020,0.0004,0.0009,0.0369,0.0269,0.0018,0.0019),(0.0038,0.0008,0.0019,0.0458,0.0334,0.0035,0.0036),(0.0080,0.0019,0.0043,0.0530,0.0388,0.0074,0.0075)} {(0.0001,0.0000,0.0000,0.0000,0.0001,0.9326,0.0000),(0.0007,0.0001,0.0002,0.0003,0.0004,0.8287,0.0000),(0.0019,0.0002,0.0005,0.0008,0.0009,0.7270,0.0001),(0.0040,0.0004,0.0010,0.0017,0.0020,0.6180,0.0003),(0.0074,0.0009,0.0021,0.0034,0.0038,0.4907,0.0006),(0.0146,0.0021,0.0047,0.0072,0.0079,0.3122,0.0016)} {(0.0000,0.0000,0.9481,0.0000,0.0000,0.0000,0.0000),(0.0001,0.0000,0.8659,0.0002,0.0002,0.0002,0.0002),(0.0004,0.0001,0.7827,0.0004,0.0005,0.0005,0.0005),(0.0008,0.0003,0.6899,0.0009,0.0010,0.0010,0.0011),(0.0016,0.0006,0.5758,0.0018,0.0020,0.0021,0.0023),(0.0038,0.0016,0.4009,0.0042,0.0045,0.0047,0.0051)} {(0.0041,0.0000,0.0038,0.0000,0.0000,0.0000,0.0000),(0.0103,0.0000,0.0097,0.0002,0.0003,0.0003,0.0001),(0.0161,0.0001,0.0154,0.0005,0.0007,0.0009,0.0002),(0.0220,0.0001,0.0213,0.0011,0.0015,0.0019,0.0005),(0.0282,0.0003,0.0279,0.0022,0.0029,0.0036,0.0011),(0.0348,0.0009,0.0358,0.0049,0.0062,0.0077,0.0028)} {(0.9345,0.0000,0.0000,0.0000,0.0001,0.0001,0.0000),(0.8333,0.0000,0.0001,0.0002,0.0004,0.0006,0.0000),(0.7338,0.0000,0.0003,0.0006,0.0011,0.0017,0.0001),(0.6267,0.0001,0.0007,0.0013,0.0022,0.0034,0.0002),(0.5008,0.0002,0.0014,0.0026,0.0042,0.0063,0.0006),(0.3222,0.0005,0.0032,0.0057,0.0086,0.0124,0.0015)} {(0.9956,0.9918,0.9902,0.9872,0.9864,0.9960,0.0008),(0.9880,0.9783,0.9744,0.9667,0.9649,0.9890,0.0058),(0.9796,0.9642,0.9579,0.9459,0.9431,0.9811,0.0159),(0.9689,0.9476,0.9388,0.9223,0.9186,0.9710,0.0340),(0.9536,0.9258,0.9142,0.8929,0.8885,0.9563,0.0682),(0.9237,0.8884,0.8731,0.8467,0.8420,0.9269,0.1549)} {(0.9956,0.9918,0.9902,0.9872,0.9864,0.9960,0.0008),(0.9880,0.9783,0.9744,0.9667,0.9649,0.9890,0.0058),(0.9796,0.9642,0.9579,0.9459,0.9431,0.9811,0.0159),(0.9689,0.9476,0.9388,0.9223,0.9186,0.9710,0.0340),(0.9536,0.9258,0.9142,0.8929,0.8885,0.9563,0.0682),(0.9237,0.8884,0.8731,0.8467,0.8420,0.9269,0.1549)} {(0.9345,0.0000,0.0000,0.0000,0.0001,0.0001,0.0000),(0.8333,0.0000,0.0001,0.0002,0.0004,0.0006,0.0000),(0.7338,0.0000,0.0003,0.0006,0.0011,0.0017,0.0001),(0.6267,0.0001,0.0007,0.0013,0.0022,0.0034,0.0002),(0.5008,0.0002,0.0014,0.0026,0.0042,0.0063,0.0006),(0.3222,0.0005,0.0032,0.0057,0.0086,0.0124,0.0015)} {(0.0000,0.0034,0.0000,0.0000,0.0031,0.0000,0.0000),(0.0001,0.0088,0.0001,0.0002,0.0078,0.0002,0.0003),(0.0002,0.0142,0.0003,0.0004,0.0122,0.0005,0.0008),(0.0005,0.0203,0.0007,0.0009,0.0166,0.0011,0.0016),(0.0012,0.0277,0.0014,0.0019,0.0214,0.0023,0.0032),(0.0030,0.0386,0.0034,0.0044,0.0266,0.0051,0.0069)} 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{(0.9345,0.0000,0.0000,0.0000,0.0001,0.0001,0.0000),(0.8333,0.0000,0.0001,0.0002,0.0004,0.0006,0.0000),(0.7338,0.0000,0.0003,0.0006,0.0011,0.0017,0.0001),(0.6267,0.0001,0.0007,0.0013,0.0022,0.0034,0.0002),(0.5008,0.0002,0.0014,0.0026,0.0042,0.0063,0.0006),(0.3222,0.0005,0.0032,0.0057,0.0086,0.0124,0.0015)} {(0.9345,0.0000,0.0000,0.0000,0.0001,0.0001,0.0000),(0.8333,0.0000,0.0001,0.0002,0.0004,0.0006,0.0000),(0.7338,0.0000,0.0003,0.0006,0.0011,0.0017,0.0001),(0.6267,0.0001,0.0007,0.0013,0.0022,0.0034,0.0002),(0.5008,0.0002,0.0014,0.0026,0.0042,0.0063,0.0006),(0.3222,0.0005,0.0032,0.0057,0.0086,0.0124,0.0015)} {(0.0001,0.0000,0.0000,0.0000,0.0001,0.9326,0.0000),(0.0007,0.0001,0.0002,0.0003,0.0004,0.8287,0.0000),(0.0019,0.0002,0.0005,0.0008,0.0009,0.7270,0.0001),(0.0040,0.0004,0.0010,0.0017,0.0020,0.6180,0.0003),(0.0074,0.0009,0.0021,0.0034,0.0038,0.4907,0.0006),(0.0146,0.0021,0.0047,0.0072,0.0079,0.3122,0.0016)} ] + + + TEST alpha(ncats) = 1.25( 6), mode = MEDIAN Rates: 0.12797 0.35383 0.60548 0.92469 1.39616 2.59187 @@ -1009,7 +2006,216 @@ Rates: 0.12797 0.35383 0.60548 0.92469 [1] CLV 7: [ {(0.0000,0.0000,0.9512,0.0000,0.0000,0.0000,0.0000),(0.0001,0.0000,0.8713,0.0001,0.0002,0.0002,0.0002),(0.0003,0.0001,0.7908,0.0004,0.0004,0.0005,0.0005),(0.0007,0.0003,0.7003,0.0008,0.0009,0.0010,0.0011),(0.0015,0.0006,0.5869,0.0017,0.0019,0.0020,0.0021),(0.0041,0.0018,0.3814,0.0046,0.0049,0.0051,0.0055)} {(0.0001,0.0000,0.0000,0.0000,0.0000,0.9367,0.0000),(0.0007,0.0001,0.0002,0.0003,0.0003,0.8354,0.0000),(0.0018,0.0002,0.0005,0.0008,0.0009,0.7367,0.0001),(0.0037,0.0004,0.0010,0.0016,0.0018,0.6299,0.0002),(0.0070,0.0008,0.0020,0.0032,0.0036,0.5027,0.0005),(0.0155,0.0023,0.0051,0.0077,0.0085,0.2937,0.0018)} {(0.0049,0.0000,0.0000,0.0053,0.0000,0.0000,0.0000),(0.0124,0.0000,0.0001,0.0135,0.0003,0.0003,0.0001),(0.0192,0.0000,0.0003,0.0208,0.0007,0.0009,0.0002),(0.0259,0.0001,0.0006,0.0281,0.0015,0.0019,0.0005),(0.0328,0.0003,0.0013,0.0353,0.0030,0.0037,0.0011),(0.0397,0.0009,0.0034,0.0421,0.0070,0.0086,0.0031)} {(0.0000,0.0000,0.9512,0.0000,0.0000,0.0000,0.0000),(0.0001,0.0000,0.8713,0.0001,0.0002,0.0002,0.0002),(0.0003,0.0001,0.7908,0.0004,0.0004,0.0005,0.0005),(0.0007,0.0003,0.7003,0.0008,0.0009,0.0010,0.0011),(0.0015,0.0006,0.5869,0.0017,0.0019,0.0020,0.0021),(0.0041,0.0018,0.3814,0.0046,0.0049,0.0051,0.0055)} {(0.0000,0.0032,0.0000,0.0000,0.0029,0.0000,0.0000),(0.0001,0.0084,0.0001,0.0001,0.0075,0.0002,0.0003),(0.0002,0.0137,0.0003,0.0004,0.0118,0.0005,0.0007),(0.0005,0.0196,0.0006,0.0009,0.0162,0.0011,0.0015),(0.0011,0.0270,0.0013,0.0018,0.0209,0.0021,0.0030),(0.0033,0.0398,0.0037,0.0048,0.0270,0.0055,0.0074)} {(0.0000,0.0000,0.0000,0.0069,0.0050,0.0000,0.0000),(0.0003,0.0001,0.0001,0.0173,0.0127,0.0003,0.0003),(0.0009,0.0001,0.0004,0.0268,0.0195,0.0008,0.0008),(0.0018,0.0003,0.0009,0.0359,0.0262,0.0017,0.0018),(0.0036,0.0007,0.0017,0.0451,0.0328,0.0033,0.0034),(0.0086,0.0021,0.0046,0.0533,0.0390,0.0079,0.0081)} {(0.0001,0.0000,0.0000,0.0000,0.0000,0.9367,0.0000),(0.0007,0.0001,0.0002,0.0003,0.0003,0.8354,0.0000),(0.0018,0.0002,0.0005,0.0008,0.0009,0.7367,0.0001),(0.0037,0.0004,0.0010,0.0016,0.0018,0.6299,0.0002),(0.0070,0.0008,0.0020,0.0032,0.0036,0.5027,0.0005),(0.0155,0.0023,0.0051,0.0077,0.0085,0.2937,0.0018)} {(0.0000,0.0000,0.9512,0.0000,0.0000,0.0000,0.0000),(0.0001,0.0000,0.8713,0.0001,0.0002,0.0002,0.0002),(0.0003,0.0001,0.7908,0.0004,0.0004,0.0005,0.0005),(0.0007,0.0003,0.7003,0.0008,0.0009,0.0010,0.0011),(0.0015,0.0006,0.5869,0.0017,0.0019,0.0020,0.0021),(0.0041,0.0018,0.3814,0.0046,0.0049,0.0051,0.0055)} {(0.0039,0.0000,0.0036,0.0000,0.0000,0.0000,0.0000),(0.0099,0.0000,0.0093,0.0002,0.0002,0.0003,0.0001),(0.0156,0.0001,0.0149,0.0005,0.0006,0.0008,0.0002),(0.0214,0.0001,0.0207,0.0010,0.0014,0.0018,0.0005),(0.0277,0.0003,0.0273,0.0021,0.0027,0.0034,0.0010),(0.0353,0.0010,0.0365,0.0053,0.0067,0.0082,0.0030)} {(0.9385,0.0000,0.0000,0.0000,0.0001,0.0001,0.0000),(0.8398,0.0000,0.0001,0.0002,0.0004,0.0006,0.0000),(0.7434,0.0000,0.0003,0.0006,0.0010,0.0015,0.0001),(0.6384,0.0001,0.0006,0.0013,0.0021,0.0032,0.0002),(0.5127,0.0001,0.0013,0.0025,0.0040,0.0060,0.0005),(0.3036,0.0006,0.0035,0.0062,0.0092,0.0132,0.0017)} {(0.9959,0.9923,0.9908,0.9879,0.9872,0.9962,0.0007),(0.9886,0.9792,0.9755,0.9681,0.9663,0.9895,0.0053),(0.9804,0.9656,0.9595,0.9479,0.9452,0.9819,0.0146),(0.9702,0.9495,0.9410,0.9249,0.9214,0.9722,0.0316),(0.9552,0.9280,0.9167,0.8958,0.8914,0.9578,0.0643),(0.9197,0.8838,0.8682,0.8414,0.8367,0.9229,0.1679)} {(0.9959,0.9923,0.9908,0.9879,0.9872,0.9962,0.0007),(0.9886,0.9792,0.9755,0.9681,0.9663,0.9895,0.0053),(0.9804,0.9656,0.9595,0.9479,0.9452,0.9819,0.0146),(0.9702,0.9495,0.9410,0.9249,0.9214,0.9722,0.0316),(0.9552,0.9280,0.9167,0.8958,0.8914,0.9578,0.0643),(0.9197,0.8838,0.8682,0.8414,0.8367,0.9229,0.1679)} {(0.9385,0.0000,0.0000,0.0000,0.0001,0.0001,0.0000),(0.8398,0.0000,0.0001,0.0002,0.0004,0.0006,0.0000),(0.7434,0.0000,0.0003,0.0006,0.0010,0.0015,0.0001),(0.6384,0.0001,0.0006,0.0013,0.0021,0.0032,0.0002),(0.5127,0.0001,0.0013,0.0025,0.0040,0.0060,0.0005),(0.3036,0.0006,0.0035,0.0062,0.0092,0.0132,0.0017)} {(0.0000,0.0032,0.0000,0.0000,0.0029,0.0000,0.0000),(0.0001,0.0084,0.0001,0.0001,0.0075,0.0002,0.0003),(0.0002,0.0137,0.0003,0.0004,0.0118,0.0005,0.0007),(0.0005,0.0196,0.0006,0.0009,0.0162,0.0011,0.0015),(0.0011,0.0270,0.0013,0.0018,0.0209,0.0021,0.0030),(0.0033,0.0398,0.0037,0.0048,0.0270,0.0055,0.0074)} {(0.9959,0.9923,0.9908,0.9879,0.9872,0.9962,0.0007),(0.9886,0.9792,0.9755,0.9681,0.9663,0.9895,0.0053),(0.9804,0.9656,0.9595,0.9479,0.9452,0.9819,0.0146),(0.9702,0.9495,0.9410,0.9249,0.9214,0.9722,0.0316),(0.9552,0.9280,0.9167,0.8958,0.8914,0.9578,0.0643),(0.9197,0.8838,0.8682,0.8414,0.8367,0.9229,0.1679)} {(0.0000,0.0000,0.0036,0.0043,0.0000,0.0000,0.0000),(0.0001,0.0000,0.0094,0.0108,0.0002,0.0002,0.0002),(0.0004,0.0001,0.0148,0.0169,0.0005,0.0005,0.0005),(0.0009,0.0003,0.0206,0.0230,0.0010,0.0011,0.0011),(0.0018,0.0005,0.0270,0.0294,0.0020,0.0021,0.0023),(0.0046,0.0016,0.0355,0.0363,0.0051,0.0053,0.0056)} {(0.9959,0.9923,0.9908,0.9879,0.9872,0.9962,0.0007),(0.9886,0.9792,0.9755,0.9681,0.9663,0.9895,0.0053),(0.9804,0.9656,0.9595,0.9479,0.9452,0.9819,0.0146),(0.9702,0.9495,0.9410,0.9249,0.9214,0.9722,0.0316),(0.9552,0.9280,0.9167,0.8958,0.8914,0.9578,0.0643),(0.9197,0.8838,0.8682,0.8414,0.8367,0.9229,0.1679)} {(0.9385,0.0000,0.0000,0.0000,0.0001,0.0001,0.0000),(0.8398,0.0000,0.0001,0.0002,0.0004,0.0006,0.0000),(0.7434,0.0000,0.0003,0.0006,0.0010,0.0015,0.0001),(0.6384,0.0001,0.0006,0.0013,0.0021,0.0032,0.0002),(0.5127,0.0001,0.0013,0.0025,0.0040,0.0060,0.0005),(0.3036,0.0006,0.0035,0.0062,0.0092,0.0132,0.0017)} {(0.9385,0.0000,0.0000,0.0000,0.0001,0.0001,0.0000),(0.8398,0.0000,0.0001,0.0002,0.0004,0.0006,0.0000),(0.7434,0.0000,0.0003,0.0006,0.0010,0.0015,0.0001),(0.6384,0.0001,0.0006,0.0013,0.0021,0.0032,0.0002),(0.5127,0.0001,0.0013,0.0025,0.0040,0.0060,0.0005),(0.3036,0.0006,0.0035,0.0062,0.0092,0.0132,0.0017)} {(0.0001,0.0000,0.0000,0.0000,0.0000,0.9367,0.0000),(0.0007,0.0001,0.0002,0.0003,0.0003,0.8354,0.0000),(0.0018,0.0002,0.0005,0.0008,0.0009,0.7367,0.0001),(0.0037,0.0004,0.0010,0.0016,0.0018,0.6299,0.0002),(0.0070,0.0008,0.0020,0.0032,0.0036,0.5027,0.0005),(0.0155,0.0023,0.0051,0.0077,0.0085,0.2937,0.0018)} ] - TEST alpha(ncats) = 100.00( 6) + TEST alpha(ncats) = 100.00( 6), mode = MEAN + +Rates: 0.86550 0.93147 0.97645 1.01848 + 1.06621 1.14189 +[2] P-matrix for branch length 0.100000 ++0.8990 +0.0039 +0.0132 +0.0163 +0.0292 +0.0314 +0.0070 ++0.0034 +0.9481 +0.0080 +0.0073 +0.0107 +0.0098 +0.0127 ++0.0121 +0.0086 +0.9193 +0.0122 +0.0173 +0.0156 +0.0149 ++0.0178 +0.0093 +0.0144 +0.8957 +0.0229 +0.0204 +0.0194 ++0.0233 +0.0100 +0.0150 +0.0168 +0.8928 +0.0217 +0.0205 ++0.0290 +0.0106 +0.0156 +0.0173 +0.0250 +0.8961 +0.0065 ++0.0070 +0.0148 +0.0162 +0.0178 +0.0256 +0.0070 +0.9116 + ++0.8918 +0.0042 +0.0141 +0.0175 +0.0312 +0.0336 +0.0076 ++0.0036 +0.9443 +0.0086 +0.0079 +0.0115 +0.0106 +0.0136 ++0.0130 +0.0093 +0.9135 +0.0130 +0.0185 +0.0167 +0.0160 ++0.0191 +0.0100 +0.0154 +0.8883 +0.0245 +0.0219 +0.0208 ++0.0250 +0.0107 +0.0160 +0.0180 +0.8852 +0.0232 +0.0219 ++0.0310 +0.0114 +0.0167 +0.0185 +0.0267 +0.8887 +0.0070 ++0.0076 +0.0158 +0.0173 +0.0191 +0.0274 +0.0075 +0.9053 + ++0.8870 +0.0045 +0.0148 +0.0183 +0.0326 +0.0351 +0.0079 ++0.0038 +0.9417 +0.0090 +0.0082 +0.0120 +0.0110 +0.0142 ++0.0136 +0.0097 +0.9095 +0.0136 +0.0194 +0.0174 +0.0167 ++0.0199 +0.0105 +0.0161 +0.8833 +0.0256 +0.0229 +0.0217 ++0.0261 +0.0112 +0.0168 +0.0188 +0.8801 +0.0242 +0.0229 ++0.0324 +0.0119 +0.0174 +0.0193 +0.0279 +0.8837 +0.0073 ++0.0079 +0.0165 +0.0181 +0.0199 +0.0286 +0.0079 +0.9010 + ++0.8824 +0.0047 +0.0154 +0.0190 +0.0339 +0.0364 +0.0083 ++0.0040 +0.9393 +0.0094 +0.0086 +0.0125 +0.0115 +0.0148 ++0.0142 +0.0101 +0.9058 +0.0142 +0.0201 +0.0181 +0.0174 ++0.0207 +0.0109 +0.0168 +0.8786 +0.0266 +0.0238 +0.0226 ++0.0271 +0.0117 +0.0174 +0.0195 +0.8753 +0.0252 +0.0238 ++0.0336 +0.0124 +0.0181 +0.0201 +0.0290 +0.8791 +0.0076 ++0.0083 +0.0172 +0.0189 +0.0207 +0.0297 +0.0083 +0.8970 + ++0.8774 +0.0049 +0.0160 +0.0198 +0.0353 +0.0379 +0.0087 ++0.0042 +0.9365 +0.0098 +0.0090 +0.0131 +0.0120 +0.0154 ++0.0148 +0.0106 +0.9017 +0.0148 +0.0210 +0.0189 +0.0182 ++0.0216 +0.0114 +0.0175 +0.8734 +0.0278 +0.0248 +0.0235 ++0.0282 +0.0122 +0.0182 +0.0204 +0.8700 +0.0262 +0.0248 ++0.0350 +0.0129 +0.0189 +0.0210 +0.0303 +0.8739 +0.0080 ++0.0087 +0.0180 +0.0197 +0.0216 +0.0310 +0.0087 +0.8925 + ++0.8694 +0.0053 +0.0171 +0.0211 +0.0375 +0.0403 +0.0093 ++0.0045 +0.9322 +0.0105 +0.0096 +0.0140 +0.0128 +0.0164 ++0.0158 +0.0113 +0.8952 +0.0158 +0.0224 +0.0202 +0.0194 ++0.0230 +0.0122 +0.0187 +0.8651 +0.0296 +0.0264 +0.0250 ++0.0300 +0.0130 +0.0194 +0.0217 +0.8616 +0.0279 +0.0264 ++0.0372 +0.0138 +0.0202 +0.0223 +0.0322 +0.8657 +0.0086 ++0.0093 +0.0192 +0.0210 +0.0230 +0.0330 +0.0093 +0.8854 + + +[2] P-matrix for branch length 0.200000 ++0.8103 +0.0082 +0.0252 +0.0306 +0.0539 +0.0577 +0.0141 ++0.0071 +0.8994 +0.0157 +0.0142 +0.0207 +0.0188 +0.0241 ++0.0233 +0.0169 +0.8463 +0.0231 +0.0328 +0.0294 +0.0282 ++0.0334 +0.0181 +0.0273 +0.8039 +0.0429 +0.0381 +0.0362 ++0.0431 +0.0193 +0.0284 +0.0314 +0.7995 +0.0403 +0.0379 ++0.0532 +0.0203 +0.0294 +0.0323 +0.0465 +0.8052 +0.0131 ++0.0141 +0.0281 +0.0306 +0.0331 +0.0474 +0.0142 +0.8324 + ++0.7977 +0.0089 +0.0270 +0.0327 +0.0573 +0.0613 +0.0151 ++0.0077 +0.8923 +0.0168 +0.0153 +0.0221 +0.0202 +0.0257 ++0.0249 +0.0181 +0.8357 +0.0247 +0.0350 +0.0314 +0.0301 ++0.0356 +0.0194 +0.0292 +0.7909 +0.0457 +0.0406 +0.0385 ++0.0458 +0.0207 +0.0303 +0.0335 +0.7864 +0.0429 +0.0404 ++0.0565 +0.0217 +0.0314 +0.0344 +0.0495 +0.7923 +0.0141 ++0.0151 +0.0300 +0.0327 +0.0353 +0.0505 +0.0153 +0.8211 + ++0.7893 +0.0094 +0.0281 +0.0340 +0.0596 +0.0636 +0.0159 ++0.0081 +0.8874 +0.0176 +0.0160 +0.0231 +0.0210 +0.0269 ++0.0260 +0.0189 +0.8287 +0.0258 +0.0365 +0.0327 +0.0314 ++0.0371 +0.0203 +0.0305 +0.7822 +0.0475 +0.0423 +0.0401 ++0.0477 +0.0216 +0.0316 +0.0349 +0.7776 +0.0446 +0.0420 ++0.0588 +0.0227 +0.0327 +0.0358 +0.0515 +0.7838 +0.0148 ++0.0159 +0.0313 +0.0340 +0.0367 +0.0525 +0.0161 +0.8135 + ++0.7816 +0.0099 +0.0292 +0.0353 +0.0617 +0.0658 +0.0166 ++0.0084 +0.8829 +0.0183 +0.0166 +0.0240 +0.0218 +0.0279 ++0.0270 +0.0197 +0.8221 +0.0268 +0.0379 +0.0340 +0.0326 ++0.0385 +0.0211 +0.0316 +0.7742 +0.0493 +0.0438 +0.0415 ++0.0494 +0.0224 +0.0328 +0.0361 +0.7695 +0.0462 +0.0435 ++0.0608 +0.0235 +0.0340 +0.0371 +0.0534 +0.7758 +0.0155 ++0.0166 +0.0325 +0.0353 +0.0380 +0.0543 +0.0168 +0.8065 + ++0.7729 +0.0104 +0.0305 +0.0367 +0.0640 +0.0683 +0.0173 ++0.0089 +0.8779 +0.0191 +0.0173 +0.0251 +0.0228 +0.0290 ++0.0281 +0.0205 +0.8148 +0.0279 +0.0394 +0.0354 +0.0339 ++0.0400 +0.0220 +0.0329 +0.7652 +0.0512 +0.0455 +0.0431 ++0.0512 +0.0234 +0.0342 +0.0375 +0.7605 +0.0480 +0.0451 ++0.0630 +0.0245 +0.0354 +0.0385 +0.0554 +0.7669 +0.0162 ++0.0173 +0.0339 +0.0367 +0.0395 +0.0564 +0.0176 +0.7986 + ++0.7593 +0.0112 +0.0324 +0.0389 +0.0676 +0.0721 +0.0186 ++0.0096 +0.8699 +0.0203 +0.0184 +0.0267 +0.0242 +0.0308 ++0.0299 +0.0219 +0.8033 +0.0296 +0.0419 +0.0375 +0.0360 ++0.0424 +0.0235 +0.0350 +0.7512 +0.0542 +0.0482 +0.0456 ++0.0541 +0.0249 +0.0363 +0.0398 +0.7464 +0.0508 +0.0477 ++0.0665 +0.0261 +0.0375 +0.0408 +0.0586 +0.7531 +0.0174 ++0.0186 +0.0360 +0.0390 +0.0418 +0.0596 +0.0188 +0.7862 + + +[2] P-matrix for branch length 1.000000 ++0.3940 +0.0478 +0.0911 +0.0964 +0.1522 +0.1543 +0.0642 ++0.0410 +0.6045 +0.0641 +0.0568 +0.0799 +0.0697 +0.0840 ++0.0841 +0.0690 +0.4631 +0.0803 +0.1117 +0.0984 +0.0934 ++0.1051 +0.0723 +0.0949 +0.3720 +0.1319 +0.1157 +0.1080 ++0.1218 +0.0746 +0.0968 +0.0967 +0.3803 +0.1199 +0.1099 ++0.1424 +0.0751 +0.0984 +0.0979 +0.1383 +0.3854 +0.0626 ++0.0642 +0.0980 +0.1011 +0.0990 +0.1374 +0.0678 +0.4324 + ++0.3721 +0.0515 +0.0952 +0.0996 +0.1561 +0.1574 +0.0681 ++0.0442 +0.5835 +0.0677 +0.0599 +0.0840 +0.0731 +0.0876 ++0.0879 +0.0729 +0.4401 +0.0837 +0.1163 +0.1022 +0.0969 ++0.1087 +0.0762 +0.0989 +0.3494 +0.1362 +0.1193 +0.1113 ++0.1249 +0.0784 +0.1008 +0.0999 +0.3596 +0.1234 +0.1130 ++0.1453 +0.0788 +0.1022 +0.1010 +0.1424 +0.3639 +0.0665 ++0.0681 +0.1022 +0.1050 +0.1020 +0.1413 +0.0720 +0.4093 + ++0.3583 +0.0540 +0.0979 +0.1017 +0.1584 +0.1592 +0.0706 ++0.0463 +0.5698 +0.0700 +0.0619 +0.0867 +0.0754 +0.0899 ++0.0903 +0.0754 +0.4254 +0.0858 +0.1192 +0.1047 +0.0992 ++0.1109 +0.0788 +0.1014 +0.3352 +0.1388 +0.1216 +0.1133 ++0.1267 +0.0810 +0.1033 +0.1018 +0.3467 +0.1256 +0.1149 ++0.1469 +0.0812 +0.1047 +0.1029 +0.1449 +0.3503 +0.0691 ++0.0706 +0.1049 +0.1075 +0.1039 +0.1436 +0.0748 +0.3947 + ++0.3462 +0.0563 +0.1002 +0.1034 +0.1604 +0.1606 +0.0729 ++0.0483 +0.5573 +0.0722 +0.0637 +0.0892 +0.0774 +0.0920 ++0.0925 +0.0777 +0.4123 +0.0877 +0.1218 +0.1069 +0.1012 ++0.1128 +0.0811 +0.1037 +0.3227 +0.1411 +0.1235 +0.1150 ++0.1283 +0.0832 +0.1055 +0.1035 +0.3354 +0.1275 +0.1165 ++0.1482 +0.0833 +0.1069 +0.1045 +0.1471 +0.3385 +0.0714 ++0.0729 +0.1073 +0.1096 +0.1055 +0.1457 +0.0774 +0.3817 + ++0.3333 +0.0589 +0.1027 +0.1053 +0.1624 +0.1620 +0.0754 ++0.0505 +0.5436 +0.0745 +0.0657 +0.0919 +0.0796 +0.0942 ++0.0948 +0.0802 +0.3982 +0.0898 +0.1245 +0.1092 +0.1033 ++0.1149 +0.0837 +0.1061 +0.3094 +0.1436 +0.1255 +0.1168 ++0.1299 +0.0858 +0.1079 +0.1053 +0.3235 +0.1295 +0.1182 ++0.1496 +0.0857 +0.1092 +0.1062 +0.1494 +0.3259 +0.0740 ++0.0754 +0.1099 +0.1119 +0.1071 +0.1478 +0.0802 +0.3678 + ++0.3145 +0.0629 +0.1065 +0.1079 +0.1651 +0.1638 +0.0793 ++0.0539 +0.5229 +0.0781 +0.0688 +0.0959 +0.0830 +0.0974 ++0.0983 +0.0841 +0.3773 +0.0928 +0.1285 +0.1126 +0.1064 ++0.1178 +0.0875 +0.1097 +0.2902 +0.1470 +0.1285 +0.1194 ++0.1321 +0.0895 +0.1114 +0.1078 +0.3063 +0.1322 +0.1206 ++0.1512 +0.0893 +0.1126 +0.1087 +0.1526 +0.3076 +0.0779 ++0.0793 +0.1136 +0.1152 +0.1094 +0.1507 +0.0844 +0.3473 + + +[2] P-matrix for branch length 1.000000 ++0.3940 +0.0478 +0.0911 +0.0964 +0.1522 +0.1543 +0.0642 ++0.0410 +0.6045 +0.0641 +0.0568 +0.0799 +0.0697 +0.0840 ++0.0841 +0.0690 +0.4631 +0.0803 +0.1117 +0.0984 +0.0934 ++0.1051 +0.0723 +0.0949 +0.3720 +0.1319 +0.1157 +0.1080 ++0.1218 +0.0746 +0.0968 +0.0967 +0.3803 +0.1199 +0.1099 ++0.1424 +0.0751 +0.0984 +0.0979 +0.1383 +0.3854 +0.0626 ++0.0642 +0.0980 +0.1011 +0.0990 +0.1374 +0.0678 +0.4324 + ++0.3721 +0.0515 +0.0952 +0.0996 +0.1561 +0.1574 +0.0681 ++0.0442 +0.5835 +0.0677 +0.0599 +0.0840 +0.0731 +0.0876 ++0.0879 +0.0729 +0.4401 +0.0837 +0.1163 +0.1022 +0.0969 ++0.1087 +0.0762 +0.0989 +0.3494 +0.1362 +0.1193 +0.1113 ++0.1249 +0.0784 +0.1008 +0.0999 +0.3596 +0.1234 +0.1130 ++0.1453 +0.0788 +0.1022 +0.1010 +0.1424 +0.3639 +0.0665 ++0.0681 +0.1022 +0.1050 +0.1020 +0.1413 +0.0720 +0.4093 + ++0.3583 +0.0540 +0.0979 +0.1017 +0.1584 +0.1592 +0.0706 ++0.0463 +0.5698 +0.0700 +0.0619 +0.0867 +0.0754 +0.0899 ++0.0903 +0.0754 +0.4254 +0.0858 +0.1192 +0.1047 +0.0992 ++0.1109 +0.0788 +0.1014 +0.3352 +0.1388 +0.1216 +0.1133 ++0.1267 +0.0810 +0.1033 +0.1018 +0.3467 +0.1256 +0.1149 ++0.1469 +0.0812 +0.1047 +0.1029 +0.1449 +0.3503 +0.0691 ++0.0706 +0.1049 +0.1075 +0.1039 +0.1436 +0.0748 +0.3947 + ++0.3462 +0.0563 +0.1002 +0.1034 +0.1604 +0.1606 +0.0729 ++0.0483 +0.5573 +0.0722 +0.0637 +0.0892 +0.0774 +0.0920 ++0.0925 +0.0777 +0.4123 +0.0877 +0.1218 +0.1069 +0.1012 ++0.1128 +0.0811 +0.1037 +0.3227 +0.1411 +0.1235 +0.1150 ++0.1283 +0.0832 +0.1055 +0.1035 +0.3354 +0.1275 +0.1165 ++0.1482 +0.0833 +0.1069 +0.1045 +0.1471 +0.3385 +0.0714 ++0.0729 +0.1073 +0.1096 +0.1055 +0.1457 +0.0774 +0.3817 + ++0.3333 +0.0589 +0.1027 +0.1053 +0.1624 +0.1620 +0.0754 ++0.0505 +0.5436 +0.0745 +0.0657 +0.0919 +0.0796 +0.0942 ++0.0948 +0.0802 +0.3982 +0.0898 +0.1245 +0.1092 +0.1033 ++0.1149 +0.0837 +0.1061 +0.3094 +0.1436 +0.1255 +0.1168 ++0.1299 +0.0858 +0.1079 +0.1053 +0.3235 +0.1295 +0.1182 ++0.1496 +0.0857 +0.1092 +0.1062 +0.1494 +0.3259 +0.0740 ++0.0754 +0.1099 +0.1119 +0.1071 +0.1478 +0.0802 +0.3678 + ++0.3145 +0.0629 +0.1065 +0.1079 +0.1651 +0.1638 +0.0793 ++0.0539 +0.5229 +0.0781 +0.0688 +0.0959 +0.0830 +0.0974 ++0.0983 +0.0841 +0.3773 +0.0928 +0.1285 +0.1126 +0.1064 ++0.1178 +0.0875 +0.1097 +0.2902 +0.1470 +0.1285 +0.1194 ++0.1321 +0.0895 +0.1114 +0.1078 +0.3063 +0.1322 +0.1206 ++0.1512 +0.0893 +0.1126 +0.1087 +0.1526 +0.3076 +0.0779 ++0.0793 +0.1136 +0.1152 +0.1094 +0.1507 +0.0844 +0.3473 + + +[2] CLV 5: [ {(0.00021,0.01409,0.01427,0.00050,0.00055,0.00060,0.00086),(0.00024,0.01498,0.01511,0.00057,0.00063,0.00068,0.00098),(0.00026,0.01558,0.01567,0.00062,0.00068,0.00074,0.00107),(0.00029,0.01613,0.01617,0.00067,0.00074,0.00080,0.00115),(0.00032,0.01674,0.01673,0.00073,0.00080,0.00087,0.00124),(0.00036,0.01769,0.01759,0.00082,0.00090,0.00098,0.00140)} {(0.65653,0.00005,0.00054,0.00112,0.00186,0.00283,0.00020),(0.63636,0.00006,0.00062,0.00127,0.00210,0.00320,0.00023),(0.62301,0.00007,0.00067,0.00138,0.00227,0.00345,0.00025),(0.61082,0.00007,0.00073,0.00148,0.00244,0.00369,0.00027),(0.59731,0.00008,0.00079,0.00160,0.00262,0.00397,0.00030),(0.57658,0.00009,0.00089,0.00180,0.00293,0.00443,0.00034)} {(0.02043,0.00011,0.01970,0.00091,0.00123,0.00157,0.00043),(0.02151,0.00013,0.02080,0.00104,0.00139,0.00178,0.00049),(0.02221,0.00014,0.02153,0.00113,0.00151,0.00192,0.00054),(0.02285,0.00015,0.02219,0.00122,0.00162,0.00206,0.00058),(0.02355,0.00017,0.02291,0.00132,0.00175,0.00223,0.00064),(0.02459,0.00019,0.02402,0.00148,0.00196,0.00249,0.00072)} {(0.00064,0.00025,0.71614,0.00075,0.00081,0.00087,0.00094),(0.00073,0.00028,0.69846,0.00085,0.00092,0.00099,0.00107),(0.00079,0.00031,0.68669,0.00093,0.00100,0.00107,0.00116),(0.00085,0.00033,0.67588,0.00100,0.00108,0.00115,0.00125),(0.00093,0.00036,0.66384,0.00109,0.00117,0.00125,0.00135),(0.00105,0.00041,0.64524,0.00122,0.00132,0.00141,0.00152)} {(0.02483,0.00010,0.00054,0.02688,0.00136,0.00172,0.00047),(0.02606,0.00012,0.00062,0.02819,0.00154,0.00194,0.00053),(0.02686,0.00013,0.00067,0.02903,0.00166,0.00210,0.00058),(0.02757,0.00014,0.00072,0.02979,0.00178,0.00225,0.00063),(0.02834,0.00015,0.00078,0.03061,0.00192,0.00243,0.00068),(0.02950,0.00018,0.00089,0.03184,0.00215,0.00271,0.00078)} {(0.00021,0.01409,0.01427,0.00050,0.00055,0.00060,0.00086),(0.00024,0.01498,0.01511,0.00057,0.00063,0.00068,0.00098),(0.00026,0.01558,0.01567,0.00062,0.00068,0.00074,0.00107),(0.00029,0.01613,0.01617,0.00067,0.00074,0.00080,0.00115),(0.00032,0.01674,0.01673,0.00073,0.00080,0.00087,0.00124),(0.00036,0.01769,0.01759,0.00082,0.00090,0.00098,0.00140)} {(0.00332,0.00036,0.00087,0.00145,0.00162,0.64830,0.00020),(0.00375,0.00041,0.00099,0.00165,0.00184,0.62782,0.00023),(0.00405,0.00044,0.00107,0.00179,0.00199,0.61426,0.00026),(0.00434,0.00048,0.00115,0.00192,0.00214,0.60190,0.00028),(0.00466,0.00052,0.00125,0.00207,0.00231,0.58821,0.00031),(0.00519,0.00059,0.00141,0.00232,0.00258,0.56721,0.00035)} {(0.00064,0.00025,0.71614,0.00075,0.00081,0.00087,0.00094),(0.00073,0.00028,0.69846,0.00085,0.00092,0.00099,0.00107),(0.00079,0.00031,0.68669,0.00093,0.00100,0.00107,0.00116),(0.00085,0.00033,0.67588,0.00100,0.00108,0.00115,0.00125),(0.00093,0.00036,0.66384,0.00109,0.00117,0.00125,0.00135),(0.00105,0.00041,0.64524,0.00122,0.00132,0.00141,0.00152)} {(0.00025,0.01281,0.00039,0.01457,0.00061,0.00065,0.00093),(0.00029,0.01362,0.00045,0.01536,0.00069,0.00075,0.00106),(0.00032,0.01416,0.00049,0.01588,0.00075,0.00081,0.00115),(0.00035,0.01465,0.00053,0.01635,0.00081,0.00087,0.00124),(0.00038,0.01520,0.00057,0.01686,0.00088,0.00094,0.00134),(0.00043,0.01605,0.00065,0.01764,0.00099,0.00106,0.00150)} {(0.65653,0.00005,0.00054,0.00112,0.00186,0.00283,0.00020),(0.63636,0.00006,0.00062,0.00127,0.00210,0.00320,0.00023),(0.62301,0.00007,0.00067,0.00138,0.00227,0.00345,0.00025),(0.61082,0.00007,0.00073,0.00148,0.00244,0.00369,0.00027),(0.59731,0.00008,0.00079,0.00160,0.00262,0.00397,0.00030),(0.57658,0.00009,0.00089,0.00180,0.00293,0.00443,0.00034)} {(0.97205,0.95238,0.94430,0.92899,0.92555,0.97396,0.02808),(0.96994,0.94917,0.94062,0.92448,0.92089,0.97195,0.03200),(0.96850,0.94702,0.93816,0.92148,0.91779,0.97058,0.03478),(0.96716,0.94502,0.93588,0.91871,0.91494,0.96929,0.03746),(0.96564,0.94278,0.93333,0.91563,0.91176,0.96784,0.04058),(0.96324,0.93929,0.92936,0.91085,0.90685,0.96554,0.04570)} {(0.97205,0.95238,0.94430,0.92899,0.92555,0.97396,0.02808),(0.96994,0.94917,0.94062,0.92448,0.92089,0.97195,0.03200),(0.96850,0.94702,0.93816,0.92148,0.91779,0.97058,0.03478),(0.96716,0.94502,0.93588,0.91871,0.91494,0.96929,0.03746),(0.96564,0.94278,0.93333,0.91563,0.91176,0.96784,0.04058),(0.96324,0.93929,0.92936,0.91085,0.90685,0.96554,0.04570)} {(0.00668,0.00636,0.00039,0.00061,0.00083,0.00108,0.00040),(0.00713,0.00683,0.00045,0.00069,0.00095,0.00123,0.00045),(0.00743,0.00716,0.00049,0.00075,0.00103,0.00133,0.00050),(0.00770,0.00746,0.00053,0.00081,0.00111,0.00143,0.00054),(0.00801,0.00779,0.00058,0.00088,0.00120,0.00155,0.00059),(0.00848,0.00833,0.00065,0.00100,0.00135,0.00173,0.00067)} {(0.00171,0.00043,0.02012,0.66830,0.00188,0.00199,0.00211),(0.00195,0.00049,0.02127,0.64871,0.00214,0.00226,0.00240),(0.00212,0.00053,0.02203,0.63572,0.00232,0.00245,0.00260),(0.00228,0.00058,0.02272,0.62387,0.00249,0.00263,0.00279),(0.00246,0.00063,0.02349,0.61071,0.00269,0.00284,0.00301),(0.00277,0.00072,0.02465,0.59051,0.00302,0.00319,0.00338)} {(0.00171,0.00043,0.02012,0.66830,0.00188,0.00199,0.00211),(0.00195,0.00049,0.02127,0.64871,0.00214,0.00226,0.00240),(0.00212,0.00053,0.02203,0.63572,0.00232,0.00245,0.00260),(0.00228,0.00058,0.02272,0.62387,0.00249,0.00263,0.00279),(0.00246,0.00063,0.02349,0.61071,0.00269,0.00284,0.00301),(0.00277,0.00072,0.02465,0.59051,0.00302,0.00319,0.00338)} {(0.00145,0.00030,0.02491,0.00104,0.00115,0.02370,0.00043),(0.00165,0.00034,0.02625,0.00119,0.00130,0.02489,0.00050),(0.00179,0.00037,0.02714,0.00129,0.00141,0.02566,0.00055),(0.00192,0.00040,0.02793,0.00139,0.00152,0.02636,0.00059),(0.00208,0.00043,0.02881,0.00150,0.00164,0.02711,0.00065),(0.00233,0.00049,0.03013,0.00169,0.00184,0.02825,0.00073)} {(0.00290,0.00043,0.00107,0.00184,0.63922,0.00216,0.00225),(0.00328,0.00049,0.00123,0.00208,0.61844,0.00245,0.00255),(0.00355,0.00053,0.00133,0.00226,0.60471,0.00265,0.00275),(0.00381,0.00058,0.00144,0.00243,0.59220,0.00285,0.00295),(0.00410,0.00063,0.00156,0.00262,0.57835,0.00307,0.00318),(0.00458,0.00071,0.00175,0.00294,0.55715,0.00344,0.00356)} {(0.02043,0.00011,0.01970,0.00091,0.00123,0.00157,0.00043),(0.02151,0.00013,0.02080,0.00104,0.00139,0.00178,0.00049),(0.02221,0.00014,0.02153,0.00113,0.00151,0.00192,0.00054),(0.02285,0.00015,0.02219,0.00122,0.00162,0.00206,0.00058),(0.02355,0.00017,0.02291,0.00132,0.00175,0.00223,0.00064),(0.02459,0.00019,0.02402,0.00148,0.00196,0.00249,0.00072)} {(0.02483,0.00010,0.00054,0.02688,0.00136,0.00172,0.00047),(0.02606,0.00012,0.00062,0.02819,0.00154,0.00194,0.00053),(0.02686,0.00013,0.00067,0.02903,0.00166,0.00210,0.00058),(0.02757,0.00014,0.00072,0.02979,0.00178,0.00225,0.00063),(0.02834,0.00015,0.00078,0.03061,0.00192,0.00243,0.00068),(0.02950,0.00018,0.00089,0.03184,0.00215,0.00271,0.00078)} {(0.02483,0.00010,0.00054,0.02688,0.00136,0.00172,0.00047),(0.02606,0.00012,0.00062,0.02819,0.00154,0.00194,0.00053),(0.02686,0.00013,0.00067,0.02903,0.00166,0.00210,0.00058),(0.02757,0.00014,0.00072,0.02979,0.00178,0.00225,0.00063),(0.02834,0.00015,0.00078,0.03061,0.00192,0.00243,0.00068),(0.02950,0.00018,0.00089,0.03184,0.00215,0.00271,0.00078)} ] +[2] CLV 6: [ {(0.00039,0.00010,0.00031,0.00003,0.00004,0.00005,0.00002),(0.00044,0.00011,0.00035,0.00003,0.00005,0.00006,0.00002),(0.00048,0.00012,0.00038,0.00004,0.00005,0.00007,0.00002),(0.00051,0.00013,0.00040,0.00004,0.00006,0.00008,0.00003),(0.00055,0.00014,0.00043,0.00005,0.00007,0.00009,0.00003),(0.00062,0.00016,0.00048,0.00006,0.00008,0.00010,0.00004)} {(0.03404,0.00004,0.00025,0.00049,0.00069,0.01744,0.00007),(0.03477,0.00005,0.00028,0.00054,0.00077,0.01796,0.00008),(0.03518,0.00005,0.00030,0.00058,0.00082,0.01827,0.00009),(0.03551,0.00006,0.00032,0.00062,0.00087,0.01854,0.00009),(0.03581,0.00006,0.00034,0.00066,0.00093,0.01881,0.00010),(0.03615,0.00007,0.00038,0.00073,0.00102,0.01917,0.00011)} {(0.01847,0.00036,0.01790,0.00148,0.00185,0.00232,0.00015),(0.01931,0.00042,0.01878,0.00167,0.00209,0.00262,0.00019),(0.01984,0.00046,0.01934,0.00181,0.00225,0.00282,0.00021),(0.02032,0.00049,0.01985,0.00194,0.00241,0.00302,0.00024),(0.02084,0.00054,0.02040,0.00209,0.00259,0.00324,0.00027),(0.02160,0.00061,0.02123,0.00233,0.00288,0.00360,0.00032)} {(0.00025,0.00009,0.55718,0.00030,0.00033,0.00035,0.00038),(0.00029,0.00011,0.53329,0.00034,0.00037,0.00040,0.00043),(0.00031,0.00011,0.51762,0.00036,0.00040,0.00043,0.00046),(0.00033,0.00012,0.50342,0.00039,0.00042,0.00045,0.00049),(0.00035,0.00013,0.48780,0.00042,0.00045,0.00049,0.00053),(0.00039,0.00015,0.46407,0.00046,0.00050,0.00054,0.00058)} {(0.02254,0.00041,0.00115,0.02371,0.00221,0.00273,0.00019),(0.02350,0.00047,0.00130,0.02465,0.00248,0.00307,0.00023),(0.02410,0.00051,0.00140,0.02524,0.00267,0.00330,0.00026),(0.02464,0.00055,0.00151,0.02576,0.00285,0.00352,0.00029),(0.02521,0.00059,0.00162,0.02631,0.00305,0.00377,0.00033),(0.02604,0.00067,0.00181,0.02710,0.00338,0.00418,0.00039)} {(0.00001,0.00021,0.01124,0.00002,0.00003,0.00003,0.00004),(0.00001,0.00024,0.01169,0.00003,0.00003,0.00003,0.00005),(0.00002,0.00026,0.01198,0.00003,0.00003,0.00004,0.00005),(0.00002,0.00028,0.01223,0.00003,0.00004,0.00004,0.00006),(0.00002,0.00030,0.01249,0.00004,0.00004,0.00005,0.00007),(0.00003,0.00034,0.01288,0.00005,0.00005,0.00006,0.00008)} {(0.00135,0.00013,0.00032,0.00056,0.00063,0.46790,0.00007),(0.00150,0.00014,0.00036,0.00062,0.00070,0.44227,0.00008),(0.00161,0.00015,0.00039,0.00067,0.00075,0.42566,0.00008),(0.00170,0.00016,0.00041,0.00071,0.00080,0.41074,0.00009),(0.00181,0.00017,0.00044,0.00075,0.00085,0.39448,0.00010),(0.00199,0.00019,0.00048,0.00083,0.00093,0.37010,0.00011)} {(0.00025,0.00009,0.55718,0.00030,0.00033,0.00035,0.00038),(0.00029,0.00011,0.53329,0.00034,0.00037,0.00040,0.00043),(0.00031,0.00011,0.51762,0.00036,0.00040,0.00043,0.00046),(0.00033,0.00012,0.50342,0.00039,0.00042,0.00045,0.00049),(0.00035,0.00013,0.48780,0.00042,0.00045,0.00049,0.00053),(0.00039,0.00015,0.46407,0.00046,0.00050,0.00054,0.00058)} {(0.00046,0.00009,0.00002,0.00044,0.00004,0.00005,0.00002),(0.00052,0.00010,0.00002,0.00049,0.00005,0.00006,0.00002),(0.00056,0.00011,0.00002,0.00053,0.00006,0.00007,0.00003),(0.00060,0.00012,0.00002,0.00056,0.00006,0.00008,0.00003),(0.00064,0.00013,0.00003,0.00060,0.00007,0.00009,0.00003),(0.00071,0.00015,0.00003,0.00066,0.00008,0.00011,0.00004)} {(0.03404,0.00004,0.00025,0.00049,0.00069,0.01744,0.00007),(0.03477,0.00005,0.00028,0.00054,0.00077,0.01796,0.00008),(0.03518,0.00005,0.00030,0.00058,0.00082,0.01827,0.00009),(0.03551,0.00006,0.00032,0.00062,0.00087,0.01854,0.00009),(0.03581,0.00006,0.00034,0.00066,0.00093,0.01881,0.00010),(0.03615,0.00007,0.00038,0.00073,0.00102,0.01917,0.00011)} {(0.94943,0.91778,0.90467,0.88050,0.87538,0.95246,0.01824),(0.94555,0.91235,0.89856,0.87328,0.86799,0.94872,0.02108),(0.94291,0.90870,0.89447,0.86848,0.86310,0.94616,0.02312),(0.94045,0.90534,0.89071,0.86409,0.85862,0.94378,0.02511),(0.93766,0.90158,0.88651,0.85921,0.85366,0.94107,0.02745),(0.93325,0.89572,0.88000,0.85170,0.84603,0.93679,0.03135)} {(0.94943,0.91778,0.90467,0.88050,0.87538,0.95246,0.01824),(0.94555,0.91235,0.89856,0.87328,0.86799,0.94872,0.02108),(0.94291,0.90870,0.89447,0.86848,0.86310,0.94616,0.02312),(0.94045,0.90534,0.89071,0.86409,0.85862,0.94378,0.02511),(0.93766,0.90158,0.88651,0.85921,0.85366,0.94107,0.02745),(0.93325,0.89572,0.88000,0.85170,0.84603,0.93679,0.03135)} {(0.00015,0.00010,0.00046,0.00002,0.00003,0.00004,0.00002),(0.00017,0.00011,0.00052,0.00003,0.00003,0.00005,0.00002),(0.00019,0.00012,0.00056,0.00003,0.00004,0.00005,0.00002),(0.00020,0.00013,0.00060,0.00003,0.00004,0.00006,0.00003),(0.00022,0.00014,0.00065,0.00004,0.00005,0.00006,0.00003),(0.00025,0.00016,0.00073,0.00004,0.00006,0.00008,0.00004)} {(0.00074,0.00010,0.00079,0.02285,0.00054,0.01109,0.00020),(0.00083,0.00012,0.00088,0.02343,0.00060,0.01150,0.00023),(0.00089,0.00013,0.00095,0.02376,0.00065,0.01176,0.00025),(0.00095,0.00014,0.00101,0.02404,0.00069,0.01198,0.00027),(0.00102,0.00015,0.00108,0.02431,0.00074,0.01222,0.00029),(0.00112,0.00016,0.00119,0.02465,0.00082,0.01256,0.00032)} {(0.00069,0.00011,0.00088,0.02567,0.01067,0.00064,0.00067),(0.00078,0.00013,0.00098,0.02633,0.01106,0.00072,0.00076),(0.00083,0.00014,0.00105,0.02672,0.01130,0.00077,0.00081),(0.00089,0.00015,0.00112,0.02704,0.01152,0.00082,0.00087),(0.00095,0.00016,0.00120,0.02735,0.01174,0.00088,0.00093),(0.00105,0.00018,0.00132,0.02774,0.01207,0.00098,0.00103)} {(0.00006,0.00001,0.01974,0.00005,0.00006,0.00064,0.00003),(0.00007,0.00001,0.02045,0.00006,0.00007,0.00071,0.00004),(0.00008,0.00002,0.02089,0.00007,0.00008,0.00076,0.00004),(0.00009,0.00002,0.02127,0.00008,0.00008,0.00081,0.00005),(0.00010,0.00002,0.02167,0.00009,0.00009,0.00086,0.00005),(0.00012,0.00002,0.02222,0.00010,0.00011,0.00095,0.00007)} {(0.00115,0.00015,0.00040,0.00071,0.45642,0.00084,0.00088),(0.00128,0.00017,0.00045,0.00079,0.43070,0.00094,0.00098),(0.00137,0.00018,0.00048,0.00084,0.41406,0.00100,0.00104),(0.00146,0.00019,0.00051,0.00089,0.39915,0.00106,0.00111),(0.00155,0.00021,0.00054,0.00095,0.38291,0.00113,0.00118),(0.00170,0.00023,0.00060,0.00105,0.35862,0.00125,0.00129)} {(0.01518,0.00000,0.00043,0.00005,0.00008,0.00013,0.00001),(0.01564,0.00000,0.00048,0.00006,0.00010,0.00015,0.00002),(0.01591,0.00000,0.00052,0.00007,0.00011,0.00017,0.00002),(0.01615,0.00000,0.00055,0.00008,0.00012,0.00019,0.00002),(0.01639,0.00000,0.00059,0.00009,0.00014,0.00021,0.00002),(0.01671,0.00001,0.00066,0.00010,0.00016,0.00024,0.00003)} {(0.00058,0.00001,0.00100,0.00067,0.00007,0.00008,0.00003),(0.00064,0.00001,0.00112,0.00075,0.00008,0.00010,0.00004),(0.00069,0.00001,0.00120,0.00080,0.00009,0.00011,0.00005),(0.00073,0.00001,0.00128,0.00085,0.00010,0.00012,0.00005),(0.00078,0.00001,0.00137,0.00091,0.00011,0.00014,0.00006),(0.00086,0.00001,0.00151,0.00099,0.00013,0.00016,0.00007)} {(0.00058,0.00001,0.00100,0.00067,0.00007,0.00008,0.00003),(0.00064,0.00001,0.00112,0.00075,0.00008,0.00010,0.00004),(0.00069,0.00001,0.00120,0.00080,0.00009,0.00011,0.00005),(0.00073,0.00001,0.00128,0.00085,0.00010,0.00012,0.00005),(0.00078,0.00001,0.00137,0.00091,0.00011,0.00014,0.00006),(0.00086,0.00001,0.00151,0.00099,0.00013,0.00016,0.00007)} ] +[2] CLV 7: [ {(0.0006,0.0002,0.7161,0.0007,0.0008,0.0009,0.0009),(0.0007,0.0003,0.6985,0.0009,0.0009,0.0010,0.0011),(0.0008,0.0003,0.6867,0.0009,0.0010,0.0011,0.0012),(0.0009,0.0003,0.6759,0.0010,0.0011,0.0012,0.0012),(0.0009,0.0004,0.6638,0.0011,0.0012,0.0012,0.0013),(0.0010,0.0004,0.6452,0.0012,0.0013,0.0014,0.0015)} {(0.0033,0.0004,0.0009,0.0015,0.0016,0.6483,0.0002),(0.0038,0.0004,0.0010,0.0016,0.0018,0.6278,0.0002),(0.0041,0.0004,0.0011,0.0018,0.0020,0.6143,0.0003),(0.0043,0.0005,0.0012,0.0019,0.0021,0.6019,0.0003),(0.0047,0.0005,0.0012,0.0021,0.0023,0.5882,0.0003),(0.0052,0.0006,0.0014,0.0023,0.0026,0.5672,0.0004)} {(0.0248,0.0001,0.0005,0.0269,0.0014,0.0017,0.0005),(0.0261,0.0001,0.0006,0.0282,0.0015,0.0019,0.0005),(0.0269,0.0001,0.0007,0.0290,0.0017,0.0021,0.0006),(0.0276,0.0001,0.0007,0.0298,0.0018,0.0023,0.0006),(0.0283,0.0002,0.0008,0.0306,0.0019,0.0024,0.0007),(0.0295,0.0002,0.0009,0.0318,0.0022,0.0027,0.0008)} {(0.0006,0.0002,0.7161,0.0007,0.0008,0.0009,0.0009),(0.0007,0.0003,0.6985,0.0009,0.0009,0.0010,0.0011),(0.0008,0.0003,0.6867,0.0009,0.0010,0.0011,0.0012),(0.0009,0.0003,0.6759,0.0010,0.0011,0.0012,0.0012),(0.0009,0.0004,0.6638,0.0011,0.0012,0.0012,0.0013),(0.0010,0.0004,0.6452,0.0012,0.0013,0.0014,0.0015)} {(0.0004,0.0186,0.0006,0.0008,0.0154,0.0009,0.0013),(0.0005,0.0197,0.0006,0.0009,0.0162,0.0011,0.0015),(0.0006,0.0205,0.0007,0.0010,0.0168,0.0012,0.0016),(0.0006,0.0212,0.0007,0.0010,0.0173,0.0013,0.0018),(0.0007,0.0220,0.0008,0.0011,0.0178,0.0014,0.0019),(0.0008,0.0232,0.0009,0.0013,0.0186,0.0015,0.0021)} {(0.0017,0.0003,0.0008,0.0345,0.0251,0.0015,0.0016),(0.0019,0.0003,0.0009,0.0361,0.0263,0.0017,0.0018),(0.0020,0.0004,0.0009,0.0372,0.0271,0.0018,0.0019),(0.0022,0.0004,0.0010,0.0381,0.0278,0.0020,0.0021),(0.0023,0.0004,0.0011,0.0392,0.0286,0.0021,0.0022),(0.0026,0.0005,0.0012,0.0407,0.0297,0.0024,0.0025)} {(0.0033,0.0004,0.0009,0.0015,0.0016,0.6483,0.0002),(0.0038,0.0004,0.0010,0.0016,0.0018,0.6278,0.0002),(0.0041,0.0004,0.0011,0.0018,0.0020,0.6143,0.0003),(0.0043,0.0005,0.0012,0.0019,0.0021,0.6019,0.0003),(0.0047,0.0005,0.0012,0.0021,0.0023,0.5882,0.0003),(0.0052,0.0006,0.0014,0.0023,0.0026,0.5672,0.0004)} {(0.0006,0.0002,0.7161,0.0007,0.0008,0.0009,0.0009),(0.0007,0.0003,0.6985,0.0009,0.0009,0.0010,0.0011),(0.0008,0.0003,0.6867,0.0009,0.0010,0.0011,0.0012),(0.0009,0.0003,0.6759,0.0010,0.0011,0.0012,0.0012),(0.0009,0.0004,0.6638,0.0011,0.0012,0.0012,0.0013),(0.0010,0.0004,0.6452,0.0012,0.0013,0.0014,0.0015)} {(0.0204,0.0001,0.0197,0.0009,0.0012,0.0016,0.0004),(0.0215,0.0001,0.0208,0.0010,0.0014,0.0018,0.0005),(0.0222,0.0001,0.0215,0.0011,0.0015,0.0019,0.0005),(0.0228,0.0002,0.0222,0.0012,0.0016,0.0021,0.0006),(0.0235,0.0002,0.0229,0.0013,0.0018,0.0022,0.0006),(0.0246,0.0002,0.0240,0.0015,0.0020,0.0025,0.0007)} {(0.6565,0.0000,0.0005,0.0011,0.0019,0.0028,0.0002),(0.6364,0.0001,0.0006,0.0013,0.0021,0.0032,0.0002),(0.6230,0.0001,0.0007,0.0014,0.0023,0.0035,0.0003),(0.6108,0.0001,0.0007,0.0015,0.0024,0.0037,0.0003),(0.5973,0.0001,0.0008,0.0016,0.0026,0.0040,0.0003),(0.5766,0.0001,0.0009,0.0018,0.0029,0.0044,0.0003)} {(0.9721,0.9524,0.9443,0.9290,0.9256,0.9740,0.0281),(0.9699,0.9492,0.9406,0.9245,0.9209,0.9719,0.0320),(0.9685,0.9470,0.9382,0.9215,0.9178,0.9706,0.0348),(0.9672,0.9450,0.9359,0.9187,0.9149,0.9693,0.0375),(0.9656,0.9428,0.9333,0.9156,0.9118,0.9678,0.0406),(0.9632,0.9393,0.9294,0.9109,0.9069,0.9655,0.0457)} {(0.9721,0.9524,0.9443,0.9290,0.9256,0.9740,0.0281),(0.9699,0.9492,0.9406,0.9245,0.9209,0.9719,0.0320),(0.9685,0.9470,0.9382,0.9215,0.9178,0.9706,0.0348),(0.9672,0.9450,0.9359,0.9187,0.9149,0.9693,0.0375),(0.9656,0.9428,0.9333,0.9156,0.9118,0.9678,0.0406),(0.9632,0.9393,0.9294,0.9109,0.9069,0.9655,0.0457)} {(0.6565,0.0000,0.0005,0.0011,0.0019,0.0028,0.0002),(0.6364,0.0001,0.0006,0.0013,0.0021,0.0032,0.0002),(0.6230,0.0001,0.0007,0.0014,0.0023,0.0035,0.0003),(0.6108,0.0001,0.0007,0.0015,0.0024,0.0037,0.0003),(0.5973,0.0001,0.0008,0.0016,0.0026,0.0040,0.0003),(0.5766,0.0001,0.0009,0.0018,0.0029,0.0044,0.0003)} {(0.0004,0.0186,0.0006,0.0008,0.0154,0.0009,0.0013),(0.0005,0.0197,0.0006,0.0009,0.0162,0.0011,0.0015),(0.0006,0.0205,0.0007,0.0010,0.0168,0.0012,0.0016),(0.0006,0.0212,0.0007,0.0010,0.0173,0.0013,0.0018),(0.0007,0.0220,0.0008,0.0011,0.0178,0.0014,0.0019),(0.0008,0.0232,0.0009,0.0013,0.0186,0.0015,0.0021)} {(0.9721,0.9524,0.9443,0.9290,0.9256,0.9740,0.0281),(0.9699,0.9492,0.9406,0.9245,0.9209,0.9719,0.0320),(0.9685,0.9470,0.9382,0.9215,0.9178,0.9706,0.0348),(0.9672,0.9450,0.9359,0.9187,0.9149,0.9693,0.0375),(0.9656,0.9428,0.9333,0.9156,0.9118,0.9678,0.0406),(0.9632,0.9393,0.9294,0.9109,0.9069,0.9655,0.0457)} {(0.0008,0.0002,0.0196,0.0220,0.0009,0.0009,0.0010),(0.0009,0.0003,0.0207,0.0231,0.0010,0.0011,0.0012),(0.0010,0.0003,0.0214,0.0238,0.0011,0.0012,0.0012),(0.0010,0.0003,0.0220,0.0245,0.0012,0.0013,0.0013),(0.0011,0.0003,0.0227,0.0252,0.0013,0.0014,0.0015),(0.0013,0.0004,0.0238,0.0263,0.0014,0.0015,0.0016)} {(0.9721,0.9524,0.9443,0.9290,0.9256,0.9740,0.0281),(0.9699,0.9492,0.9406,0.9245,0.9209,0.9719,0.0320),(0.9685,0.9470,0.9382,0.9215,0.9178,0.9706,0.0348),(0.9672,0.9450,0.9359,0.9187,0.9149,0.9693,0.0375),(0.9656,0.9428,0.9333,0.9156,0.9118,0.9678,0.0406),(0.9632,0.9393,0.9294,0.9109,0.9069,0.9655,0.0457)} {(0.6565,0.0000,0.0005,0.0011,0.0019,0.0028,0.0002),(0.6364,0.0001,0.0006,0.0013,0.0021,0.0032,0.0002),(0.6230,0.0001,0.0007,0.0014,0.0023,0.0035,0.0003),(0.6108,0.0001,0.0007,0.0015,0.0024,0.0037,0.0003),(0.5973,0.0001,0.0008,0.0016,0.0026,0.0040,0.0003),(0.5766,0.0001,0.0009,0.0018,0.0029,0.0044,0.0003)} {(0.6565,0.0000,0.0005,0.0011,0.0019,0.0028,0.0002),(0.6364,0.0001,0.0006,0.0013,0.0021,0.0032,0.0002),(0.6230,0.0001,0.0007,0.0014,0.0023,0.0035,0.0003),(0.6108,0.0001,0.0007,0.0015,0.0024,0.0037,0.0003),(0.5973,0.0001,0.0008,0.0016,0.0026,0.0040,0.0003),(0.5766,0.0001,0.0009,0.0018,0.0029,0.0044,0.0003)} {(0.0033,0.0004,0.0009,0.0015,0.0016,0.6483,0.0002),(0.0038,0.0004,0.0010,0.0016,0.0018,0.6278,0.0002),(0.0041,0.0004,0.0011,0.0018,0.0020,0.6143,0.0003),(0.0043,0.0005,0.0012,0.0019,0.0021,0.6019,0.0003),(0.0047,0.0005,0.0012,0.0021,0.0023,0.5882,0.0003),(0.0052,0.0006,0.0014,0.0023,0.0026,0.5672,0.0004)} ] + + + TEST alpha(ncats) = 100.00( 6), mode = MEDIAN Rates: 0.85509 0.93017 0.97570 1.01803 1.06643 1.15457 @@ -1217,12 +2423,21 @@ Rates: 0.85509 0.93017 0.97570 1.01803 [2] CLV 6: [ {(0.00038,0.00009,0.00030,0.00003,0.00004,0.00005,0.00002),(0.00044,0.00011,0.00035,0.00003,0.00005,0.00006,0.00002),(0.00048,0.00012,0.00038,0.00004,0.00005,0.00007,0.00002),(0.00051,0.00013,0.00040,0.00004,0.00006,0.00008,0.00003),(0.00055,0.00014,0.00043,0.00005,0.00007,0.00009,0.00003),(0.00063,0.00016,0.00049,0.00006,0.00008,0.00010,0.00004)} {(0.03391,0.00004,0.00025,0.00048,0.00068,0.01735,0.00007),(0.03476,0.00005,0.00028,0.00054,0.00076,0.01795,0.00008),(0.03518,0.00005,0.00030,0.00058,0.00082,0.01827,0.00008),(0.03550,0.00006,0.00032,0.00062,0.00087,0.01853,0.00009),(0.03581,0.00006,0.00034,0.00066,0.00093,0.01881,0.00010),(0.03619,0.00007,0.00038,0.00074,0.00103,0.01922,0.00011)} {(0.01833,0.00036,0.01776,0.00145,0.00182,0.00228,0.00015),(0.01929,0.00042,0.01876,0.00167,0.00208,0.00261,0.00019),(0.01983,0.00046,0.01933,0.00181,0.00225,0.00282,0.00021),(0.02032,0.00049,0.01985,0.00194,0.00240,0.00301,0.00024),(0.02084,0.00054,0.02041,0.00209,0.00259,0.00324,0.00027),(0.02172,0.00062,0.02136,0.00237,0.00292,0.00366,0.00033)} {(0.00025,0.00009,0.56105,0.00030,0.00032,0.00035,0.00038),(0.00028,0.00011,0.53374,0.00034,0.00037,0.00039,0.00043),(0.00031,0.00011,0.51787,0.00036,0.00039,0.00043,0.00046),(0.00033,0.00012,0.50357,0.00039,0.00042,0.00045,0.00049),(0.00035,0.00013,0.48773,0.00042,0.00045,0.00049,0.00053),(0.00040,0.00015,0.46021,0.00047,0.00051,0.00055,0.00059)} {(0.02239,0.00040,0.00112,0.02355,0.00217,0.00268,0.00018),(0.02348,0.00046,0.00130,0.02463,0.00248,0.00306,0.00023),(0.02409,0.00051,0.00140,0.02523,0.00267,0.00330,0.00026),(0.02463,0.00055,0.00150,0.02576,0.00284,0.00352,0.00029),(0.02521,0.00059,0.00162,0.02631,0.00305,0.00378,0.00033),(0.02617,0.00068,0.00185,0.02722,0.00343,0.00425,0.00040)} {(0.00001,0.00021,0.01116,0.00002,0.00002,0.00003,0.00004),(0.00001,0.00024,0.01169,0.00003,0.00003,0.00003,0.00005),(0.00002,0.00026,0.01197,0.00003,0.00003,0.00004,0.00005),(0.00002,0.00028,0.01223,0.00003,0.00004,0.00004,0.00006),(0.00002,0.00030,0.01250,0.00004,0.00004,0.00005,0.00007),(0.00003,0.00035,0.01294,0.00005,0.00005,0.00006,0.00008)} {(0.00133,0.00013,0.00032,0.00055,0.00062,0.47209,0.00007),(0.00150,0.00014,0.00036,0.00062,0.00070,0.44276,0.00008),(0.00160,0.00015,0.00039,0.00067,0.00075,0.42593,0.00008),(0.00170,0.00016,0.00041,0.00071,0.00080,0.41089,0.00009),(0.00181,0.00017,0.00044,0.00075,0.00085,0.39441,0.00010),(0.00202,0.00019,0.00049,0.00084,0.00094,0.36618,0.00011)} {(0.00025,0.00009,0.56105,0.00030,0.00032,0.00035,0.00038),(0.00028,0.00011,0.53374,0.00034,0.00037,0.00039,0.00043),(0.00031,0.00011,0.51787,0.00036,0.00039,0.00043,0.00046),(0.00033,0.00012,0.50357,0.00039,0.00042,0.00045,0.00049),(0.00035,0.00013,0.48773,0.00042,0.00045,0.00049,0.00053),(0.00040,0.00015,0.46021,0.00047,0.00051,0.00055,0.00059)} {(0.00045,0.00008,0.00002,0.00043,0.00004,0.00005,0.00002),(0.00052,0.00010,0.00002,0.00049,0.00005,0.00006,0.00002),(0.00056,0.00011,0.00002,0.00053,0.00006,0.00007,0.00003),(0.00060,0.00012,0.00002,0.00056,0.00006,0.00008,0.00003),(0.00064,0.00013,0.00003,0.00060,0.00007,0.00009,0.00003),(0.00073,0.00015,0.00003,0.00067,0.00009,0.00011,0.00004)} {(0.03391,0.00004,0.00025,0.00048,0.00068,0.01735,0.00007),(0.03476,0.00005,0.00028,0.00054,0.00076,0.01795,0.00008),(0.03518,0.00005,0.00030,0.00058,0.00082,0.01827,0.00008),(0.03550,0.00006,0.00032,0.00062,0.00087,0.01853,0.00009),(0.03581,0.00006,0.00034,0.00066,0.00093,0.01881,0.00010),(0.03619,0.00007,0.00038,0.00074,0.00103,0.01922,0.00011)} {(0.95005,0.91865,0.90565,0.88166,0.87657,0.95305,0.01780),(0.94563,0.91245,0.89867,0.87342,0.86814,0.94879,0.02102),(0.94295,0.90876,0.89454,0.86856,0.86318,0.94621,0.02309),(0.94047,0.90538,0.89075,0.86414,0.85867,0.94380,0.02509),(0.93765,0.90156,0.88649,0.85919,0.85364,0.94106,0.02746),(0.93252,0.89476,0.87893,0.85047,0.84478,0.93607,0.03203)} {(0.95005,0.91865,0.90565,0.88166,0.87657,0.95305,0.01780),(0.94563,0.91245,0.89867,0.87342,0.86814,0.94879,0.02102),(0.94295,0.90876,0.89454,0.86856,0.86318,0.94621,0.02309),(0.94047,0.90538,0.89075,0.86414,0.85867,0.94380,0.02509),(0.93765,0.90156,0.88649,0.85919,0.85364,0.94106,0.02746),(0.93252,0.89476,0.87893,0.85047,0.84478,0.93607,0.03203)} {(0.00015,0.00009,0.00045,0.00002,0.00003,0.00004,0.00002),(0.00017,0.00011,0.00052,0.00003,0.00003,0.00005,0.00002),(0.00019,0.00012,0.00056,0.00003,0.00004,0.00005,0.00002),(0.00020,0.00013,0.00060,0.00003,0.00004,0.00006,0.00003),(0.00022,0.00014,0.00065,0.00004,0.00005,0.00006,0.00003),(0.00025,0.00016,0.00074,0.00005,0.00006,0.00008,0.00004)} {(0.00073,0.00010,0.00077,0.02274,0.00053,0.01102,0.00020),(0.00083,0.00012,0.00088,0.02342,0.00060,0.01149,0.00023),(0.00089,0.00013,0.00094,0.02376,0.00065,0.01175,0.00025),(0.00095,0.00014,0.00101,0.02404,0.00069,0.01198,0.00027),(0.00102,0.00015,0.00108,0.02431,0.00074,0.01222,0.00029),(0.00114,0.00017,0.00121,0.02469,0.00083,0.01261,0.00033)} {(0.00068,0.00011,0.00086,0.02556,0.01060,0.00063,0.00066),(0.00077,0.00013,0.00098,0.02632,0.01105,0.00072,0.00076),(0.00083,0.00014,0.00105,0.02671,0.01130,0.00077,0.00081),(0.00089,0.00015,0.00112,0.02703,0.01152,0.00082,0.00087),(0.00095,0.00016,0.00120,0.02735,0.01174,0.00088,0.00093),(0.00107,0.00018,0.00135,0.02779,0.01212,0.00099,0.00104)} {(0.00006,0.00001,0.01962,0.00005,0.00005,0.00063,0.00003),(0.00007,0.00001,0.02044,0.00006,0.00007,0.00071,0.00004),(0.00008,0.00002,0.02088,0.00007,0.00008,0.00076,0.00004),(0.00009,0.00002,0.02127,0.00008,0.00008,0.00081,0.00005),(0.00010,0.00002,0.02167,0.00009,0.00009,0.00086,0.00005),(0.00013,0.00003,0.02231,0.00010,0.00012,0.00096,0.00007)} {(0.00113,0.00015,0.00039,0.00069,0.46063,0.00082,0.00086),(0.00128,0.00017,0.00044,0.00078,0.43119,0.00093,0.00097),(0.00137,0.00018,0.00048,0.00084,0.41433,0.00100,0.00104),(0.00146,0.00019,0.00051,0.00089,0.39930,0.00106,0.00111),(0.00155,0.00021,0.00054,0.00095,0.38284,0.00113,0.00118),(0.00173,0.00023,0.00061,0.00107,0.35471,0.00126,0.00131)} {(0.01510,0.00000,0.00042,0.00005,0.00008,0.00012,0.00001),(0.01563,0.00000,0.00048,0.00006,0.00010,0.00015,0.00002),(0.01591,0.00000,0.00052,0.00007,0.00011,0.00017,0.00002),(0.01615,0.00000,0.00055,0.00008,0.00012,0.00019,0.00002),(0.01639,0.00000,0.00059,0.00009,0.00014,0.00021,0.00002),(0.01676,0.00001,0.00067,0.00011,0.00017,0.00025,0.00003)} {(0.00057,0.00001,0.00098,0.00066,0.00006,0.00008,0.00003),(0.00064,0.00001,0.00112,0.00075,0.00008,0.00010,0.00004),(0.00069,0.00001,0.00120,0.00080,0.00009,0.00011,0.00005),(0.00073,0.00001,0.00128,0.00085,0.00010,0.00012,0.00005),(0.00078,0.00001,0.00137,0.00091,0.00011,0.00014,0.00006),(0.00087,0.00001,0.00153,0.00101,0.00013,0.00016,0.00007)} {(0.00057,0.00001,0.00098,0.00066,0.00006,0.00008,0.00003),(0.00064,0.00001,0.00112,0.00075,0.00008,0.00010,0.00004),(0.00069,0.00001,0.00120,0.00080,0.00009,0.00011,0.00005),(0.00073,0.00001,0.00128,0.00085,0.00010,0.00012,0.00005),(0.00078,0.00001,0.00137,0.00091,0.00011,0.00014,0.00006),(0.00087,0.00001,0.00153,0.00101,0.00013,0.00016,0.00007)} ] [2] CLV 7: [ {(0.0006,0.0002,0.7190,0.0007,0.0008,0.0008,0.0009),(0.0007,0.0003,0.6988,0.0009,0.0009,0.0010,0.0011),(0.0008,0.0003,0.6869,0.0009,0.0010,0.0011,0.0012),(0.0009,0.0003,0.6760,0.0010,0.0011,0.0012,0.0012),(0.0009,0.0004,0.6638,0.0011,0.0012,0.0013,0.0013),(0.0011,0.0004,0.6422,0.0012,0.0013,0.0014,0.0015)} {(0.0033,0.0003,0.0008,0.0014,0.0016,0.6516,0.0002),(0.0037,0.0004,0.0010,0.0016,0.0018,0.6282,0.0002),(0.0040,0.0004,0.0011,0.0018,0.0020,0.6145,0.0003),(0.0043,0.0005,0.0012,0.0019,0.0021,0.6020,0.0003),(0.0047,0.0005,0.0013,0.0021,0.0023,0.5881,0.0003),(0.0053,0.0006,0.0014,0.0024,0.0026,0.5638,0.0004)} {(0.0246,0.0001,0.0005,0.0267,0.0013,0.0017,0.0005),(0.0260,0.0001,0.0006,0.0282,0.0015,0.0019,0.0005),(0.0268,0.0001,0.0007,0.0290,0.0017,0.0021,0.0006),(0.0276,0.0001,0.0007,0.0298,0.0018,0.0023,0.0006),(0.0283,0.0002,0.0008,0.0306,0.0019,0.0024,0.0007),(0.0297,0.0002,0.0009,0.0320,0.0022,0.0028,0.0008)} {(0.0006,0.0002,0.7190,0.0007,0.0008,0.0008,0.0009),(0.0007,0.0003,0.6988,0.0009,0.0009,0.0010,0.0011),(0.0008,0.0003,0.6869,0.0009,0.0010,0.0011,0.0012),(0.0009,0.0003,0.6760,0.0010,0.0011,0.0012,0.0012),(0.0009,0.0004,0.6638,0.0011,0.0012,0.0013,0.0013),(0.0011,0.0004,0.6422,0.0012,0.0013,0.0014,0.0015)} {(0.0004,0.0184,0.0005,0.0008,0.0153,0.0009,0.0013),(0.0005,0.0197,0.0006,0.0009,0.0162,0.0011,0.0015),(0.0006,0.0205,0.0007,0.0010,0.0168,0.0012,0.0016),(0.0006,0.0212,0.0007,0.0010,0.0173,0.0013,0.0018),(0.0007,0.0220,0.0008,0.0011,0.0178,0.0014,0.0019),(0.0008,0.0234,0.0009,0.0013,0.0187,0.0016,0.0022)} {(0.0016,0.0003,0.0007,0.0342,0.0249,0.0015,0.0015),(0.0019,0.0003,0.0009,0.0361,0.0263,0.0017,0.0018),(0.0020,0.0004,0.0009,0.0372,0.0271,0.0018,0.0019),(0.0022,0.0004,0.0010,0.0381,0.0278,0.0020,0.0021),(0.0023,0.0004,0.0011,0.0392,0.0286,0.0021,0.0022),(0.0027,0.0005,0.0013,0.0410,0.0299,0.0024,0.0025)} {(0.0033,0.0003,0.0008,0.0014,0.0016,0.6516,0.0002),(0.0037,0.0004,0.0010,0.0016,0.0018,0.6282,0.0002),(0.0040,0.0004,0.0011,0.0018,0.0020,0.6145,0.0003),(0.0043,0.0005,0.0012,0.0019,0.0021,0.6020,0.0003),(0.0047,0.0005,0.0013,0.0021,0.0023,0.5881,0.0003),(0.0053,0.0006,0.0014,0.0024,0.0026,0.5638,0.0004)} {(0.0006,0.0002,0.7190,0.0007,0.0008,0.0008,0.0009),(0.0007,0.0003,0.6988,0.0009,0.0009,0.0010,0.0011),(0.0008,0.0003,0.6869,0.0009,0.0010,0.0011,0.0012),(0.0009,0.0003,0.6760,0.0010,0.0011,0.0012,0.0012),(0.0009,0.0004,0.6638,0.0011,0.0012,0.0013,0.0013),(0.0011,0.0004,0.6422,0.0012,0.0013,0.0014,0.0015)} {(0.0203,0.0001,0.0195,0.0009,0.0012,0.0015,0.0004),(0.0215,0.0001,0.0208,0.0010,0.0014,0.0018,0.0005),(0.0222,0.0001,0.0215,0.0011,0.0015,0.0019,0.0005),(0.0228,0.0002,0.0222,0.0012,0.0016,0.0021,0.0006),(0.0235,0.0002,0.0229,0.0013,0.0018,0.0022,0.0006),(0.0248,0.0002,0.0242,0.0015,0.0020,0.0025,0.0007)} {(0.6598,0.0000,0.0005,0.0011,0.0018,0.0028,0.0002),(0.6367,0.0001,0.0006,0.0013,0.0021,0.0032,0.0002),(0.6232,0.0001,0.0007,0.0014,0.0023,0.0034,0.0003),(0.6110,0.0001,0.0007,0.0015,0.0024,0.0037,0.0003),(0.5973,0.0001,0.0008,0.0016,0.0026,0.0040,0.0003),(0.5732,0.0001,0.0009,0.0018,0.0030,0.0045,0.0004)} {(0.9724,0.9529,0.9449,0.9297,0.9263,0.9743,0.0275),(0.9700,0.9492,0.9407,0.9246,0.9210,0.9720,0.0319),(0.9685,0.9471,0.9382,0.9215,0.9178,0.9706,0.0347),(0.9672,0.9450,0.9359,0.9187,0.9150,0.9693,0.0374),(0.9656,0.9428,0.9333,0.9156,0.9117,0.9678,0.0406),(0.9628,0.9387,0.9287,0.9101,0.9060,0.9651,0.0466)} {(0.9724,0.9529,0.9449,0.9297,0.9263,0.9743,0.0275),(0.9700,0.9492,0.9407,0.9246,0.9210,0.9720,0.0319),(0.9685,0.9471,0.9382,0.9215,0.9178,0.9706,0.0347),(0.9672,0.9450,0.9359,0.9187,0.9150,0.9693,0.0374),(0.9656,0.9428,0.9333,0.9156,0.9117,0.9678,0.0406),(0.9628,0.9387,0.9287,0.9101,0.9060,0.9651,0.0466)} {(0.6598,0.0000,0.0005,0.0011,0.0018,0.0028,0.0002),(0.6367,0.0001,0.0006,0.0013,0.0021,0.0032,0.0002),(0.6232,0.0001,0.0007,0.0014,0.0023,0.0034,0.0003),(0.6110,0.0001,0.0007,0.0015,0.0024,0.0037,0.0003),(0.5973,0.0001,0.0008,0.0016,0.0026,0.0040,0.0003),(0.5732,0.0001,0.0009,0.0018,0.0030,0.0045,0.0004)} {(0.0004,0.0184,0.0005,0.0008,0.0153,0.0009,0.0013),(0.0005,0.0197,0.0006,0.0009,0.0162,0.0011,0.0015),(0.0006,0.0205,0.0007,0.0010,0.0168,0.0012,0.0016),(0.0006,0.0212,0.0007,0.0010,0.0173,0.0013,0.0018),(0.0007,0.0220,0.0008,0.0011,0.0178,0.0014,0.0019),(0.0008,0.0234,0.0009,0.0013,0.0187,0.0016,0.0022)} {(0.9724,0.9529,0.9449,0.9297,0.9263,0.9743,0.0275),(0.9700,0.9492,0.9407,0.9246,0.9210,0.9720,0.0319),(0.9685,0.9471,0.9382,0.9215,0.9178,0.9706,0.0347),(0.9672,0.9450,0.9359,0.9187,0.9150,0.9693,0.0374),(0.9656,0.9428,0.9333,0.9156,0.9117,0.9678,0.0406),(0.9628,0.9387,0.9287,0.9101,0.9060,0.9651,0.0466)} {(0.0008,0.0002,0.0194,0.0218,0.0009,0.0009,0.0010),(0.0009,0.0003,0.0206,0.0231,0.0010,0.0011,0.0011),(0.0010,0.0003,0.0214,0.0238,0.0011,0.0012,0.0012),(0.0010,0.0003,0.0220,0.0245,0.0012,0.0013,0.0013),(0.0011,0.0003,0.0227,0.0252,0.0013,0.0014,0.0015),(0.0013,0.0004,0.0240,0.0265,0.0015,0.0016,0.0017)} {(0.9724,0.9529,0.9449,0.9297,0.9263,0.9743,0.0275),(0.9700,0.9492,0.9407,0.9246,0.9210,0.9720,0.0319),(0.9685,0.9471,0.9382,0.9215,0.9178,0.9706,0.0347),(0.9672,0.9450,0.9359,0.9187,0.9150,0.9693,0.0374),(0.9656,0.9428,0.9333,0.9156,0.9117,0.9678,0.0406),(0.9628,0.9387,0.9287,0.9101,0.9060,0.9651,0.0466)} {(0.6598,0.0000,0.0005,0.0011,0.0018,0.0028,0.0002),(0.6367,0.0001,0.0006,0.0013,0.0021,0.0032,0.0002),(0.6232,0.0001,0.0007,0.0014,0.0023,0.0034,0.0003),(0.6110,0.0001,0.0007,0.0015,0.0024,0.0037,0.0003),(0.5973,0.0001,0.0008,0.0016,0.0026,0.0040,0.0003),(0.5732,0.0001,0.0009,0.0018,0.0030,0.0045,0.0004)} {(0.6598,0.0000,0.0005,0.0011,0.0018,0.0028,0.0002),(0.6367,0.0001,0.0006,0.0013,0.0021,0.0032,0.0002),(0.6232,0.0001,0.0007,0.0014,0.0023,0.0034,0.0003),(0.6110,0.0001,0.0007,0.0015,0.0024,0.0037,0.0003),(0.5973,0.0001,0.0008,0.0016,0.0026,0.0040,0.0003),(0.5732,0.0001,0.0009,0.0018,0.0030,0.0045,0.0004)} {(0.0033,0.0003,0.0008,0.0014,0.0016,0.6516,0.0002),(0.0037,0.0004,0.0010,0.0016,0.0018,0.6282,0.0002),(0.0040,0.0004,0.0011,0.0018,0.0020,0.6145,0.0003),(0.0043,0.0005,0.0012,0.0019,0.0021,0.6020,0.0003),(0.0047,0.0005,0.0013,0.0021,0.0023,0.5881,0.0003),(0.0053,0.0006,0.0014,0.0024,0.0026,0.5638,0.0004)} ] -ti/tv:alpha(ncats) = 0.10( 1) logL: -148.836565 -ti/tv:alpha(ncats) = 1.25( 1) logL: -148.836565 -ti/tv:alpha(ncats) = 100.00( 1) logL: -148.836565 -ti/tv:alpha(ncats) = 0.10( 4) logL: -152.612902 -ti/tv:alpha(ncats) = 1.25( 4) logL: -147.485679 -ti/tv:alpha(ncats) = 100.00( 4) logL: -148.796866 -ti/tv:alpha(ncats) = 0.10( 6) logL: -153.650711 -ti/tv:alpha(ncats) = 1.25( 6) logL: -147.533339 -ti/tv:alpha(ncats) = 100.00( 6) logL: -148.794223 +ti/tv:alpha(ncats) = 0.10( 1), mode = MEDIAN logL: -148.836565 +ti/tv:alpha(ncats) = 0.10( 1), mode = MEAN logL: -148.836565 +ti/tv:alpha(ncats) = 1.25( 1), mode = MEDIAN logL: -148.836565 +ti/tv:alpha(ncats) = 1.25( 1), mode = MEAN logL: -148.836565 +ti/tv:alpha(ncats) = 100.00( 1), mode = MEDIAN logL: -148.836565 +ti/tv:alpha(ncats) = 100.00( 1), mode = MEAN logL: -148.836565 +ti/tv:alpha(ncats) = 0.10( 4), mode = MEDIAN logL: -152.266936 +ti/tv:alpha(ncats) = 0.10( 4), mode = MEAN logL: -152.612902 +ti/tv:alpha(ncats) = 1.25( 4), mode = MEDIAN logL: -147.510350 +ti/tv:alpha(ncats) = 1.25( 4), mode = MEAN logL: -147.485679 +ti/tv:alpha(ncats) = 100.00( 4), mode = MEDIAN logL: -148.803590 +ti/tv:alpha(ncats) = 100.00( 4), mode = MEAN logL: -148.796866 +ti/tv:alpha(ncats) = 0.10( 6), mode = MEDIAN logL: -152.949862 +ti/tv:alpha(ncats) = 0.10( 6), mode = MEAN logL: -153.650711 +ti/tv:alpha(ncats) = 1.25( 6), mode = MEDIAN logL: -147.522213 +ti/tv:alpha(ncats) = 1.25( 6), mode = MEAN logL: -147.533339 +ti/tv:alpha(ncats) = 100.00( 6), mode = MEDIAN logL: -148.799434 +ti/tv:alpha(ncats) = 100.00( 6), mode = MEAN logL: -148.794223 diff --git a/test/out/alpha-cats.out b/test/out/alpha-cats.out index c6c5cf3..561d62b 100644 --- a/test/out/alpha-cats.out +++ b/test/out/alpha-cats.out @@ -1,6 +1,6 @@ - TEST alpha(ncats) = 0.10( 1) + TEST alpha(ncats) = 0.10( 1), mode = MEAN 1.000000 [0] P-matrix for branch length 0.100000 @@ -36,7 +36,79 @@ [0] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] - TEST alpha(ncats) = 0.50( 1) + TEST alpha(ncats) = 0.10( 1), mode = MEDIAN + +1.000000 +[0] P-matrix for branch length 0.100000 ++0.9224 +0.0370 +0.0221 +0.0185 ++0.0278 +0.9192 +0.0093 +0.0438 ++0.0663 +0.0370 +0.8782 +0.0185 ++0.0278 +0.0876 +0.0093 +0.8754 + + +[0] P-matrix for branch length 0.200000 ++0.8538 +0.0706 +0.0403 +0.0353 ++0.0529 +0.8501 +0.0176 +0.0793 ++0.1209 +0.0706 +0.7732 +0.0353 ++0.0529 +0.1586 +0.0176 +0.7708 + + +[0] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[0] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[0] CLV 5: [ {(0.06277,0.11243,0.01102,0.13066)} {(0.72901,0.00280,0.01461,0.00280)} {(0.06027,0.04501,0.00853,0.00840)} {(0.00498,0.72266,0.00498,0.02516)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00249,0.06742,0.00249,0.12226)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00284,0.01500,0.05459,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.06027,0.04501,0.00853,0.00840)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00125,0.00629,0.00125,0.59411)} ] +[0] CLV 6: [ {(0.05526,0.00587,0.00247,0.00668)} {(0.02711,0.00041,0.04740,0.00041)} {(0.05761,0.04349,0.01331,0.01305)} {(0.00225,0.56577,0.00225,0.01357)} {(0.02880,0.00652,0.00665,0.03697)} {(0.00025,0.00535,0.00025,0.08712)} {(0.00059,0.00010,0.40611,0.00010)} {(0.00225,0.56577,0.00225,0.01357)} {(0.01059,0.00169,0.00150,0.02757)} {(0.02711,0.00041,0.04740,0.00041)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.04750,0.01961,0.00433,0.00366)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00031,0.01232,0.00344,0.00069)} {(0.00044,0.00253,0.00044,0.40131)} {(0.04919,0.00230,0.00161,0.00069)} {(0.00203,0.00555,0.00047,0.00586)} {(0.00044,0.00253,0.00044,0.40131)} ] +[0] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] + + + TEST alpha(ncats) = 0.50( 1), mode = MEAN + +1.000000 +[1] P-matrix for branch length 0.100000 ++0.9224 +0.0370 +0.0221 +0.0185 ++0.0278 +0.9192 +0.0093 +0.0438 ++0.0663 +0.0370 +0.8782 +0.0185 ++0.0278 +0.0876 +0.0093 +0.8754 + + +[1] P-matrix for branch length 0.200000 ++0.8538 +0.0706 +0.0403 +0.0353 ++0.0529 +0.8501 +0.0176 +0.0793 ++0.1209 +0.0706 +0.7732 +0.0353 ++0.0529 +0.1586 +0.0176 +0.7708 + + +[1] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[1] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[1] CLV 5: [ {(0.06277,0.11243,0.01102,0.13066)} {(0.72901,0.00280,0.01461,0.00280)} {(0.06027,0.04501,0.00853,0.00840)} {(0.00498,0.72266,0.00498,0.02516)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00249,0.06742,0.00249,0.12226)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00284,0.01500,0.05459,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.06027,0.04501,0.00853,0.00840)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00125,0.00629,0.00125,0.59411)} ] +[1] CLV 6: [ {(0.05526,0.00587,0.00247,0.00668)} {(0.02711,0.00041,0.04740,0.00041)} {(0.05761,0.04349,0.01331,0.01305)} {(0.00225,0.56577,0.00225,0.01357)} {(0.02880,0.00652,0.00665,0.03697)} {(0.00025,0.00535,0.00025,0.08712)} {(0.00059,0.00010,0.40611,0.00010)} {(0.00225,0.56577,0.00225,0.01357)} {(0.01059,0.00169,0.00150,0.02757)} {(0.02711,0.00041,0.04740,0.00041)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.04750,0.01961,0.00433,0.00366)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00031,0.01232,0.00344,0.00069)} {(0.00044,0.00253,0.00044,0.40131)} {(0.04919,0.00230,0.00161,0.00069)} {(0.00203,0.00555,0.00047,0.00586)} {(0.00044,0.00253,0.00044,0.40131)} ] +[1] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] + + + TEST alpha(ncats) = 0.50( 1), mode = MEDIAN 1.000000 [1] P-matrix for branch length 0.100000 @@ -72,7 +144,43 @@ [1] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] - TEST alpha(ncats) = 0.75( 1) + TEST alpha(ncats) = 0.75( 1), mode = MEAN + +1.000000 +[2] P-matrix for branch length 0.100000 ++0.9224 +0.0370 +0.0221 +0.0185 ++0.0278 +0.9192 +0.0093 +0.0438 ++0.0663 +0.0370 +0.8782 +0.0185 ++0.0278 +0.0876 +0.0093 +0.8754 + + +[2] P-matrix for branch length 0.200000 ++0.8538 +0.0706 +0.0403 +0.0353 ++0.0529 +0.8501 +0.0176 +0.0793 ++0.1209 +0.0706 +0.7732 +0.0353 ++0.0529 +0.1586 +0.0176 +0.7708 + + +[2] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[2] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[2] CLV 5: [ {(0.06277,0.11243,0.01102,0.13066)} {(0.72901,0.00280,0.01461,0.00280)} {(0.06027,0.04501,0.00853,0.00840)} {(0.00498,0.72266,0.00498,0.02516)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00249,0.06742,0.00249,0.12226)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00284,0.01500,0.05459,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.06027,0.04501,0.00853,0.00840)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00125,0.00629,0.00125,0.59411)} ] +[2] CLV 6: [ {(0.05526,0.00587,0.00247,0.00668)} {(0.02711,0.00041,0.04740,0.00041)} {(0.05761,0.04349,0.01331,0.01305)} {(0.00225,0.56577,0.00225,0.01357)} {(0.02880,0.00652,0.00665,0.03697)} {(0.00025,0.00535,0.00025,0.08712)} {(0.00059,0.00010,0.40611,0.00010)} {(0.00225,0.56577,0.00225,0.01357)} {(0.01059,0.00169,0.00150,0.02757)} {(0.02711,0.00041,0.04740,0.00041)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.04750,0.01961,0.00433,0.00366)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00031,0.01232,0.00344,0.00069)} {(0.00044,0.00253,0.00044,0.40131)} {(0.04919,0.00230,0.00161,0.00069)} {(0.00203,0.00555,0.00047,0.00586)} {(0.00044,0.00253,0.00044,0.40131)} ] +[2] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] + + + TEST alpha(ncats) = 0.75( 1), mode = MEDIAN 1.000000 [2] P-matrix for branch length 0.100000 @@ -108,7 +216,43 @@ [2] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] - TEST alpha(ncats) = 1.00( 1) + TEST alpha(ncats) = 1.00( 1), mode = MEAN + +1.000000 +[3] P-matrix for branch length 0.100000 ++0.9224 +0.0370 +0.0221 +0.0185 ++0.0278 +0.9192 +0.0093 +0.0438 ++0.0663 +0.0370 +0.8782 +0.0185 ++0.0278 +0.0876 +0.0093 +0.8754 + + +[3] P-matrix for branch length 0.200000 ++0.8538 +0.0706 +0.0403 +0.0353 ++0.0529 +0.8501 +0.0176 +0.0793 ++0.1209 +0.0706 +0.7732 +0.0353 ++0.0529 +0.1586 +0.0176 +0.7708 + + +[3] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[3] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[3] CLV 5: [ {(0.06277,0.11243,0.01102,0.13066)} {(0.72901,0.00280,0.01461,0.00280)} {(0.06027,0.04501,0.00853,0.00840)} {(0.00498,0.72266,0.00498,0.02516)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00249,0.06742,0.00249,0.12226)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00284,0.01500,0.05459,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.06027,0.04501,0.00853,0.00840)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00125,0.00629,0.00125,0.59411)} ] +[3] CLV 6: [ {(0.05526,0.00587,0.00247,0.00668)} {(0.02711,0.00041,0.04740,0.00041)} {(0.05761,0.04349,0.01331,0.01305)} {(0.00225,0.56577,0.00225,0.01357)} {(0.02880,0.00652,0.00665,0.03697)} {(0.00025,0.00535,0.00025,0.08712)} {(0.00059,0.00010,0.40611,0.00010)} {(0.00225,0.56577,0.00225,0.01357)} {(0.01059,0.00169,0.00150,0.02757)} {(0.02711,0.00041,0.04740,0.00041)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.04750,0.01961,0.00433,0.00366)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00031,0.01232,0.00344,0.00069)} {(0.00044,0.00253,0.00044,0.40131)} {(0.04919,0.00230,0.00161,0.00069)} {(0.00203,0.00555,0.00047,0.00586)} {(0.00044,0.00253,0.00044,0.40131)} ] +[3] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] + + + TEST alpha(ncats) = 1.00( 1), mode = MEDIAN 1.000000 [3] P-matrix for branch length 0.100000 @@ -144,7 +288,43 @@ [3] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] - TEST alpha(ncats) = 1.50( 1) + TEST alpha(ncats) = 1.50( 1), mode = MEAN + +1.000000 +[4] P-matrix for branch length 0.100000 ++0.9224 +0.0370 +0.0221 +0.0185 ++0.0278 +0.9192 +0.0093 +0.0438 ++0.0663 +0.0370 +0.8782 +0.0185 ++0.0278 +0.0876 +0.0093 +0.8754 + + +[4] P-matrix for branch length 0.200000 ++0.8538 +0.0706 +0.0403 +0.0353 ++0.0529 +0.8501 +0.0176 +0.0793 ++0.1209 +0.0706 +0.7732 +0.0353 ++0.0529 +0.1586 +0.0176 +0.7708 + + +[4] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[4] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[4] CLV 5: [ {(0.06277,0.11243,0.01102,0.13066)} {(0.72901,0.00280,0.01461,0.00280)} {(0.06027,0.04501,0.00853,0.00840)} {(0.00498,0.72266,0.00498,0.02516)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00249,0.06742,0.00249,0.12226)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00284,0.01500,0.05459,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.06027,0.04501,0.00853,0.00840)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00125,0.00629,0.00125,0.59411)} ] +[4] CLV 6: [ {(0.05526,0.00587,0.00247,0.00668)} {(0.02711,0.00041,0.04740,0.00041)} {(0.05761,0.04349,0.01331,0.01305)} {(0.00225,0.56577,0.00225,0.01357)} {(0.02880,0.00652,0.00665,0.03697)} {(0.00025,0.00535,0.00025,0.08712)} {(0.00059,0.00010,0.40611,0.00010)} {(0.00225,0.56577,0.00225,0.01357)} {(0.01059,0.00169,0.00150,0.02757)} {(0.02711,0.00041,0.04740,0.00041)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.04750,0.01961,0.00433,0.00366)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00031,0.01232,0.00344,0.00069)} {(0.00044,0.00253,0.00044,0.40131)} {(0.04919,0.00230,0.00161,0.00069)} {(0.00203,0.00555,0.00047,0.00586)} {(0.00044,0.00253,0.00044,0.40131)} ] +[4] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] + + + TEST alpha(ncats) = 1.50( 1), mode = MEDIAN 1.000000 [4] P-matrix for branch length 0.100000 @@ -180,7 +360,43 @@ [4] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] - TEST alpha(ncats) = 5.00( 1) + TEST alpha(ncats) = 5.00( 1), mode = MEAN + +1.000000 +[5] P-matrix for branch length 0.100000 ++0.9224 +0.0370 +0.0221 +0.0185 ++0.0278 +0.9192 +0.0093 +0.0438 ++0.0663 +0.0370 +0.8782 +0.0185 ++0.0278 +0.0876 +0.0093 +0.8754 + + +[5] P-matrix for branch length 0.200000 ++0.8538 +0.0706 +0.0403 +0.0353 ++0.0529 +0.8501 +0.0176 +0.0793 ++0.1209 +0.0706 +0.7732 +0.0353 ++0.0529 +0.1586 +0.0176 +0.7708 + + +[5] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[5] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[5] CLV 5: [ {(0.06277,0.11243,0.01102,0.13066)} {(0.72901,0.00280,0.01461,0.00280)} {(0.06027,0.04501,0.00853,0.00840)} {(0.00498,0.72266,0.00498,0.02516)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00249,0.06742,0.00249,0.12226)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00284,0.01500,0.05459,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.06027,0.04501,0.00853,0.00840)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00125,0.00629,0.00125,0.59411)} ] +[5] CLV 6: [ {(0.05526,0.00587,0.00247,0.00668)} {(0.02711,0.00041,0.04740,0.00041)} {(0.05761,0.04349,0.01331,0.01305)} {(0.00225,0.56577,0.00225,0.01357)} {(0.02880,0.00652,0.00665,0.03697)} {(0.00025,0.00535,0.00025,0.08712)} {(0.00059,0.00010,0.40611,0.00010)} {(0.00225,0.56577,0.00225,0.01357)} {(0.01059,0.00169,0.00150,0.02757)} {(0.02711,0.00041,0.04740,0.00041)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.04750,0.01961,0.00433,0.00366)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00031,0.01232,0.00344,0.00069)} {(0.00044,0.00253,0.00044,0.40131)} {(0.04919,0.00230,0.00161,0.00069)} {(0.00203,0.00555,0.00047,0.00586)} {(0.00044,0.00253,0.00044,0.40131)} ] +[5] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] + + + TEST alpha(ncats) = 5.00( 1), mode = MEDIAN 1.000000 [5] P-matrix for branch length 0.100000 @@ -216,7 +432,7 @@ [5] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] - TEST alpha(ncats) = 10.00( 1) + TEST alpha(ncats) = 10.00( 1), mode = MEAN 1.000000 [6] P-matrix for branch length 0.100000 @@ -252,90 +468,254 @@ [6] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] - TEST alpha(ncats) = 50.00( 1) + TEST alpha(ncats) = 10.00( 1), mode = MEDIAN 1.000000 -[7] P-matrix for branch length 0.100000 +[6] P-matrix for branch length 0.100000 +0.9224 +0.0370 +0.0221 +0.0185 +0.0278 +0.9192 +0.0093 +0.0438 +0.0663 +0.0370 +0.8782 +0.0185 +0.0278 +0.0876 +0.0093 +0.8754 -[7] P-matrix for branch length 0.200000 +[6] P-matrix for branch length 0.200000 +0.8538 +0.0706 +0.0403 +0.0353 +0.0529 +0.8501 +0.0176 +0.0793 +0.1209 +0.0706 +0.7732 +0.0353 +0.0529 +0.1586 +0.0176 +0.7708 -[7] P-matrix for branch length 1.000000 +[6] P-matrix for branch length 1.000000 +0.5233 +0.2485 +0.1039 +0.1242 +0.1864 +0.5537 +0.0621 +0.1978 +0.3118 +0.2485 +0.3155 +0.1242 +0.1864 +0.3956 +0.0621 +0.3559 -[7] P-matrix for branch length 1.000000 +[6] P-matrix for branch length 1.000000 +0.5233 +0.2485 +0.1039 +0.1242 +0.1864 +0.5537 +0.0621 +0.1978 +0.3118 +0.2485 +0.3155 +0.1242 +0.1864 +0.3956 +0.0621 +0.3559 -[7] CLV 5: [ {(0.06277,0.11243,0.01102,0.13066)} {(0.72901,0.00280,0.01461,0.00280)} {(0.06027,0.04501,0.00853,0.00840)} {(0.00498,0.72266,0.00498,0.02516)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00249,0.06742,0.00249,0.12226)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00284,0.01500,0.05459,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.06027,0.04501,0.00853,0.00840)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00125,0.00629,0.00125,0.59411)} ] -[7] CLV 6: [ {(0.05526,0.00587,0.00247,0.00668)} {(0.02711,0.00041,0.04740,0.00041)} {(0.05761,0.04349,0.01331,0.01305)} {(0.00225,0.56577,0.00225,0.01357)} {(0.02880,0.00652,0.00665,0.03697)} {(0.00025,0.00535,0.00025,0.08712)} {(0.00059,0.00010,0.40611,0.00010)} {(0.00225,0.56577,0.00225,0.01357)} {(0.01059,0.00169,0.00150,0.02757)} {(0.02711,0.00041,0.04740,0.00041)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.04750,0.01961,0.00433,0.00366)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00031,0.01232,0.00344,0.00069)} {(0.00044,0.00253,0.00044,0.40131)} {(0.04919,0.00230,0.00161,0.00069)} {(0.00203,0.00555,0.00047,0.00586)} {(0.00044,0.00253,0.00044,0.40131)} ] -[7] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] +[6] CLV 5: [ {(0.06277,0.11243,0.01102,0.13066)} {(0.72901,0.00280,0.01461,0.00280)} {(0.06027,0.04501,0.00853,0.00840)} {(0.00498,0.72266,0.00498,0.02516)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00249,0.06742,0.00249,0.12226)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00284,0.01500,0.05459,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.06027,0.04501,0.00853,0.00840)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00125,0.00629,0.00125,0.59411)} ] +[6] CLV 6: [ {(0.05526,0.00587,0.00247,0.00668)} {(0.02711,0.00041,0.04740,0.00041)} {(0.05761,0.04349,0.01331,0.01305)} {(0.00225,0.56577,0.00225,0.01357)} {(0.02880,0.00652,0.00665,0.03697)} {(0.00025,0.00535,0.00025,0.08712)} {(0.00059,0.00010,0.40611,0.00010)} {(0.00225,0.56577,0.00225,0.01357)} {(0.01059,0.00169,0.00150,0.02757)} {(0.02711,0.00041,0.04740,0.00041)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.04750,0.01961,0.00433,0.00366)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00031,0.01232,0.00344,0.00069)} {(0.00044,0.00253,0.00044,0.40131)} {(0.04919,0.00230,0.00161,0.00069)} {(0.00203,0.00555,0.00047,0.00586)} {(0.00044,0.00253,0.00044,0.40131)} ] +[6] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] - TEST alpha(ncats) = 100.00( 1) + TEST alpha(ncats) = 50.00( 1), mode = MEAN 1.000000 -[8] P-matrix for branch length 0.100000 +[7] P-matrix for branch length 0.100000 +0.9224 +0.0370 +0.0221 +0.0185 +0.0278 +0.9192 +0.0093 +0.0438 +0.0663 +0.0370 +0.8782 +0.0185 +0.0278 +0.0876 +0.0093 +0.8754 -[8] P-matrix for branch length 0.200000 +[7] P-matrix for branch length 0.200000 +0.8538 +0.0706 +0.0403 +0.0353 +0.0529 +0.8501 +0.0176 +0.0793 +0.1209 +0.0706 +0.7732 +0.0353 +0.0529 +0.1586 +0.0176 +0.7708 -[8] P-matrix for branch length 1.000000 +[7] P-matrix for branch length 1.000000 +0.5233 +0.2485 +0.1039 +0.1242 +0.1864 +0.5537 +0.0621 +0.1978 +0.3118 +0.2485 +0.3155 +0.1242 +0.1864 +0.3956 +0.0621 +0.3559 -[8] P-matrix for branch length 1.000000 +[7] P-matrix for branch length 1.000000 +0.5233 +0.2485 +0.1039 +0.1242 +0.1864 +0.5537 +0.0621 +0.1978 +0.3118 +0.2485 +0.3155 +0.1242 +0.1864 +0.3956 +0.0621 +0.3559 -[8] CLV 5: [ {(0.06277,0.11243,0.01102,0.13066)} {(0.72901,0.00280,0.01461,0.00280)} {(0.06027,0.04501,0.00853,0.00840)} {(0.00498,0.72266,0.00498,0.02516)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00249,0.06742,0.00249,0.12226)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00284,0.01500,0.05459,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.06027,0.04501,0.00853,0.00840)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00125,0.00629,0.00125,0.59411)} ] -[8] CLV 6: [ {(0.05526,0.00587,0.00247,0.00668)} {(0.02711,0.00041,0.04740,0.00041)} {(0.05761,0.04349,0.01331,0.01305)} {(0.00225,0.56577,0.00225,0.01357)} {(0.02880,0.00652,0.00665,0.03697)} {(0.00025,0.00535,0.00025,0.08712)} {(0.00059,0.00010,0.40611,0.00010)} {(0.00225,0.56577,0.00225,0.01357)} {(0.01059,0.00169,0.00150,0.02757)} {(0.02711,0.00041,0.04740,0.00041)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.04750,0.01961,0.00433,0.00366)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00031,0.01232,0.00344,0.00069)} {(0.00044,0.00253,0.00044,0.40131)} {(0.04919,0.00230,0.00161,0.00069)} {(0.00203,0.00555,0.00047,0.00586)} {(0.00044,0.00253,0.00044,0.40131)} ] -[8] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] +[7] CLV 5: [ {(0.06277,0.11243,0.01102,0.13066)} {(0.72901,0.00280,0.01461,0.00280)} {(0.06027,0.04501,0.00853,0.00840)} {(0.00498,0.72266,0.00498,0.02516)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00249,0.06742,0.00249,0.12226)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00284,0.01500,0.05459,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.06027,0.04501,0.00853,0.00840)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00125,0.00629,0.00125,0.59411)} ] +[7] CLV 6: [ {(0.05526,0.00587,0.00247,0.00668)} {(0.02711,0.00041,0.04740,0.00041)} {(0.05761,0.04349,0.01331,0.01305)} {(0.00225,0.56577,0.00225,0.01357)} {(0.02880,0.00652,0.00665,0.03697)} {(0.00025,0.00535,0.00025,0.08712)} {(0.00059,0.00010,0.40611,0.00010)} {(0.00225,0.56577,0.00225,0.01357)} {(0.01059,0.00169,0.00150,0.02757)} {(0.02711,0.00041,0.04740,0.00041)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.04750,0.01961,0.00433,0.00366)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00031,0.01232,0.00344,0.00069)} {(0.00044,0.00253,0.00044,0.40131)} {(0.04919,0.00230,0.00161,0.00069)} {(0.00203,0.00555,0.00047,0.00586)} {(0.00044,0.00253,0.00044,0.40131)} ] +[7] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] - TEST alpha(ncats) = 0.10( 2) + TEST alpha(ncats) = 50.00( 1), mode = MEDIAN -0.000539 1.999461 -[0] P-matrix for branch length 0.100000 -+1.0000 +0.0000 +0.0000 +0.0000 -+0.0000 +1.0000 +0.0000 +0.0000 -+0.0000 +0.0000 +0.9999 +0.0000 -+0.0000 +0.0001 +0.0000 +0.9999 +1.000000 +[7] P-matrix for branch length 0.100000 ++0.9224 +0.0370 +0.0221 +0.0185 ++0.0278 +0.9192 +0.0093 +0.0438 ++0.0663 +0.0370 +0.8782 +0.0185 ++0.0278 +0.0876 +0.0093 +0.8754 -+0.8539 +0.0706 +0.0403 +0.0353 + +[7] P-matrix for branch length 0.200000 ++0.8538 +0.0706 +0.0403 +0.0353 +0.0529 +0.8501 +0.0176 +0.0793 -+0.1208 +0.0706 +0.7733 +0.0353 ++0.1209 +0.0706 +0.7732 +0.0353 ++0.0529 +0.1586 +0.0176 +0.7708 + + +[7] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[7] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[7] CLV 5: [ {(0.06277,0.11243,0.01102,0.13066)} {(0.72901,0.00280,0.01461,0.00280)} {(0.06027,0.04501,0.00853,0.00840)} {(0.00498,0.72266,0.00498,0.02516)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00249,0.06742,0.00249,0.12226)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00284,0.01500,0.05459,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.06027,0.04501,0.00853,0.00840)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00125,0.00629,0.00125,0.59411)} ] +[7] CLV 6: [ {(0.05526,0.00587,0.00247,0.00668)} {(0.02711,0.00041,0.04740,0.00041)} {(0.05761,0.04349,0.01331,0.01305)} {(0.00225,0.56577,0.00225,0.01357)} {(0.02880,0.00652,0.00665,0.03697)} {(0.00025,0.00535,0.00025,0.08712)} {(0.00059,0.00010,0.40611,0.00010)} {(0.00225,0.56577,0.00225,0.01357)} {(0.01059,0.00169,0.00150,0.02757)} {(0.02711,0.00041,0.04740,0.00041)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.04750,0.01961,0.00433,0.00366)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00031,0.01232,0.00344,0.00069)} {(0.00044,0.00253,0.00044,0.40131)} {(0.04919,0.00230,0.00161,0.00069)} {(0.00203,0.00555,0.00047,0.00586)} {(0.00044,0.00253,0.00044,0.40131)} ] +[7] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] + + + TEST alpha(ncats) = 100.00( 1), mode = MEAN + +1.000000 +[8] P-matrix for branch length 0.100000 ++0.9224 +0.0370 +0.0221 +0.0185 ++0.0278 +0.9192 +0.0093 +0.0438 ++0.0663 +0.0370 +0.8782 +0.0185 ++0.0278 +0.0876 +0.0093 +0.8754 + + +[8] P-matrix for branch length 0.200000 ++0.8538 +0.0706 +0.0403 +0.0353 ++0.0529 +0.8501 +0.0176 +0.0793 ++0.1209 +0.0706 +0.7732 +0.0353 ++0.0529 +0.1586 +0.0176 +0.7708 + + +[8] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[8] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[8] CLV 5: [ {(0.06277,0.11243,0.01102,0.13066)} {(0.72901,0.00280,0.01461,0.00280)} {(0.06027,0.04501,0.00853,0.00840)} {(0.00498,0.72266,0.00498,0.02516)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00249,0.06742,0.00249,0.12226)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00284,0.01500,0.05459,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.06027,0.04501,0.00853,0.00840)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00125,0.00629,0.00125,0.59411)} ] +[8] CLV 6: [ {(0.05526,0.00587,0.00247,0.00668)} {(0.02711,0.00041,0.04740,0.00041)} {(0.05761,0.04349,0.01331,0.01305)} {(0.00225,0.56577,0.00225,0.01357)} {(0.02880,0.00652,0.00665,0.03697)} {(0.00025,0.00535,0.00025,0.08712)} {(0.00059,0.00010,0.40611,0.00010)} {(0.00225,0.56577,0.00225,0.01357)} {(0.01059,0.00169,0.00150,0.02757)} {(0.02711,0.00041,0.04740,0.00041)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.04750,0.01961,0.00433,0.00366)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00031,0.01232,0.00344,0.00069)} {(0.00044,0.00253,0.00044,0.40131)} {(0.04919,0.00230,0.00161,0.00069)} {(0.00203,0.00555,0.00047,0.00586)} {(0.00044,0.00253,0.00044,0.40131)} ] +[8] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] + + + TEST alpha(ncats) = 100.00( 1), mode = MEDIAN + +1.000000 +[8] P-matrix for branch length 0.100000 ++0.9224 +0.0370 +0.0221 +0.0185 ++0.0278 +0.9192 +0.0093 +0.0438 ++0.0663 +0.0370 +0.8782 +0.0185 ++0.0278 +0.0876 +0.0093 +0.8754 + + +[8] P-matrix for branch length 0.200000 ++0.8538 +0.0706 +0.0403 +0.0353 ++0.0529 +0.8501 +0.0176 +0.0793 ++0.1209 +0.0706 +0.7732 +0.0353 ++0.0529 +0.1586 +0.0176 +0.7708 + + +[8] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[8] P-matrix for branch length 1.000000 ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[8] CLV 5: [ {(0.06277,0.11243,0.01102,0.13066)} {(0.72901,0.00280,0.01461,0.00280)} {(0.06027,0.04501,0.00853,0.00840)} {(0.00498,0.72266,0.00498,0.02516)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00249,0.06742,0.00249,0.12226)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00284,0.01500,0.05459,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(0.06027,0.04501,0.00853,0.00840)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00125,0.00629,0.00125,0.59411)} ] +[8] CLV 6: [ {(0.05526,0.00587,0.00247,0.00668)} {(0.02711,0.00041,0.04740,0.00041)} {(0.05761,0.04349,0.01331,0.01305)} {(0.00225,0.56577,0.00225,0.01357)} {(0.02880,0.00652,0.00665,0.03697)} {(0.00025,0.00535,0.00025,0.08712)} {(0.00059,0.00010,0.40611,0.00010)} {(0.00225,0.56577,0.00225,0.01357)} {(0.01059,0.00169,0.00150,0.02757)} {(0.02711,0.00041,0.04740,0.00041)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.04750,0.01961,0.00433,0.00366)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00044,0.00253,0.00044,0.40131)} {(0.00031,0.01232,0.00344,0.00069)} {(0.00044,0.00253,0.00044,0.40131)} {(0.04919,0.00230,0.00161,0.00069)} {(0.00203,0.00555,0.00047,0.00586)} {(0.00044,0.00253,0.00044,0.40131)} ] +[8] CLV 7: [ {(0.00498,0.72266,0.00498,0.02516)} {(0.00162,0.00031,0.59790,0.00031)} {(0.03014,0.00420,0.00427,0.04081)} {(0.00498,0.72266,0.00498,0.02516)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00125,0.00629,0.00125,0.59411)} {(0.00162,0.00031,0.59790,0.00031)} {(0.00498,0.72266,0.00498,0.02516)} {(0.06027,0.04501,0.00853,0.00840)} {(0.72901,0.00280,0.01461,0.00280)} {(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00125,0.00629,0.00125,0.59411)} {(1.00000,1.00000,1.00000,1.00000)} {(0.00249,0.06742,0.00249,0.12226)} {(1.00000,1.00000,1.00000,1.00000)} {(0.72901,0.00280,0.01461,0.00280)} {(0.72901,0.00280,0.01461,0.00280)} {(0.00162,0.00031,0.59790,0.00031)} ] + + + TEST alpha(ncats) = 0.10( 2), mode = MEAN + +0.000033 1.999967 +[0] P-matrix for branch length 0.100000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++0.8538 +0.0706 +0.0403 +0.0353 ++0.0529 +0.8501 +0.0176 +0.0793 ++0.1209 +0.0706 +0.7732 +0.0353 ++0.0529 +0.1586 +0.0176 +0.7708 + + +[0] P-matrix for branch length 0.200000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++0.7395 +0.1287 +0.0674 +0.0644 ++0.0965 +0.7402 +0.0322 +0.1310 ++0.2023 +0.1287 +0.6046 +0.0644 ++0.0965 +0.2621 +0.0322 +0.6092 + + +[0] P-matrix for branch length 1.000000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++0.3757 +0.3426 +0.1103 +0.1713 ++0.2570 +0.4466 +0.0857 +0.2108 ++0.3310 +0.3426 +0.1551 +0.1713 ++0.2570 +0.4216 +0.0857 +0.2358 + + +[0] P-matrix for branch length 1.000000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++0.3757 +0.3426 +0.1103 +0.1713 ++0.2570 +0.4466 +0.0857 +0.2108 ++0.3310 +0.3426 +0.1551 +0.1713 ++0.2570 +0.4216 +0.0857 +0.2358 + + +[0] CLV 5: [ {(0.00000,0.00001,0.00000,0.00001),(0.10348,0.16847,0.03432,0.18496)} {(0.99999,0.00000,0.00000,0.00000),(0.54684,0.00932,0.04091,0.00932)} {(0.00000,0.00000,0.00000,0.00000),(0.09519,0.07147,0.02604,0.02530)} {(0.00000,0.99999,0.00000,0.00000),(0.01657,0.54794,0.01657,0.06869)} {(0.00000,0.00000,0.00000,0.00000),(0.04760,0.01265,0.01302,0.05881)} {(0.00000,0.00000,0.00000,0.00001),(0.00829,0.09700,0.00829,0.15966)} {(0.00000,0.00000,0.99998,0.00000),(0.00455,0.00104,0.36559,0.00104)} {(0.00000,0.99999,0.00000,0.00000),(0.01657,0.54794,0.01657,0.06869)} {(0.00000,0.00000,0.00000,0.99998),(0.00414,0.01717,0.00414,0.37110)} {(0.99999,0.00000,0.00000,0.00000),(0.54684,0.00932,0.04091,0.00932)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99999,0.00000,0.00000,0.00000),(0.54684,0.00932,0.04091,0.00932)} {(0.00000,0.00000,0.00000,0.99998),(0.00414,0.01717,0.00414,0.37110)} {(0.00000,0.00000,0.00000,0.99998),(0.00414,0.01717,0.00414,0.37110)} {(0.00000,0.00000,0.00000,0.00000),(0.00868,0.02382,0.07783,0.00843)} {(0.00000,0.00000,0.00000,0.99998),(0.00414,0.01717,0.00414,0.37110)} {(0.00000,0.00000,0.00000,0.00000),(0.09519,0.07147,0.02604,0.02530)} {(0.00000,0.00000,0.00000,0.00000),(0.04760,0.01265,0.01302,0.05881)} {(0.00000,0.00000,0.00000,0.99998),(0.00414,0.01717,0.00414,0.37110)} ] +[0] CLV 6: [ {(0.00000,0.00000,0.00000,0.00000),(0.07998,0.01583,0.01162,0.01693)} {(0.00000,0.00000,0.00000,0.00000),(0.03166,0.00123,0.05969,0.00123)} {(0.00000,0.00000,0.00000,0.00000),(0.08826,0.06826,0.03758,0.03634)} {(0.00000,0.99998,0.00000,0.00000),(0.00720,0.34970,0.00720,0.03696)} {(0.00000,0.00000,0.00000,0.00000),(0.04413,0.01817,0.01879,0.05009)} {(0.00000,0.00000,0.00000,0.00001),(0.00128,0.01254,0.00128,0.08470)} {(0.00000,0.00000,0.99997,0.00000),(0.00126,0.00025,0.17132,0.00025)} {(0.00000,0.99998,0.00000,0.00000),(0.00720,0.34970,0.00720,0.03696)} {(0.00000,0.00000,0.00000,0.00000),(0.01332,0.00428,0.00364,0.02791)} {(0.00000,0.00000,0.00000,0.00000),(0.03166,0.00123,0.05969,0.00123)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00000,0.00000,0.00000),(0.06044,0.02838,0.01271,0.01005)} {(0.00000,0.00000,0.00000,0.99997),(0.00116,0.00581,0.00116,0.17609)} {(0.00000,0.00000,0.00000,0.99997),(0.00116,0.00581,0.00116,0.17609)} {(0.00000,0.00000,0.00000,0.00000),(0.00161,0.01684,0.00814,0.00317)} {(0.00000,0.00000,0.00000,0.99997),(0.00116,0.00581,0.00116,0.17609)} {(0.00000,0.00000,0.00000,0.00000),(0.06527,0.00659,0.00760,0.00351)} {(0.00000,0.00000,0.00000,0.00000),(0.00568,0.01345,0.00242,0.01313)} {(0.00000,0.00000,0.00000,0.99997),(0.00116,0.00581,0.00116,0.17609)} ] +[0] CLV 7: [ {(0.00000,0.99999,0.00000,0.00000),(0.01657,0.54794,0.01657,0.06869)} {(0.00000,0.00000,0.99998,0.00000),(0.00455,0.00104,0.36559,0.00104)} {(0.00000,0.00000,0.00000,0.00000),(0.04760,0.01265,0.01302,0.05881)} {(0.00000,0.99999,0.00000,0.00000),(0.01657,0.54794,0.01657,0.06869)} {(0.00000,0.00000,0.00000,0.99998),(0.00414,0.01717,0.00414,0.37110)} {(0.00000,0.00000,0.00000,0.99998),(0.00414,0.01717,0.00414,0.37110)} {(0.00000,0.00000,0.99998,0.00000),(0.00455,0.00104,0.36559,0.00104)} {(0.00000,0.99999,0.00000,0.00000),(0.01657,0.54794,0.01657,0.06869)} {(0.00000,0.00000,0.00000,0.00000),(0.09519,0.07147,0.02604,0.02530)} {(0.99999,0.00000,0.00000,0.00000),(0.54684,0.00932,0.04091,0.00932)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99999,0.00000,0.00000,0.00000),(0.54684,0.00932,0.04091,0.00932)} {(0.00000,0.00000,0.00000,0.99998),(0.00414,0.01717,0.00414,0.37110)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00000,0.00000,0.00001),(0.00829,0.09700,0.00829,0.15966)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99999,0.00000,0.00000,0.00000),(0.54684,0.00932,0.04091,0.00932)} {(0.99999,0.00000,0.00000,0.00000),(0.54684,0.00932,0.04091,0.00932)} {(0.00000,0.00000,0.99998,0.00000),(0.00455,0.00104,0.36559,0.00104)} ] + + + TEST alpha(ncats) = 0.10( 2), mode = MEDIAN + +0.000539 1.999461 +[0] P-matrix for branch length 0.100000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +0.9999 +0.0000 ++0.0000 +0.0001 +0.0000 +0.9999 + ++0.8539 +0.0706 +0.0403 +0.0353 ++0.0529 +0.8501 +0.0176 +0.0793 ++0.1208 +0.0706 +0.7733 +0.0353 +0.0529 +0.1586 +0.0176 +0.7708 @@ -380,7 +760,63 @@ [0] CLV 7: [ {(0.00000,0.99981,0.00000,0.00000),(0.01656,0.54801,0.01656,0.06867)} {(0.00000,0.00000,0.99972,0.00000),(0.00454,0.00104,0.36568,0.00104)} {(0.00002,0.00000,0.00000,0.00003),(0.04759,0.01265,0.01301,0.05881)} {(0.00000,0.99981,0.00000,0.00000),(0.01656,0.54801,0.01656,0.06867)} {(0.00000,0.00000,0.00000,0.99971),(0.00414,0.01717,0.00414,0.37119)} {(0.00000,0.00000,0.00000,0.99971),(0.00414,0.01717,0.00414,0.37119)} {(0.00000,0.00000,0.99972,0.00000),(0.00454,0.00104,0.36568,0.00104)} {(0.00000,0.99981,0.00000,0.00000),(0.01656,0.54801,0.01656,0.06867)} {(0.00004,0.00003,0.00000,0.00000),(0.09518,0.07146,0.02603,0.02529)} {(0.99982,0.00000,0.00000,0.00000),(0.54691,0.00932,0.04090,0.00932)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99982,0.00000,0.00000,0.00000),(0.54691,0.00932,0.04090,0.00932)} {(0.00000,0.00000,0.00000,0.99971),(0.00414,0.01717,0.00414,0.37119)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00005,0.00000,0.00010),(0.00828,0.09699,0.00828,0.15965)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99982,0.00000,0.00000,0.00000),(0.54691,0.00932,0.04090,0.00932)} {(0.99982,0.00000,0.00000,0.00000),(0.54691,0.00932,0.04090,0.00932)} {(0.00000,0.00000,0.99972,0.00000),(0.00454,0.00104,0.36568,0.00104)} ] - TEST alpha(ncats) = 0.50( 2) + TEST alpha(ncats) = 0.50( 2), mode = MEAN + +0.142516 1.857484 +[1] P-matrix for branch length 0.100000 ++0.9883 +0.0055 +0.0034 +0.0027 ++0.0041 +0.9877 +0.0014 +0.0068 ++0.0102 +0.0055 +0.9815 +0.0027 ++0.0041 +0.0136 +0.0014 +0.9809 + ++0.8631 +0.0660 +0.0379 +0.0330 ++0.0495 +0.8593 +0.0165 +0.0747 ++0.1137 +0.0660 +0.7873 +0.0330 ++0.0495 +0.1494 +0.0165 +0.7846 + + +[1] P-matrix for branch length 0.200000 ++0.9769 +0.0109 +0.0067 +0.0055 ++0.0082 +0.9756 +0.0027 +0.0134 ++0.0202 +0.0109 +0.9634 +0.0055 ++0.0082 +0.0269 +0.0027 +0.9622 + ++0.7541 +0.1211 +0.0642 +0.0606 ++0.0908 +0.7539 +0.0303 +0.1250 ++0.1926 +0.1211 +0.6257 +0.0606 ++0.0908 +0.2500 +0.0303 +0.6289 + + +[1] P-matrix for branch length 1.000000 ++0.8922 +0.0517 +0.0303 +0.0258 ++0.0388 +0.8885 +0.0129 +0.0598 ++0.0908 +0.0517 +0.8317 +0.0258 ++0.0388 +0.1197 +0.0129 +0.8287 + ++0.3881 +0.3341 +0.1108 +0.1671 ++0.2506 +0.4548 +0.0835 +0.2111 ++0.3323 +0.3341 +0.1666 +0.1671 ++0.2506 +0.4223 +0.0835 +0.2436 + + +[1] P-matrix for branch length 1.000000 ++0.8922 +0.0517 +0.0303 +0.0258 ++0.0388 +0.8885 +0.0129 +0.0598 ++0.0908 +0.0517 +0.8317 +0.0258 ++0.0388 +0.1197 +0.0129 +0.8287 + ++0.3881 +0.3341 +0.1108 +0.1671 ++0.2506 +0.4548 +0.0835 +0.2111 ++0.3323 +0.3341 +0.1666 +0.1671 ++0.2506 +0.4223 +0.0835 +0.2436 + + +[1] CLV 5: [ {(0.01072,0.02110,0.00028,0.02607),(0.09867,0.16271,0.03066,0.17991)} {(0.95431,0.00007,0.00041,0.00007),(0.56871,0.00825,0.03709,0.00825)} {(0.01067,0.00799,0.00022,0.00022),(0.09134,0.06848,0.02333,0.02271)} {(0.00012,0.95189,0.00012,0.00072),(0.01467,0.56837,0.01467,0.06248)} {(0.00533,0.00011,0.00011,0.00788),(0.04567,0.01135,0.01166,0.05713)} {(0.00006,0.01311,0.00006,0.02585),(0.00733,0.09422,0.00733,0.15720)} {(0.00005,0.00001,0.92818,0.00001),(0.00412,0.00092,0.39154,0.00092)} {(0.00012,0.95189,0.00012,0.00072),(0.01467,0.56837,0.01467,0.06248)} {(0.00003,0.00018,0.00003,0.92586),(0.00367,0.01562,0.00367,0.39555)} {(0.95431,0.00007,0.00041,0.00007),(0.56871,0.00825,0.03709,0.00825)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.95431,0.00007,0.00041,0.00007),(0.56871,0.00825,0.03709,0.00825)} {(0.00003,0.00018,0.00003,0.92586),(0.00367,0.01562,0.00367,0.39555)} {(0.00003,0.00018,0.00003,0.92586),(0.00367,0.01562,0.00367,0.39555)} {(0.00007,0.00266,0.01052,0.00007),(0.00778,0.02283,0.07579,0.00757)} {(0.00003,0.00018,0.00003,0.92586),(0.00367,0.01562,0.00367,0.39555)} {(0.01067,0.00799,0.00022,0.00022),(0.09134,0.06848,0.02333,0.02271)} {(0.00533,0.00011,0.00011,0.00788),(0.04567,0.01135,0.01166,0.05713)} {(0.00003,0.00018,0.00003,0.92586),(0.00367,0.01562,0.00367,0.39555)} ] +[1] CLV 6: [ {(0.01054,0.00017,0.00001,0.00021),(0.07768,0.01441,0.01002,0.01552)} {(0.00635,0.00001,0.00980,0.00001),(0.03165,0.00110,0.05925,0.00110)} {(0.01059,0.00794,0.00037,0.00037),(0.08499,0.06545,0.03402,0.03295)} {(0.00006,0.91728,0.00006,0.00037),(0.00639,0.37245,0.00639,0.03372)} {(0.00529,0.00018,0.00019,0.00775),(0.04249,0.01648,0.01701,0.04897)} {(0.00000,0.00018,0.00000,0.02457),(0.00109,0.01165,0.00109,0.08673)} {(0.00002,0.00000,0.87771,0.00000),(0.00119,0.00023,0.19323,0.00023)} {(0.00006,0.91728,0.00006,0.00037),(0.00639,0.37245,0.00639,0.03372)} {(0.00252,0.00005,0.00005,0.00744),(0.01311,0.00393,0.00335,0.02843)} {(0.00635,0.00001,0.00980,0.00001),(0.03165,0.00110,0.05925,0.00110)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.01030,0.00390,0.00011,0.00011),(0.05972,0.02750,0.01147,0.00912)} {(0.00001,0.00009,0.00001,0.87383),(0.00105,0.00540,0.00105,0.19680)} {(0.00001,0.00009,0.00001,0.87383),(0.00105,0.00540,0.00105,0.19680)} {(0.00000,0.00258,0.00011,0.00000),(0.00137,0.01645,0.00755,0.00275)} {(0.00001,0.00009,0.00001,0.87383),(0.00105,0.00540,0.00105,0.19680)} {(0.01034,0.00006,0.00001,0.00000),(0.06409,0.00595,0.00655,0.00299)} {(0.00006,0.00018,0.00000,0.00021),(0.00515,0.01242,0.00206,0.01224)} {(0.00001,0.00009,0.00001,0.87383),(0.00105,0.00540,0.00105,0.19680)} ] +[1] CLV 7: [ {(0.00012,0.95189,0.00012,0.00072),(0.01467,0.56837,0.01467,0.06248)} {(0.00005,0.00001,0.92818,0.00001),(0.00412,0.00092,0.39154,0.00092)} {(0.00533,0.00011,0.00011,0.00788),(0.04567,0.01135,0.01166,0.05713)} {(0.00012,0.95189,0.00012,0.00072),(0.01467,0.56837,0.01467,0.06248)} {(0.00003,0.00018,0.00003,0.92586),(0.00367,0.01562,0.00367,0.39555)} {(0.00003,0.00018,0.00003,0.92586),(0.00367,0.01562,0.00367,0.39555)} {(0.00005,0.00001,0.92818,0.00001),(0.00412,0.00092,0.39154,0.00092)} {(0.00012,0.95189,0.00012,0.00072),(0.01467,0.56837,0.01467,0.06248)} {(0.01067,0.00799,0.00022,0.00022),(0.09134,0.06848,0.02333,0.02271)} {(0.95431,0.00007,0.00041,0.00007),(0.56871,0.00825,0.03709,0.00825)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.95431,0.00007,0.00041,0.00007),(0.56871,0.00825,0.03709,0.00825)} {(0.00003,0.00018,0.00003,0.92586),(0.00367,0.01562,0.00367,0.39555)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00006,0.01311,0.00006,0.02585),(0.00733,0.09422,0.00733,0.15720)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.95431,0.00007,0.00041,0.00007),(0.56871,0.00825,0.03709,0.00825)} {(0.95431,0.00007,0.00041,0.00007),(0.56871,0.00825,0.03709,0.00825)} {(0.00005,0.00001,0.92818,0.00001),(0.00412,0.00092,0.39154,0.00092)} ] + + + TEST alpha(ncats) = 0.50( 2), mode = MEDIAN 0.142652 1.857348 [1] P-matrix for branch length 0.100000 @@ -436,7 +872,63 @@ [1] CLV 7: [ {(0.00012,0.95185,0.00012,0.00072),(0.01467,0.56839,0.01467,0.06247)} {(0.00005,0.00001,0.92812,0.00001),(0.00412,0.00092,0.39157,0.00092)} {(0.00534,0.00011,0.00011,0.00789),(0.04567,0.01135,0.01166,0.05713)} {(0.00012,0.95185,0.00012,0.00072),(0.01467,0.56839,0.01467,0.06247)} {(0.00003,0.00018,0.00003,0.92579),(0.00367,0.01562,0.00367,0.39557)} {(0.00003,0.00018,0.00003,0.92579),(0.00367,0.01562,0.00367,0.39557)} {(0.00005,0.00001,0.92812,0.00001),(0.00412,0.00092,0.39157,0.00092)} {(0.00012,0.95185,0.00012,0.00072),(0.01467,0.56839,0.01467,0.06247)} {(0.01067,0.00800,0.00022,0.00022),(0.09133,0.06848,0.02332,0.02270)} {(0.95427,0.00007,0.00041,0.00007),(0.56873,0.00825,0.03709,0.00825)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.95427,0.00007,0.00041,0.00007),(0.56873,0.00825,0.03709,0.00825)} {(0.00003,0.00018,0.00003,0.92579),(0.00367,0.01562,0.00367,0.39557)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00006,0.01312,0.00006,0.02588),(0.00733,0.09422,0.00733,0.15720)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.95427,0.00007,0.00041,0.00007),(0.56873,0.00825,0.03709,0.00825)} {(0.95427,0.00007,0.00041,0.00007),(0.56873,0.00825,0.03709,0.00825)} {(0.00005,0.00001,0.92812,0.00001),(0.00412,0.00092,0.39157,0.00092)} ] - TEST alpha(ncats) = 0.75( 2) + TEST alpha(ncats) = 0.75( 2), mode = MEAN + +0.258371 1.741629 +[2] P-matrix for branch length 0.100000 ++0.9790 +0.0099 +0.0061 +0.0050 ++0.0074 +0.9779 +0.0025 +0.0122 ++0.0184 +0.0099 +0.9668 +0.0050 ++0.0074 +0.0244 +0.0025 +0.9657 + ++0.8707 +0.0622 +0.0359 +0.0311 ++0.0467 +0.8669 +0.0156 +0.0708 ++0.1078 +0.0622 +0.7989 +0.0311 ++0.0467 +0.1417 +0.0156 +0.7961 + + +[2] P-matrix for branch length 0.200000 ++0.9587 +0.0196 +0.0119 +0.0098 ++0.0147 +0.9566 +0.0049 +0.0238 ++0.0358 +0.0196 +0.9348 +0.0098 ++0.0147 +0.0476 +0.0049 +0.9329 + ++0.7664 +0.1148 +0.0614 +0.0574 ++0.0861 +0.7655 +0.0287 +0.1198 ++0.1843 +0.1148 +0.6435 +0.0574 ++0.0861 +0.2395 +0.0287 +0.6457 + + +[2] P-matrix for branch length 1.000000 ++0.8175 +0.0887 +0.0494 +0.0444 ++0.0666 +0.8145 +0.0222 +0.0968 ++0.1481 +0.0887 +0.7188 +0.0444 ++0.0666 +0.1936 +0.0222 +0.7177 + ++0.3997 +0.3263 +0.1109 +0.1631 ++0.2447 +0.4626 +0.0816 +0.2112 ++0.3328 +0.3263 +0.1778 +0.1631 ++0.2447 +0.4223 +0.0816 +0.2514 + + +[2] P-matrix for branch length 1.000000 ++0.8175 +0.0887 +0.0494 +0.0444 ++0.0666 +0.8145 +0.0222 +0.0968 ++0.1481 +0.0887 +0.7188 +0.0444 ++0.0666 +0.1936 +0.0222 +0.7177 + ++0.3997 +0.3263 +0.1109 +0.1631 ++0.2447 +0.4626 +0.0816 +0.2112 ++0.3328 +0.3263 +0.1778 +0.1631 ++0.2447 +0.4223 +0.0816 +0.2514 + + +[2] CLV 5: [ {(0.01896,0.03679,0.00089,0.04507),(0.09455,0.15756,0.02774,0.17528)} {(0.91910,0.00022,0.00128,0.00022),(0.58738,0.00741,0.03396,0.00741)} {(0.01876,0.01404,0.00070,0.00070),(0.08796,0.06589,0.02115,0.02062)} {(0.00038,0.91517,0.00038,0.00226),(0.01317,0.58594,0.01317,0.05737)} {(0.00938,0.00035,0.00035,0.01369),(0.04398,0.01031,0.01058,0.05558)} {(0.00019,0.02275,0.00019,0.04437),(0.00659,0.09167,0.00659,0.15466)} {(0.00014,0.00002,0.87387,0.00002),(0.00377,0.00082,0.41415,0.00082)} {(0.00038,0.91517,0.00038,0.00226),(0.01317,0.58594,0.01317,0.05737)} {(0.00010,0.00057,0.00010,0.87023),(0.00329,0.01434,0.00329,0.41694)} {(0.91910,0.00022,0.00128,0.00022),(0.58738,0.00741,0.03396,0.00741)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.91910,0.00022,0.00128,0.00022),(0.58738,0.00741,0.03396,0.00741)} {(0.00010,0.00057,0.00010,0.87023),(0.00329,0.01434,0.00329,0.41694)} {(0.00010,0.00057,0.00010,0.87023),(0.00329,0.01434,0.00329,0.41694)} {(0.00023,0.00468,0.01830,0.00023),(0.00705,0.02196,0.07386,0.00687)} {(0.00010,0.00057,0.00010,0.87023),(0.00329,0.01434,0.00329,0.41694)} {(0.01876,0.01404,0.00070,0.00070),(0.08796,0.06589,0.02115,0.02062)} {(0.00938,0.00035,0.00035,0.01369),(0.04398,0.01031,0.01058,0.05558)} {(0.00010,0.00057,0.00010,0.87023),(0.00329,0.01434,0.00329,0.41694)} ] +[2] CLV 6: [ {(0.01836,0.00054,0.00006,0.00065),(0.07555,0.01324,0.00877,0.01435)} {(0.01075,0.00003,0.01694,0.00003),(0.03154,0.00100,0.05865,0.00100)} {(0.01852,0.01388,0.00117,0.00116),(0.08209,0.06302,0.03112,0.03018)} {(0.00019,0.85616,0.00019,0.00117),(0.00576,0.39257,0.00576,0.03102)} {(0.00926,0.00058,0.00058,0.01330),(0.04105,0.01509,0.01556,0.04793)} {(0.00001,0.00054,0.00001,0.04049),(0.00095,0.01088,0.00095,0.08815)} {(0.00007,0.00001,0.78977,0.00001),(0.00112,0.00021,0.21323,0.00021)} {(0.00019,0.85616,0.00019,0.00117),(0.00576,0.39257,0.00576,0.03102)} {(0.00423,0.00016,0.00016,0.01234),(0.01291,0.00363,0.00311,0.02876)} {(0.01075,0.00003,0.01694,0.00003),(0.03154,0.00100,0.05865,0.00100)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.01761,0.00674,0.00035,0.00034),(0.05892,0.02671,0.01046,0.00836)} {(0.00004,0.00027,0.00004,0.78395),(0.00097,0.00505,0.00097,0.21577)} {(0.00004,0.00027,0.00004,0.78395),(0.00097,0.00505,0.00097,0.21577)} {(0.00001,0.00443,0.00035,0.00002),(0.00119,0.01608,0.00704,0.00241)} {(0.00004,0.00027,0.00004,0.78395),(0.00097,0.00505,0.00097,0.21577)} {(0.01775,0.00020,0.00004,0.00002),(0.06292,0.00542,0.00574,0.00260)} {(0.00018,0.00055,0.00001,0.00063),(0.00471,0.01155,0.00179,0.01148)} {(0.00004,0.00027,0.00004,0.78395),(0.00097,0.00505,0.00097,0.21577)} ] +[2] CLV 7: [ {(0.00038,0.91517,0.00038,0.00226),(0.01317,0.58594,0.01317,0.05737)} {(0.00014,0.00002,0.87387,0.00002),(0.00377,0.00082,0.41415,0.00082)} {(0.00938,0.00035,0.00035,0.01369),(0.04398,0.01031,0.01058,0.05558)} {(0.00038,0.91517,0.00038,0.00226),(0.01317,0.58594,0.01317,0.05737)} {(0.00010,0.00057,0.00010,0.87023),(0.00329,0.01434,0.00329,0.41694)} {(0.00010,0.00057,0.00010,0.87023),(0.00329,0.01434,0.00329,0.41694)} {(0.00014,0.00002,0.87387,0.00002),(0.00377,0.00082,0.41415,0.00082)} {(0.00038,0.91517,0.00038,0.00226),(0.01317,0.58594,0.01317,0.05737)} {(0.01876,0.01404,0.00070,0.00070),(0.08796,0.06589,0.02115,0.02062)} {(0.91910,0.00022,0.00128,0.00022),(0.58738,0.00741,0.03396,0.00741)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.91910,0.00022,0.00128,0.00022),(0.58738,0.00741,0.03396,0.00741)} {(0.00010,0.00057,0.00010,0.87023),(0.00329,0.01434,0.00329,0.41694)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00019,0.02275,0.00019,0.04437),(0.00659,0.09167,0.00659,0.15466)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.91910,0.00022,0.00128,0.00022),(0.58738,0.00741,0.03396,0.00741)} {(0.91910,0.00022,0.00128,0.00022),(0.58738,0.00741,0.03396,0.00741)} {(0.00014,0.00002,0.87387,0.00002),(0.00377,0.00082,0.41415,0.00082)} ] + + + TEST alpha(ncats) = 0.75( 2), mode = MEDIAN 0.235541 1.764459 [2] P-matrix for branch length 0.100000 @@ -492,7 +984,63 @@ [2] CLV 7: [ {(0.00032,0.92224,0.00032,0.00190),(0.01346,0.58241,0.01346,0.05838)} {(0.00012,0.00002,0.88430,0.00002),(0.00384,0.00084,0.40958,0.00084)} {(0.00860,0.00029,0.00029,0.01259),(0.04432,0.01051,0.01079,0.05590)} {(0.00032,0.92224,0.00032,0.00190),(0.01346,0.58241,0.01346,0.05838)} {(0.00008,0.00047,0.00008,0.88088),(0.00337,0.01459,0.00337,0.41261)} {(0.00008,0.00047,0.00008,0.88088),(0.00337,0.01459,0.00337,0.41261)} {(0.00012,0.00002,0.88430,0.00002),(0.00384,0.00084,0.40958,0.00084)} {(0.00032,0.92224,0.00032,0.00190),(0.01346,0.58241,0.01346,0.05838)} {(0.01721,0.01288,0.00059,0.00058),(0.08865,0.06641,0.02158,0.02103)} {(0.92591,0.00018,0.00108,0.00018),(0.58364,0.00757,0.03458,0.00757)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.92591,0.00018,0.00108,0.00018),(0.58364,0.00757,0.03458,0.00757)} {(0.00008,0.00047,0.00008,0.88088),(0.00337,0.01459,0.00337,0.41261)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00016,0.02092,0.00016,0.04089),(0.00673,0.09220,0.00673,0.15520)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.92591,0.00018,0.00108,0.00018),(0.58364,0.00757,0.03458,0.00757)} {(0.92591,0.00018,0.00108,0.00018),(0.58364,0.00757,0.03458,0.00757)} {(0.00012,0.00002,0.88430,0.00002),(0.00384,0.00084,0.40958,0.00084)} ] - TEST alpha(ncats) = 1.00( 2) + TEST alpha(ncats) = 1.00( 2), mode = MEAN + +0.343711 1.656289 +[3] P-matrix for branch length 0.100000 ++0.9722 +0.0131 +0.0081 +0.0066 ++0.0098 +0.9708 +0.0033 +0.0161 ++0.0242 +0.0131 +0.9561 +0.0066 ++0.0098 +0.0322 +0.0033 +0.9547 + ++0.8764 +0.0594 +0.0344 +0.0297 ++0.0446 +0.8726 +0.0149 +0.0679 ++0.1033 +0.0594 +0.8076 +0.0297 ++0.0446 +0.1359 +0.0149 +0.8047 + + +[3] P-matrix for branch length 0.200000 ++0.9456 +0.0258 +0.0156 +0.0129 ++0.0194 +0.9431 +0.0065 +0.0311 ++0.0469 +0.0258 +0.9144 +0.0129 ++0.0194 +0.0622 +0.0065 +0.9120 + ++0.7757 +0.1100 +0.0593 +0.0550 ++0.0825 +0.7743 +0.0275 +0.1157 ++0.1779 +0.1100 +0.6571 +0.0550 ++0.0825 +0.2315 +0.0275 +0.6585 + + +[3] P-matrix for branch length 1.000000 ++0.7689 +0.1135 +0.0609 +0.0567 ++0.0851 +0.7678 +0.0284 +0.1187 ++0.1826 +0.1135 +0.6472 +0.0567 ++0.0851 +0.2374 +0.0284 +0.6491 + ++0.4092 +0.3199 +0.1110 +0.1599 ++0.2399 +0.4691 +0.0800 +0.2110 ++0.3329 +0.3199 +0.1873 +0.1599 ++0.2399 +0.4220 +0.0800 +0.2581 + + +[3] P-matrix for branch length 1.000000 ++0.7689 +0.1135 +0.0609 +0.0567 ++0.0851 +0.7678 +0.0284 +0.1187 ++0.1826 +0.1135 +0.6472 +0.0567 ++0.0851 +0.2374 +0.0284 +0.6491 + ++0.4092 +0.3199 +0.1110 +0.1599 ++0.2399 +0.4691 +0.0800 +0.2110 ++0.3329 +0.3199 +0.1873 +0.1599 ++0.2399 +0.4220 +0.0800 +0.2581 + + +[3] CLV 5: [ {(0.02475,0.04759,0.00154,0.05791),(0.09138,0.15349,0.02562,0.17153)} {(0.89421,0.00038,0.00220,0.00038),(0.60168,0.00681,0.03166,0.00681)} {(0.02442,0.01827,0.00121,0.00120),(0.08533,0.06388,0.01957,0.01910)} {(0.00067,0.88941,0.00067,0.00387),(0.01210,0.59947,0.01210,0.05358)} {(0.01221,0.00060,0.00061,0.01766),(0.04267,0.00955,0.00979,0.05433)} {(0.00033,0.02932,0.00033,0.05671),(0.00605,0.08961,0.00605,0.15243)} {(0.00024,0.00004,0.83605,0.00004),(0.00352,0.00076,0.43173,0.00076)} {(0.00067,0.88941,0.00067,0.00387),(0.01210,0.59947,0.01210,0.05358)} {(0.00017,0.00097,0.00017,0.83173),(0.00303,0.01340,0.00303,0.43364)} {(0.89421,0.00038,0.00220,0.00038),(0.60168,0.00681,0.03166,0.00681)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.89421,0.00038,0.00220,0.00038),(0.60168,0.00681,0.03166,0.00681)} {(0.00017,0.00097,0.00017,0.83173),(0.00303,0.01340,0.00303,0.43364)} {(0.00017,0.00097,0.00017,0.83173),(0.00303,0.01340,0.00303,0.43364)} {(0.00040,0.00609,0.02361,0.00040),(0.00652,0.02129,0.07228,0.00637)} {(0.00017,0.00097,0.00017,0.83173),(0.00303,0.01340,0.00303,0.43364)} {(0.02442,0.01827,0.00121,0.00120),(0.08533,0.06388,0.01957,0.01910)} {(0.01221,0.00060,0.00061,0.01766),(0.04267,0.00955,0.00979,0.05433)} {(0.00017,0.00097,0.00017,0.83173),(0.00303,0.01340,0.00303,0.43364)} ] +[3] CLV 6: [ {(0.02372,0.00092,0.00014,0.00111),(0.07384,0.01238,0.00789,0.01348)} {(0.01359,0.00006,0.02174,0.00006),(0.03138,0.00093,0.05803,0.00093)} {(0.02400,0.01800,0.00200,0.00198),(0.07982,0.06114,0.02898,0.02814)} {(0.00032,0.81434,0.00032,0.00201),(0.00531,0.40840,0.00531,0.02900)} {(0.01200,0.00099,0.00100,0.01700),(0.03991,0.01407,0.01449,0.04706)} {(0.00001,0.00091,0.00001,0.05024),(0.00085,0.01029,0.00085,0.08903)} {(0.00011,0.00002,0.73088,0.00002),(0.00107,0.00020,0.22937,0.00020)} {(0.00032,0.81434,0.00032,0.00201),(0.00531,0.40840,0.00531,0.02900)} {(0.00533,0.00028,0.00026,0.01538),(0.01275,0.00341,0.00292,0.02895)} {(0.01359,0.00006,0.02174,0.00006),(0.03138,0.00093,0.05803,0.00093)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.02245,0.00866,0.00061,0.00057),(0.05820,0.02608,0.00972,0.00780)} {(0.00007,0.00045,0.00007,0.72418),(0.00090,0.00478,0.00090,0.23110)} {(0.00007,0.00045,0.00007,0.72418),(0.00090,0.00478,0.00090,0.23110)} {(0.00002,0.00566,0.00059,0.00004),(0.00106,0.01578,0.00666,0.00217)} {(0.00007,0.00045,0.00007,0.72418),(0.00090,0.00478,0.00090,0.23110)} {(0.02269,0.00035,0.00009,0.00004),(0.06192,0.00504,0.00516,0.00232)} {(0.00031,0.00093,0.00003,0.00106),(0.00439,0.01089,0.00159,0.01089)} {(0.00007,0.00045,0.00007,0.72418),(0.00090,0.00478,0.00090,0.23110)} ] +[3] CLV 7: [ {(0.00067,0.88941,0.00067,0.00387),(0.01210,0.59947,0.01210,0.05358)} {(0.00024,0.00004,0.83605,0.00004),(0.00352,0.00076,0.43173,0.00076)} {(0.01221,0.00060,0.00061,0.01766),(0.04267,0.00955,0.00979,0.05433)} {(0.00067,0.88941,0.00067,0.00387),(0.01210,0.59947,0.01210,0.05358)} {(0.00017,0.00097,0.00017,0.83173),(0.00303,0.01340,0.00303,0.43364)} {(0.00017,0.00097,0.00017,0.83173),(0.00303,0.01340,0.00303,0.43364)} {(0.00024,0.00004,0.83605,0.00004),(0.00352,0.00076,0.43173,0.00076)} {(0.00067,0.88941,0.00067,0.00387),(0.01210,0.59947,0.01210,0.05358)} {(0.02442,0.01827,0.00121,0.00120),(0.08533,0.06388,0.01957,0.01910)} {(0.89421,0.00038,0.00220,0.00038),(0.60168,0.00681,0.03166,0.00681)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.89421,0.00038,0.00220,0.00038),(0.60168,0.00681,0.03166,0.00681)} {(0.00017,0.00097,0.00017,0.83173),(0.00303,0.01340,0.00303,0.43364)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00033,0.02932,0.00033,0.05671),(0.00605,0.08961,0.00605,0.15243)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.89421,0.00038,0.00220,0.00038),(0.60168,0.00681,0.03166,0.00681)} {(0.89421,0.00038,0.00220,0.00038),(0.60168,0.00681,0.03166,0.00681)} {(0.00024,0.00004,0.83605,0.00004),(0.00352,0.00076,0.43173,0.00076)} ] + + + TEST alpha(ncats) = 1.00( 2), mode = MEDIAN 0.306853 1.693147 [3] P-matrix for branch length 0.100000 @@ -548,7 +1096,63 @@ [3] CLV 7: [ {(0.00054,0.90041,0.00054,0.00313),(0.01256,0.59356,0.01256,0.05522)} {(0.00020,0.00003,0.85216,0.00003),(0.00363,0.00079,0.42404,0.00079)} {(0.01100,0.00049,0.00049,0.01598),(0.04324,0.00988,0.01013,0.05488)} {(0.00054,0.90041,0.00054,0.00313),(0.01256,0.59356,0.01256,0.05522)} {(0.00013,0.00078,0.00013,0.84811),(0.00314,0.01380,0.00314,0.42633)} {(0.00013,0.00078,0.00013,0.84811),(0.00314,0.01380,0.00314,0.42633)} {(0.00020,0.00003,0.85216,0.00003),(0.00363,0.00079,0.42404,0.00079)} {(0.00054,0.90041,0.00054,0.00313),(0.01256,0.59356,0.01256,0.05522)} {(0.02201,0.01647,0.00098,0.00097),(0.08648,0.06476,0.02025,0.01975)} {(0.90485,0.00030,0.00178,0.00030),(0.59545,0.00707,0.03265,0.00707)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.90485,0.00030,0.00178,0.00030),(0.59545,0.00707,0.03265,0.00707)} {(0.00013,0.00078,0.00013,0.84811),(0.00314,0.01380,0.00314,0.42633)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00027,0.02654,0.00027,0.05151),(0.00628,0.09052,0.00628,0.15343)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.90485,0.00030,0.00178,0.00030),(0.59545,0.00707,0.03265,0.00707)} {(0.90485,0.00030,0.00178,0.00030),(0.59545,0.00707,0.03265,0.00707)} {(0.00020,0.00003,0.85216,0.00003),(0.00363,0.00079,0.42404,0.00079)} ] - TEST alpha(ncats) = 1.50( 2) + TEST alpha(ncats) = 1.50( 2), mode = MEAN + +0.455764 1.544236 +[4] P-matrix for branch length 0.100000 ++0.9634 +0.0173 +0.0106 +0.0087 ++0.0130 +0.9616 +0.0043 +0.0211 ++0.0318 +0.0173 +0.9422 +0.0087 ++0.0130 +0.0422 +0.0043 +0.9405 + ++0.8840 +0.0557 +0.0324 +0.0278 ++0.0418 +0.8802 +0.0139 +0.0641 ++0.0973 +0.0557 +0.8192 +0.0278 ++0.0418 +0.1281 +0.0139 +0.8162 + + +[4] P-matrix for branch length 0.200000 ++0.9289 +0.0339 +0.0203 +0.0169 ++0.0254 +0.9258 +0.0085 +0.0403 ++0.0609 +0.0339 +0.8883 +0.0169 ++0.0254 +0.0806 +0.0085 +0.8855 + ++0.7882 +0.1036 +0.0564 +0.0518 ++0.0777 +0.7861 +0.0259 +0.1102 ++0.1692 +0.1036 +0.6753 +0.0518 ++0.0777 +0.2205 +0.0259 +0.6759 + + +[4] P-matrix for branch length 1.000000 ++0.7123 +0.1430 +0.0732 +0.0715 ++0.1073 +0.7151 +0.0358 +0.1419 ++0.2196 +0.1430 +0.5658 +0.0715 ++0.1073 +0.2837 +0.0358 +0.5733 + ++0.4232 +0.3107 +0.1108 +0.1553 ++0.2330 +0.4789 +0.0777 +0.2105 ++0.3324 +0.3107 +0.2016 +0.1553 ++0.2330 +0.4209 +0.0777 +0.2684 + + +[4] P-matrix for branch length 1.000000 ++0.7123 +0.1430 +0.0732 +0.0715 ++0.1073 +0.7151 +0.0358 +0.1419 ++0.2196 +0.1430 +0.5658 +0.0715 ++0.1073 +0.2837 +0.0358 +0.5733 + ++0.4232 +0.3107 +0.1108 +0.1553 ++0.2330 +0.4789 +0.0777 +0.2105 ++0.3324 +0.3107 +0.2016 +0.1553 ++0.2330 +0.4209 +0.0777 +0.2684 + + +[4] CLV 5: [ {(0.03204,0.06083,0.00264,0.07342),(0.08704,0.14776,0.02291,0.16614)} {(0.86282,0.00065,0.00371,0.00065),(0.62118,0.00604,0.02864,0.00604)} {(0.03147,0.02352,0.00206,0.00205),(0.08168,0.06110,0.01754,0.01713)} {(0.00115,0.85715,0.00115,0.00650),(0.01074,0.61802,0.01074,0.04860)} {(0.01573,0.00102,0.00103,0.02250),(0.04084,0.00857,0.00877,0.05253)} {(0.00057,0.03731,0.00057,0.07137),(0.00537,0.08666,0.00537,0.14901)} {(0.00041,0.00007,0.78903,0.00007),(0.00318,0.00067,0.45608,0.00067)} {(0.00115,0.85715,0.00115,0.00650),(0.01074,0.61802,0.01074,0.04860)} {(0.00029,0.00162,0.00029,0.78416),(0.00268,0.01215,0.00268,0.45686)} {(0.86282,0.00065,0.00371,0.00065),(0.62118,0.00604,0.02864,0.00604)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.86282,0.00065,0.00371,0.00065),(0.62118,0.00604,0.02864,0.00604)} {(0.00029,0.00162,0.00029,0.78416),(0.00268,0.01215,0.00268,0.45686)} {(0.00029,0.00162,0.00029,0.78416),(0.00268,0.01215,0.00268,0.45686)} {(0.00069,0.00784,0.03009,0.00068),(0.00585,0.02037,0.06998,0.00571)} {(0.00029,0.00162,0.00029,0.78416),(0.00268,0.01215,0.00268,0.45686)} {(0.03147,0.02352,0.00206,0.00205),(0.08168,0.06110,0.01754,0.01713)} {(0.01573,0.00102,0.00103,0.02250),(0.04084,0.00857,0.00877,0.05253)} {(0.00029,0.00162,0.00029,0.78416),(0.00268,0.01215,0.00268,0.45686)} ] +[4] CLV 6: [ {(0.03027,0.00154,0.00032,0.00183),(0.07137,0.01124,0.00678,0.01232)} {(0.01688,0.00010,0.02748,0.00010),(0.03106,0.00083,0.05700,0.00083)} {(0.03076,0.02308,0.00337,0.00334),(0.07665,0.05854,0.02619,0.02547)} {(0.00054,0.76323,0.00054,0.00341),(0.00473,0.43059,0.00473,0.02633)} {(0.01538,0.00167,0.00168,0.02141),(0.03833,0.01273,0.01310,0.04580)} {(0.00003,0.00151,0.00003,0.06084),(0.00072,0.00949,0.00072,0.08991)} {(0.00018,0.00003,0.66041,0.00003),(0.00100,0.00018,0.25255,0.00018)} {(0.00054,0.76323,0.00054,0.00341),(0.00473,0.43059,0.00473,0.02633)} {(0.00659,0.00046,0.00043,0.01874),(0.01250,0.00312,0.00268,0.02911)} {(0.01688,0.00010,0.02748,0.00010),(0.03106,0.00083,0.05700,0.00083)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.02816,0.01098,0.00105,0.00096),(0.05706,0.02519,0.00875,0.00707)} {(0.00012,0.00073,0.00012,0.65312),(0.00082,0.00442,0.00082,0.25319)} {(0.00012,0.00073,0.00012,0.65312),(0.00082,0.00442,0.00082,0.25319)} {(0.00004,0.00712,0.00097,0.00009),(0.00090,0.01534,0.00613,0.00187)} {(0.00012,0.00073,0.00012,0.65312),(0.00082,0.00442,0.00082,0.25319)} {(0.02858,0.00059,0.00021,0.00008),(0.06041,0.00455,0.00443,0.00198)} {(0.00052,0.00154,0.00006,0.00173),(0.00397,0.01001,0.00136,0.01010)} {(0.00012,0.00073,0.00012,0.65312),(0.00082,0.00442,0.00082,0.25319)} ] +[4] CLV 7: [ {(0.00115,0.85715,0.00115,0.00650),(0.01074,0.61802,0.01074,0.04860)} {(0.00041,0.00007,0.78903,0.00007),(0.00318,0.00067,0.45608,0.00067)} {(0.01573,0.00102,0.00103,0.02250),(0.04084,0.00857,0.00877,0.05253)} {(0.00115,0.85715,0.00115,0.00650),(0.01074,0.61802,0.01074,0.04860)} {(0.00029,0.00162,0.00029,0.78416),(0.00268,0.01215,0.00268,0.45686)} {(0.00029,0.00162,0.00029,0.78416),(0.00268,0.01215,0.00268,0.45686)} {(0.00041,0.00007,0.78903,0.00007),(0.00318,0.00067,0.45608,0.00067)} {(0.00115,0.85715,0.00115,0.00650),(0.01074,0.61802,0.01074,0.04860)} {(0.03147,0.02352,0.00206,0.00205),(0.08168,0.06110,0.01754,0.01713)} {(0.86282,0.00065,0.00371,0.00065),(0.62118,0.00604,0.02864,0.00604)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.86282,0.00065,0.00371,0.00065),(0.62118,0.00604,0.02864,0.00604)} {(0.00029,0.00162,0.00029,0.78416),(0.00268,0.01215,0.00268,0.45686)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00057,0.03731,0.00057,0.07137),(0.00537,0.08666,0.00537,0.14901)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.86282,0.00065,0.00371,0.00065),(0.62118,0.00604,0.02864,0.00604)} {(0.86282,0.00065,0.00371,0.00065),(0.62118,0.00604,0.02864,0.00604)} {(0.00041,0.00007,0.78903,0.00007),(0.00318,0.00067,0.45608,0.00067)} ] + + + TEST alpha(ncats) = 1.50( 2), mode = MEDIAN 0.406939 1.593061 [4] P-matrix for branch length 0.100000 @@ -604,18 +1208,74 @@ [4] CLV 7: [ {(0.00092,0.87099,0.00092,0.00528),(0.01133,0.60982,0.01133,0.05077)} {(0.00033,0.00006,0.80916,0.00006),(0.00333,0.00071,0.44529,0.00071)} {(0.01422,0.00083,0.00083,0.02044),(0.04165,0.00899,0.00921,0.05334)} {(0.00092,0.87099,0.00092,0.00528),(0.01133,0.60982,0.01133,0.05077)} {(0.00023,0.00132,0.00023,0.80449),(0.00283,0.01269,0.00283,0.44656)} {(0.00023,0.00132,0.00023,0.80449),(0.00283,0.01269,0.00283,0.44656)} {(0.00033,0.00006,0.80916,0.00006),(0.00333,0.00071,0.44529,0.00071)} {(0.00092,0.87099,0.00092,0.00528),(0.01133,0.60982,0.01133,0.05077)} {(0.02845,0.02127,0.00167,0.00166),(0.08330,0.06233,0.01842,0.01799)} {(0.87632,0.00052,0.00301,0.00052),(0.61258,0.00637,0.02995,0.00637)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.87632,0.00052,0.00301,0.00052),(0.61258,0.00637,0.02995,0.00637)} {(0.00023,0.00132,0.00023,0.80449),(0.00283,0.01269,0.00283,0.44656)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00046,0.03391,0.00046,0.06519),(0.00566,0.08798,0.00566,0.15057)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.87632,0.00052,0.00301,0.00052),(0.61258,0.00637,0.02995,0.00637)} {(0.87632,0.00052,0.00301,0.00052),(0.61258,0.00637,0.02995,0.00637)} {(0.00033,0.00006,0.80916,0.00006),(0.00333,0.00071,0.44529,0.00071)} ] - TEST alpha(ncats) = 5.00( 2) + TEST alpha(ncats) = 5.00( 2), mode = MEAN -0.653019 1.346981 +0.698660 1.301340 [5] P-matrix for branch length 0.100000 -+0.9482 +0.0246 +0.0149 +0.0123 -+0.0184 +0.9458 +0.0061 +0.0296 -+0.0447 +0.0246 +0.9184 +0.0123 -+0.0184 +0.0593 +0.0061 +0.9162 ++0.9448 +0.0262 +0.0159 +0.0131 ++0.0197 +0.9422 +0.0066 +0.0316 ++0.0476 +0.0262 +0.9130 +0.0131 ++0.0197 +0.0631 +0.0066 +0.9106 -+0.8976 +0.0490 +0.0288 +0.0245 -+0.0368 +0.8940 +0.0123 +0.0570 -+0.0864 +0.0490 +0.8400 +0.0245 ++0.9008 +0.0475 +0.0280 +0.0237 ++0.0356 +0.8972 +0.0119 +0.0553 ++0.0839 +0.0475 +0.8449 +0.0237 ++0.0356 +0.1106 +0.0119 +0.8419 + + +[5] P-matrix for branch length 0.200000 ++0.8941 +0.0507 +0.0298 +0.0254 ++0.0381 +0.8904 +0.0127 +0.0588 ++0.0893 +0.0507 +0.8346 +0.0254 ++0.0381 +0.1176 +0.0127 +0.8316 + ++0.8164 +0.0893 +0.0496 +0.0447 ++0.0670 +0.8134 +0.0223 +0.0973 ++0.1489 +0.0893 +0.7171 +0.0447 ++0.0670 +0.1946 +0.0223 +0.7160 + + +[5] P-matrix for branch length 1.000000 ++0.6128 +0.1970 +0.0917 +0.0985 ++0.1478 +0.6272 +0.0493 +0.1758 ++0.2750 +0.1970 +0.4295 +0.0985 ++0.1478 +0.3516 +0.0493 +0.4514 + ++0.4603 +0.2869 +0.1093 +0.1435 ++0.2152 +0.5056 +0.0717 +0.2075 ++0.3279 +0.2869 +0.2417 +0.1435 ++0.2152 +0.4149 +0.0717 +0.2981 + + +[5] P-matrix for branch length 1.000000 ++0.6128 +0.1970 +0.0917 +0.0985 ++0.1478 +0.6272 +0.0493 +0.1758 ++0.2750 +0.1970 +0.4295 +0.0985 ++0.1478 +0.3516 +0.0493 +0.4514 + ++0.4603 +0.2869 +0.1093 +0.1435 ++0.2152 +0.5056 +0.0717 +0.2075 ++0.3279 +0.2869 +0.2417 +0.1435 ++0.2152 +0.4149 +0.0717 +0.2981 + + +[5] CLV 5: [ {(0.04666,0.08627,0.00582,0.10231),(0.07690,0.13364,0.01729,0.15241)} {(0.79947,0.00145,0.00797,0.00145),(0.66648,0.00449,0.02218,0.00449)} {(0.04537,0.03389,0.00453,0.00448),(0.07292,0.05448,0.01330,0.01304)} {(0.00258,0.79287,0.00258,0.01384),(0.00798,0.66156,0.00798,0.03789)} {(0.02269,0.00224,0.00226,0.03165),(0.03646,0.00652,0.00665,0.04797)} {(0.00129,0.05238,0.00129,0.09784),(0.00399,0.07916,0.00399,0.13937)} {(0.00089,0.00016,0.69661,0.00016),(0.00246,0.00050,0.51422,0.00050)} {(0.00258,0.79287,0.00258,0.01384),(0.00798,0.66156,0.00798,0.03789)} {(0.00064,0.00346,0.00064,0.69157),(0.00199,0.00947,0.00199,0.51271)} {(0.79947,0.00145,0.00797,0.00145),(0.66648,0.00449,0.02218,0.00449)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.79947,0.00145,0.00797,0.00145),(0.66648,0.00449,0.02218,0.00449)} {(0.00064,0.00346,0.00064,0.69157),(0.00199,0.00947,0.00199,0.51271)} {(0.00064,0.00346,0.00064,0.69157),(0.00199,0.00947,0.00199,0.51271)} {(0.00151,0.01130,0.04235,0.00149),(0.00443,0.01816,0.06405,0.00435)} {(0.00064,0.00346,0.00064,0.69157),(0.00199,0.00947,0.00199,0.51271)} {(0.04537,0.03389,0.00453,0.00448),(0.07292,0.05448,0.01330,0.01304)} {(0.02269,0.00224,0.00226,0.03165),(0.03646,0.00652,0.00665,0.04797)} {(0.00064,0.00346,0.00064,0.69157),(0.00199,0.00947,0.00199,0.51271)} ] +[5] CLV 6: [ {(0.04272,0.00325,0.00099,0.00379),(0.06509,0.00879,0.00462,0.00978)} {(0.02248,0.00022,0.03790,0.00022),(0.02985,0.00063,0.05375,0.00063)} {(0.04389,0.03299,0.00724,0.00714),(0.06895,0.05236,0.02025,0.01976)} {(0.00119,0.66564,0.00119,0.00738),(0.00355,0.48479,0.00355,0.02053)} {(0.02194,0.00357,0.00362,0.02942),(0.03448,0.00988,0.01013,0.04248)} {(0.00010,0.00309,0.00010,0.07687),(0.00048,0.00768,0.00048,0.09042)} {(0.00035,0.00006,0.53089,0.00006),(0.00083,0.00015,0.31173,0.00015)} {(0.00119,0.66564,0.00119,0.00738),(0.00355,0.48479,0.00355,0.02053)} {(0.00874,0.00096,0.00087,0.02398),(0.01182,0.00248,0.00216,0.02899)} {(0.02248,0.00022,0.03790,0.00022),(0.02985,0.00063,0.05375,0.00063)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.03834,0.01531,0.00230,0.00202),(0.05371,0.02299,0.00669,0.00550)} {(0.00025,0.00148,0.00025,0.52392),(0.00065,0.00360,0.00065,0.30990)} {(0.00025,0.00148,0.00025,0.52392),(0.00065,0.00360,0.00065,0.30990)} {(0.00012,0.00979,0.00198,0.00028),(0.00060,0.01420,0.00495,0.00128)} {(0.00025,0.00148,0.00025,0.52392),(0.00065,0.00360,0.00065,0.30990)} {(0.03924,0.00126,0.00065,0.00027),(0.05629,0.00351,0.00302,0.00132)} {(0.00111,0.00318,0.00018,0.00346),(0.00308,0.00804,0.00090,0.00827)} {(0.00025,0.00148,0.00025,0.52392),(0.00065,0.00360,0.00065,0.30990)} ] +[5] CLV 7: [ {(0.00258,0.79287,0.00258,0.01384),(0.00798,0.66156,0.00798,0.03789)} {(0.00089,0.00016,0.69661,0.00016),(0.00246,0.00050,0.51422,0.00050)} {(0.02269,0.00224,0.00226,0.03165),(0.03646,0.00652,0.00665,0.04797)} {(0.00258,0.79287,0.00258,0.01384),(0.00798,0.66156,0.00798,0.03789)} {(0.00064,0.00346,0.00064,0.69157),(0.00199,0.00947,0.00199,0.51271)} {(0.00064,0.00346,0.00064,0.69157),(0.00199,0.00947,0.00199,0.51271)} {(0.00089,0.00016,0.69661,0.00016),(0.00246,0.00050,0.51422,0.00050)} {(0.00258,0.79287,0.00258,0.01384),(0.00798,0.66156,0.00798,0.03789)} {(0.04537,0.03389,0.00453,0.00448),(0.07292,0.05448,0.01330,0.01304)} {(0.79947,0.00145,0.00797,0.00145),(0.66648,0.00449,0.02218,0.00449)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.79947,0.00145,0.00797,0.00145),(0.66648,0.00449,0.02218,0.00449)} {(0.00064,0.00346,0.00064,0.69157),(0.00199,0.00947,0.00199,0.51271)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00129,0.05238,0.00129,0.09784),(0.00399,0.07916,0.00399,0.13937)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.79947,0.00145,0.00797,0.00145),(0.66648,0.00449,0.02218,0.00449)} {(0.79947,0.00145,0.00797,0.00145),(0.66648,0.00449,0.02218,0.00449)} {(0.00089,0.00016,0.69661,0.00016),(0.00246,0.00050,0.51422,0.00050)} ] + + + TEST alpha(ncats) = 5.00( 2), mode = MEDIAN + +0.653019 1.346981 +[5] P-matrix for branch length 0.100000 ++0.9482 +0.0246 +0.0149 +0.0123 ++0.0184 +0.9458 +0.0061 +0.0296 ++0.0447 +0.0246 +0.9184 +0.0123 ++0.0184 +0.0593 +0.0061 +0.9162 + ++0.8976 +0.0490 +0.0288 +0.0245 ++0.0368 +0.8940 +0.0123 +0.0570 ++0.0864 +0.0490 +0.8400 +0.0245 +0.0368 +0.1140 +0.0123 +0.8370 @@ -660,7 +1320,63 @@ [5] CLV 7: [ {(0.00227,0.80439,0.00227,0.01231),(0.00847,0.65301,0.00847,0.03988)} {(0.00079,0.00014,0.71304,0.00014),(0.00260,0.00053,0.50270,0.00053)} {(0.02145,0.00198,0.00200,0.03006),(0.03733,0.00689,0.00704,0.04890)} {(0.00227,0.80439,0.00227,0.01231),(0.00847,0.65301,0.00847,0.03988)} {(0.00057,0.00308,0.00057,0.70794),(0.00212,0.00997,0.00212,0.50160)} {(0.00057,0.00308,0.00057,0.70794),(0.00212,0.00997,0.00212,0.50160)} {(0.00079,0.00014,0.71304,0.00014),(0.00260,0.00053,0.50270,0.00053)} {(0.00227,0.80439,0.00227,0.01231),(0.00847,0.65301,0.00847,0.03988)} {(0.04290,0.03204,0.00401,0.00396),(0.07465,0.05579,0.01408,0.01379)} {(0.81091,0.00128,0.00708,0.00128),(0.65764,0.00477,0.02338,0.00477)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.81091,0.00128,0.00708,0.00128),(0.65764,0.00477,0.02338,0.00477)} {(0.00057,0.00308,0.00057,0.70794),(0.00212,0.00997,0.00212,0.50160)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00113,0.04976,0.00113,0.09337),(0.00424,0.08069,0.00424,0.14144)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.81091,0.00128,0.00708,0.00128),(0.65764,0.00477,0.02338,0.00477)} {(0.81091,0.00128,0.00708,0.00128),(0.65764,0.00477,0.02338,0.00477)} {(0.00079,0.00014,0.71304,0.00014),(0.00260,0.00053,0.50270,0.00053)} ] - TEST alpha(ncats) = 10.00( 2) + TEST alpha(ncats) = 10.00( 2), mode = MEAN + +0.786761 1.213239 +[6] P-matrix for branch length 0.100000 ++0.9381 +0.0294 +0.0177 +0.0147 ++0.0221 +0.9354 +0.0074 +0.0352 ++0.0532 +0.0294 +0.9027 +0.0147 ++0.0221 +0.0704 +0.0074 +0.9001 + ++0.9071 +0.0444 +0.0263 +0.0222 ++0.0333 +0.9035 +0.0111 +0.0520 ++0.0788 +0.0444 +0.8545 +0.0222 ++0.0333 +0.1041 +0.0111 +0.8515 + + +[6] P-matrix for branch length 0.200000 ++0.8820 +0.0567 +0.0330 +0.0283 ++0.0425 +0.8782 +0.0142 +0.0651 ++0.0989 +0.0567 +0.8161 +0.0283 ++0.0425 +0.1302 +0.0142 +0.8132 + ++0.8270 +0.0840 +0.0470 +0.0420 ++0.0630 +0.8237 +0.0210 +0.0923 ++0.1411 +0.0840 +0.7330 +0.0420 ++0.0630 +0.1846 +0.0210 +0.7315 + + +[6] P-matrix for branch length 1.000000 ++0.5833 +0.2137 +0.0962 +0.1068 ++0.1602 +0.6023 +0.0534 +0.1840 ++0.2887 +0.2137 +0.3908 +0.1068 ++0.1602 +0.3681 +0.0534 +0.4183 + ++0.4765 +0.2768 +0.1082 +0.1384 ++0.2076 +0.5177 +0.0692 +0.2055 ++0.3247 +0.2768 +0.2601 +0.1384 ++0.2076 +0.4110 +0.0692 +0.3122 + + +[6] P-matrix for branch length 1.000000 ++0.5833 +0.2137 +0.0962 +0.1068 ++0.1602 +0.6023 +0.0534 +0.1840 ++0.2887 +0.2137 +0.3908 +0.1068 ++0.1602 +0.3681 +0.0534 +0.4183 + ++0.4765 +0.2768 +0.1082 +0.1384 ++0.2076 +0.5177 +0.0692 +0.2055 ++0.3247 +0.2768 +0.2601 +0.1384 ++0.2076 +0.4110 +0.0692 +0.3122 + + +[6] CLV 5: [ {(0.05159,0.09449,0.00721,0.11139),(0.07296,0.12790,0.01537,0.14664)} {(0.77799,0.00181,0.00978,0.00181),(0.68400,0.00396,0.01990,0.00396)} {(0.04998,0.03733,0.00560,0.00553),(0.06943,0.05187,0.01184,0.01162)} {(0.00321,0.77131,0.00321,0.01695),(0.00705,0.67856,0.00705,0.03407)} {(0.02499,0.00277,0.00280,0.03456),(0.03472,0.00581,0.00592,0.04606)} {(0.00161,0.05716,0.00161,0.10585),(0.00352,0.07603,0.00352,0.13502)} {(0.00109,0.00020,0.66604,0.00020),(0.00221,0.00044,0.53728,0.00044)} {(0.00321,0.77131,0.00321,0.01695),(0.00705,0.67856,0.00705,0.03407)} {(0.00080,0.00424,0.00080,0.66122),(0.00176,0.00852,0.00176,0.53502)} {(0.77799,0.00181,0.00978,0.00181),(0.68400,0.00396,0.01990,0.00396)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.77799,0.00181,0.00978,0.00181),(0.68400,0.00396,0.01990,0.00396)} {(0.00080,0.00424,0.00080,0.66122),(0.00176,0.00852,0.00176,0.53502)} {(0.00080,0.00424,0.00080,0.66122),(0.00176,0.00852,0.00176,0.53502)} {(0.00187,0.01244,0.04625,0.00184),(0.00395,0.01729,0.06154,0.00387)} {(0.00080,0.00424,0.00080,0.66122),(0.00176,0.00852,0.00176,0.53502)} {(0.04998,0.03733,0.00560,0.00553),(0.06943,0.05187,0.01184,0.01162)} {(0.02499,0.00277,0.00280,0.03456),(0.03472,0.00581,0.00592,0.04606)} {(0.00080,0.00424,0.00080,0.66122),(0.00176,0.00852,0.00176,0.53502)} ] +[6] CLV 6: [ {(0.04670,0.00397,0.00135,0.00459),(0.06246,0.00792,0.00393,0.00886)} {(0.02407,0.00027,0.04104,0.00027),(0.02921,0.00056,0.05218,0.00056)} {(0.04817,0.03625,0.00890,0.00875),(0.06586,0.04992,0.01816,0.01774)} {(0.00147,0.63422,0.00147,0.00907),(0.00315,0.50676,0.00315,0.01845)} {(0.02409,0.00438,0.00445,0.03188),(0.03293,0.00887,0.00908,0.04105)} {(0.00014,0.00373,0.00014,0.08079),(0.00041,0.00700,0.00041,0.09000)} {(0.00042,0.00007,0.49072,0.00007),(0.00076,0.00014,0.33667,0.00014)} {(0.00147,0.63422,0.00147,0.00907),(0.00315,0.50676,0.00315,0.01845)} {(0.00936,0.00116,0.00105,0.02531),(0.01151,0.00224,0.00196,0.02875)} {(0.02407,0.00027,0.04104,0.00027),(0.02921,0.00056,0.05218,0.00056)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.04137,0.01668,0.00285,0.00247),(0.05215,0.02209,0.00598,0.00495)} {(0.00030,0.00178,0.00030,0.48424),(0.00058,0.00329,0.00058,0.33394)} {(0.00030,0.00178,0.00030,0.48424),(0.00058,0.00329,0.00058,0.33394)} {(0.00017,0.01061,0.00239,0.00038),(0.00051,0.01371,0.00451,0.00109)} {(0.00030,0.00178,0.00030,0.48424),(0.00058,0.00329,0.00058,0.33394)} {(0.04249,0.00154,0.00088,0.00037),(0.05447,0.00314,0.00256,0.00112)} {(0.00136,0.00384,0.00025,0.00415),(0.00276,0.00731,0.00076,0.00758)} {(0.00030,0.00178,0.00030,0.48424),(0.00058,0.00329,0.00058,0.33394)} ] +[6] CLV 7: [ {(0.00321,0.77131,0.00321,0.01695),(0.00705,0.67856,0.00705,0.03407)} {(0.00109,0.00020,0.66604,0.00020),(0.00221,0.00044,0.53728,0.00044)} {(0.02499,0.00277,0.00280,0.03456),(0.03472,0.00581,0.00592,0.04606)} {(0.00321,0.77131,0.00321,0.01695),(0.00705,0.67856,0.00705,0.03407)} {(0.00080,0.00424,0.00080,0.66122),(0.00176,0.00852,0.00176,0.53502)} {(0.00080,0.00424,0.00080,0.66122),(0.00176,0.00852,0.00176,0.53502)} {(0.00109,0.00020,0.66604,0.00020),(0.00221,0.00044,0.53728,0.00044)} {(0.00321,0.77131,0.00321,0.01695),(0.00705,0.67856,0.00705,0.03407)} {(0.04998,0.03733,0.00560,0.00553),(0.06943,0.05187,0.01184,0.01162)} {(0.77799,0.00181,0.00978,0.00181),(0.68400,0.00396,0.01990,0.00396)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.77799,0.00181,0.00978,0.00181),(0.68400,0.00396,0.01990,0.00396)} {(0.00080,0.00424,0.00080,0.66122),(0.00176,0.00852,0.00176,0.53502)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00161,0.05716,0.00161,0.10585),(0.00352,0.07603,0.00352,0.13502)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.77799,0.00181,0.00978,0.00181),(0.68400,0.00396,0.01990,0.00396)} {(0.77799,0.00181,0.00978,0.00181),(0.68400,0.00396,0.01990,0.00396)} {(0.00109,0.00020,0.66604,0.00020),(0.00221,0.00044,0.53728,0.00044)} ] + + + TEST alpha(ncats) = 10.00( 2), mode = MEDIAN 0.751180 1.248820 [6] P-matrix for branch length 0.100000 @@ -716,7 +1432,63 @@ [6] CLV 7: [ {(0.00295,0.77991,0.00295,0.01567),(0.00742,0.67161,0.00742,0.03561)} {(0.00100,0.00018,0.67821,0.00018),(0.00231,0.00046,0.52783,0.00046)} {(0.02407,0.00255,0.00258,0.03341),(0.03543,0.00609,0.00621,0.04684)} {(0.00295,0.77991,0.00295,0.01567),(0.00742,0.67161,0.00742,0.03561)} {(0.00074,0.00392,0.00074,0.67328),(0.00185,0.00890,0.00185,0.52587)} {(0.00074,0.00392,0.00074,0.67328),(0.00185,0.00890,0.00185,0.52587)} {(0.00100,0.00018,0.67821,0.00018),(0.00231,0.00046,0.52783,0.00046)} {(0.00295,0.77991,0.00295,0.01567),(0.00742,0.67161,0.00742,0.03561)} {(0.04815,0.03596,0.00516,0.00510),(0.07086,0.05294,0.01243,0.01219)} {(0.78657,0.00166,0.00903,0.00166),(0.67685,0.00417,0.02082,0.00417)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.78657,0.00166,0.00903,0.00166),(0.67685,0.00417,0.02082,0.00417)} {(0.00074,0.00392,0.00074,0.67328),(0.00185,0.00890,0.00185,0.52587)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00147,0.05527,0.00147,0.10271),(0.00371,0.07732,0.00371,0.13684)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.78657,0.00166,0.00903,0.00166),(0.67685,0.00417,0.02082,0.00417)} {(0.78657,0.00166,0.00903,0.00166),(0.67685,0.00417,0.02082,0.00417)} {(0.00100,0.00018,0.67821,0.00018),(0.00231,0.00046,0.52783,0.00046)} ] - TEST alpha(ncats) = 50.00( 2) + TEST alpha(ncats) = 50.00( 2), mode = MEAN + +0.904614 1.095386 +[7] P-matrix for branch length 0.100000 ++0.9294 +0.0336 +0.0202 +0.0168 ++0.0252 +0.9263 +0.0084 +0.0400 ++0.0605 +0.0336 +0.8891 +0.0168 ++0.0252 +0.0800 +0.0084 +0.8863 + ++0.9155 +0.0404 +0.0240 +0.0202 ++0.0303 +0.9121 +0.0101 +0.0475 ++0.0720 +0.0404 +0.8675 +0.0202 ++0.0303 +0.0951 +0.0101 +0.8646 + + +[7] P-matrix for branch length 0.200000 ++0.8663 +0.0644 +0.0371 +0.0322 ++0.0483 +0.8625 +0.0161 +0.0731 ++0.1113 +0.0644 +0.7921 +0.0322 ++0.0483 +0.1462 +0.0161 +0.7893 + ++0.8417 +0.0766 +0.0434 +0.0383 ++0.0575 +0.8381 +0.0192 +0.0853 ++0.1301 +0.0766 +0.7549 +0.0383 ++0.0575 +0.1705 +0.0192 +0.7528 + + +[7] P-matrix for branch length 1.000000 ++0.5483 +0.2338 +0.1010 +0.1169 ++0.1753 +0.5736 +0.0584 +0.1926 ++0.3030 +0.2338 +0.3463 +0.1169 ++0.1753 +0.3851 +0.0584 +0.3811 + ++0.5010 +0.2619 +0.1062 +0.1309 ++0.1964 +0.5363 +0.0655 +0.2018 ++0.3186 +0.2619 +0.2886 +0.1309 ++0.1964 +0.4037 +0.0655 +0.3344 + + +[7] P-matrix for branch length 1.000000 ++0.5483 +0.2338 +0.1010 +0.1169 ++0.1753 +0.5736 +0.0584 +0.1926 ++0.3030 +0.2338 +0.3463 +0.1169 ++0.1753 +0.3851 +0.0584 +0.3811 + ++0.5010 +0.2619 +0.1062 +0.1309 ++0.1964 +0.5363 +0.0655 +0.2018 ++0.3186 +0.2619 +0.2886 +0.1309 ++0.1964 +0.4037 +0.0655 +0.3344 + + +[7] CLV 5: [ {(0.05789,0.10473,0.00925,0.12248),(0.06744,0.11963,0.01291,0.13818)} {(0.75040,0.00234,0.01238,0.00234),(0.70840,0.00330,0.01693,0.00330)} {(0.05582,0.04168,0.00717,0.00707),(0.06450,0.04817,0.00997,0.00980)} {(0.00415,0.74383,0.00415,0.02138),(0.00587,0.70240,0.00587,0.02908)} {(0.02791,0.00353,0.00358,0.03815),(0.03225,0.00490,0.00499,0.04327)} {(0.00208,0.06305,0.00208,0.11542),(0.00294,0.07146,0.00294,0.12838)} {(0.00138,0.00026,0.62739,0.00026),(0.00188,0.00037,0.56990,0.00037)} {(0.00415,0.74383,0.00415,0.02138),(0.00587,0.70240,0.00587,0.02908)} {(0.00104,0.00534,0.00104,0.62307),(0.00147,0.00727,0.00147,0.56675)} {(0.75040,0.00234,0.01238,0.00234),(0.70840,0.00330,0.01693,0.00330)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.75040,0.00234,0.01238,0.00234),(0.70840,0.00330,0.01693,0.00330)} {(0.00104,0.00534,0.00104,0.62307),(0.00147,0.00727,0.00147,0.56675)} {(0.00104,0.00534,0.00104,0.62307),(0.00147,0.00727,0.00147,0.56675)} {(0.00239,0.01389,0.05104,0.00236),(0.00332,0.01606,0.05786,0.00327)} {(0.00104,0.00534,0.00104,0.62307),(0.00147,0.00727,0.00147,0.56675)} {(0.05582,0.04168,0.00717,0.00707),(0.06450,0.04817,0.00997,0.00980)} {(0.02791,0.00353,0.00358,0.03815),(0.03225,0.00490,0.00499,0.04327)} {(0.00104,0.00534,0.00104,0.62307),(0.00147,0.00727,0.00147,0.56675)} ] +[7] CLV 6: [ {(0.05161,0.00500,0.00193,0.00573),(0.05864,0.00677,0.00308,0.00765)} {(0.02588,0.00034,0.04476,0.00034),(0.02816,0.00047,0.04972,0.00047)} {(0.05354,0.04036,0.01127,0.01107),(0.06143,0.04646,0.01543,0.01511)} {(0.00189,0.59513,0.00189,0.01150),(0.00264,0.53830,0.00264,0.01572)} {(0.02677,0.00553,0.00564,0.03483),(0.03072,0.00755,0.00772,0.03890)} {(0.00019,0.00461,0.00019,0.08479),(0.00032,0.00609,0.00032,0.08876)} {(0.00052,0.00009,0.44190,0.00009),(0.00067,0.00012,0.37335,0.00012)} {(0.00189,0.59513,0.00189,0.01150),(0.00264,0.53830,0.00264,0.01572)} {(0.01009,0.00145,0.00130,0.02671),(0.01103,0.00193,0.00171,0.02821)} {(0.02588,0.00034,0.04476,0.00034),(0.02816,0.00047,0.04972,0.00047)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.04496,0.01836,0.00364,0.00311),(0.04975,0.02077,0.00505,0.00423)} {(0.00038,0.00219,0.00038,0.43628),(0.00050,0.00287,0.00050,0.36945)} {(0.00038,0.00219,0.00038,0.43628),(0.00050,0.00287,0.00050,0.36945)} {(0.00024,0.01160,0.00297,0.00054),(0.00039,0.01298,0.00392,0.00086)} {(0.00038,0.00219,0.00038,0.43628),(0.00050,0.00287,0.00050,0.36945)} {(0.04638,0.00195,0.00125,0.00053),(0.05171,0.00267,0.00201,0.00087)} {(0.00173,0.00477,0.00036,0.00509),(0.00235,0.00633,0.00059,0.00663)} {(0.00038,0.00219,0.00038,0.43628),(0.00050,0.00287,0.00050,0.36945)} ] +[7] CLV 7: [ {(0.00415,0.74383,0.00415,0.02138),(0.00587,0.70240,0.00587,0.02908)} {(0.00138,0.00026,0.62739,0.00026),(0.00188,0.00037,0.56990,0.00037)} {(0.02791,0.00353,0.00358,0.03815),(0.03225,0.00490,0.00499,0.04327)} {(0.00415,0.74383,0.00415,0.02138),(0.00587,0.70240,0.00587,0.02908)} {(0.00104,0.00534,0.00104,0.62307),(0.00147,0.00727,0.00147,0.56675)} {(0.00104,0.00534,0.00104,0.62307),(0.00147,0.00727,0.00147,0.56675)} {(0.00138,0.00026,0.62739,0.00026),(0.00188,0.00037,0.56990,0.00037)} {(0.00415,0.74383,0.00415,0.02138),(0.00587,0.70240,0.00587,0.02908)} {(0.05582,0.04168,0.00717,0.00707),(0.06450,0.04817,0.00997,0.00980)} {(0.75040,0.00234,0.01238,0.00234),(0.70840,0.00330,0.01693,0.00330)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.75040,0.00234,0.01238,0.00234),(0.70840,0.00330,0.01693,0.00330)} {(0.00104,0.00534,0.00104,0.62307),(0.00147,0.00727,0.00147,0.56675)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00208,0.06305,0.00208,0.11542),(0.00294,0.07146,0.00294,0.12838)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.75040,0.00234,0.01238,0.00234),(0.70840,0.00330,0.01693,0.00330)} {(0.75040,0.00234,0.01238,0.00234),(0.70840,0.00330,0.01693,0.00330)} {(0.00138,0.00026,0.62739,0.00026),(0.00188,0.00037,0.56990,0.00037)} ] + + + TEST alpha(ncats) = 50.00( 2), mode = MEDIAN 0.887475 1.112525 [7] P-matrix for branch length 0.100000 @@ -772,7 +1544,63 @@ [7] CLV 7: [ {(0.00401,0.74773,0.00401,0.02072),(0.00604,0.69886,0.00604,0.02980)} {(0.00133,0.00025,0.63286,0.00025),(0.00193,0.00038,0.56503,0.00038)} {(0.02750,0.00342,0.00347,0.03765),(0.03262,0.00503,0.00512,0.04369)} {(0.00401,0.74773,0.00401,0.02072),(0.00604,0.69886,0.00604,0.02980)} {(0.00100,0.00518,0.00100,0.62845),(0.00151,0.00745,0.00151,0.56200)} {(0.00100,0.00518,0.00100,0.62845),(0.00151,0.00745,0.00151,0.56200)} {(0.00133,0.00025,0.63286,0.00025),(0.00193,0.00038,0.56503,0.00038)} {(0.00401,0.74773,0.00401,0.02072),(0.00604,0.69886,0.00604,0.02980)} {(0.05499,0.04106,0.00693,0.00684),(0.06524,0.04873,0.01024,0.01006)} {(0.75433,0.00226,0.01199,0.00226),(0.70478,0.00340,0.01736,0.00340)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.75433,0.00226,0.01199,0.00226),(0.70478,0.00340,0.01736,0.00340)} {(0.00100,0.00518,0.00100,0.62845),(0.00151,0.00745,0.00151,0.56200)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00200,0.06223,0.00200,0.11410),(0.00302,0.07215,0.00302,0.12941)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.75433,0.00226,0.01199,0.00226),(0.70478,0.00340,0.01736,0.00340)} {(0.75433,0.00226,0.01199,0.00226),(0.70478,0.00340,0.01736,0.00340)} {(0.00133,0.00025,0.63286,0.00025),(0.00193,0.00038,0.56503,0.00038)} ] - TEST alpha(ncats) = 100.00( 2) + TEST alpha(ncats) = 100.00( 2), mode = MEAN + +0.932551 1.067449 +[8] P-matrix for branch length 0.100000 ++0.9273 +0.0346 +0.0207 +0.0173 ++0.0260 +0.9242 +0.0087 +0.0411 ++0.0622 +0.0346 +0.8859 +0.0173 ++0.0260 +0.0823 +0.0087 +0.8831 + ++0.9175 +0.0394 +0.0234 +0.0197 ++0.0295 +0.9142 +0.0098 +0.0465 ++0.0703 +0.0394 +0.8706 +0.0197 ++0.0295 +0.0929 +0.0098 +0.8677 + + +[8] P-matrix for branch length 0.200000 ++0.8626 +0.0663 +0.0380 +0.0331 ++0.0497 +0.8588 +0.0166 +0.0750 ++0.1141 +0.0663 +0.7865 +0.0331 ++0.0497 +0.1499 +0.0166 +0.7838 + ++0.8452 +0.0749 +0.0425 +0.0374 ++0.0562 +0.8416 +0.0187 +0.0835 ++0.1274 +0.0749 +0.7602 +0.0374 ++0.0562 +0.1671 +0.0187 +0.7580 + + +[8] P-matrix for branch length 1.000000 ++0.5407 +0.2382 +0.1019 +0.1191 ++0.1787 +0.5675 +0.0596 +0.1942 ++0.3058 +0.2382 +0.3368 +0.1191 ++0.1787 +0.3885 +0.0596 +0.3733 + ++0.5073 +0.2581 +0.1056 +0.1291 ++0.1936 +0.5411 +0.0645 +0.2008 ++0.3168 +0.2581 +0.2961 +0.1291 ++0.1936 +0.4015 +0.0645 +0.3404 + + +[8] P-matrix for branch length 1.000000 ++0.5407 +0.2382 +0.1019 +0.1191 ++0.1787 +0.5675 +0.0596 +0.1942 ++0.3058 +0.2382 +0.3368 +0.1191 ++0.1787 +0.3885 +0.0596 +0.3733 + ++0.5073 +0.2581 +0.1056 +0.1291 ++0.1936 +0.5411 +0.0645 +0.2008 ++0.3168 +0.2581 +0.2961 +0.1291 ++0.1936 +0.4015 +0.0645 +0.3404 + + +[8] CLV 5: [ {(0.05934,0.10704,0.00975,0.12495),(0.06609,0.11757,0.01235,0.13605)} {(0.74405,0.00247,0.01302,0.00247),(0.71436,0.00315,0.01624,0.00315)} {(0.05715,0.04267,0.00756,0.00745),(0.06329,0.04726,0.00954,0.00938)} {(0.00439,0.73753,0.00439,0.02247),(0.00561,0.70824,0.00561,0.02792)} {(0.02857,0.00372,0.00378,0.03895),(0.03164,0.00469,0.00477,0.04257)} {(0.00219,0.06437,0.00219,0.11750),(0.00280,0.07031,0.00280,0.12666)} {(0.00145,0.00027,0.61859,0.00027),(0.00180,0.00035,0.57795,0.00035)} {(0.00439,0.73753,0.00439,0.02247),(0.00561,0.70824,0.00561,0.02792)} {(0.00110,0.00562,0.00110,0.61441),(0.00140,0.00698,0.00140,0.57460)} {(0.74405,0.00247,0.01302,0.00247),(0.71436,0.00315,0.01624,0.00315)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.74405,0.00247,0.01302,0.00247),(0.71436,0.00315,0.01624,0.00315)} {(0.00110,0.00562,0.00110,0.61441),(0.00140,0.00698,0.00140,0.57460)} {(0.00110,0.00562,0.00110,0.61441),(0.00140,0.00698,0.00140,0.57460)} {(0.00252,0.01422,0.05211,0.00248),(0.00318,0.01575,0.05693,0.00313)} {(0.00110,0.00562,0.00110,0.61441),(0.00140,0.00698,0.00140,0.57460)} {(0.05715,0.04267,0.00756,0.00745),(0.06329,0.04726,0.00954,0.00938)} {(0.02857,0.00372,0.00378,0.03895),(0.03164,0.00469,0.00477,0.04257)} {(0.00110,0.00562,0.00110,0.61441),(0.00140,0.00698,0.00140,0.57460)} ] +[8] CLV 6: [ {(0.05271,0.00525,0.00208,0.00600),(0.05767,0.00651,0.00289,0.00736)} {(0.02626,0.00036,0.04557,0.00036),(0.02787,0.00045,0.04907,0.00045)} {(0.05476,0.04130,0.01186,0.01164),(0.06034,0.04561,0.01480,0.01450)} {(0.00199,0.58633,0.00199,0.01209),(0.00252,0.54616,0.00252,0.01508)} {(0.02738,0.00582,0.00593,0.03548),(0.03017,0.00725,0.00740,0.03836)} {(0.00021,0.00483,0.00021,0.08555),(0.00030,0.00587,0.00030,0.08835)} {(0.00054,0.00009,0.43108,0.00009),(0.00065,0.00011,0.38265,0.00011)} {(0.00199,0.58633,0.00199,0.01209),(0.00252,0.54616,0.00252,0.01508)} {(0.01024,0.00152,0.00135,0.02699),(0.01091,0.00186,0.00165,0.02804)} {(0.02626,0.00036,0.04557,0.00036),(0.02787,0.00045,0.04907,0.00045)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.04574,0.01874,0.00384,0.00327),(0.04912,0.02044,0.00483,0.00406)} {(0.00039,0.00229,0.00039,0.42570),(0.00048,0.00277,0.00048,0.37848)} {(0.00039,0.00229,0.00039,0.42570),(0.00048,0.00277,0.00048,0.37848)} {(0.00026,0.01182,0.00310,0.00058),(0.00037,0.01279,0.00378,0.00081)} {(0.00039,0.00229,0.00039,0.42570),(0.00048,0.00277,0.00048,0.37848)} {(0.04723,0.00205,0.00135,0.00058),(0.05100,0.00256,0.00189,0.00081)} {(0.00181,0.00500,0.00039,0.00532),(0.00226,0.00610,0.00055,0.00641)} {(0.00039,0.00229,0.00039,0.42570),(0.00048,0.00277,0.00048,0.37848)} ] +[8] CLV 7: [ {(0.00439,0.73753,0.00439,0.02247),(0.00561,0.70824,0.00561,0.02792)} {(0.00145,0.00027,0.61859,0.00027),(0.00180,0.00035,0.57795,0.00035)} {(0.02857,0.00372,0.00378,0.03895),(0.03164,0.00469,0.00477,0.04257)} {(0.00439,0.73753,0.00439,0.02247),(0.00561,0.70824,0.00561,0.02792)} {(0.00110,0.00562,0.00110,0.61441),(0.00140,0.00698,0.00140,0.57460)} {(0.00110,0.00562,0.00110,0.61441),(0.00140,0.00698,0.00140,0.57460)} {(0.00145,0.00027,0.61859,0.00027),(0.00180,0.00035,0.57795,0.00035)} {(0.00439,0.73753,0.00439,0.02247),(0.00561,0.70824,0.00561,0.02792)} {(0.05715,0.04267,0.00756,0.00745),(0.06329,0.04726,0.00954,0.00938)} {(0.74405,0.00247,0.01302,0.00247),(0.71436,0.00315,0.01624,0.00315)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.74405,0.00247,0.01302,0.00247),(0.71436,0.00315,0.01624,0.00315)} {(0.00110,0.00562,0.00110,0.61441),(0.00140,0.00698,0.00140,0.57460)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00219,0.06437,0.00219,0.11750),(0.00280,0.07031,0.00280,0.12666)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.74405,0.00247,0.01302,0.00247),(0.71436,0.00315,0.01624,0.00315)} {(0.74405,0.00247,0.01302,0.00247),(0.71436,0.00315,0.01624,0.00315)} {(0.00145,0.00027,0.61859,0.00027),(0.00180,0.00035,0.57795,0.00035)} ] + + + TEST alpha(ncats) = 100.00( 2), mode = MEDIAN 0.920322 1.079678 [8] P-matrix for branch length 0.100000 @@ -828,7 +1656,103 @@ [8] CLV 7: [ {(0.00428,0.74028,0.00428,0.02199),(0.00572,0.70568,0.00572,0.02843)} {(0.00142,0.00027,0.62243,0.00027),(0.00184,0.00036,0.57441,0.00036)} {(0.02828,0.00364,0.00369,0.03860),(0.03191,0.00478,0.00487,0.04288)} {(0.00428,0.74028,0.00428,0.02199),(0.00572,0.70568,0.00572,0.02843)} {(0.00107,0.00550,0.00107,0.61819),(0.00143,0.00711,0.00143,0.57115)} {(0.00107,0.00550,0.00107,0.61819),(0.00143,0.00711,0.00143,0.57115)} {(0.00142,0.00027,0.62243,0.00027),(0.00184,0.00036,0.57441,0.00036)} {(0.00428,0.74028,0.00428,0.02199),(0.00572,0.70568,0.00572,0.02843)} {(0.05657,0.04224,0.00739,0.00728),(0.06382,0.04766,0.00973,0.00957)} {(0.74682,0.00241,0.01274,0.00241),(0.71174,0.00322,0.01654,0.00322)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.74682,0.00241,0.01274,0.00241),(0.71174,0.00322,0.01654,0.00322)} {(0.00107,0.00550,0.00107,0.61819),(0.00143,0.00711,0.00143,0.57115)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00214,0.06380,0.00214,0.11660),(0.00286,0.07082,0.00286,0.12742)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.74682,0.00241,0.01274,0.00241),(0.71174,0.00322,0.01654,0.00322)} {(0.74682,0.00241,0.01274,0.00241),(0.71174,0.00322,0.01654,0.00322)} {(0.00142,0.00027,0.62243,0.00027),(0.00184,0.00036,0.57441,0.00036)} ] - TEST alpha(ncats) = 0.10( 4) + TEST alpha(ncats) = 0.10( 4), mode = MEAN + +0.000000 0.000689 0.114514 3.884798 +[0] P-matrix for branch length 0.100000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++0.9999 +0.0000 +0.0000 +0.0000 ++0.0000 +0.9999 +0.0000 +0.0000 ++0.0001 +0.0000 +0.9999 +0.0000 ++0.0000 +0.0001 +0.0000 +0.9999 + ++0.9906 +0.0044 +0.0027 +0.0022 ++0.0033 +0.9901 +0.0011 +0.0055 ++0.0082 +0.0044 +0.9851 +0.0022 ++0.0033 +0.0110 +0.0011 +0.9846 + ++0.7453 +0.1257 +0.0661 +0.0628 ++0.0943 +0.7457 +0.0314 +0.1286 ++0.1984 +0.1257 +0.6131 +0.0628 ++0.0943 +0.2573 +0.0314 +0.6170 + + +[0] P-matrix for branch length 0.200000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++0.9999 +0.0001 +0.0000 +0.0000 ++0.0000 +0.9999 +0.0000 +0.0001 ++0.0001 +0.0001 +0.9998 +0.0000 ++0.0000 +0.0001 +0.0000 +0.9998 + ++0.9814 +0.0088 +0.0054 +0.0044 ++0.0066 +0.9803 +0.0022 +0.0109 ++0.0163 +0.0088 +0.9705 +0.0044 ++0.0066 +0.0217 +0.0022 +0.9695 + ++0.5864 +0.2119 +0.0958 +0.1059 ++0.1589 +0.6049 +0.0530 +0.1832 ++0.2873 +0.2119 +0.3949 +0.1059 ++0.1589 +0.3664 +0.0530 +0.4217 + + +[0] P-matrix for branch length 1.000000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++0.9994 +0.0003 +0.0002 +0.0001 ++0.0002 +0.9994 +0.0001 +0.0003 ++0.0005 +0.0003 +0.9991 +0.0001 ++0.0002 +0.0007 +0.0001 +0.9991 + ++0.9119 +0.0421 +0.0250 +0.0210 ++0.0316 +0.9085 +0.0105 +0.0494 ++0.0749 +0.0421 +0.8620 +0.0210 ++0.0316 +0.0989 +0.0105 +0.8590 + ++0.3110 +0.3908 +0.1029 +0.1954 ++0.2931 +0.4064 +0.0977 +0.2028 ++0.3086 +0.3908 +0.1052 +0.1954 ++0.2931 +0.4056 +0.0977 +0.2036 + + +[0] P-matrix for branch length 1.000000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++0.9994 +0.0003 +0.0002 +0.0001 ++0.0002 +0.9994 +0.0001 +0.0003 ++0.0005 +0.0003 +0.9991 +0.0001 ++0.0002 +0.0007 +0.0001 +0.9991 + ++0.9119 +0.0421 +0.0250 +0.0210 ++0.0316 +0.9085 +0.0105 +0.0494 ++0.0749 +0.0421 +0.8620 +0.0210 ++0.0316 +0.0989 +0.0105 +0.8590 + ++0.3110 +0.3908 +0.1029 +0.1954 ++0.2931 +0.4064 +0.0977 +0.2028 ++0.3086 +0.3908 +0.1052 +0.1954 ++0.2931 +0.4056 +0.0977 +0.2036 + + +[0] CLV 5: [ {(0.00000,0.00000,0.00000,0.00000),(0.00005,0.00011,0.00000,0.00013),(0.00867,0.01711,0.00018,0.02120),(0.14669,0.20695,0.08332,0.21274)} {(1.00000,0.00000,0.00000,0.00000),(0.99977,0.00000,0.00000,0.00000),(0.96308,0.00004,0.00027,0.00004),(0.34389,0.02525,0.08255,0.02525)} {(0.00000,0.00000,0.00000,0.00000),(0.00005,0.00004,0.00000,0.00000),(0.00863,0.00647,0.00014,0.00014),(0.12425,0.09613,0.06087,0.05822)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99976,0.00000,0.00000),(0.00008,0.96108,0.00008,0.00047),(0.04489,0.36594,0.04489,0.13425)} {(0.00000,0.00000,0.00000,0.00000),(0.00003,0.00000,0.00000,0.00004),(0.00432,0.00007,0.00007,0.00640),(0.06212,0.02911,0.03044,0.06701)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00007,0.00000,0.00013),(0.00004,0.01064,0.00004,0.02105),(0.02244,0.11082,0.02244,0.15452)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99964,0.00000),(0.00003,0.00000,0.94185,0.00000),(0.00917,0.00281,0.15593,0.00281)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99976,0.00000,0.00000),(0.00008,0.96108,0.00008,0.00047),(0.04489,0.36594,0.04489,0.13425)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99963),(0.00002,0.00012,0.00002,0.93991),(0.01122,0.03356,0.01122,0.17786)} {(1.00000,0.00000,0.00000,0.00000),(0.99977,0.00000,0.00000,0.00000),(0.96308,0.00004,0.00027,0.00004),(0.34389,0.02525,0.08255,0.02525)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,0.00000,0.00000,0.00000),(0.99977,0.00000,0.00000,0.00000),(0.96308,0.00004,0.00027,0.00004),(0.34389,0.02525,0.08255,0.02525)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99963),(0.00002,0.00012,0.00002,0.93991),(0.01122,0.03356,0.01122,0.17786)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99963),(0.00002,0.00012,0.00002,0.93991),(0.01122,0.03356,0.01122,0.17786)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00001,0.00005,0.00000),(0.00005,0.00216,0.00854,0.00005),(0.02029,0.03204,0.08366,0.01941)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99963),(0.00002,0.00012,0.00002,0.93991),(0.01122,0.03356,0.01122,0.17786)} {(0.00000,0.00000,0.00000,0.00000),(0.00005,0.00004,0.00000,0.00000),(0.00863,0.00647,0.00014,0.00014),(0.12425,0.09613,0.06087,0.05822)} {(0.00000,0.00000,0.00000,0.00000),(0.00003,0.00000,0.00000,0.00004),(0.00432,0.00007,0.00007,0.00640),(0.06212,0.02911,0.03044,0.06701)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99963),(0.00002,0.00012,0.00002,0.93991),(0.01122,0.03356,0.01122,0.17786)} ] +[0] CLV 6: [ {(0.00000,0.00000,0.00000,0.00000),(0.00005,0.00000,0.00000,0.00000),(0.00855,0.00011,0.00001,0.00014),(0.09044,0.03148,0.03435,0.03193)} {(0.00000,0.00000,0.00000,0.00000),(0.00003,0.00000,0.00005,0.00000),(0.00519,0.00001,0.00796,0.00001),(0.02553,0.00302,0.04881,0.00302)} {(0.00000,0.00000,0.00000,0.00000),(0.00005,0.00004,0.00000,0.00000),(0.00858,0.00643,0.00024,0.00024),(0.11237,0.09279,0.07771,0.07428)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99958,0.00000,0.00000),(0.00004,0.93285,0.00004,0.00024),(0.01925,0.17893,0.01925,0.06691)} {(0.00000,0.00000,0.00000,0.00000),(0.00003,0.00000,0.00000,0.00004),(0.00429,0.00012,0.00012,0.00631),(0.05619,0.03714,0.03886,0.05565)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00013),(0.00000,0.00012,0.00000,0.02021),(0.00443,0.01930,0.00443,0.05343)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99937,0.00000),(0.00001,0.00000,0.90045,0.00000),(0.00169,0.00044,0.03868,0.00044)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99958,0.00000,0.00000),(0.00004,0.93285,0.00004,0.00024),(0.01925,0.17893,0.01925,0.06691)} {(0.00000,0.00000,0.00000,0.00000),(0.00001,0.00000,0.00000,0.00004),(0.00206,0.00003,0.00003,0.00611),(0.01437,0.00784,0.00704,0.01904)} {(0.00000,0.00000,0.00000,0.00000),(0.00003,0.00000,0.00005,0.00000),(0.00519,0.00001,0.00796,0.00001),(0.02553,0.00302,0.04881,0.00302)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00000,0.00000,0.00000),(0.00005,0.00002,0.00000,0.00000),(0.00839,0.00317,0.00007,0.00007),(0.05647,0.03453,0.02619,0.02092)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99934),(0.00001,0.00006,0.00001,0.89719),(0.00260,0.00903,0.00260,0.05052)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99934),(0.00001,0.00006,0.00001,0.89719),(0.00260,0.00903,0.00260,0.05052)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00001,0.00000,0.00000),(0.00000,0.00210,0.00007,0.00000),(0.00549,0.01871,0.01283,0.00907)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99934),(0.00001,0.00006,0.00001,0.89719),(0.00260,0.00903,0.00260,0.05052)} {(0.00000,0.00000,0.00000,0.00000),(0.00005,0.00000,0.00000,0.00000),(0.00842,0.00004,0.00000,0.00000),(0.06590,0.01474,0.02233,0.01180)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00004,0.00012,0.00000,0.00014),(0.01190,0.02247,0.00823,0.02039)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99934),(0.00001,0.00006,0.00001,0.89719),(0.00260,0.00903,0.00260,0.05052)} ] +[0] CLV 7: [ {(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99976,0.00000,0.00000),(0.00008,0.96108,0.00008,0.00047),(0.04489,0.36594,0.04489,0.13425)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99964,0.00000),(0.00003,0.00000,0.94185,0.00000),(0.00917,0.00281,0.15593,0.00281)} {(0.00000,0.00000,0.00000,0.00000),(0.00003,0.00000,0.00000,0.00004),(0.00432,0.00007,0.00007,0.00640),(0.06212,0.02911,0.03044,0.06701)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99976,0.00000,0.00000),(0.00008,0.96108,0.00008,0.00047),(0.04489,0.36594,0.04489,0.13425)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99963),(0.00002,0.00012,0.00002,0.93991),(0.01122,0.03356,0.01122,0.17786)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99963),(0.00002,0.00012,0.00002,0.93991),(0.01122,0.03356,0.01122,0.17786)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99964,0.00000),(0.00003,0.00000,0.94185,0.00000),(0.00917,0.00281,0.15593,0.00281)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99976,0.00000,0.00000),(0.00008,0.96108,0.00008,0.00047),(0.04489,0.36594,0.04489,0.13425)} {(0.00000,0.00000,0.00000,0.00000),(0.00005,0.00004,0.00000,0.00000),(0.00863,0.00647,0.00014,0.00014),(0.12425,0.09613,0.06087,0.05822)} {(1.00000,0.00000,0.00000,0.00000),(0.99977,0.00000,0.00000,0.00000),(0.96308,0.00004,0.00027,0.00004),(0.34389,0.02525,0.08255,0.02525)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,0.00000,0.00000,0.00000),(0.99977,0.00000,0.00000,0.00000),(0.96308,0.00004,0.00027,0.00004),(0.34389,0.02525,0.08255,0.02525)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99963),(0.00002,0.00012,0.00002,0.93991),(0.01122,0.03356,0.01122,0.17786)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00007,0.00000,0.00013),(0.00004,0.01064,0.00004,0.02105),(0.02244,0.11082,0.02244,0.15452)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,0.00000,0.00000,0.00000),(0.99977,0.00000,0.00000,0.00000),(0.96308,0.00004,0.00027,0.00004),(0.34389,0.02525,0.08255,0.02525)} {(1.00000,0.00000,0.00000,0.00000),(0.99977,0.00000,0.00000,0.00000),(0.96308,0.00004,0.00027,0.00004),(0.34389,0.02525,0.08255,0.02525)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99964,0.00000),(0.00003,0.00000,0.94185,0.00000),(0.00917,0.00281,0.15593,0.00281)} ] + + + TEST alpha(ncats) = 0.10( 4), mode = MEDIAN 0.000001 0.001078 0.093753 3.905168 [0] P-matrix for branch length 0.100000 @@ -924,7 +1848,103 @@ [0] CLV 7: [ {(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99962,0.00000,0.00000),(0.00005,0.96797,0.00005,0.00032),(0.04520,0.36463,0.04520,0.13476)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99943,0.00000),(0.00002,0.00000,0.95211,0.00000),(0.00921,0.00283,0.15460,0.00283)} {(0.00000,0.00000,0.00000,0.00000),(0.00004,0.00000,0.00000,0.00006),(0.00355,0.00005,0.00005,0.00528),(0.06220,0.02927,0.03060,0.06702)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99962,0.00000,0.00000),(0.00005,0.96797,0.00005,0.00032),(0.04520,0.36463,0.04520,0.13476)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99941),(0.00001,0.00008,0.00001,0.95049),(0.01130,0.03369,0.01130,0.17665)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99941),(0.00001,0.00008,0.00001,0.95049),(0.01130,0.03369,0.01130,0.17665)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99943,0.00000),(0.00002,0.00000,0.95211,0.00000),(0.00921,0.00283,0.15460,0.00283)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99962,0.00000,0.00000),(0.00005,0.96797,0.00005,0.00032),(0.04520,0.36463,0.04520,0.13476)} {(0.00000,0.00000,0.00000,0.00000),(0.00008,0.00006,0.00000,0.00000),(0.00711,0.00532,0.00010,0.00010),(0.12440,0.09629,0.06121,0.05854)} {(1.00000,0.00000,0.00000,0.00000),(0.99964,0.00000,0.00000,0.00000),(0.96964,0.00003,0.00018,0.00003),(0.34236,0.02543,0.08288,0.02543)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,0.00000,0.00000,0.00000),(0.99964,0.00000,0.00000,0.00000),(0.96964,0.00003,0.00018,0.00003),(0.34236,0.02543,0.08288,0.02543)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99941),(0.00001,0.00008,0.00001,0.95049),(0.01130,0.03369,0.01130,0.17665)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00010,0.00000,0.00021),(0.00003,0.00878,0.00003,0.01741),(0.02260,0.11083,0.02260,0.15429)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,0.00000,0.00000,0.00000),(0.99964,0.00000,0.00000,0.00000),(0.96964,0.00003,0.00018,0.00003),(0.34236,0.02543,0.08288,0.02543)} {(1.00000,0.00000,0.00000,0.00000),(0.99964,0.00000,0.00000,0.00000),(0.96964,0.00003,0.00018,0.00003),(0.34236,0.02543,0.08288,0.02543)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99943,0.00000),(0.00002,0.00000,0.95211,0.00000),(0.00921,0.00283,0.15460,0.00283)} ] - TEST alpha(ncats) = 0.50( 4) + TEST alpha(ncats) = 0.50( 4), mode = MEAN + +0.029078 0.280715 0.924773 2.765435 +[1] P-matrix for branch length 0.100000 ++0.9976 +0.0011 +0.0007 +0.0006 ++0.0008 +0.9975 +0.0003 +0.0014 ++0.0021 +0.0011 +0.9962 +0.0006 ++0.0008 +0.0028 +0.0003 +0.9961 + ++0.9772 +0.0108 +0.0066 +0.0054 ++0.0081 +0.9760 +0.0027 +0.0132 ++0.0199 +0.0108 +0.9640 +0.0054 ++0.0081 +0.0265 +0.0027 +0.9628 + ++0.9279 +0.0343 +0.0206 +0.0172 ++0.0258 +0.9248 +0.0086 +0.0408 ++0.0617 +0.0343 +0.8868 +0.0172 ++0.0258 +0.0817 +0.0086 +0.8840 + ++0.8067 +0.0942 +0.0520 +0.0471 ++0.0706 +0.8040 +0.0235 +0.1018 ++0.1560 +0.0942 +0.7028 +0.0471 ++0.0706 +0.2036 +0.0235 +0.7022 + + +[1] P-matrix for branch length 0.200000 ++0.9952 +0.0023 +0.0014 +0.0011 ++0.0017 +0.9949 +0.0006 +0.0028 ++0.0042 +0.0023 +0.9924 +0.0011 ++0.0017 +0.0056 +0.0006 +0.9921 + ++0.9552 +0.0212 +0.0129 +0.0106 ++0.0159 +0.9531 +0.0053 +0.0257 ++0.0388 +0.0212 +0.9294 +0.0106 ++0.0159 +0.0514 +0.0053 +0.9273 + ++0.8636 +0.0657 +0.0378 +0.0329 ++0.0493 +0.8598 +0.0164 +0.0744 ++0.1133 +0.0657 +0.7881 +0.0329 ++0.0493 +0.1489 +0.0164 +0.7854 + ++0.6689 +0.1662 +0.0818 +0.0831 ++0.1246 +0.6760 +0.0415 +0.1578 ++0.2454 +0.1662 +0.5053 +0.0831 ++0.1246 +0.3155 +0.0415 +0.5183 + + +[1] P-matrix for branch length 1.000000 ++0.9764 +0.0111 +0.0069 +0.0056 ++0.0084 +0.9752 +0.0028 +0.0137 ++0.0206 +0.0111 +0.9627 +0.0056 ++0.0084 +0.0274 +0.0028 +0.9615 + ++0.8043 +0.0954 +0.0526 +0.0477 ++0.0716 +0.8017 +0.0239 +0.1029 ++0.1577 +0.0954 +0.6992 +0.0477 ++0.0716 +0.2058 +0.0239 +0.6987 + ++0.5428 +0.2370 +0.1017 +0.1185 ++0.1778 +0.5692 +0.0593 +0.1938 ++0.3050 +0.2370 +0.3394 +0.1185 ++0.1778 +0.3876 +0.0593 +0.3754 + ++0.3341 +0.3727 +0.1068 +0.1864 ++0.2795 +0.4202 +0.0932 +0.2071 ++0.3205 +0.3727 +0.1205 +0.1864 ++0.2795 +0.4141 +0.0932 +0.2132 + + +[1] P-matrix for branch length 1.000000 ++0.9764 +0.0111 +0.0069 +0.0056 ++0.0084 +0.9752 +0.0028 +0.0137 ++0.0206 +0.0111 +0.9627 +0.0056 ++0.0084 +0.0274 +0.0028 +0.9615 + ++0.8043 +0.0954 +0.0526 +0.0477 ++0.0716 +0.8017 +0.0239 +0.1029 ++0.1577 +0.0954 +0.6992 +0.0477 ++0.0716 +0.2058 +0.0239 +0.6987 + ++0.5428 +0.2370 +0.1017 +0.1185 ++0.1778 +0.5692 +0.0593 +0.1938 ++0.3050 +0.2370 +0.3394 +0.1185 ++0.1778 +0.3876 +0.0593 +0.3754 + ++0.3341 +0.3727 +0.1068 +0.1864 ++0.2795 +0.4202 +0.0932 +0.2071 ++0.3205 +0.3727 +0.1205 +0.1864 ++0.2795 +0.4141 +0.0932 +0.2132 + + +[1] CLV 5: [ {(0.00224,0.00447,0.00001,0.00558),(0.02050,0.03968,0.00105,0.04852),(0.05894,0.10640,0.00961,0.12427),(0.12498,0.19092,0.05459,0.20286)} {(0.99046,0.00000,0.00002,0.00000),(0.91250,0.00025,0.00150,0.00025),(0.74581,0.00243,0.01284,0.00243),(0.44744,0.01554,0.06022,0.01554)} {(0.00224,0.00168,0.00001,0.00001),(0.02027,0.01517,0.00082,0.00082),(0.05678,0.04240,0.00745,0.00734),(0.11117,0.08427,0.04078,0.03933)} {(0.00001,0.98991,0.00001,0.00003),(0.00045,0.90832,0.00045,0.00265),(0.00432,0.73928,0.00432,0.02217),(0.02762,0.45703,0.02762,0.09956)} {(0.00112,0.00000,0.00000,0.00168),(0.01013,0.00041,0.00041,0.01476),(0.02839,0.00367,0.00373,0.03873),(0.05558,0.01967,0.02039,0.06460)} {(0.00000,0.00279,0.00000,0.00557),(0.00023,0.02451,0.00023,0.04770),(0.00216,0.06400,0.00216,0.11693),(0.01381,0.10666,0.01381,0.16353)} {(0.00000,0.00000,0.98488,0.00000),(0.00017,0.00003,0.86379,0.00003),(0.00143,0.00027,0.62103,0.00027),(0.00669,0.00173,0.25534,0.00173)} {(0.00001,0.98991,0.00001,0.00003),(0.00045,0.90832,0.00045,0.00265),(0.00432,0.73928,0.00432,0.02217),(0.02762,0.45703,0.02762,0.09956)} {(0.00000,0.00001,0.00000,0.98433),(0.00011,0.00066,0.00011,0.85996),(0.00108,0.00554,0.00108,0.61681),(0.00691,0.02489,0.00691,0.26860)} {(0.99046,0.00000,0.00002,0.00000),(0.91250,0.00025,0.00150,0.00025),(0.74581,0.00243,0.01284,0.00243),(0.44744,0.01554,0.06022,0.01554)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99046,0.00000,0.00002,0.00000),(0.91250,0.00025,0.00150,0.00025),(0.74581,0.00243,0.01284,0.00243),(0.44744,0.01554,0.06022,0.01554)} {(0.00000,0.00001,0.00000,0.98433),(0.00011,0.00066,0.00011,0.85996),(0.00108,0.00554,0.00108,0.61681),(0.00691,0.02489,0.00691,0.26860)} {(0.00000,0.00001,0.00000,0.98433),(0.00011,0.00066,0.00011,0.85996),(0.00108,0.00554,0.00108,0.61681),(0.00691,0.02489,0.00691,0.26860)} {(0.00000,0.00056,0.00224,0.00000),(0.00027,0.00506,0.01972,0.00027),(0.00248,0.01413,0.05181,0.00245),(0.01359,0.02809,0.08398,0.01311)} {(0.00000,0.00001,0.00000,0.98433),(0.00011,0.00066,0.00011,0.85996),(0.00108,0.00554,0.00108,0.61681),(0.00691,0.02489,0.00691,0.26860)} {(0.00224,0.00168,0.00001,0.00001),(0.02027,0.01517,0.00082,0.00082),(0.05678,0.04240,0.00745,0.00734),(0.11117,0.08427,0.04078,0.03933)} {(0.00112,0.00000,0.00000,0.00168),(0.01013,0.00041,0.00041,0.01476),(0.02839,0.00367,0.00373,0.03873),(0.05558,0.01967,0.02039,0.06460)} {(0.00000,0.00001,0.00000,0.98433),(0.00011,0.00066,0.00011,0.85996),(0.00108,0.00554,0.00108,0.61681),(0.00691,0.02489,0.00691,0.26860)} ] +[1] CLV 6: [ {(0.00224,0.00001,0.00000,0.00001),(0.01980,0.00063,0.00008,0.00076),(0.05240,0.00518,0.00203,0.00592),(0.08776,0.02297,0.02096,0.02386)} {(0.00139,0.00000,0.00209,0.00000),(0.01152,0.00004,0.01823,0.00004),(0.02616,0.00036,0.04535,0.00036),(0.02996,0.00196,0.05775,0.00196)} {(0.00224,0.00168,0.00002,0.00002),(0.01998,0.01498,0.00136,0.00136),(0.05442,0.04104,0.01169,0.01148),(0.10159,0.08057,0.05579,0.05359)} {(0.00000,0.98241,0.00000,0.00002),(0.00022,0.84495,0.00022,0.00137),(0.00196,0.58876,0.00196,0.01193),(0.01188,0.25702,0.01188,0.05224)} {(0.00112,0.00001,0.00001,0.00167),(0.00999,0.00068,0.00068,0.01430),(0.02721,0.00574,0.00585,0.03530),(0.05080,0.02679,0.02789,0.05377)} {(0.00000,0.00001,0.00000,0.00551),(0.00001,0.00063,0.00001,0.04319),(0.00021,0.00477,0.00021,0.08534),(0.00246,0.01636,0.00246,0.07144)} {(0.00000,0.00000,0.97369,0.00000),(0.00008,0.00001,0.77389,0.00001),(0.00053,0.00009,0.43407,0.00009),(0.00155,0.00033,0.09133,0.00033)} {(0.00000,0.98241,0.00000,0.00002),(0.00022,0.84495,0.00022,0.00137),(0.00196,0.58876,0.00196,0.01193),(0.01188,0.25702,0.01188,0.05224)} {(0.00055,0.00000,0.00000,0.00166),(0.00453,0.00019,0.00018,0.01318),(0.01020,0.00150,0.00134,0.02691),(0.01400,0.00598,0.00513,0.02422)} {(0.00139,0.00000,0.00209,0.00000),(0.01152,0.00004,0.01823,0.00004),(0.02616,0.00036,0.04535,0.00036),(0.02996,0.00196,0.05775,0.00196)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00223,0.00084,0.00000,0.00000),(0.01892,0.00726,0.00042,0.00039),(0.04553,0.01863,0.00378,0.00323),(0.06088,0.03184,0.01900,0.01486)} {(0.00000,0.00000,0.00000,0.97274),(0.00005,0.00031,0.00005,0.76780),(0.00039,0.00226,0.00039,0.42861),(0.00174,0.00757,0.00174,0.10072)} {(0.00000,0.00000,0.00000,0.97274),(0.00005,0.00031,0.00005,0.76780),(0.00039,0.00226,0.00039,0.42861),(0.00174,0.00757,0.00174,0.10072)} {(0.00000,0.00056,0.00001,0.00000),(0.00001,0.00476,0.00040,0.00002),(0.00026,0.01176,0.00307,0.00057),(0.00309,0.01816,0.01070,0.00564)} {(0.00000,0.00000,0.00000,0.97274),(0.00005,0.00031,0.00005,0.76780),(0.00039,0.00226,0.00039,0.42861),(0.00174,0.00757,0.00174,0.10072)} {(0.00223,0.00000,0.00000,0.00000),(0.01909,0.00024,0.00005,0.00002),(0.04700,0.00202,0.00133,0.00057),(0.06796,0.01004,0.01369,0.00668)} {(0.00000,0.00001,0.00000,0.00001),(0.00021,0.00065,0.00001,0.00074),(0.00179,0.00493,0.00038,0.00526),(0.00844,0.01811,0.00464,0.01697)} {(0.00000,0.00000,0.00000,0.97274),(0.00005,0.00031,0.00005,0.76780),(0.00039,0.00226,0.00039,0.42861),(0.00174,0.00757,0.00174,0.10072)} ] +[1] CLV 7: [ {(0.00001,0.98991,0.00001,0.00003),(0.00045,0.90832,0.00045,0.00265),(0.00432,0.73928,0.00432,0.02217),(0.02762,0.45703,0.02762,0.09956)} {(0.00000,0.00000,0.98488,0.00000),(0.00017,0.00003,0.86379,0.00003),(0.00143,0.00027,0.62103,0.00027),(0.00669,0.00173,0.25534,0.00173)} {(0.00112,0.00000,0.00000,0.00168),(0.01013,0.00041,0.00041,0.01476),(0.02839,0.00367,0.00373,0.03873),(0.05558,0.01967,0.02039,0.06460)} {(0.00001,0.98991,0.00001,0.00003),(0.00045,0.90832,0.00045,0.00265),(0.00432,0.73928,0.00432,0.02217),(0.02762,0.45703,0.02762,0.09956)} {(0.00000,0.00001,0.00000,0.98433),(0.00011,0.00066,0.00011,0.85996),(0.00108,0.00554,0.00108,0.61681),(0.00691,0.02489,0.00691,0.26860)} {(0.00000,0.00001,0.00000,0.98433),(0.00011,0.00066,0.00011,0.85996),(0.00108,0.00554,0.00108,0.61681),(0.00691,0.02489,0.00691,0.26860)} {(0.00000,0.00000,0.98488,0.00000),(0.00017,0.00003,0.86379,0.00003),(0.00143,0.00027,0.62103,0.00027),(0.00669,0.00173,0.25534,0.00173)} {(0.00001,0.98991,0.00001,0.00003),(0.00045,0.90832,0.00045,0.00265),(0.00432,0.73928,0.00432,0.02217),(0.02762,0.45703,0.02762,0.09956)} {(0.00224,0.00168,0.00001,0.00001),(0.02027,0.01517,0.00082,0.00082),(0.05678,0.04240,0.00745,0.00734),(0.11117,0.08427,0.04078,0.03933)} {(0.99046,0.00000,0.00002,0.00000),(0.91250,0.00025,0.00150,0.00025),(0.74581,0.00243,0.01284,0.00243),(0.44744,0.01554,0.06022,0.01554)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99046,0.00000,0.00002,0.00000),(0.91250,0.00025,0.00150,0.00025),(0.74581,0.00243,0.01284,0.00243),(0.44744,0.01554,0.06022,0.01554)} {(0.00000,0.00001,0.00000,0.98433),(0.00011,0.00066,0.00011,0.85996),(0.00108,0.00554,0.00108,0.61681),(0.00691,0.02489,0.00691,0.26860)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00279,0.00000,0.00557),(0.00023,0.02451,0.00023,0.04770),(0.00216,0.06400,0.00216,0.11693),(0.01381,0.10666,0.01381,0.16353)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99046,0.00000,0.00002,0.00000),(0.91250,0.00025,0.00150,0.00025),(0.74581,0.00243,0.01284,0.00243),(0.44744,0.01554,0.06022,0.01554)} {(0.99046,0.00000,0.00002,0.00000),(0.91250,0.00025,0.00150,0.00025),(0.74581,0.00243,0.01284,0.00243),(0.44744,0.01554,0.06022,0.01554)} {(0.00000,0.00000,0.98488,0.00000),(0.00017,0.00003,0.86379,0.00003),(0.00143,0.00027,0.62103,0.00027),(0.00669,0.00173,0.25534,0.00173)} ] + + + TEST alpha(ncats) = 0.50( 4), mode = MEDIAN 0.033388 0.251916 0.820268 2.894428 [1] P-matrix for branch length 0.100000 @@ -1020,7 +2040,103 @@ [1] CLV 7: [ {(0.00001,0.98843,0.00001,0.00004),(0.00036,0.91716,0.00036,0.00216),(0.00347,0.76334,0.00347,0.01818),(0.02958,0.44435,0.02958,0.10423)} {(0.00000,0.00000,0.98266,0.00000),(0.00014,0.00002,0.87680,0.00002),(0.00117,0.00022,0.65480,0.00022),(0.00702,0.00185,0.24075,0.00185)} {(0.00129,0.00001,0.00001,0.00192),(0.00916,0.00033,0.00033,0.01338),(0.02584,0.00298,0.00302,0.03561),(0.05660,0.02082,0.02161,0.06516)} {(0.00001,0.98843,0.00001,0.00004),(0.00036,0.91716,0.00036,0.00216),(0.00347,0.76334,0.00347,0.01818),(0.02958,0.44435,0.02958,0.10423)} {(0.00000,0.00001,0.00000,0.98204),(0.00009,0.00054,0.00009,0.87323),(0.00087,0.00454,0.00087,0.65010),(0.00739,0.02606,0.00739,0.25520)} {(0.00000,0.00001,0.00000,0.98204),(0.00009,0.00054,0.00009,0.87323),(0.00087,0.00454,0.00087,0.65010),(0.00739,0.02606,0.00739,0.25520)} {(0.00000,0.00000,0.98266,0.00000),(0.00014,0.00002,0.87680,0.00002),(0.00117,0.00022,0.65480,0.00022),(0.00702,0.00185,0.24075,0.00185)} {(0.00001,0.98843,0.00001,0.00004),(0.00036,0.91716,0.00036,0.00216),(0.00347,0.76334,0.00347,0.01818),(0.02958,0.44435,0.02958,0.10423)} {(0.00257,0.00193,0.00001,0.00001),(0.01833,0.01372,0.00067,0.00067),(0.05168,0.03859,0.00603,0.00596),(0.11320,0.08598,0.04323,0.04164)} {(0.98905,0.00000,0.00002,0.00000),(0.92102,0.00021,0.00122,0.00021),(0.77001,0.00195,0.01050,0.00195),(0.43328,0.01664,0.06318,0.01664)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.98905,0.00000,0.00002,0.00000),(0.92102,0.00021,0.00122,0.00021),(0.77001,0.00195,0.01050,0.00195),(0.43328,0.01664,0.06318,0.01664)} {(0.00000,0.00001,0.00000,0.98204),(0.00009,0.00054,0.00009,0.87323),(0.00087,0.00454,0.00087,0.65010),(0.00739,0.02606,0.00739,0.25520)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00320,0.00000,0.00638),(0.00018,0.02224,0.00018,0.04339),(0.00173,0.05890,0.00173,0.10870),(0.01479,0.10761,0.01479,0.16309)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.98905,0.00000,0.00002,0.00000),(0.92102,0.00021,0.00122,0.00021),(0.77001,0.00195,0.01050,0.00195),(0.43328,0.01664,0.06318,0.01664)} {(0.98905,0.00000,0.00002,0.00000),(0.92102,0.00021,0.00122,0.00021),(0.77001,0.00195,0.01050,0.00195),(0.43328,0.01664,0.06318,0.01664)} {(0.00000,0.00000,0.98266,0.00000),(0.00014,0.00002,0.87680,0.00002),(0.00117,0.00022,0.65480,0.00022),(0.00702,0.00185,0.24075,0.00185)} ] - TEST alpha(ncats) = 0.75( 4) + TEST alpha(ncats) = 0.75( 4), mode = MEAN + +0.086183 0.422136 1.028093 2.463588 +[2] P-matrix for branch length 0.100000 ++0.9929 +0.0033 +0.0021 +0.0017 ++0.0025 +0.9925 +0.0008 +0.0041 ++0.0062 +0.0033 +0.9888 +0.0017 ++0.0025 +0.0083 +0.0008 +0.9884 + ++0.9661 +0.0161 +0.0098 +0.0080 ++0.0120 +0.9643 +0.0040 +0.0196 ++0.0295 +0.0161 +0.9464 +0.0080 ++0.0120 +0.0392 +0.0040 +0.9447 + ++0.9204 +0.0380 +0.0227 +0.0190 ++0.0285 +0.9171 +0.0095 +0.0449 ++0.0680 +0.0380 +0.8750 +0.0190 ++0.0285 +0.0898 +0.0095 +0.8722 + ++0.8248 +0.0851 +0.0476 +0.0425 ++0.0638 +0.8215 +0.0213 +0.0934 ++0.1428 +0.0851 +0.7296 +0.0425 ++0.0638 +0.1867 +0.0213 +0.7282 + + +[2] P-matrix for branch length 0.200000 ++0.9859 +0.0066 +0.0041 +0.0033 ++0.0050 +0.9851 +0.0017 +0.0082 ++0.0123 +0.0066 +0.9777 +0.0033 ++0.0050 +0.0164 +0.0017 +0.9769 + ++0.9339 +0.0315 +0.0189 +0.0157 ++0.0236 +0.9309 +0.0079 +0.0376 ++0.0568 +0.0315 +0.8960 +0.0157 ++0.0236 +0.0752 +0.0079 +0.8934 + ++0.8502 +0.0724 +0.0412 +0.0362 ++0.0543 +0.8465 +0.0181 +0.0811 ++0.1236 +0.0724 +0.7678 +0.0362 ++0.0543 +0.1622 +0.0181 +0.7654 + ++0.6952 +0.1521 +0.0767 +0.0760 ++0.1141 +0.6996 +0.0380 +0.1483 ++0.2300 +0.1521 +0.5418 +0.0760 ++0.1141 +0.2966 +0.0380 +0.5513 + + +[2] P-matrix for branch length 1.000000 ++0.9326 +0.0321 +0.0193 +0.0161 ++0.0241 +0.9296 +0.0080 +0.0383 ++0.0579 +0.0321 +0.8940 +0.0161 ++0.0241 +0.0766 +0.0080 +0.8913 + ++0.7285 +0.1345 +0.0698 +0.0672 ++0.1009 +0.7300 +0.0336 +0.1355 ++0.2094 +0.1345 +0.5889 +0.0672 ++0.1009 +0.2710 +0.0336 +0.5945 + ++0.5165 +0.2526 +0.1047 +0.1263 ++0.1894 +0.5483 +0.0631 +0.1991 ++0.3140 +0.2526 +0.3072 +0.1263 ++0.1894 +0.3982 +0.0631 +0.3492 + ++0.3466 +0.3634 +0.1083 +0.1817 ++0.2726 +0.4279 +0.0909 +0.2087 ++0.3248 +0.3634 +0.1301 +0.1817 ++0.2726 +0.4173 +0.0909 +0.2193 + + +[2] P-matrix for branch length 1.000000 ++0.9326 +0.0321 +0.0193 +0.0161 ++0.0241 +0.9296 +0.0080 +0.0383 ++0.0579 +0.0321 +0.8940 +0.0161 ++0.0241 +0.0766 +0.0080 +0.8913 + ++0.7285 +0.1345 +0.0698 +0.0672 ++0.1009 +0.7300 +0.0336 +0.1355 ++0.2094 +0.1345 +0.5889 +0.0672 ++0.1009 +0.2710 +0.0336 +0.5945 + ++0.5165 +0.2526 +0.1047 +0.1263 ++0.1894 +0.5483 +0.0631 +0.1991 ++0.3140 +0.2526 +0.3072 +0.1263 ++0.1894 +0.3982 +0.0631 +0.3492 + ++0.3466 +0.3634 +0.1083 +0.1817 ++0.2726 +0.4279 +0.0909 +0.2087 ++0.3248 +0.3634 +0.1301 +0.1817 ++0.2726 +0.4173 +0.0909 +0.2193 + + +[2] CLV 5: [ {(0.00657,0.01300,0.00010,0.01614),(0.02989,0.05696,0.00228,0.06892),(0.06416,0.11460,0.01157,0.13294),(0.11729,0.18356,0.04655,0.19736)} {(0.97205,0.00002,0.00015,0.00002),(0.87209,0.00056,0.00322,0.00056),(0.72286,0.00295,0.01528,0.00295),(0.48330,0.01301,0.05292,0.01301)} {(0.00654,0.00490,0.00008,0.00008),(0.02940,0.02198,0.00179,0.00177),(0.06154,0.04596,0.00895,0.00880),(0.10573,0.07980,0.03499,0.03383)} {(0.00004,0.97051,0.00004,0.00027),(0.00099,0.86665,0.00099,0.00565),(0.00524,0.71660,0.00524,0.02630),(0.02313,0.48944,0.02313,0.08799)} {(0.00327,0.00004,0.00004,0.00486),(0.01470,0.00089,0.00089,0.02109),(0.03077,0.00440,0.00447,0.04156),(0.05286,0.01692,0.01749,0.06288)} {(0.00002,0.00810,0.00002,0.01606),(0.00050,0.03498,0.00050,0.06714),(0.00262,0.06864,0.00262,0.12414),(0.01156,0.10376,0.01156,0.16353)} {(0.00002,0.00000,0.95589,0.00000),(0.00036,0.00006,0.80283,0.00006),(0.00170,0.00033,0.58950,0.00033),(0.00588,0.00145,0.29358,0.00145)} {(0.00004,0.97051,0.00004,0.00027),(0.00099,0.86665,0.00099,0.00565),(0.00524,0.71660,0.00524,0.02630),(0.02313,0.48944,0.02313,0.08799)} {(0.00001,0.00007,0.00001,0.95438),(0.00025,0.00141,0.00025,0.79809),(0.00131,0.00658,0.00131,0.58589),(0.00578,0.02200,0.00578,0.30392)} {(0.97205,0.00002,0.00015,0.00002),(0.87209,0.00056,0.00322,0.00056),(0.72286,0.00295,0.01528,0.00295),(0.48330,0.01301,0.05292,0.01301)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.97205,0.00002,0.00015,0.00002),(0.87209,0.00056,0.00322,0.00056),(0.72286,0.00295,0.01528,0.00295),(0.48330,0.01301,0.05292,0.01301)} {(0.00001,0.00007,0.00001,0.95438),(0.00025,0.00141,0.00025,0.79809),(0.00131,0.00658,0.00131,0.58589),(0.00578,0.02200,0.00578,0.30392)} {(0.00001,0.00007,0.00001,0.95438),(0.00025,0.00141,0.00025,0.79809),(0.00131,0.00658,0.00131,0.58589),(0.00578,0.02200,0.00578,0.30392)} {(0.00003,0.00163,0.00649,0.00003),(0.00060,0.00733,0.02821,0.00059),(0.00298,0.01532,0.05558,0.00293),(0.01166,0.02660,0.08240,0.01128)} {(0.00001,0.00007,0.00001,0.95438),(0.00025,0.00141,0.00025,0.79809),(0.00131,0.00658,0.00131,0.58589),(0.00578,0.02200,0.00578,0.30392)} {(0.00654,0.00490,0.00008,0.00008),(0.02940,0.02198,0.00179,0.00177),(0.06154,0.04596,0.00895,0.00880),(0.10573,0.07980,0.03499,0.03383)} {(0.00327,0.00004,0.00004,0.00486),(0.01470,0.00089,0.00089,0.02109),(0.03077,0.00440,0.00447,0.04156),(0.05286,0.01692,0.01749,0.06288)} {(0.00001,0.00007,0.00001,0.95438),(0.00025,0.00141,0.00025,0.79809),(0.00131,0.00658,0.00131,0.58589),(0.00578,0.02200,0.00578,0.30392)} ] +[2] CLV 6: [ {(0.00650,0.00006,0.00000,0.00008),(0.02836,0.00134,0.00026,0.00160),(0.05628,0.00614,0.00264,0.00696),(0.08549,0.02027,0.01719,0.02127)} {(0.00397,0.00000,0.00606,0.00000),(0.01594,0.00009,0.02582,0.00009),(0.02744,0.00043,0.04811,0.00043),(0.03089,0.00167,0.05920,0.00167)} {(0.00652,0.00488,0.00014,0.00014),(0.02878,0.02159,0.00293,0.00290),(0.05876,0.04438,0.01393,0.01365),(0.09710,0.07621,0.04885,0.04703)} {(0.00002,0.94894,0.00002,0.00014),(0.00047,0.77813,0.00047,0.00296),(0.00236,0.55749,0.00236,0.01419),(0.00997,0.28843,0.00997,0.04670)} {(0.00326,0.00007,0.00007,0.00482),(0.01439,0.00145,0.00146,0.02014),(0.02938,0.00682,0.00696,0.03756),(0.04855,0.02352,0.02442,0.05269)} {(0.00000,0.00007,0.00000,0.01557),(0.00002,0.00132,0.00002,0.05790),(0.00027,0.00557,0.00027,0.08767),(0.00197,0.01505,0.00197,0.07687)} {(0.00001,0.00000,0.92408,0.00000),(0.00016,0.00003,0.68078,0.00003),(0.00062,0.00011,0.39616,0.00011),(0.00146,0.00030,0.11662,0.00030)} {(0.00002,0.94894,0.00002,0.00014),(0.00047,0.77813,0.00047,0.00296),(0.00236,0.55749,0.00236,0.01419),(0.00997,0.28843,0.00997,0.04670)} {(0.00158,0.00002,0.00002,0.00470),(0.00623,0.00040,0.00038,0.01780),(0.01073,0.00176,0.00156,0.02778),(0.01380,0.00535,0.00457,0.02577)} {(0.00397,0.00000,0.00606,0.00000),(0.01594,0.00009,0.02582,0.00009),(0.02744,0.00043,0.04811,0.00043),(0.03089,0.00167,0.05920,0.00167)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00641,0.00242,0.00004,0.00004),(0.02652,0.01030,0.00091,0.00083),(0.04819,0.01996,0.00454,0.00382),(0.06126,0.03069,0.01662,0.01301)} {(0.00001,0.00003,0.00001,0.92152),(0.00011,0.00064,0.00011,0.67361),(0.00046,0.00263,0.00046,0.39162),(0.00151,0.00696,0.00151,0.12454)} {(0.00001,0.00003,0.00001,0.92152),(0.00011,0.00064,0.00011,0.67361),(0.00046,0.00263,0.00046,0.39162),(0.00151,0.00696,0.00151,0.12454)} {(0.00000,0.00160,0.00004,0.00000),(0.00003,0.00670,0.00084,0.00007),(0.00034,0.01252,0.00358,0.00074),(0.00248,0.01777,0.00981,0.00465)} {(0.00001,0.00003,0.00001,0.92152),(0.00011,0.00064,0.00011,0.67361),(0.00046,0.00263,0.00046,0.39162),(0.00151,0.00696,0.00151,0.12454)} {(0.00642,0.00002,0.00000,0.00000),(0.02688,0.00051,0.00017,0.00007),(0.04996,0.00241,0.00172,0.00074),(0.06750,0.00869,0.01124,0.00536)} {(0.00002,0.00007,0.00000,0.00008),(0.00045,0.00135,0.00005,0.00151),(0.00213,0.00578,0.00050,0.00609),(0.00738,0.01645,0.00371,0.01563)} {(0.00001,0.00003,0.00001,0.92152),(0.00011,0.00064,0.00011,0.67361),(0.00046,0.00263,0.00046,0.39162),(0.00151,0.00696,0.00151,0.12454)} ] +[2] CLV 7: [ {(0.00004,0.97051,0.00004,0.00027),(0.00099,0.86665,0.00099,0.00565),(0.00524,0.71660,0.00524,0.02630),(0.02313,0.48944,0.02313,0.08799)} {(0.00002,0.00000,0.95589,0.00000),(0.00036,0.00006,0.80283,0.00006),(0.00170,0.00033,0.58950,0.00033),(0.00588,0.00145,0.29358,0.00145)} {(0.00327,0.00004,0.00004,0.00486),(0.01470,0.00089,0.00089,0.02109),(0.03077,0.00440,0.00447,0.04156),(0.05286,0.01692,0.01749,0.06288)} {(0.00004,0.97051,0.00004,0.00027),(0.00099,0.86665,0.00099,0.00565),(0.00524,0.71660,0.00524,0.02630),(0.02313,0.48944,0.02313,0.08799)} {(0.00001,0.00007,0.00001,0.95438),(0.00025,0.00141,0.00025,0.79809),(0.00131,0.00658,0.00131,0.58589),(0.00578,0.02200,0.00578,0.30392)} {(0.00001,0.00007,0.00001,0.95438),(0.00025,0.00141,0.00025,0.79809),(0.00131,0.00658,0.00131,0.58589),(0.00578,0.02200,0.00578,0.30392)} {(0.00002,0.00000,0.95589,0.00000),(0.00036,0.00006,0.80283,0.00006),(0.00170,0.00033,0.58950,0.00033),(0.00588,0.00145,0.29358,0.00145)} {(0.00004,0.97051,0.00004,0.00027),(0.00099,0.86665,0.00099,0.00565),(0.00524,0.71660,0.00524,0.02630),(0.02313,0.48944,0.02313,0.08799)} {(0.00654,0.00490,0.00008,0.00008),(0.02940,0.02198,0.00179,0.00177),(0.06154,0.04596,0.00895,0.00880),(0.10573,0.07980,0.03499,0.03383)} {(0.97205,0.00002,0.00015,0.00002),(0.87209,0.00056,0.00322,0.00056),(0.72286,0.00295,0.01528,0.00295),(0.48330,0.01301,0.05292,0.01301)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.97205,0.00002,0.00015,0.00002),(0.87209,0.00056,0.00322,0.00056),(0.72286,0.00295,0.01528,0.00295),(0.48330,0.01301,0.05292,0.01301)} {(0.00001,0.00007,0.00001,0.95438),(0.00025,0.00141,0.00025,0.79809),(0.00131,0.00658,0.00131,0.58589),(0.00578,0.02200,0.00578,0.30392)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00002,0.00810,0.00002,0.01606),(0.00050,0.03498,0.00050,0.06714),(0.00262,0.06864,0.00262,0.12414),(0.01156,0.10376,0.01156,0.16353)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.97205,0.00002,0.00015,0.00002),(0.87209,0.00056,0.00322,0.00056),(0.72286,0.00295,0.01528,0.00295),(0.48330,0.01301,0.05292,0.01301)} {(0.97205,0.00002,0.00015,0.00002),(0.87209,0.00056,0.00322,0.00056),(0.72286,0.00295,0.01528,0.00295),(0.48330,0.01301,0.05292,0.01301)} {(0.00002,0.00000,0.95589,0.00000),(0.00036,0.00006,0.80283,0.00006),(0.00170,0.00033,0.58950,0.00033),(0.00588,0.00145,0.29358,0.00145)} ] + + + TEST alpha(ncats) = 0.75( 4), mode = MEDIAN 0.084885 0.386197 0.942076 2.586843 [2] P-matrix for branch length 0.100000 @@ -1116,7 +2232,103 @@ [2] CLV 7: [ {(0.00004,0.97094,0.00004,0.00026),(0.00084,0.87697,0.00084,0.00480),(0.00447,0.73540,0.00447,0.02285),(0.02495,0.47572,0.02495,0.09282)} {(0.00002,0.00000,0.95654,0.00000),(0.00030,0.00005,0.81787,0.00005),(0.00147,0.00028,0.61563,0.00028),(0.00622,0.00156,0.27723,0.00156)} {(0.00322,0.00004,0.00004,0.00479),(0.01357,0.00075,0.00076,0.01955),(0.02880,0.00379,0.00385,0.03922),(0.05404,0.01805,0.01868,0.06366)} {(0.00004,0.97094,0.00004,0.00026),(0.00084,0.87697,0.00084,0.00480),(0.00447,0.73540,0.00447,0.02285),(0.02495,0.47572,0.02495,0.09282)} {(0.00001,0.00007,0.00001,0.95505),(0.00021,0.00120,0.00021,0.81331),(0.00112,0.00571,0.00112,0.61150),(0.00624,0.02321,0.00624,0.28879)} {(0.00001,0.00007,0.00001,0.95505),(0.00021,0.00120,0.00021,0.81331),(0.00112,0.00571,0.00112,0.61150),(0.00624,0.02321,0.00624,0.28879)} {(0.00002,0.00000,0.95654,0.00000),(0.00030,0.00005,0.81787,0.00005),(0.00147,0.00028,0.61563,0.00028),(0.00622,0.00156,0.27723,0.00156)} {(0.00004,0.97094,0.00004,0.00026),(0.00084,0.87697,0.00084,0.00480),(0.00447,0.73540,0.00447,0.02285),(0.02495,0.47572,0.02495,0.09282)} {(0.00645,0.00483,0.00008,0.00008),(0.02714,0.02030,0.00151,0.00150),(0.05760,0.04301,0.00770,0.00758),(0.10807,0.08170,0.03736,0.03609)} {(0.97247,0.00002,0.00015,0.00002),(0.88214,0.00047,0.00273,0.00047),(0.74190,0.00252,0.01324,0.00252),(0.46817,0.01403,0.05596,0.01403)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.97247,0.00002,0.00015,0.00002),(0.88214,0.00047,0.00273,0.00047),(0.74190,0.00252,0.01324,0.00252),(0.46817,0.01403,0.05596,0.01403)} {(0.00001,0.00007,0.00001,0.95505),(0.00021,0.00120,0.00021,0.81331),(0.00112,0.00571,0.00112,0.61150),(0.00624,0.02321,0.00624,0.28879)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00002,0.00798,0.00002,0.01583),(0.00042,0.03243,0.00042,0.06247),(0.00224,0.06481,0.00224,0.11820),(0.01247,0.10507,0.01247,0.16372)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.97247,0.00002,0.00015,0.00002),(0.88214,0.00047,0.00273,0.00047),(0.74190,0.00252,0.01324,0.00252),(0.46817,0.01403,0.05596,0.01403)} {(0.97247,0.00002,0.00015,0.00002),(0.88214,0.00047,0.00273,0.00047),(0.74190,0.00252,0.01324,0.00252),(0.46817,0.01403,0.05596,0.01403)} {(0.00002,0.00000,0.95654,0.00000),(0.00030,0.00005,0.81787,0.00005),(0.00147,0.00028,0.61563,0.00028),(0.00622,0.00156,0.27723,0.00156)} ] - TEST alpha(ncats) = 1.00( 4) + TEST alpha(ncats) = 1.00( 4), mode = MEAN + +0.145784 0.513132 1.070831 2.270253 +[3] P-matrix for branch length 0.100000 ++0.9881 +0.0056 +0.0035 +0.0028 ++0.0042 +0.9874 +0.0014 +0.0070 ++0.0105 +0.0056 +0.9811 +0.0028 ++0.0042 +0.0139 +0.0014 +0.9804 + ++0.9590 +0.0194 +0.0119 +0.0097 ++0.0146 +0.9569 +0.0049 +0.0236 ++0.0356 +0.0194 +0.9352 +0.0097 ++0.0146 +0.0472 +0.0049 +0.9333 + ++0.9173 +0.0395 +0.0235 +0.0197 ++0.0296 +0.9139 +0.0099 +0.0466 ++0.0705 +0.0395 +0.8703 +0.0197 ++0.0296 +0.0932 +0.0099 +0.8673 + ++0.8367 +0.0791 +0.0446 +0.0396 ++0.0593 +0.8332 +0.0198 +0.0877 ++0.1339 +0.0791 +0.7474 +0.0396 ++0.0593 +0.1754 +0.0198 +0.7455 + + +[3] P-matrix for branch length 0.200000 ++0.9764 +0.0112 +0.0069 +0.0056 ++0.0084 +0.9751 +0.0028 +0.0137 ++0.0207 +0.0112 +0.9626 +0.0056 ++0.0084 +0.0275 +0.0028 +0.9614 + ++0.9205 +0.0379 +0.0226 +0.0190 ++0.0285 +0.9172 +0.0095 +0.0448 ++0.0678 +0.0379 +0.8753 +0.0190 ++0.0285 +0.0897 +0.0095 +0.8724 + ++0.8448 +0.0751 +0.0426 +0.0375 ++0.0563 +0.8411 +0.0188 +0.0838 ++0.1278 +0.0751 +0.7596 +0.0375 ++0.0563 +0.1675 +0.0188 +0.7574 + ++0.7131 +0.1426 +0.0730 +0.0713 ++0.1069 +0.7159 +0.0356 +0.1415 ++0.2191 +0.1426 +0.5670 +0.0713 ++0.1069 +0.2831 +0.0356 +0.5743 + + +[3] P-matrix for branch length 1.000000 ++0.8899 +0.0528 +0.0309 +0.0264 ++0.0396 +0.8862 +0.0132 +0.0610 ++0.0926 +0.0528 +0.8282 +0.0264 ++0.0396 +0.1220 +0.0132 +0.8252 + ++0.6861 +0.1569 +0.0785 +0.0785 ++0.1177 +0.6914 +0.0392 +0.1517 ++0.2355 +0.1569 +0.5291 +0.0785 ++0.1177 +0.3033 +0.0392 +0.5397 + ++0.5065 +0.2586 +0.1057 +0.1293 ++0.1939 +0.5405 +0.0646 +0.2009 ++0.3170 +0.2586 +0.2952 +0.1293 ++0.1939 +0.4018 +0.0646 +0.3396 + ++0.3570 +0.3559 +0.1092 +0.1779 ++0.2669 +0.4345 +0.0890 +0.2097 ++0.3276 +0.3559 +0.1386 +0.1779 ++0.2669 +0.4193 +0.0890 +0.2248 + + +[3] P-matrix for branch length 1.000000 ++0.8899 +0.0528 +0.0309 +0.0264 ++0.0396 +0.8862 +0.0132 +0.0610 ++0.0926 +0.0528 +0.8282 +0.0264 ++0.0396 +0.1220 +0.0132 +0.8252 + ++0.6861 +0.1569 +0.0785 +0.0785 ++0.1177 +0.6914 +0.0392 +0.1517 ++0.2355 +0.1569 +0.5291 +0.0785 ++0.1177 +0.3033 +0.0392 +0.5397 + ++0.5065 +0.2586 +0.1057 +0.1293 ++0.1939 +0.5405 +0.0646 +0.2009 ++0.3170 +0.2586 +0.2952 +0.1293 ++0.1939 +0.4018 +0.0646 +0.3396 + ++0.3570 +0.3559 +0.1092 +0.1779 ++0.2669 +0.4345 +0.0890 +0.2097 ++0.3276 +0.3559 +0.1386 +0.1779 ++0.2669 +0.4193 +0.0890 +0.2248 + + +[3] CLV 5: [ {(0.01096,0.02156,0.00029,0.02664),(0.03564,0.06723,0.00329,0.08080),(0.06626,0.11783,0.01241,0.13631),(0.11185,0.17789,0.04141,0.19286)} {(0.95330,0.00007,0.00043,0.00007),(0.84729,0.00081,0.00460,0.00081),(0.71363,0.00317,0.01633,0.00317),(0.50846,0.01144,0.04801,0.01144)} {(0.01090,0.00816,0.00023,0.00023),(0.03492,0.02610,0.00257,0.00255),(0.06344,0.04737,0.00959,0.00943),(0.10168,0.07656,0.03125,0.03028)} {(0.00012,0.95083,0.00012,0.00075),(0.00144,0.84129,0.00144,0.00804),(0.00564,0.70753,0.00564,0.02806),(0.02033,0.51245,0.02033,0.08014)} {(0.00545,0.00011,0.00012,0.00805),(0.01746,0.00128,0.00129,0.02482),(0.03172,0.00472,0.00480,0.04266),(0.05084,0.01514,0.01562,0.06142)} {(0.00006,0.01339,0.00006,0.02641),(0.00072,0.04113,0.00072,0.07824),(0.00282,0.07045,0.00282,0.12687),(0.01017,0.10133,0.01017,0.16258)} {(0.00005,0.00001,0.92660,0.00001),(0.00051,0.00009,0.76607,0.00009),(0.00181,0.00035,0.57697,0.00035),(0.00533,0.00127,0.32148,0.00127)} {(0.00012,0.95083,0.00012,0.00075),(0.00144,0.84129,0.00144,0.00804),(0.00564,0.70753,0.00564,0.02806),(0.02033,0.51245,0.02033,0.08014)} {(0.00003,0.00019,0.00003,0.92423),(0.00036,0.00201,0.00036,0.76104),(0.00141,0.00702,0.00141,0.57364),(0.00508,0.02004,0.00508,0.32983)} {(0.95330,0.00007,0.00043,0.00007),(0.84729,0.00081,0.00460,0.00081),(0.71363,0.00317,0.01633,0.00317),(0.50846,0.01144,0.04801,0.01144)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.95330,0.00007,0.00043,0.00007),(0.84729,0.00081,0.00460,0.00081),(0.71363,0.00317,0.01633,0.00317),(0.50846,0.01144,0.04801,0.01144)} {(0.00003,0.00019,0.00003,0.92423),(0.00036,0.00201,0.00036,0.76104),(0.00141,0.00702,0.00141,0.57364),(0.00508,0.02004,0.00508,0.32983)} {(0.00003,0.00019,0.00003,0.92423),(0.00036,0.00201,0.00036,0.76104),(0.00141,0.00702,0.00141,0.57364),(0.00508,0.02004,0.00508,0.32983)} {(0.00008,0.00272,0.01075,0.00008),(0.00086,0.00870,0.03320,0.00085),(0.00320,0.01579,0.05704,0.00314),(0.01042,0.02552,0.08085,0.01009)} {(0.00003,0.00019,0.00003,0.92423),(0.00036,0.00201,0.00036,0.76104),(0.00141,0.00702,0.00141,0.57364),(0.00508,0.02004,0.00508,0.32983)} {(0.01090,0.00816,0.00023,0.00023),(0.03492,0.02610,0.00257,0.00255),(0.06344,0.04737,0.00959,0.00943),(0.10168,0.07656,0.03125,0.03028)} {(0.00545,0.00011,0.00012,0.00805),(0.01746,0.00128,0.00129,0.02482),(0.03172,0.00472,0.00480,0.04266),(0.05084,0.01514,0.01562,0.06142)} {(0.00003,0.00019,0.00003,0.92423),(0.00036,0.00201,0.00036,0.76104),(0.00141,0.00702,0.00141,0.57364),(0.00508,0.02004,0.00508,0.32983)} ] +[3] CLV 6: [ {(0.01077,0.00018,0.00001,0.00022),(0.03342,0.00190,0.00044,0.00225),(0.05779,0.00654,0.00292,0.00739),(0.08353,0.01846,0.01482,0.01951)} {(0.00648,0.00001,0.01001,0.00001),(0.01838,0.00012,0.03018,0.00012),(0.02790,0.00046,0.04915,0.00046),(0.03133,0.00149,0.05971,0.00149)} {(0.01082,0.00811,0.00039,0.00039),(0.03405,0.02555,0.00418,0.00414),(0.06047,0.04571,0.01488,0.01457),(0.09373,0.07310,0.04422,0.04265)} {(0.00006,0.91548,0.00006,0.00038),(0.00068,0.73862,0.00068,0.00424),(0.00254,0.54520,0.00254,0.01516),(0.00879,0.31183,0.00879,0.04281)} {(0.00541,0.00019,0.00019,0.00792),(0.01702,0.00207,0.00209,0.02349),(0.03024,0.00729,0.00744,0.03842),(0.04686,0.02132,0.02211,0.05177)} {(0.00000,0.00018,0.00000,0.02507),(0.00004,0.00185,0.00004,0.06541),(0.00030,0.00590,0.00030,0.08840),(0.00167,0.01408,0.00167,0.08028)} {(0.00002,0.00000,0.87509,0.00000),(0.00022,0.00004,0.62711,0.00004),(0.00065,0.00011,0.38151,0.00011),(0.00138,0.00028,0.13673,0.00028)} {(0.00006,0.91548,0.00006,0.00038),(0.00068,0.73862,0.00068,0.00424),(0.00254,0.54520,0.00254,0.01516),(0.00879,0.31183,0.00879,0.04281)} {(0.00257,0.00006,0.00005,0.00759),(0.00717,0.00057,0.00053,0.02021),(0.01092,0.00187,0.00165,0.02806),(0.01363,0.00492,0.00419,0.02672)} {(0.00648,0.00001,0.01001,0.00001),(0.01838,0.00012,0.03018,0.00012),(0.02790,0.00046,0.04915,0.00046),(0.03133,0.00149,0.05971,0.00149)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.01052,0.00399,0.00012,0.00011),(0.03083,0.01208,0.00131,0.00118),(0.04920,0.02048,0.00486,0.00408),(0.06116,0.02982,0.01502,0.01179)} {(0.00001,0.00009,0.00001,0.87115),(0.00015,0.00089,0.00015,0.61972),(0.00049,0.00278,0.00049,0.37737),(0.00136,0.00651,0.00136,0.14347)} {(0.00001,0.00009,0.00001,0.87115),(0.00015,0.00089,0.00015,0.61972),(0.00049,0.00278,0.00049,0.37737),(0.00136,0.00651,0.00136,0.14347)} {(0.00000,0.00264,0.00012,0.00000),(0.00005,0.00781,0.00119,0.00012),(0.00037,0.01282,0.00380,0.00081),(0.00210,0.01744,0.00916,0.00402)} {(0.00001,0.00009,0.00001,0.87115),(0.00015,0.00089,0.00015,0.61972),(0.00049,0.00278,0.00049,0.37737),(0.00136,0.00651,0.00136,0.14347)} {(0.01056,0.00007,0.00001,0.00000),(0.03134,0.00073,0.00028,0.00012),(0.05108,0.00257,0.00190,0.00082),(0.06683,0.00782,0.00969,0.00456)} {(0.00006,0.00019,0.00000,0.00022),(0.00065,0.00190,0.00008,0.00211),(0.00227,0.00613,0.00056,0.00644),(0.00668,0.01527,0.00315,0.01466)} {(0.00001,0.00009,0.00001,0.87115),(0.00015,0.00089,0.00015,0.61972),(0.00049,0.00278,0.00049,0.37737),(0.00136,0.00651,0.00136,0.14347)} ] +[3] CLV 7: [ {(0.00012,0.95083,0.00012,0.00075),(0.00144,0.84129,0.00144,0.00804),(0.00564,0.70753,0.00564,0.02806),(0.02033,0.51245,0.02033,0.08014)} {(0.00005,0.00001,0.92660,0.00001),(0.00051,0.00009,0.76607,0.00009),(0.00181,0.00035,0.57697,0.00035),(0.00533,0.00127,0.32148,0.00127)} {(0.00545,0.00011,0.00012,0.00805),(0.01746,0.00128,0.00129,0.02482),(0.03172,0.00472,0.00480,0.04266),(0.05084,0.01514,0.01562,0.06142)} {(0.00012,0.95083,0.00012,0.00075),(0.00144,0.84129,0.00144,0.00804),(0.00564,0.70753,0.00564,0.02806),(0.02033,0.51245,0.02033,0.08014)} {(0.00003,0.00019,0.00003,0.92423),(0.00036,0.00201,0.00036,0.76104),(0.00141,0.00702,0.00141,0.57364),(0.00508,0.02004,0.00508,0.32983)} {(0.00003,0.00019,0.00003,0.92423),(0.00036,0.00201,0.00036,0.76104),(0.00141,0.00702,0.00141,0.57364),(0.00508,0.02004,0.00508,0.32983)} {(0.00005,0.00001,0.92660,0.00001),(0.00051,0.00009,0.76607,0.00009),(0.00181,0.00035,0.57697,0.00035),(0.00533,0.00127,0.32148,0.00127)} {(0.00012,0.95083,0.00012,0.00075),(0.00144,0.84129,0.00144,0.00804),(0.00564,0.70753,0.00564,0.02806),(0.02033,0.51245,0.02033,0.08014)} {(0.01090,0.00816,0.00023,0.00023),(0.03492,0.02610,0.00257,0.00255),(0.06344,0.04737,0.00959,0.00943),(0.10168,0.07656,0.03125,0.03028)} {(0.95330,0.00007,0.00043,0.00007),(0.84729,0.00081,0.00460,0.00081),(0.71363,0.00317,0.01633,0.00317),(0.50846,0.01144,0.04801,0.01144)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.95330,0.00007,0.00043,0.00007),(0.84729,0.00081,0.00460,0.00081),(0.71363,0.00317,0.01633,0.00317),(0.50846,0.01144,0.04801,0.01144)} {(0.00003,0.00019,0.00003,0.92423),(0.00036,0.00201,0.00036,0.76104),(0.00141,0.00702,0.00141,0.57364),(0.00508,0.02004,0.00508,0.32983)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00006,0.01339,0.00006,0.02641),(0.00072,0.04113,0.00072,0.07824),(0.00282,0.07045,0.00282,0.12687),(0.01017,0.10133,0.01017,0.16258)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.95330,0.00007,0.00043,0.00007),(0.84729,0.00081,0.00460,0.00081),(0.71363,0.00317,0.01633,0.00317),(0.50846,0.01144,0.04801,0.01144)} {(0.95330,0.00007,0.00043,0.00007),(0.84729,0.00081,0.00460,0.00081),(0.71363,0.00317,0.01633,0.00317),(0.50846,0.01144,0.04801,0.01144)} {(0.00005,0.00001,0.92660,0.00001),(0.00051,0.00009,0.76607,0.00009),(0.00181,0.00035,0.57697,0.00035),(0.00533,0.00127,0.32148,0.00127)} ] + + + TEST alpha(ncats) = 1.00( 4), mode = MEDIAN 0.136954 0.476752 1.000000 2.386294 [3] P-matrix for branch length 0.100000 @@ -1212,36 +2424,132 @@ [3] CLV 7: [ {(0.00011,0.95370,0.00011,0.00067),(0.00125,0.85130,0.00125,0.00705),(0.00498,0.72266,0.00498,0.02516),(0.02200,0.49842,0.02200,0.08489)} {(0.00004,0.00001,0.93088,0.00001),(0.00045,0.00008,0.78055,0.00008),(0.00162,0.00031,0.59790,0.00031),(0.00566,0.00138,0.30439,0.00138)} {(0.00513,0.00010,0.00010,0.00759),(0.01637,0.00111,0.00112,0.02336),(0.03014,0.00420,0.00427,0.04081),(0.05208,0.01621,0.01675,0.06233)} {(0.00011,0.95370,0.00011,0.00067),(0.00125,0.85130,0.00125,0.00705),(0.00498,0.72266,0.00498,0.02516),(0.02200,0.49842,0.02200,0.08489)} {(0.00003,0.00017,0.00003,0.92863),(0.00031,0.00176,0.00031,0.77561),(0.00125,0.00629,0.00125,0.59411),(0.00550,0.02122,0.00550,0.31394)} {(0.00003,0.00017,0.00003,0.92863),(0.00031,0.00176,0.00031,0.77561),(0.00125,0.00629,0.00125,0.59411),(0.00550,0.02122,0.00550,0.31394)} {(0.00004,0.00001,0.93088,0.00001),(0.00045,0.00008,0.78055,0.00008),(0.00162,0.00031,0.59790,0.00031),(0.00566,0.00138,0.30439,0.00138)} {(0.00011,0.95370,0.00011,0.00067),(0.00125,0.85130,0.00125,0.00705),(0.00498,0.72266,0.00498,0.02516),(0.02200,0.49842,0.02200,0.08489)} {(0.01026,0.00769,0.00020,0.00020),(0.03274,0.02447,0.00224,0.00223),(0.06027,0.04501,0.00853,0.00840),(0.10417,0.07854,0.03349,0.03241)} {(0.95605,0.00006,0.00038,0.00006),(0.85710,0.00070,0.00403,0.00070),(0.72901,0.00280,0.01461,0.00280),(0.49314,0.01238,0.05098,0.01238)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.95605,0.00006,0.00038,0.00006),(0.85710,0.00070,0.00403,0.00070),(0.72901,0.00280,0.01461,0.00280),(0.49314,0.01238,0.05098,0.01238)} {(0.00003,0.00017,0.00003,0.92863),(0.00031,0.00176,0.00031,0.77561),(0.00125,0.00629,0.00125,0.59411),(0.00550,0.02122,0.00550,0.31394)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00006,0.01262,0.00006,0.02491),(0.00063,0.03873,0.00063,0.07393),(0.00249,0.06742,0.00249,0.12226),(0.01100,0.10285,0.01100,0.16325)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.95605,0.00006,0.00038,0.00006),(0.85710,0.00070,0.00403,0.00070),(0.72901,0.00280,0.01461,0.00280),(0.49314,0.01238,0.05098,0.01238)} {(0.95605,0.00006,0.00038,0.00006),(0.85710,0.00070,0.00403,0.00070),(0.72901,0.00280,0.01461,0.00280),(0.49314,0.01238,0.05098,0.01238)} {(0.00004,0.00001,0.93088,0.00001),(0.00045,0.00008,0.78055,0.00008),(0.00162,0.00031,0.59790,0.00031),(0.00566,0.00138,0.30439,0.00138)} ] - TEST alpha(ncats) = 1.50( 4) + TEST alpha(ncats) = 1.50( 4), mode = MEAN -0.225323 0.588556 1.050422 2.135699 +0.245178 0.621121 1.101255 2.032446 [4] P-matrix for branch length 0.100000 -+0.9817 +0.0087 +0.0054 +0.0043 -+0.0065 +0.9807 +0.0022 +0.0107 -+0.0161 +0.0087 +0.9710 +0.0043 -+0.0065 +0.0214 +0.0022 +0.9700 ++0.9801 +0.0094 +0.0058 +0.0047 ++0.0071 +0.9790 +0.0024 +0.0116 ++0.0174 +0.0094 +0.9684 +0.0047 ++0.0071 +0.0232 +0.0024 +0.9674 -+0.9532 +0.0222 +0.0135 +0.0111 -+0.0167 +0.9509 +0.0056 +0.0269 -+0.0405 +0.0222 +0.9261 +0.0111 -+0.0167 +0.0538 +0.0056 +0.9240 ++0.9507 +0.0234 +0.0142 +0.0117 ++0.0176 +0.9483 +0.0059 +0.0283 ++0.0426 +0.0234 +0.9222 +0.0117 ++0.0176 +0.0566 +0.0059 +0.9200 -+0.9187 +0.0388 +0.0231 +0.0194 -+0.0291 +0.9154 +0.0097 +0.0458 -+0.0693 +0.0388 +0.8725 +0.0194 -+0.0291 +0.0916 +0.0097 +0.8696 ++0.9151 +0.0406 +0.0241 +0.0203 ++0.0304 +0.9117 +0.0101 +0.0478 ++0.0723 +0.0406 +0.8669 +0.0203 ++0.0304 +0.0955 +0.0101 +0.8639 -+0.8451 +0.0749 +0.0425 +0.0375 -+0.0562 +0.8415 +0.0187 +0.0836 -+0.1275 +0.0749 +0.7602 +0.0375 -+0.0562 +0.1671 +0.0187 +0.7580 ++0.8517 +0.0716 +0.0408 +0.0358 ++0.0537 +0.8480 +0.0179 +0.0803 ++0.1225 +0.0716 +0.7701 +0.0358 ++0.0537 +0.1607 +0.0179 +0.7677 [4] P-matrix for branch length 0.200000 -+0.9638 +0.0171 +0.0105 +0.0086 -+0.0128 +0.9620 +0.0043 +0.0209 -+0.0314 +0.0171 +0.9429 +0.0086 -+0.0128 +0.0418 +0.0043 +0.9411 ++0.9607 +0.0186 +0.0114 +0.0093 ++0.0139 +0.9588 +0.0046 +0.0226 ++0.0341 +0.0186 +0.9380 +0.0093 ++0.0139 +0.0453 +0.0046 +0.9361 + ++0.9050 +0.0454 +0.0268 +0.0227 ++0.0341 +0.9014 +0.0114 +0.0531 ++0.0805 +0.0454 +0.8513 +0.0227 ++0.0341 +0.1062 +0.0114 +0.8483 + ++0.8409 +0.0770 +0.0436 +0.0385 ++0.0578 +0.8374 +0.0193 +0.0856 ++0.1307 +0.0770 +0.7538 +0.0385 ++0.0578 +0.1712 +0.0193 +0.7517 + ++0.7362 +0.1304 +0.0681 +0.0652 ++0.0978 +0.7372 +0.0326 +0.1324 ++0.2044 +0.1304 +0.6000 +0.0652 ++0.0978 +0.2647 +0.0326 +0.6048 + + +[4] P-matrix for branch length 1.000000 ++0.8255 +0.0847 +0.0474 +0.0424 ++0.0635 +0.8222 +0.0212 +0.0930 ++0.1422 +0.0847 +0.7307 +0.0424 ++0.0635 +0.1861 +0.0212 +0.7292 + ++0.6415 +0.1811 +0.0868 +0.0906 ++0.1359 +0.6519 +0.0453 +0.1670 ++0.2604 +0.1811 +0.4679 +0.0906 ++0.1359 +0.3339 +0.0453 +0.4849 + ++0.4997 +0.2627 +0.1063 +0.1313 ++0.1970 +0.5353 +0.0657 +0.2021 ++0.3189 +0.2627 +0.2870 +0.1313 ++0.1970 +0.4041 +0.0657 +0.3332 + ++0.3732 +0.3444 +0.1102 +0.1722 ++0.2583 +0.4449 +0.0861 +0.2107 ++0.3306 +0.3444 +0.1528 +0.1722 ++0.2583 +0.4214 +0.0861 +0.2342 + + +[4] P-matrix for branch length 1.000000 ++0.8255 +0.0847 +0.0474 +0.0424 ++0.0635 +0.8222 +0.0212 +0.0930 ++0.1422 +0.0847 +0.7307 +0.0424 ++0.0635 +0.1861 +0.0212 +0.7292 + ++0.6415 +0.1811 +0.0868 +0.0906 ++0.1359 +0.6519 +0.0453 +0.1670 ++0.2604 +0.1811 +0.4679 +0.0906 ++0.1359 +0.3339 +0.0453 +0.4849 + ++0.4997 +0.2627 +0.1063 +0.1313 ++0.1970 +0.5353 +0.0657 +0.2021 ++0.3189 +0.2627 +0.2870 +0.1313 ++0.1970 +0.4041 +0.0657 +0.3332 + ++0.3732 +0.3444 +0.1102 +0.1722 ++0.2583 +0.4449 +0.0861 +0.2107 ++0.3306 +0.3444 +0.1528 +0.1722 ++0.2583 +0.4214 +0.0861 +0.2342 + + +[4] CLV 5: [ {(0.01804,0.03507,0.00081,0.04300),(0.04216,0.07861,0.00469,0.09374),(0.06772,0.12006,0.01303,0.13863),(0.10453,0.16970,0.03517,0.18602)} {(0.92303,0.00019,0.00116,0.00019),(0.81902,0.00116,0.00648,0.00116),(0.70716,0.00334,0.01708,0.00334),(0.54202,0.00957,0.04178,0.00957)} {(0.01787,0.01337,0.00063,0.00063),(0.04113,0.03073,0.00366,0.00362),(0.06476,0.04836,0.01006,0.00989),(0.09603,0.07212,0.02666,0.02590)} {(0.00035,0.91925,0.00035,0.00205),(0.00207,0.81259,0.00207,0.01128),(0.00593,0.70118,0.00593,0.02933),(0.01701,0.54345,0.01701,0.07009)} {(0.00893,0.00032,0.00032,0.01306),(0.02056,0.00181,0.00183,0.02892),(0.03238,0.00495,0.00503,0.04342),(0.04801,0.01295,0.01333,0.05917)} {(0.00017,0.02170,0.00017,0.04237),(0.00103,0.04788,0.00103,0.09012),(0.00297,0.07170,0.00297,0.12874),(0.00851,0.09759,0.00851,0.16012)} {(0.00013,0.00002,0.87988,0.00002),(0.00072,0.00013,0.72478,0.00013),(0.00190,0.00037,0.56823,0.00037),(0.00464,0.00106,0.35995,0.00106)} {(0.00035,0.91925,0.00035,0.00205),(0.00207,0.81259,0.00207,0.01128),(0.00593,0.70118,0.00593,0.02933),(0.01701,0.54345,0.01701,0.07009)} {(0.00009,0.00051,0.00009,0.87637),(0.00052,0.00282,0.00052,0.71965),(0.00148,0.00733,0.00148,0.56512),(0.00425,0.01752,0.00425,0.36581)} {(0.92303,0.00019,0.00116,0.00019),(0.81902,0.00116,0.00648,0.00116),(0.70716,0.00334,0.01708,0.00334),(0.54202,0.00957,0.04178,0.00957)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.92303,0.00019,0.00116,0.00019),(0.81902,0.00116,0.00648,0.00116),(0.70716,0.00334,0.01708,0.00334),(0.54202,0.00957,0.04178,0.00957)} {(0.00009,0.00051,0.00009,0.87637),(0.00052,0.00282,0.00052,0.71965),(0.00148,0.00733,0.00148,0.56512),(0.00425,0.01752,0.00425,0.36581)} {(0.00009,0.00051,0.00009,0.87637),(0.00052,0.00282,0.00052,0.71965),(0.00148,0.00733,0.00148,0.56512),(0.00425,0.01752,0.00425,0.36581)} {(0.00021,0.00446,0.01744,0.00021),(0.00122,0.01024,0.03869,0.00121),(0.00335,0.01612,0.05805,0.00330),(0.00889,0.02404,0.07825,0.00863)} {(0.00009,0.00051,0.00009,0.87637),(0.00052,0.00282,0.00052,0.71965),(0.00148,0.00733,0.00148,0.56512),(0.00425,0.01752,0.00425,0.36581)} {(0.01787,0.01337,0.00063,0.00063),(0.04113,0.03073,0.00366,0.00362),(0.06476,0.04836,0.01006,0.00989),(0.09603,0.07212,0.02666,0.02590)} {(0.00893,0.00032,0.00032,0.01306),(0.02056,0.00181,0.00183,0.02892),(0.03238,0.00495,0.00503,0.04342),(0.04801,0.01295,0.01333,0.05917)} {(0.00009,0.00051,0.00009,0.87637),(0.00052,0.00282,0.00052,0.71965),(0.00148,0.00733,0.00148,0.56512),(0.00425,0.01752,0.00425,0.36581)} ] +[4] CLV 6: [ {(0.01750,0.00049,0.00006,0.00059),(0.03899,0.00266,0.00073,0.00312),(0.05884,0.00683,0.00312,0.00771),(0.08046,0.01615,0.01200,0.01725)} {(0.01028,0.00003,0.01616,0.00003),(0.02089,0.00018,0.03486,0.00018),(0.02821,0.00048,0.04985,0.00048),(0.03164,0.00126,0.05974,0.00126)} {(0.01764,0.01323,0.00105,0.00105),(0.03991,0.02998,0.00589,0.00581),(0.06166,0.04664,0.01557,0.01524),(0.08897,0.06887,0.03838,0.03711)} {(0.00017,0.86286,0.00017,0.00106),(0.00096,0.69497,0.00096,0.00599),(0.00266,0.53667,0.00266,0.01585),(0.00739,0.34479,0.00739,0.03769)} {(0.00882,0.00052,0.00053,0.01270),(0.01996,0.00291,0.00294,0.02708),(0.03083,0.00762,0.00778,0.03902),(0.04449,0.01855,0.01919,0.05032)} {(0.00001,0.00049,0.00001,0.03884),(0.00007,0.00255,0.00007,0.07265),(0.00032,0.00613,0.00032,0.08885),(0.00133,0.01274,0.00133,0.08420)} {(0.00006,0.00001,0.79930,0.00001),(0.00029,0.00005,0.56908,0.00005),(0.00067,0.00012,0.37143,0.00012),(0.00128,0.00025,0.16671,0.00025)} {(0.00017,0.86286,0.00017,0.00106),(0.00096,0.69497,0.00096,0.00599),(0.00266,0.53667,0.00266,0.01585),(0.00739,0.34479,0.00739,0.03769)} {(0.00405,0.00015,0.00014,0.01182),(0.00813,0.00079,0.00072,0.02257),(0.01106,0.00195,0.00172,0.02824),(0.01336,0.00436,0.00371,0.02778)} {(0.01028,0.00003,0.01616,0.00003),(0.02089,0.00018,0.03486,0.00018),(0.02821,0.00048,0.04985,0.00048),(0.03164,0.00126,0.05974,0.00126)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.01682,0.00643,0.00032,0.00030),(0.03539,0.01402,0.00186,0.00165),(0.04988,0.02084,0.00509,0.00426),(0.06057,0.02857,0.01299,0.01026)} {(0.00004,0.00024,0.00004,0.79366),(0.00020,0.00122,0.00020,0.56182),(0.00051,0.00289,0.00051,0.36758),(0.00118,0.00590,0.00118,0.17173)} {(0.00004,0.00024,0.00004,0.79366),(0.00020,0.00122,0.00020,0.56182),(0.00051,0.00289,0.00051,0.36758),(0.00118,0.00590,0.00118,0.17173)} {(0.00001,0.00423,0.00032,0.00002),(0.00009,0.00901,0.00164,0.00021),(0.00040,0.01302,0.00395,0.00087),(0.00167,0.01692,0.00827,0.00327)} {(0.00004,0.00024,0.00004,0.79366),(0.00020,0.00122,0.00020,0.56182),(0.00051,0.00289,0.00051,0.36758),(0.00118,0.00590,0.00118,0.17173)} {(0.01695,0.00018,0.00004,0.00001),(0.03612,0.00102,0.00047,0.00020),(0.05185,0.00269,0.00203,0.00088),(0.06550,0.00674,0.00785,0.00363)} {(0.00016,0.00050,0.00001,0.00057),(0.00091,0.00262,0.00013,0.00288),(0.00237,0.00638,0.00060,0.00668),(0.00580,0.01368,0.00250,0.01332)} {(0.00004,0.00024,0.00004,0.79366),(0.00020,0.00122,0.00020,0.56182),(0.00051,0.00289,0.00051,0.36758),(0.00118,0.00590,0.00118,0.17173)} ] +[4] CLV 7: [ {(0.00035,0.91925,0.00035,0.00205),(0.00207,0.81259,0.00207,0.01128),(0.00593,0.70118,0.00593,0.02933),(0.01701,0.54345,0.01701,0.07009)} {(0.00013,0.00002,0.87988,0.00002),(0.00072,0.00013,0.72478,0.00013),(0.00190,0.00037,0.56823,0.00037),(0.00464,0.00106,0.35995,0.00106)} {(0.00893,0.00032,0.00032,0.01306),(0.02056,0.00181,0.00183,0.02892),(0.03238,0.00495,0.00503,0.04342),(0.04801,0.01295,0.01333,0.05917)} {(0.00035,0.91925,0.00035,0.00205),(0.00207,0.81259,0.00207,0.01128),(0.00593,0.70118,0.00593,0.02933),(0.01701,0.54345,0.01701,0.07009)} {(0.00009,0.00051,0.00009,0.87637),(0.00052,0.00282,0.00052,0.71965),(0.00148,0.00733,0.00148,0.56512),(0.00425,0.01752,0.00425,0.36581)} {(0.00009,0.00051,0.00009,0.87637),(0.00052,0.00282,0.00052,0.71965),(0.00148,0.00733,0.00148,0.56512),(0.00425,0.01752,0.00425,0.36581)} {(0.00013,0.00002,0.87988,0.00002),(0.00072,0.00013,0.72478,0.00013),(0.00190,0.00037,0.56823,0.00037),(0.00464,0.00106,0.35995,0.00106)} {(0.00035,0.91925,0.00035,0.00205),(0.00207,0.81259,0.00207,0.01128),(0.00593,0.70118,0.00593,0.02933),(0.01701,0.54345,0.01701,0.07009)} {(0.01787,0.01337,0.00063,0.00063),(0.04113,0.03073,0.00366,0.00362),(0.06476,0.04836,0.01006,0.00989),(0.09603,0.07212,0.02666,0.02590)} {(0.92303,0.00019,0.00116,0.00019),(0.81902,0.00116,0.00648,0.00116),(0.70716,0.00334,0.01708,0.00334),(0.54202,0.00957,0.04178,0.00957)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.92303,0.00019,0.00116,0.00019),(0.81902,0.00116,0.00648,0.00116),(0.70716,0.00334,0.01708,0.00334),(0.54202,0.00957,0.04178,0.00957)} {(0.00009,0.00051,0.00009,0.87637),(0.00052,0.00282,0.00052,0.71965),(0.00148,0.00733,0.00148,0.56512),(0.00425,0.01752,0.00425,0.36581)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00017,0.02170,0.00017,0.04237),(0.00103,0.04788,0.00103,0.09012),(0.00297,0.07170,0.00297,0.12874),(0.00851,0.09759,0.00851,0.16012)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.92303,0.00019,0.00116,0.00019),(0.81902,0.00116,0.00648,0.00116),(0.70716,0.00334,0.01708,0.00334),(0.54202,0.00957,0.04178,0.00957)} {(0.92303,0.00019,0.00116,0.00019),(0.81902,0.00116,0.00648,0.00116),(0.70716,0.00334,0.01708,0.00334),(0.54202,0.00957,0.04178,0.00957)} {(0.00013,0.00002,0.87988,0.00002),(0.00072,0.00013,0.72478,0.00013),(0.00190,0.00037,0.56823,0.00037),(0.00464,0.00106,0.35995,0.00106)} ] + + + TEST alpha(ncats) = 1.50( 4), mode = MEDIAN + +0.225323 0.588556 1.050422 2.135699 +[4] P-matrix for branch length 0.100000 ++0.9817 +0.0087 +0.0054 +0.0043 ++0.0065 +0.9807 +0.0022 +0.0107 ++0.0161 +0.0087 +0.9710 +0.0043 ++0.0065 +0.0214 +0.0022 +0.9700 + ++0.9532 +0.0222 +0.0135 +0.0111 ++0.0167 +0.9509 +0.0056 +0.0269 ++0.0405 +0.0222 +0.9261 +0.0111 ++0.0167 +0.0538 +0.0056 +0.9240 + ++0.9187 +0.0388 +0.0231 +0.0194 ++0.0291 +0.9154 +0.0097 +0.0458 ++0.0693 +0.0388 +0.8725 +0.0194 ++0.0291 +0.0916 +0.0097 +0.8696 + ++0.8451 +0.0749 +0.0425 +0.0375 ++0.0562 +0.8415 +0.0187 +0.0836 ++0.1275 +0.0749 +0.7602 +0.0375 ++0.0562 +0.1671 +0.0187 +0.7580 + + +[4] P-matrix for branch length 0.200000 ++0.9638 +0.0171 +0.0105 +0.0086 ++0.0128 +0.9620 +0.0043 +0.0209 ++0.0314 +0.0171 +0.9429 +0.0086 ++0.0128 +0.0418 +0.0043 +0.9411 +0.9096 +0.0432 +0.0256 +0.0216 +0.0324 +0.9061 +0.0108 +0.0507 @@ -1308,7 +2616,103 @@ [4] CLV 7: [ {(0.00029,0.92543,0.00029,0.00174),(0.00187,0.82109,0.00187,0.01027),(0.00545,0.71184,0.00545,0.02722),(0.01844,0.52960,0.01844,0.07450)} {(0.00011,0.00002,0.88901,0.00002),(0.00065,0.00012,0.73697,0.00012),(0.00176,0.00034,0.58292,0.00034),(0.00495,0.00115,0.34264,0.00115)} {(0.00825,0.00027,0.00027,0.01209),(0.01965,0.00164,0.00166,0.02772),(0.03127,0.00457,0.00464,0.04214),(0.04929,0.01390,0.01432,0.06021)} {(0.00029,0.92543,0.00029,0.00174),(0.00187,0.82109,0.00187,0.01027),(0.00545,0.71184,0.00545,0.02722),(0.01844,0.52960,0.01844,0.07450)} {(0.00007,0.00044,0.00007,0.88570),(0.00047,0.00257,0.00047,0.73185),(0.00136,0.00680,0.00136,0.57945),(0.00461,0.01863,0.00461,0.34959)} {(0.00007,0.00044,0.00007,0.88570),(0.00047,0.00257,0.00047,0.73185),(0.00136,0.00680,0.00136,0.57945),(0.00461,0.01863,0.00461,0.34959)} {(0.00011,0.00002,0.88901,0.00002),(0.00065,0.00012,0.73697,0.00012),(0.00176,0.00034,0.58292,0.00034),(0.00495,0.00115,0.34264,0.00115)} {(0.00029,0.92543,0.00029,0.00174),(0.00187,0.82109,0.00187,0.01027),(0.00545,0.71184,0.00545,0.02722),(0.01844,0.52960,0.01844,0.07450)} {(0.01650,0.01235,0.00054,0.00054),(0.03929,0.02936,0.00331,0.00328),(0.06254,0.04670,0.00928,0.00913),(0.09858,0.07411,0.02865,0.02780)} {(0.92898,0.00016,0.00099,0.00016),(0.82742,0.00105,0.00589,0.00105),(0.71802,0.00306,0.01583,0.00306),(0.52708,0.01037,0.04451,0.01037)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.92898,0.00016,0.00099,0.00016),(0.82742,0.00105,0.00589,0.00105),(0.71802,0.00306,0.01583,0.00306),(0.52708,0.01037,0.04451,0.01037)} {(0.00007,0.00044,0.00007,0.88570),(0.00047,0.00257,0.00047,0.73185),(0.00136,0.00680,0.00136,0.57945),(0.00461,0.01863,0.00461,0.34959)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00015,0.02009,0.00015,0.03930),(0.00093,0.04591,0.00093,0.08668),(0.00272,0.06960,0.00272,0.12558),(0.00922,0.09932,0.00922,0.16139)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.92898,0.00016,0.00099,0.00016),(0.82742,0.00105,0.00589,0.00105),(0.71802,0.00306,0.01583,0.00306),(0.52708,0.01037,0.04451,0.01037)} {(0.92898,0.00016,0.00099,0.00016),(0.82742,0.00105,0.00589,0.00105),(0.71802,0.00306,0.01583,0.00306),(0.52708,0.01037,0.04451,0.01037)} {(0.00011,0.00002,0.88901,0.00002),(0.00065,0.00012,0.73697,0.00012),(0.00176,0.00034,0.58292,0.00034),(0.00495,0.00115,0.34264,0.00115)} ] - TEST alpha(ncats) = 5.00( 4) + TEST alpha(ncats) = 5.00( 4), mode = MEAN + +0.533406 0.819278 1.098473 1.548843 +[5] P-matrix for branch length 0.100000 ++0.9574 +0.0202 +0.0123 +0.0101 ++0.0151 +0.9553 +0.0050 +0.0245 ++0.0369 +0.0202 +0.9328 +0.0101 ++0.0151 +0.0490 +0.0050 +0.9308 + ++0.9357 +0.0306 +0.0184 +0.0153 ++0.0229 +0.9329 +0.0076 +0.0366 ++0.0552 +0.0306 +0.8989 +0.0153 ++0.0229 +0.0731 +0.0076 +0.8963 + ++0.9153 +0.0405 +0.0240 +0.0202 ++0.0303 +0.9119 +0.0101 +0.0477 ++0.0721 +0.0405 +0.8672 +0.0202 ++0.0303 +0.0953 +0.0101 +0.8642 + ++0.8837 +0.0558 +0.0325 +0.0279 ++0.0419 +0.8799 +0.0140 +0.0642 ++0.0976 +0.0558 +0.8187 +0.0279 ++0.0419 +0.1284 +0.0140 +0.8157 + + +[5] P-matrix for branch length 0.200000 ++0.9175 +0.0394 +0.0234 +0.0197 ++0.0295 +0.9142 +0.0098 +0.0464 ++0.0703 +0.0394 +0.8707 +0.0197 ++0.0295 +0.0929 +0.0098 +0.8678 + ++0.8776 +0.0588 +0.0341 +0.0294 ++0.0441 +0.8738 +0.0147 +0.0673 ++0.1024 +0.0588 +0.8094 +0.0294 ++0.0441 +0.1347 +0.0147 +0.8065 + ++0.8413 +0.0768 +0.0435 +0.0384 ++0.0576 +0.8377 +0.0192 +0.0855 ++0.1304 +0.0768 +0.7543 +0.0384 ++0.0576 +0.1709 +0.0192 +0.7523 + ++0.7876 +0.1039 +0.0565 +0.0519 ++0.0779 +0.7856 +0.0260 +0.1105 ++0.1696 +0.1039 +0.6746 +0.0519 ++0.0779 +0.2209 +0.0260 +0.6752 + + +[5] P-matrix for branch length 1.000000 ++0.6773 +0.1617 +0.0802 +0.0808 ++0.1213 +0.6835 +0.0404 +0.1548 ++0.2406 +0.1617 +0.5169 +0.0808 ++0.1213 +0.3097 +0.0404 +0.5287 + ++0.5731 +0.2194 +0.0977 +0.1097 ++0.1646 +0.5939 +0.0549 +0.1866 ++0.2931 +0.2194 +0.3778 +0.1097 ++0.1646 +0.3733 +0.0549 +0.4073 + ++0.5003 +0.2623 +0.1063 +0.1312 ++0.1967 +0.5357 +0.0656 +0.2020 ++0.3188 +0.2623 +0.2878 +0.1312 ++0.1967 +0.4039 +0.0656 +0.3338 + ++0.4226 +0.3111 +0.1108 +0.1555 ++0.2333 +0.4784 +0.0778 +0.2105 ++0.3324 +0.3111 +0.2010 +0.1555 ++0.2333 +0.4210 +0.0778 +0.2679 + + +[5] P-matrix for branch length 1.000000 ++0.6773 +0.1617 +0.0802 +0.0808 ++0.1213 +0.6835 +0.0404 +0.1548 ++0.2406 +0.1617 +0.5169 +0.0808 ++0.1213 +0.3097 +0.0404 +0.5287 + ++0.5731 +0.2194 +0.0977 +0.1097 ++0.1646 +0.5939 +0.0549 +0.1866 ++0.2931 +0.2194 +0.3778 +0.1097 ++0.1646 +0.3733 +0.0549 +0.4073 + ++0.5003 +0.2623 +0.1063 +0.1312 ++0.1967 +0.5357 +0.0656 +0.2020 ++0.3188 +0.2623 +0.2878 +0.1312 ++0.1967 +0.4039 +0.0656 +0.3338 + ++0.4226 +0.3111 +0.1108 +0.1555 ++0.2333 +0.4784 +0.0778 +0.2105 ++0.3324 +0.3111 +0.2010 +0.1555 ++0.2333 +0.4210 +0.0778 +0.2679 + + +[5] CLV 5: [ {(0.03689,0.06943,0.00354,0.08332),(0.05336,0.09740,0.00775,0.11456),(0.06759,0.11986,0.01297,0.13842),(0.08723,0.14800,0.02302,0.16638)} {(0.84189,0.00087,0.00494,0.00087),(0.77025,0.00195,0.01048,0.00195),(0.70775,0.00332,0.01701,0.00332),(0.62036,0.00607,0.02876,0.00607)} {(0.03611,0.02699,0.00277,0.00274),(0.05163,0.03856,0.00602,0.00594),(0.06464,0.04827,0.01002,0.00985),(0.08183,0.06122,0.01762,0.01721)} {(0.00155,0.83579,0.00155,0.00862),(0.00346,0.76358,0.00346,0.01814),(0.00590,0.70176,0.00590,0.02921),(0.01079,0.61724,0.01079,0.04881)} {(0.01806,0.00137,0.00138,0.02561),(0.02582,0.00297,0.00301,0.03558),(0.03232,0.00492,0.00501,0.04335),(0.04091,0.00861,0.00881,0.05261)} {(0.00077,0.04244,0.00077,0.08058),(0.00173,0.05884,0.00173,0.10862),(0.00295,0.07159,0.00295,0.12857),(0.00540,0.08678,0.00540,0.14916)} {(0.00055,0.00010,0.75813,0.00010),(0.00116,0.00022,0.65512,0.00022),(0.00189,0.00037,0.56902,0.00037),(0.00320,0.00067,0.45505,0.00067)} {(0.00155,0.83579,0.00155,0.00862),(0.00346,0.76358,0.00346,0.01814),(0.00590,0.70176,0.00590,0.02921),(0.01079,0.61724,0.01079,0.04881)} {(0.00039,0.00216,0.00039,0.75306),(0.00087,0.00453,0.00087,0.65042),(0.00148,0.00730,0.00148,0.56589),(0.00270,0.01220,0.00270,0.45587)} {(0.84189,0.00087,0.00494,0.00087),(0.77025,0.00195,0.01048,0.00195),(0.70775,0.00332,0.01701,0.00332),(0.62036,0.00607,0.02876,0.00607)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.84189,0.00087,0.00494,0.00087),(0.77025,0.00195,0.01048,0.00195),(0.70775,0.00332,0.01701,0.00332),(0.62036,0.00607,0.02876,0.00607)} {(0.00039,0.00216,0.00039,0.75306),(0.00087,0.00453,0.00087,0.65042),(0.00148,0.00730,0.00148,0.56589),(0.00270,0.01220,0.00270,0.45587)} {(0.00039,0.00216,0.00039,0.75306),(0.00087,0.00453,0.00087,0.65042),(0.00148,0.00730,0.00148,0.56589),(0.00270,0.01220,0.00270,0.45587)} {(0.00092,0.00900,0.03427,0.00091),(0.00201,0.01285,0.04762,0.00198),(0.00334,0.01609,0.05796,0.00328),(0.00587,0.02041,0.07008,0.00574)} {(0.00039,0.00216,0.00039,0.75306),(0.00087,0.00453,0.00087,0.65042),(0.00148,0.00730,0.00148,0.56589),(0.00270,0.01220,0.00270,0.45587)} {(0.03611,0.02699,0.00277,0.00274),(0.05163,0.03856,0.00602,0.00594),(0.06464,0.04827,0.01002,0.00985),(0.08183,0.06122,0.01762,0.01721)} {(0.01806,0.00137,0.00138,0.02561),(0.02582,0.00297,0.00301,0.03558),(0.03232,0.00492,0.00501,0.04335),(0.04091,0.00861,0.00881,0.05261)} {(0.00039,0.00216,0.00039,0.75306),(0.00087,0.00453,0.00087,0.65042),(0.00148,0.00730,0.00148,0.56589),(0.00270,0.01220,0.00270,0.45587)} ] +[5] CLV 6: [ {(0.03450,0.00204,0.00049,0.00241),(0.04810,0.00425,0.00150,0.00490),(0.05874,0.00680,0.00310,0.00768),(0.07147,0.01129,0.00683,0.01237)} {(0.01888,0.00013,0.03110,0.00013),(0.02460,0.00029,0.04212,0.00029),(0.02819,0.00048,0.04979,0.00048),(0.03107,0.00083,0.05705,0.00083)} {(0.03518,0.02641,0.00449,0.00443),(0.04969,0.03741,0.00953,0.00938),(0.06155,0.04655,0.01550,0.01518),(0.07679,0.05865,0.02631,0.02558)} {(0.00073,0.73017,0.00073,0.00455),(0.00158,0.62311,0.00158,0.00972),(0.00265,0.53744,0.00265,0.01579),(0.00475,0.42964,0.00475,0.02644)} {(0.01759,0.00222,0.00224,0.02419),(0.02485,0.00469,0.00477,0.03273),(0.03078,0.00759,0.00775,0.03896),(0.03839,0.01279,0.01315,0.04586)} {(0.00005,0.00197,0.00005,0.06690),(0.00015,0.00397,0.00015,0.08203),(0.00032,0.00611,0.00032,0.08881),(0.00072,0.00953,0.00072,0.08988)} {(0.00023,0.00004,0.61576,0.00004),(0.00045,0.00008,0.47671,0.00008),(0.00067,0.00012,0.37234,0.00012),(0.00100,0.00019,0.25155,0.00019)} {(0.00073,0.73017,0.00073,0.00455),(0.00158,0.62311,0.00158,0.00972),(0.00265,0.53744,0.00265,0.01579),(0.00475,0.42964,0.00475,0.02644)} {(0.00736,0.00061,0.00056,0.02069),(0.00958,0.00124,0.00112,0.02574),(0.01105,0.00194,0.00171,0.02823),(0.01251,0.00313,0.00269,0.02911)} {(0.01888,0.00013,0.03110,0.00013),(0.02460,0.00029,0.04212,0.00029),(0.02819,0.00048,0.04979,0.00048),(0.03107,0.00083,0.05705,0.00083)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.03173,0.01246,0.00141,0.00127),(0.04242,0.01716,0.00306,0.00264),(0.04982,0.02081,0.00507,0.00424),(0.05711,0.02523,0.00879,0.00710)} {(0.00016,0.00095,0.00016,0.60837),(0.00032,0.00189,0.00032,0.47045),(0.00050,0.00288,0.00050,0.36847),(0.00083,0.00444,0.00083,0.25223)} {(0.00016,0.00095,0.00016,0.60837),(0.00032,0.00189,0.00032,0.47045),(0.00050,0.00288,0.00050,0.36847),(0.00083,0.00444,0.00083,0.25223)} {(0.00006,0.00805,0.00127,0.00014),(0.00019,0.01090,0.00255,0.00042),(0.00040,0.01300,0.00394,0.00086),(0.00091,0.01536,0.00616,0.00188)} {(0.00016,0.00095,0.00016,0.60837),(0.00032,0.00189,0.00032,0.47045),(0.00050,0.00288,0.00050,0.36847),(0.00083,0.00444,0.00083,0.25223)} {(0.03228,0.00078,0.00032,0.00013),(0.04361,0.00165,0.00098,0.00041),(0.05178,0.00268,0.00202,0.00087),(0.06048,0.00457,0.00446,0.00199)} {(0.00069,0.00203,0.00009,0.00225),(0.00146,0.00410,0.00028,0.00441),(0.00236,0.00636,0.00060,0.00666),(0.00399,0.01005,0.00137,0.01013)} {(0.00016,0.00095,0.00016,0.60837),(0.00032,0.00189,0.00032,0.47045),(0.00050,0.00288,0.00050,0.36847),(0.00083,0.00444,0.00083,0.25223)} ] +[5] CLV 7: [ {(0.00155,0.83579,0.00155,0.00862),(0.00346,0.76358,0.00346,0.01814),(0.00590,0.70176,0.00590,0.02921),(0.01079,0.61724,0.01079,0.04881)} {(0.00055,0.00010,0.75813,0.00010),(0.00116,0.00022,0.65512,0.00022),(0.00189,0.00037,0.56902,0.00037),(0.00320,0.00067,0.45505,0.00067)} {(0.01806,0.00137,0.00138,0.02561),(0.02582,0.00297,0.00301,0.03558),(0.03232,0.00492,0.00501,0.04335),(0.04091,0.00861,0.00881,0.05261)} {(0.00155,0.83579,0.00155,0.00862),(0.00346,0.76358,0.00346,0.01814),(0.00590,0.70176,0.00590,0.02921),(0.01079,0.61724,0.01079,0.04881)} {(0.00039,0.00216,0.00039,0.75306),(0.00087,0.00453,0.00087,0.65042),(0.00148,0.00730,0.00148,0.56589),(0.00270,0.01220,0.00270,0.45587)} {(0.00039,0.00216,0.00039,0.75306),(0.00087,0.00453,0.00087,0.65042),(0.00148,0.00730,0.00148,0.56589),(0.00270,0.01220,0.00270,0.45587)} {(0.00055,0.00010,0.75813,0.00010),(0.00116,0.00022,0.65512,0.00022),(0.00189,0.00037,0.56902,0.00037),(0.00320,0.00067,0.45505,0.00067)} {(0.00155,0.83579,0.00155,0.00862),(0.00346,0.76358,0.00346,0.01814),(0.00590,0.70176,0.00590,0.02921),(0.01079,0.61724,0.01079,0.04881)} {(0.03611,0.02699,0.00277,0.00274),(0.05163,0.03856,0.00602,0.00594),(0.06464,0.04827,0.01002,0.00985),(0.08183,0.06122,0.01762,0.01721)} {(0.84189,0.00087,0.00494,0.00087),(0.77025,0.00195,0.01048,0.00195),(0.70775,0.00332,0.01701,0.00332),(0.62036,0.00607,0.02876,0.00607)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.84189,0.00087,0.00494,0.00087),(0.77025,0.00195,0.01048,0.00195),(0.70775,0.00332,0.01701,0.00332),(0.62036,0.00607,0.02876,0.00607)} {(0.00039,0.00216,0.00039,0.75306),(0.00087,0.00453,0.00087,0.65042),(0.00148,0.00730,0.00148,0.56589),(0.00270,0.01220,0.00270,0.45587)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00077,0.04244,0.00077,0.08058),(0.00173,0.05884,0.00173,0.10862),(0.00295,0.07159,0.00295,0.12857),(0.00540,0.08678,0.00540,0.14916)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.84189,0.00087,0.00494,0.00087),(0.77025,0.00195,0.01048,0.00195),(0.70775,0.00332,0.01701,0.00332),(0.62036,0.00607,0.02876,0.00607)} {(0.84189,0.00087,0.00494,0.00087),(0.77025,0.00195,0.01048,0.00195),(0.70775,0.00332,0.01701,0.00332),(0.62036,0.00607,0.02876,0.00607)} {(0.00055,0.00010,0.75813,0.00010),(0.00116,0.00022,0.65512,0.00022),(0.00189,0.00037,0.56902,0.00037),(0.00320,0.00067,0.45505,0.00067)} ] + + + TEST alpha(ncats) = 5.00( 4), mode = MEDIAN 0.502078 0.803960 1.083302 1.610660 [5] P-matrix for branch length 0.100000 @@ -1404,7 +2808,103 @@ [5] CLV 7: [ {(0.00138,0.84432,0.00138,0.00774),(0.00334,0.76721,0.00334,0.01757),(0.00576,0.70492,0.00576,0.02858),(0.01154,0.60691,0.01154,0.05155)} {(0.00049,0.00009,0.77044,0.00009),(0.00113,0.00021,0.66024,0.00021),(0.00185,0.00036,0.57337,0.00036),(0.00338,0.00072,0.44147,0.00072)} {(0.01713,0.00123,0.00124,0.02438),(0.02543,0.00287,0.00291,0.03511),(0.03199,0.00481,0.00489,0.04297),(0.04193,0.00915,0.00937,0.05362)} {(0.00138,0.84432,0.00138,0.00774),(0.00334,0.76721,0.00334,0.01757),(0.00576,0.70492,0.00576,0.02858),(0.01154,0.60691,0.01154,0.05155)} {(0.00035,0.00193,0.00035,0.76543),(0.00084,0.00439,0.00084,0.65548),(0.00144,0.00714,0.00144,0.57013),(0.00289,0.01289,0.00289,0.44291)} {(0.00035,0.00193,0.00035,0.76543),(0.00084,0.00439,0.00084,0.65548),(0.00144,0.00714,0.00144,0.57013),(0.00289,0.01289,0.00289,0.44291)} {(0.00049,0.00009,0.77044,0.00009),(0.00113,0.00021,0.66024,0.00021),(0.00185,0.00036,0.57337,0.00036),(0.00338,0.00072,0.44147,0.00072)} {(0.00138,0.84432,0.00138,0.00774),(0.00334,0.76721,0.00334,0.01757),(0.00576,0.70492,0.00576,0.02858),(0.01154,0.60691,0.01154,0.05155)} {(0.03426,0.02561,0.00247,0.00245),(0.05086,0.03798,0.00582,0.00575),(0.06398,0.04778,0.00979,0.00962),(0.08387,0.06277,0.01874,0.01829)} {(0.85026,0.00078,0.00443,0.00078),(0.77388,0.00188,0.01015,0.00188),(0.71097,0.00324,0.01663,0.00324),(0.60952,0.00649,0.03043,0.00649)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.85026,0.00078,0.00443,0.00078),(0.77388,0.00188,0.01015,0.00188),(0.71097,0.00324,0.01663,0.00324),(0.60952,0.00649,0.03043,0.00649)} {(0.00035,0.00193,0.00035,0.76543),(0.00084,0.00439,0.00084,0.65548),(0.00144,0.00714,0.00144,0.57013),(0.00289,0.01289,0.00289,0.44291)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00069,0.04041,0.00069,0.07695),(0.00167,0.05806,0.00167,0.10733),(0.00288,0.07097,0.00288,0.12764),(0.00577,0.08844,0.00577,0.15111)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.85026,0.00078,0.00443,0.00078),(0.77388,0.00188,0.01015,0.00188),(0.71097,0.00324,0.01663,0.00324),(0.60952,0.00649,0.03043,0.00649)} {(0.85026,0.00078,0.00443,0.00078),(0.77388,0.00188,0.01015,0.00188),(0.71097,0.00324,0.01663,0.00324),(0.60952,0.00649,0.03043,0.00649)} {(0.00049,0.00009,0.77044,0.00009),(0.00113,0.00021,0.66024,0.00021),(0.00185,0.00036,0.57337,0.00036),(0.00338,0.00072,0.44147,0.00072)} ] - TEST alpha(ncats) = 10.00( 4) + TEST alpha(ncats) = 10.00( 4), mode = MEAN + +0.659011 0.879765 1.079299 1.381925 +[6] P-matrix for branch length 0.100000 ++0.9478 +0.0248 +0.0150 +0.0124 ++0.0186 +0.9453 +0.0062 +0.0299 ++0.0451 +0.0248 +0.9177 +0.0124 ++0.0186 +0.0598 +0.0062 +0.9154 + ++0.9312 +0.0327 +0.0197 +0.0164 ++0.0246 +0.9282 +0.0082 +0.0390 ++0.0590 +0.0327 +0.8919 +0.0164 ++0.0246 +0.0780 +0.0082 +0.8892 + ++0.9166 +0.0398 +0.0237 +0.0199 ++0.0298 +0.9133 +0.0099 +0.0469 ++0.0710 +0.0398 +0.8693 +0.0199 ++0.0298 +0.0938 +0.0099 +0.8664 + ++0.8952 +0.0502 +0.0295 +0.0251 ++0.0377 +0.8915 +0.0126 +0.0583 ++0.0884 +0.0502 +0.8363 +0.0251 ++0.0377 +0.1165 +0.0126 +0.8332 + + +[6] P-matrix for branch length 0.200000 ++0.8997 +0.0480 +0.0283 +0.0240 ++0.0360 +0.8960 +0.0120 +0.0559 ++0.0848 +0.0480 +0.8431 +0.0240 ++0.0360 +0.1119 +0.0120 +0.8401 + ++0.8695 +0.0628 +0.0362 +0.0314 ++0.0471 +0.8657 +0.0157 +0.0715 ++0.1087 +0.0628 +0.7971 +0.0314 ++0.0471 +0.1429 +0.0157 +0.7943 + ++0.8437 +0.0756 +0.0429 +0.0378 ++0.0567 +0.8401 +0.0189 +0.0843 ++0.1286 +0.0756 +0.7580 +0.0378 ++0.0567 +0.1686 +0.0189 +0.7558 + ++0.8068 +0.0941 +0.0520 +0.0471 ++0.0706 +0.8041 +0.0235 +0.1018 ++0.1559 +0.0941 +0.7029 +0.0471 ++0.0706 +0.2035 +0.0235 +0.7023 + + +[6] P-matrix for branch length 1.000000 ++0.6271 +0.1890 +0.0893 +0.0945 ++0.1418 +0.6395 +0.0473 +0.1715 ++0.2679 +0.1890 +0.4486 +0.0945 ++0.1418 +0.3430 +0.0473 +0.4680 + ++0.5553 +0.2297 +0.1001 +0.1149 ++0.1723 +0.5793 +0.0574 +0.1910 ++0.3003 +0.2297 +0.3551 +0.1149 ++0.1723 +0.3820 +0.0574 +0.3883 + ++0.5046 +0.2597 +0.1058 +0.1299 ++0.1948 +0.5390 +0.0649 +0.2012 ++0.3175 +0.2597 +0.2929 +0.1299 ++0.1948 +0.4025 +0.0649 +0.3378 + ++0.4469 +0.2954 +0.1100 +0.1477 ++0.2216 +0.4958 +0.0739 +0.2088 ++0.3300 +0.2954 +0.2269 +0.1477 ++0.2216 +0.4176 +0.0739 +0.2870 + + +[6] P-matrix for branch length 1.000000 ++0.6271 +0.1890 +0.0893 +0.0945 ++0.1418 +0.6395 +0.0473 +0.1715 ++0.2679 +0.1890 +0.4486 +0.0945 ++0.1418 +0.3430 +0.0473 +0.4680 + ++0.5553 +0.2297 +0.1001 +0.1149 ++0.1723 +0.5793 +0.0574 +0.1910 ++0.3003 +0.2297 +0.3551 +0.1149 ++0.1723 +0.3820 +0.0574 +0.3883 + ++0.5046 +0.2597 +0.1058 +0.1299 ++0.1948 +0.5390 +0.0649 +0.2012 ++0.3175 +0.2597 +0.2929 +0.1299 ++0.1948 +0.4025 +0.0649 +0.3378 + ++0.4469 +0.2954 +0.1100 +0.1477 ++0.2216 +0.4958 +0.0739 +0.2088 ++0.3300 +0.2954 +0.2269 +0.1477 ++0.2216 +0.4176 +0.0739 +0.2870 + + +[6] CLV 5: [ {(0.04438,0.08240,0.00523,0.09800),(0.05659,0.10264,0.00880,0.12024),(0.06667,0.11845,0.01258,0.13696),(0.08039,0.13860,0.01911,0.15730)} {(0.80939,0.00130,0.00719,0.00130),(0.75611,0.00222,0.01182,0.00222),(0.71182,0.00322,0.01653,0.00322),(0.65097,0.00498,0.02430,0.00498)} {(0.04322,0.03229,0.00407,0.00403),(0.05462,0.04078,0.00683,0.00673),(0.06381,0.04765,0.00972,0.00956),(0.07595,0.05677,0.01468,0.01437)} {(0.00231,0.80286,0.00231,0.01251),(0.00395,0.74950,0.00395,0.02042),(0.00572,0.70576,0.00572,0.02841),(0.00886,0.64658,0.00886,0.04142)} {(0.02161,0.00202,0.00204,0.03027),(0.02731,0.00337,0.00341,0.03742),(0.03190,0.00478,0.00486,0.04287),(0.03798,0.00718,0.00734,0.04959)} {(0.00115,0.05011,0.00115,0.09397),(0.00197,0.06186,0.00197,0.11350),(0.00286,0.07080,0.00286,0.12740),(0.00443,0.08182,0.00443,0.14294)} {(0.00080,0.00014,0.71086,0.00014),(0.00131,0.00025,0.63534,0.00025),(0.00184,0.00036,0.57452,0.00036),(0.00270,0.00055,0.49407,0.00055)} {(0.00231,0.80286,0.00231,0.01251),(0.00395,0.74950,0.00395,0.02042),(0.00572,0.70576,0.00572,0.02841),(0.00886,0.64658,0.00886,0.04142)} {(0.00058,0.00313,0.00058,0.70576),(0.00099,0.00511,0.00099,0.63089),(0.00143,0.00710,0.00143,0.57126),(0.00222,0.01035,0.00222,0.49329)} {(0.80939,0.00130,0.00719,0.00130),(0.75611,0.00222,0.01182,0.00222),(0.71182,0.00322,0.01653,0.00322),(0.65097,0.00498,0.02430,0.00498)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.80939,0.00130,0.00719,0.00130),(0.75611,0.00222,0.01182,0.00222),(0.71182,0.00322,0.01653,0.00322),(0.65097,0.00498,0.02430,0.00498)} {(0.00058,0.00313,0.00058,0.70576),(0.00099,0.00511,0.00099,0.63089),(0.00143,0.00710,0.00143,0.57126),(0.00222,0.01035,0.00222,0.49329)} {(0.00058,0.00313,0.00058,0.70576),(0.00099,0.00511,0.00099,0.63089),(0.00143,0.00710,0.00143,0.57126),(0.00222,0.01035,0.00222,0.49329)} {(0.00136,0.01076,0.04051,0.00134),(0.00228,0.01359,0.05007,0.00224),(0.00324,0.01588,0.05732,0.00319),(0.00489,0.01892,0.06617,0.00479)} {(0.00058,0.00313,0.00058,0.70576),(0.00099,0.00511,0.00099,0.63089),(0.00143,0.00710,0.00143,0.57126),(0.00222,0.01035,0.00222,0.49329)} {(0.04322,0.03229,0.00407,0.00403),(0.05462,0.04078,0.00683,0.00673),(0.06381,0.04765,0.00972,0.00956),(0.07595,0.05677,0.01468,0.01437)} {(0.02161,0.00202,0.00204,0.03027),(0.02731,0.00337,0.00341,0.03742),(0.03190,0.00478,0.00486,0.04287),(0.03798,0.00718,0.00734,0.04959)} {(0.00058,0.00313,0.00058,0.70576),(0.00099,0.00511,0.00099,0.63089),(0.00143,0.00710,0.00143,0.57126),(0.00222,0.01035,0.00222,0.49329)} ] +[6] CLV 6: [ {(0.04084,0.00294,0.00085,0.00344),(0.05061,0.00478,0.00180,0.00548),(0.05809,0.00662,0.00297,0.00748),(0.06732,0.00960,0.00530,0.01063)} {(0.02169,0.00020,0.03638,0.00020),(0.02552,0.00033,0.04402,0.00033),(0.02799,0.00046,0.04935,0.00046),(0.03034,0.00070,0.05499,0.00070)} {(0.04188,0.03147,0.00654,0.00645),(0.05244,0.03952,0.01076,0.01057),(0.06080,0.04597,0.01507,0.01476),(0.07164,0.05450,0.02220,0.02163)} {(0.00107,0.68043,0.00107,0.00666),(0.00180,0.60310,0.00180,0.01097),(0.00257,0.54281,0.00257,0.01535),(0.00393,0.46581,0.00393,0.02245)} {(0.02094,0.00322,0.00327,0.02825),(0.02622,0.00528,0.00538,0.03423),(0.03040,0.00738,0.00754,0.03859),(0.03582,0.01082,0.01110,0.04368)} {(0.00008,0.00281,0.00008,0.07481),(0.00018,0.00442,0.00018,0.08405),(0.00030,0.00596,0.00030,0.08853),(0.00056,0.00829,0.00056,0.09050)} {(0.00032,0.00005,0.55007,0.00005),(0.00050,0.00009,0.45175,0.00009),(0.00066,0.00012,0.37868,0.00012),(0.00088,0.00016,0.29062,0.00016)} {(0.00107,0.68043,0.00107,0.00666),(0.00180,0.60310,0.00180,0.01097),(0.00257,0.54281,0.00257,0.01535),(0.00393,0.46581,0.00393,0.02245)} {(0.00844,0.00087,0.00080,0.02329),(0.00994,0.00138,0.00124,0.02645),(0.01096,0.00189,0.00167,0.02811),(0.01207,0.00269,0.00233,0.02911)} {(0.02169,0.00020,0.03638,0.00020),(0.02552,0.00033,0.04402,0.00033),(0.02799,0.00046,0.04935,0.00046),(0.03034,0.00070,0.05499,0.00070)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.03686,0.01466,0.00207,0.00183),(0.04425,0.01802,0.00347,0.00297),(0.04939,0.02058,0.00492,0.00413),(0.05496,0.02377,0.00737,0.00602)} {(0.00023,0.00135,0.00023,0.54293),(0.00036,0.00210,0.00036,0.44593),(0.00049,0.00281,0.00049,0.37462),(0.00070,0.00388,0.00070,0.28962)} {(0.00023,0.00135,0.00023,0.54293),(0.00036,0.00210,0.00036,0.44593),(0.00049,0.00281,0.00049,0.37462),(0.00070,0.00388,0.00070,0.28962)} {(0.00010,0.00940,0.00180,0.00024),(0.00023,0.01140,0.00284,0.00050),(0.00038,0.01287,0.00384,0.00083),(0.00070,0.01461,0.00535,0.00147)} {(0.00023,0.00135,0.00023,0.54293),(0.00036,0.00210,0.00036,0.44593),(0.00049,0.00281,0.00049,0.37462),(0.00070,0.00388,0.00070,0.28962)} {(0.03768,0.00113,0.00055,0.00023),(0.04560,0.00186,0.00117,0.00050),(0.05130,0.00261,0.00194,0.00084),(0.05780,0.00385,0.00346,0.00153)} {(0.00101,0.00289,0.00016,0.00316),(0.00165,0.00457,0.00034,0.00489),(0.00230,0.00620,0.00057,0.00650),(0.00337,0.00870,0.00104,0.00889)} {(0.00023,0.00135,0.00023,0.54293),(0.00036,0.00210,0.00036,0.44593),(0.00049,0.00281,0.00049,0.37462),(0.00070,0.00388,0.00070,0.28962)} ] +[6] CLV 7: [ {(0.00231,0.80286,0.00231,0.01251),(0.00395,0.74950,0.00395,0.02042),(0.00572,0.70576,0.00572,0.02841),(0.00886,0.64658,0.00886,0.04142)} {(0.00080,0.00014,0.71086,0.00014),(0.00131,0.00025,0.63534,0.00025),(0.00184,0.00036,0.57452,0.00036),(0.00270,0.00055,0.49407,0.00055)} {(0.02161,0.00202,0.00204,0.03027),(0.02731,0.00337,0.00341,0.03742),(0.03190,0.00478,0.00486,0.04287),(0.03798,0.00718,0.00734,0.04959)} {(0.00231,0.80286,0.00231,0.01251),(0.00395,0.74950,0.00395,0.02042),(0.00572,0.70576,0.00572,0.02841),(0.00886,0.64658,0.00886,0.04142)} {(0.00058,0.00313,0.00058,0.70576),(0.00099,0.00511,0.00099,0.63089),(0.00143,0.00710,0.00143,0.57126),(0.00222,0.01035,0.00222,0.49329)} {(0.00058,0.00313,0.00058,0.70576),(0.00099,0.00511,0.00099,0.63089),(0.00143,0.00710,0.00143,0.57126),(0.00222,0.01035,0.00222,0.49329)} {(0.00080,0.00014,0.71086,0.00014),(0.00131,0.00025,0.63534,0.00025),(0.00184,0.00036,0.57452,0.00036),(0.00270,0.00055,0.49407,0.00055)} {(0.00231,0.80286,0.00231,0.01251),(0.00395,0.74950,0.00395,0.02042),(0.00572,0.70576,0.00572,0.02841),(0.00886,0.64658,0.00886,0.04142)} {(0.04322,0.03229,0.00407,0.00403),(0.05462,0.04078,0.00683,0.00673),(0.06381,0.04765,0.00972,0.00956),(0.07595,0.05677,0.01468,0.01437)} {(0.80939,0.00130,0.00719,0.00130),(0.75611,0.00222,0.01182,0.00222),(0.71182,0.00322,0.01653,0.00322),(0.65097,0.00498,0.02430,0.00498)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.80939,0.00130,0.00719,0.00130),(0.75611,0.00222,0.01182,0.00222),(0.71182,0.00322,0.01653,0.00322),(0.65097,0.00498,0.02430,0.00498)} {(0.00058,0.00313,0.00058,0.70576),(0.00099,0.00511,0.00099,0.63089),(0.00143,0.00710,0.00143,0.57126),(0.00222,0.01035,0.00222,0.49329)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00115,0.05011,0.00115,0.09397),(0.00197,0.06186,0.00197,0.11350),(0.00286,0.07080,0.00286,0.12740),(0.00443,0.08182,0.00443,0.14294)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.80939,0.00130,0.00719,0.00130),(0.75611,0.00222,0.01182,0.00222),(0.71182,0.00322,0.01653,0.00322),(0.65097,0.00498,0.02430,0.00498)} {(0.80939,0.00130,0.00719,0.00130),(0.75611,0.00222,0.01182,0.00222),(0.71182,0.00322,0.01653,0.00322),(0.65097,0.00498,0.02430,0.00498)} {(0.00080,0.00014,0.71086,0.00014),(0.00131,0.00025,0.63534,0.00025),(0.00184,0.00036,0.57452,0.00036),(0.00270,0.00055,0.49407,0.00055)} ] + + + TEST alpha(ncats) = 10.00( 4), mode = MEDIAN 0.631472 0.870888 1.072336 1.425304 [6] P-matrix for branch length 0.100000 @@ -1500,7 +3000,103 @@ [6] CLV 7: [ {(0.00213,0.80992,0.00213,0.01162),(0.00387,0.75154,0.00387,0.02008),(0.00565,0.70722,0.00565,0.02812),(0.00935,0.63875,0.00935,0.04333)} {(0.00074,0.00013,0.72095,0.00013),(0.00129,0.00024,0.63820,0.00024),(0.00182,0.00035,0.57654,0.00035),(0.00283,0.00058,0.48359,0.00058)} {(0.02085,0.00187,0.00189,0.02929),(0.02709,0.00331,0.00335,0.03716),(0.03175,0.00473,0.00481,0.04269),(0.03877,0.00755,0.00771,0.05042)} {(0.00213,0.80992,0.00213,0.01162),(0.00387,0.75154,0.00387,0.02008),(0.00565,0.70722,0.00565,0.02812),(0.00935,0.63875,0.00935,0.04333)} {(0.00053,0.00290,0.00053,0.71583),(0.00097,0.00502,0.00097,0.63371),(0.00141,0.00703,0.00141,0.57322),(0.00234,0.01083,0.00234,0.48322)} {(0.00053,0.00290,0.00053,0.71583),(0.00097,0.00502,0.00097,0.63371),(0.00141,0.00703,0.00141,0.57322),(0.00234,0.01083,0.00234,0.48322)} {(0.00074,0.00013,0.72095,0.00013),(0.00129,0.00024,0.63820,0.00024),(0.00182,0.00035,0.57654,0.00035),(0.00283,0.00058,0.48359,0.00058)} {(0.00213,0.80992,0.00213,0.01162),(0.00387,0.75154,0.00387,0.02008),(0.00565,0.70722,0.00565,0.02812),(0.00935,0.63875,0.00935,0.04333)} {(0.04171,0.03116,0.00377,0.00373),(0.05419,0.04046,0.00671,0.00661),(0.06350,0.04742,0.00962,0.00946),(0.07753,0.05797,0.01543,0.01510)} {(0.81638,0.00120,0.00667,0.00120),(0.75816,0.00218,0.01162,0.00218),(0.71331,0.00318,0.01636,0.00318),(0.64283,0.00526,0.02545,0.00526)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.81638,0.00120,0.00667,0.00120),(0.75816,0.00218,0.01162,0.00218),(0.71331,0.00318,0.01636,0.00318),(0.64283,0.00526,0.02545,0.00526)} {(0.00053,0.00290,0.00053,0.71583),(0.00097,0.00502,0.00097,0.63371),(0.00141,0.00703,0.00141,0.57322),(0.00234,0.01083,0.00234,0.48322)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00107,0.04850,0.00107,0.09119),(0.00194,0.06142,0.00194,0.11281),(0.00283,0.07051,0.00283,0.12697),(0.00468,0.08318,0.00468,0.14470)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.81638,0.00120,0.00667,0.00120),(0.75816,0.00218,0.01162,0.00218),(0.71331,0.00318,0.01636,0.00318),(0.64283,0.00526,0.02545,0.00526)} {(0.81638,0.00120,0.00667,0.00120),(0.75816,0.00218,0.01162,0.00218),(0.71331,0.00318,0.01636,0.00318),(0.64283,0.00526,0.02545,0.00526)} {(0.00074,0.00013,0.72095,0.00013),(0.00129,0.00024,0.63820,0.00024),(0.00182,0.00035,0.57654,0.00035),(0.00283,0.00058,0.48359,0.00058)} ] - TEST alpha(ncats) = 50.00( 4) + TEST alpha(ncats) = 50.00( 4), mode = MEAN + +0.841595 0.950947 1.040899 1.166559 +[7] P-matrix for branch length 0.100000 ++0.9341 +0.0314 +0.0189 +0.0157 ++0.0235 +0.9311 +0.0078 +0.0375 ++0.0566 +0.0314 +0.8963 +0.0157 ++0.0235 +0.0749 +0.0078 +0.8937 + ++0.9260 +0.0353 +0.0211 +0.0176 ++0.0265 +0.9229 +0.0088 +0.0419 ++0.0633 +0.0353 +0.8838 +0.0176 ++0.0265 +0.0837 +0.0088 +0.8810 + ++0.9194 +0.0384 +0.0229 +0.0192 ++0.0288 +0.9161 +0.0096 +0.0454 ++0.0687 +0.0384 +0.8736 +0.0192 ++0.0288 +0.0908 +0.0096 +0.8707 + ++0.9104 +0.0428 +0.0254 +0.0214 ++0.0321 +0.9069 +0.0107 +0.0503 ++0.0761 +0.0428 +0.8596 +0.0214 ++0.0321 +0.1005 +0.0107 +0.8566 + + +[7] P-matrix for branch length 0.200000 ++0.8746 +0.0603 +0.0349 +0.0302 ++0.0452 +0.8708 +0.0151 +0.0689 ++0.1047 +0.0603 +0.8048 +0.0302 ++0.0452 +0.1377 +0.0151 +0.8020 + ++0.8602 +0.0674 +0.0387 +0.0337 ++0.0506 +0.8564 +0.0169 +0.0762 ++0.1160 +0.0674 +0.7829 +0.0337 ++0.0506 +0.1523 +0.0169 +0.7803 + ++0.8486 +0.0732 +0.0416 +0.0366 ++0.0549 +0.8449 +0.0183 +0.0819 ++0.1249 +0.0732 +0.7653 +0.0366 ++0.0549 +0.1638 +0.0183 +0.7630 + ++0.8328 +0.0811 +0.0456 +0.0405 ++0.0608 +0.8294 +0.0203 +0.0896 ++0.1368 +0.0811 +0.7416 +0.0405 ++0.0608 +0.1791 +0.0203 +0.7398 + + +[7] P-matrix for branch length 1.000000 ++0.5664 +0.2233 +0.0986 +0.1117 ++0.1675 +0.5884 +0.0558 +0.1883 ++0.2959 +0.2233 +0.3692 +0.1117 ++0.1675 +0.3766 +0.0558 +0.4000 + ++0.5358 +0.2411 +0.1025 +0.1206 ++0.1808 +0.5636 +0.0603 +0.1953 ++0.3075 +0.2411 +0.3308 +0.1206 ++0.1808 +0.3906 +0.0603 +0.3683 + ++0.5134 +0.2544 +0.1050 +0.1272 ++0.1908 +0.5459 +0.0636 +0.1997 ++0.3149 +0.2544 +0.3035 +0.1272 ++0.1908 +0.3993 +0.0636 +0.3463 + ++0.4858 +0.2711 +0.1075 +0.1356 ++0.2033 +0.5247 +0.0678 +0.2042 ++0.3225 +0.2711 +0.2708 +0.1356 ++0.2033 +0.4084 +0.0678 +0.3205 + + +[7] P-matrix for branch length 1.000000 ++0.5664 +0.2233 +0.0986 +0.1117 ++0.1675 +0.5884 +0.0558 +0.1883 ++0.2959 +0.2233 +0.3692 +0.1117 ++0.1675 +0.3766 +0.0558 +0.4000 + ++0.5358 +0.2411 +0.1025 +0.1206 ++0.1808 +0.5636 +0.0603 +0.1953 ++0.3075 +0.2411 +0.3308 +0.1206 ++0.1808 +0.3906 +0.0603 +0.3683 + ++0.5134 +0.2544 +0.1050 +0.1272 ++0.1908 +0.5459 +0.0636 +0.1997 ++0.3149 +0.2544 +0.3035 +0.1272 ++0.1908 +0.3993 +0.0636 +0.3463 + ++0.4858 +0.2711 +0.1075 +0.1356 ++0.2033 +0.5247 +0.0678 +0.2042 ++0.3225 +0.2711 +0.2708 +0.1356 ++0.2033 +0.4084 +0.0678 +0.3205 + + +[7] CLV 5: [ {(0.05456,0.09936,0.00813,0.11669),(0.06029,0.10854,0.01010,0.12654),(0.06479,0.11558,0.01182,0.13396),(0.07081,0.12471,0.01438,0.14340)} {(0.76499,0.00205,0.01097,0.00205),(0.73991,0.00256,0.01345,0.00256),(0.72008,0.00301,0.01559,0.00301),(0.69353,0.00370,0.01871,0.00370)} {(0.05275,0.03939,0.00631,0.00623),(0.05801,0.04332,0.00782,0.00770),(0.06212,0.04639,0.00914,0.00899),(0.06752,0.05043,0.01109,0.01089)} {(0.00364,0.75834,0.00364,0.01897),(0.00455,0.73343,0.00455,0.02320),(0.00536,0.71387,0.00536,0.02683),(0.00657,0.68785,0.00657,0.03208)} {(0.02637,0.00311,0.00316,0.03627),(0.02901,0.00385,0.00391,0.03947),(0.03106,0.00450,0.00457,0.04189),(0.03376,0.00545,0.00555,0.04499)} {(0.00182,0.05997,0.00182,0.11046),(0.00227,0.06522,0.00227,0.11884),(0.00268,0.06919,0.00268,0.12497),(0.00329,0.07427,0.00329,0.13251)} {(0.00122,0.00023,0.64775,0.00023),(0.00149,0.00028,0.61287,0.00028),(0.00173,0.00033,0.58572,0.00033),(0.00208,0.00041,0.54995,0.00041)} {(0.00364,0.75834,0.00364,0.01897),(0.00455,0.73343,0.00455,0.02320),(0.00536,0.71387,0.00536,0.02683),(0.00657,0.68785,0.00657,0.03208)} {(0.00091,0.00474,0.00091,0.64313),(0.00114,0.00580,0.00114,0.60879),(0.00134,0.00671,0.00134,0.58219),(0.00164,0.00802,0.00164,0.54733)} {(0.76499,0.00205,0.01097,0.00205),(0.73991,0.00256,0.01345,0.00256),(0.72008,0.00301,0.01559,0.00301),(0.69353,0.00370,0.01871,0.00370)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.76499,0.00205,0.01097,0.00205),(0.73991,0.00256,0.01345,0.00256),(0.72008,0.00301,0.01559,0.00301),(0.69353,0.00370,0.01871,0.00370)} {(0.00091,0.00474,0.00091,0.64313),(0.00114,0.00580,0.00114,0.60879),(0.00134,0.00671,0.00134,0.58219),(0.00164,0.00802,0.00164,0.54733)} {(0.00091,0.00474,0.00091,0.64313),(0.00114,0.00580,0.00114,0.60879),(0.00134,0.00671,0.00134,0.58219),(0.00164,0.00802,0.00164,0.54733)} {(0.00210,0.01313,0.04854,0.00208),(0.00261,0.01444,0.05280,0.00257),(0.00305,0.01546,0.05602,0.00300),(0.00370,0.01681,0.06013,0.00363)} {(0.00091,0.00474,0.00091,0.64313),(0.00114,0.00580,0.00114,0.60879),(0.00134,0.00671,0.00134,0.58219),(0.00164,0.00802,0.00164,0.54733)} {(0.05275,0.03939,0.00631,0.00623),(0.05801,0.04332,0.00782,0.00770),(0.06212,0.04639,0.00914,0.00899),(0.06752,0.05043,0.01109,0.01089)} {(0.02637,0.00311,0.00316,0.03627),(0.02901,0.00385,0.00391,0.03947),(0.03106,0.00450,0.00457,0.04189),(0.03376,0.00545,0.00555,0.04499)} {(0.00091,0.00474,0.00091,0.64313),(0.00114,0.00580,0.00114,0.60879),(0.00134,0.00671,0.00134,0.58219),(0.00164,0.00802,0.00164,0.54733)} ] +[7] CLV 6: [ {(0.04904,0.00444,0.00161,0.00511),(0.05342,0.00542,0.00218,0.00618),(0.05674,0.00626,0.00272,0.00709),(0.06099,0.00746,0.00358,0.00838)} {(0.02495,0.00030,0.04284,0.00030),(0.02650,0.00037,0.04608,0.00037),(0.02758,0.00044,0.04843,0.00044),(0.02882,0.00053,0.05126,0.00053)} {(0.05072,0.03820,0.00998,0.00981),(0.05555,0.04190,0.01225,0.01202),(0.05928,0.04478,0.01421,0.01392),(0.06414,0.04857,0.01707,0.01669)} {(0.00166,0.61563,0.00166,0.01018),(0.00206,0.58062,0.00206,0.01249),(0.00242,0.55377,0.00242,0.01448),(0.00294,0.51895,0.00294,0.01736)} {(0.02536,0.00491,0.00499,0.03329),(0.02777,0.00601,0.00612,0.03589),(0.02964,0.00696,0.00711,0.03782),(0.03207,0.00834,0.00853,0.04023)} {(0.00016,0.00413,0.00016,0.08282),(0.00022,0.00497,0.00022,0.08601),(0.00028,0.00566,0.00028,0.08790),(0.00037,0.00664,0.00037,0.08960)} {(0.00047,0.00008,0.46734,0.00008),(0.00055,0.00010,0.42412,0.00010),(0.00063,0.00011,0.39171,0.00011),(0.00072,0.00013,0.35072,0.00013)} {(0.00166,0.61563,0.00166,0.01018),(0.00206,0.58062,0.00206,0.01249),(0.00242,0.55377,0.00242,0.01448),(0.00294,0.51895,0.00294,0.01736)} {(0.00971,0.00129,0.00116,0.02601),(0.01034,0.00156,0.00139,0.02716),(0.01079,0.00179,0.00159,0.02787),(0.01133,0.00212,0.00186,0.02856)} {(0.02495,0.00030,0.04284,0.00030),(0.02650,0.00037,0.04608,0.00037),(0.02758,0.00044,0.04843,0.00044),(0.02882,0.00053,0.05126,0.00053)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.04311,0.01748,0.00321,0.00276),(0.04624,0.01898,0.00397,0.00338),(0.04850,0.02012,0.00463,0.00390),(0.05125,0.02158,0.00560,0.00466)} {(0.00033,0.00197,0.00033,0.46123),(0.00041,0.00235,0.00041,0.41889),(0.00047,0.00267,0.00047,0.38729),(0.00055,0.00312,0.00055,0.34752)} {(0.00033,0.00197,0.00033,0.46123),(0.00041,0.00235,0.00041,0.41889),(0.00047,0.00267,0.00047,0.38729),(0.00055,0.00312,0.00055,0.34752)} {(0.00020,0.01109,0.00266,0.00045),(0.00028,0.01196,0.00320,0.00061),(0.00035,0.01261,0.00365,0.00076),(0.00046,0.01343,0.00428,0.00100)} {(0.00033,0.00197,0.00033,0.46123),(0.00041,0.00235,0.00041,0.41889),(0.00047,0.00267,0.00047,0.38729),(0.00055,0.00312,0.00055,0.34752)} {(0.04436,0.00173,0.00105,0.00044),(0.04778,0.00212,0.00142,0.00061),(0.05030,0.00246,0.00177,0.00076),(0.05342,0.00295,0.00233,0.00101)} {(0.00153,0.00427,0.00030,0.00459),(0.00187,0.00515,0.00041,0.00547),(0.00217,0.00588,0.00052,0.00619),(0.00260,0.00692,0.00069,0.00721)} {(0.00033,0.00197,0.00033,0.46123),(0.00041,0.00235,0.00041,0.41889),(0.00047,0.00267,0.00047,0.38729),(0.00055,0.00312,0.00055,0.34752)} ] +[7] CLV 7: [ {(0.00364,0.75834,0.00364,0.01897),(0.00455,0.73343,0.00455,0.02320),(0.00536,0.71387,0.00536,0.02683),(0.00657,0.68785,0.00657,0.03208)} {(0.00122,0.00023,0.64775,0.00023),(0.00149,0.00028,0.61287,0.00028),(0.00173,0.00033,0.58572,0.00033),(0.00208,0.00041,0.54995,0.00041)} {(0.02637,0.00311,0.00316,0.03627),(0.02901,0.00385,0.00391,0.03947),(0.03106,0.00450,0.00457,0.04189),(0.03376,0.00545,0.00555,0.04499)} {(0.00364,0.75834,0.00364,0.01897),(0.00455,0.73343,0.00455,0.02320),(0.00536,0.71387,0.00536,0.02683),(0.00657,0.68785,0.00657,0.03208)} {(0.00091,0.00474,0.00091,0.64313),(0.00114,0.00580,0.00114,0.60879),(0.00134,0.00671,0.00134,0.58219),(0.00164,0.00802,0.00164,0.54733)} {(0.00091,0.00474,0.00091,0.64313),(0.00114,0.00580,0.00114,0.60879),(0.00134,0.00671,0.00134,0.58219),(0.00164,0.00802,0.00164,0.54733)} {(0.00122,0.00023,0.64775,0.00023),(0.00149,0.00028,0.61287,0.00028),(0.00173,0.00033,0.58572,0.00033),(0.00208,0.00041,0.54995,0.00041)} {(0.00364,0.75834,0.00364,0.01897),(0.00455,0.73343,0.00455,0.02320),(0.00536,0.71387,0.00536,0.02683),(0.00657,0.68785,0.00657,0.03208)} {(0.05275,0.03939,0.00631,0.00623),(0.05801,0.04332,0.00782,0.00770),(0.06212,0.04639,0.00914,0.00899),(0.06752,0.05043,0.01109,0.01089)} {(0.76499,0.00205,0.01097,0.00205),(0.73991,0.00256,0.01345,0.00256),(0.72008,0.00301,0.01559,0.00301),(0.69353,0.00370,0.01871,0.00370)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.76499,0.00205,0.01097,0.00205),(0.73991,0.00256,0.01345,0.00256),(0.72008,0.00301,0.01559,0.00301),(0.69353,0.00370,0.01871,0.00370)} {(0.00091,0.00474,0.00091,0.64313),(0.00114,0.00580,0.00114,0.60879),(0.00134,0.00671,0.00134,0.58219),(0.00164,0.00802,0.00164,0.54733)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00182,0.05997,0.00182,0.11046),(0.00227,0.06522,0.00227,0.11884),(0.00268,0.06919,0.00268,0.12497),(0.00329,0.07427,0.00329,0.13251)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.76499,0.00205,0.01097,0.00205),(0.73991,0.00256,0.01345,0.00256),(0.72008,0.00301,0.01559,0.00301),(0.69353,0.00370,0.01871,0.00370)} {(0.76499,0.00205,0.01097,0.00205),(0.73991,0.00256,0.01345,0.00256),(0.72008,0.00301,0.01559,0.00301),(0.69353,0.00370,0.01871,0.00370)} {(0.00122,0.00023,0.64775,0.00023),(0.00149,0.00028,0.61287,0.00028),(0.00173,0.00033,0.58572,0.00033),(0.00208,0.00041,0.54995,0.00041)} ] + + + TEST alpha(ncats) = 50.00( 4), mode = MEDIAN 0.826400 0.948551 1.040033 1.185016 [7] P-matrix for branch length 0.100000 @@ -1596,7 +3192,103 @@ [7] CLV 7: [ {(0.00352,0.76190,0.00352,0.01840),(0.00453,0.73396,0.00453,0.02310),(0.00535,0.71405,0.00535,0.02679),(0.00676,0.68416,0.00676,0.03287)} {(0.00118,0.00022,0.65276,0.00022),(0.00149,0.00028,0.61362,0.00028),(0.00173,0.00033,0.58597,0.00033),(0.00213,0.00042,0.54490,0.00042)} {(0.02599,0.00302,0.00306,0.03580),(0.02895,0.00384,0.00389,0.03940),(0.03104,0.00449,0.00456,0.04187),(0.03414,0.00559,0.00569,0.04541)} {(0.00352,0.76190,0.00352,0.01840),(0.00453,0.73396,0.00453,0.02310),(0.00535,0.71405,0.00535,0.02679),(0.00676,0.68416,0.00676,0.03287)} {(0.00088,0.00460,0.00088,0.64809),(0.00113,0.00578,0.00113,0.60952),(0.00134,0.00670,0.00134,0.58244),(0.00169,0.00822,0.00169,0.54242)} {(0.00088,0.00460,0.00088,0.64809),(0.00113,0.00578,0.00113,0.60952),(0.00134,0.00670,0.00134,0.58244),(0.00169,0.00822,0.00169,0.54242)} {(0.00118,0.00022,0.65276,0.00022),(0.00149,0.00028,0.61362,0.00028),(0.00173,0.00033,0.58597,0.00033),(0.00213,0.00042,0.54490,0.00042)} {(0.00352,0.76190,0.00352,0.01840),(0.00453,0.73396,0.00453,0.02310),(0.00535,0.71405,0.00535,0.02679),(0.00676,0.68416,0.00676,0.03287)} {(0.05199,0.03882,0.00611,0.00603),(0.05790,0.04323,0.00779,0.00767),(0.06208,0.04636,0.00913,0.00898),(0.06828,0.05100,0.01139,0.01118)} {(0.76856,0.00198,0.01063,0.00198),(0.74045,0.00255,0.01339,0.00255),(0.72026,0.00301,0.01557,0.00301),(0.68974,0.00380,0.01918,0.00380)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.76856,0.00198,0.01063,0.00198),(0.74045,0.00255,0.01339,0.00255),(0.72026,0.00301,0.01557,0.00301),(0.68974,0.00380,0.01918,0.00380)} {(0.00088,0.00460,0.00088,0.64809),(0.00113,0.00578,0.00113,0.60952),(0.00134,0.00670,0.00134,0.58244),(0.00169,0.00822,0.00169,0.54242)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00176,0.05921,0.00176,0.10921),(0.00226,0.06511,0.00226,0.11866),(0.00268,0.06916,0.00268,0.12492),(0.00338,0.07498,0.00338,0.13352)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.76856,0.00198,0.01063,0.00198),(0.74045,0.00255,0.01339,0.00255),(0.72026,0.00301,0.01557,0.00301),(0.68974,0.00380,0.01918,0.00380)} {(0.76856,0.00198,0.01063,0.00198),(0.74045,0.00255,0.01339,0.00255),(0.72026,0.00301,0.01557,0.00301),(0.68974,0.00380,0.01918,0.00380)} {(0.00118,0.00022,0.65276,0.00022),(0.00149,0.00028,0.61362,0.00028),(0.00173,0.00033,0.58597,0.00033),(0.00213,0.00042,0.54490,0.00042)} ] - TEST alpha(ncats) = 100.00( 4) + TEST alpha(ncats) = 100.00( 4), mode = MEAN + +0.887074 0.966129 1.029796 1.117001 +[8] P-matrix for branch length 0.100000 ++0.9307 +0.0330 +0.0198 +0.0165 ++0.0248 +0.9277 +0.0083 +0.0393 ++0.0594 +0.0330 +0.8911 +0.0165 ++0.0248 +0.0786 +0.0083 +0.8884 + ++0.9249 +0.0358 +0.0214 +0.0179 ++0.0269 +0.9217 +0.0090 +0.0425 ++0.0642 +0.0358 +0.8821 +0.0179 ++0.0269 +0.0850 +0.0090 +0.8792 + ++0.9202 +0.0381 +0.0227 +0.0190 ++0.0285 +0.9170 +0.0095 +0.0450 ++0.0681 +0.0381 +0.8749 +0.0190 ++0.0285 +0.0900 +0.0095 +0.8720 + ++0.9139 +0.0411 +0.0244 +0.0206 ++0.0308 +0.9105 +0.0103 +0.0484 ++0.0732 +0.0411 +0.8651 +0.0206 ++0.0308 +0.0967 +0.0103 +0.8622 + + +[8] P-matrix for branch length 0.200000 ++0.8686 +0.0633 +0.0365 +0.0316 ++0.0475 +0.8648 +0.0158 +0.0719 ++0.1095 +0.0633 +0.7956 +0.0316 ++0.0475 +0.1439 +0.0158 +0.7928 + ++0.8582 +0.0684 +0.0392 +0.0342 ++0.0513 +0.8544 +0.0171 +0.0771 ++0.1175 +0.0684 +0.7799 +0.0342 ++0.0513 +0.1543 +0.0171 +0.7773 + ++0.8500 +0.0725 +0.0413 +0.0362 ++0.0544 +0.8463 +0.0181 +0.0812 ++0.1238 +0.0725 +0.7675 +0.0362 ++0.0544 +0.1624 +0.0181 +0.7651 + ++0.8390 +0.0780 +0.0441 +0.0390 ++0.0585 +0.8354 +0.0195 +0.0866 ++0.1322 +0.0780 +0.7508 +0.0390 ++0.0585 +0.1732 +0.0195 +0.7488 + + +[8] P-matrix for branch length 1.000000 ++0.5532 +0.2309 +0.1004 +0.1155 ++0.1732 +0.5776 +0.0577 +0.1915 ++0.3011 +0.2309 +0.3525 +0.1155 ++0.1732 +0.3829 +0.0577 +0.3861 + ++0.5319 +0.2434 +0.1030 +0.1217 ++0.1826 +0.5605 +0.0609 +0.1961 ++0.3089 +0.2434 +0.3259 +0.1217 ++0.1826 +0.3922 +0.0609 +0.3644 + ++0.5161 +0.2528 +0.1047 +0.1264 ++0.1896 +0.5480 +0.0632 +0.1992 ++0.3141 +0.2528 +0.3067 +0.1264 ++0.1896 +0.3984 +0.0632 +0.3488 + ++0.4962 +0.2648 +0.1066 +0.1324 ++0.1986 +0.5326 +0.0662 +0.2026 ++0.3199 +0.2648 +0.2830 +0.1324 ++0.1986 +0.4052 +0.0662 +0.3300 + + +[8] P-matrix for branch length 1.000000 ++0.5532 +0.2309 +0.1004 +0.1155 ++0.1732 +0.5776 +0.0577 +0.1915 ++0.3011 +0.2309 +0.3525 +0.1155 ++0.1732 +0.3829 +0.0577 +0.3861 + ++0.5319 +0.2434 +0.1030 +0.1217 ++0.1826 +0.5605 +0.0609 +0.1961 ++0.3089 +0.2434 +0.3259 +0.1217 ++0.1826 +0.3922 +0.0609 +0.3644 + ++0.5161 +0.2528 +0.1047 +0.1264 ++0.1896 +0.5480 +0.0632 +0.1992 ++0.3141 +0.2528 +0.3067 +0.1264 ++0.1896 +0.3984 +0.0632 +0.3488 + ++0.4962 +0.2648 +0.1066 +0.1324 ++0.1986 +0.5326 +0.0662 +0.2026 ++0.3199 +0.2648 +0.2830 +0.1324 ++0.1986 +0.4052 +0.0662 +0.3300 + + +[8] CLV 5: [ {(0.05698,0.10326,0.00893,0.12090),(0.06106,0.10976,0.01038,0.12784),(0.06425,0.11473,0.01160,0.13308),(0.06847,0.12120,0.01335,0.13980)} {(0.75443,0.00225,0.01198,0.00225),(0.73651,0.00263,0.01381,0.00263),(0.72249,0.00296,0.01533,0.00296),(0.70384,0.00342,0.01747,0.00342)} {(0.05497,0.04105,0.00693,0.00683),(0.05872,0.04385,0.00804,0.00792),(0.06162,0.04601,0.00897,0.00883),(0.06543,0.04887,0.01031,0.01013)} {(0.00401,0.74782,0.00401,0.02070),(0.00468,0.73007,0.00468,0.02380),(0.00526,0.71624,0.00526,0.02637),(0.00608,0.69793,0.00608,0.02999)} {(0.02749,0.00341,0.00346,0.03763),(0.02936,0.00396,0.00402,0.03989),(0.03081,0.00441,0.00449,0.04160),(0.03272,0.00506,0.00515,0.04380)} {(0.00200,0.06221,0.00200,0.11407),(0.00234,0.06591,0.00234,0.11992),(0.00263,0.06872,0.00263,0.12425),(0.00304,0.07233,0.00304,0.12967)} {(0.00133,0.00025,0.63299,0.00025),(0.00153,0.00029,0.60820,0.00029),(0.00170,0.00033,0.58900,0.00033),(0.00194,0.00038,0.56376,0.00038)} {(0.00401,0.74782,0.00401,0.02070),(0.00468,0.73007,0.00468,0.02380),(0.00526,0.71624,0.00526,0.02637),(0.00608,0.69793,0.00608,0.02999)} {(0.00100,0.00518,0.00100,0.62858),(0.00117,0.00595,0.00117,0.60420),(0.00131,0.00659,0.00131,0.58539),(0.00152,0.00750,0.00152,0.56076)} {(0.75443,0.00225,0.01198,0.00225),(0.73651,0.00263,0.01381,0.00263),(0.72249,0.00296,0.01533,0.00296),(0.70384,0.00342,0.01747,0.00342)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.75443,0.00225,0.01198,0.00225),(0.73651,0.00263,0.01381,0.00263),(0.72249,0.00296,0.01533,0.00296),(0.70384,0.00342,0.01747,0.00342)} {(0.00100,0.00518,0.00100,0.62858),(0.00117,0.00595,0.00117,0.60420),(0.00131,0.00659,0.00131,0.58539),(0.00152,0.00750,0.00152,0.56076)} {(0.00100,0.00518,0.00100,0.62858),(0.00117,0.00595,0.00117,0.60420),(0.00131,0.00659,0.00131,0.58539),(0.00152,0.00750,0.00152,0.56076)} {(0.00231,0.01368,0.05036,0.00228),(0.00268,0.01462,0.05336,0.00264),(0.00299,0.01534,0.05564,0.00294),(0.00344,0.01629,0.05856,0.00338)} {(0.00100,0.00518,0.00100,0.62858),(0.00117,0.00595,0.00117,0.60420),(0.00131,0.00659,0.00131,0.58539),(0.00152,0.00750,0.00152,0.56076)} {(0.05497,0.04105,0.00693,0.00683),(0.05872,0.04385,0.00804,0.00792),(0.06162,0.04601,0.00897,0.00883),(0.06543,0.04887,0.01031,0.01013)} {(0.02749,0.00341,0.00346,0.03763),(0.02936,0.00396,0.00402,0.03989),(0.03081,0.00441,0.00449,0.04160),(0.03272,0.00506,0.00515,0.04380)} {(0.00100,0.00518,0.00100,0.62858),(0.00117,0.00595,0.00117,0.60420),(0.00131,0.00659,0.00131,0.58539),(0.00152,0.00750,0.00152,0.56076)} ] +[8] CLV 6: [ {(0.05091,0.00484,0.00183,0.00555),(0.05399,0.00556,0.00227,0.00634),(0.05634,0.00615,0.00265,0.00698),(0.05937,0.00698,0.00323,0.00787)} {(0.02563,0.00033,0.04424,0.00033),(0.02670,0.00038,0.04650,0.00038),(0.02746,0.00043,0.04816,0.00043),(0.02837,0.00049,0.05020,0.00049)} {(0.05277,0.03977,0.01091,0.01071),(0.05619,0.04240,0.01257,0.01233),(0.05883,0.04443,0.01396,0.01368),(0.06227,0.04711,0.01593,0.01558)} {(0.00182,0.60074,0.00182,0.01113),(0.00212,0.57597,0.00212,0.01282),(0.00237,0.55699,0.00237,0.01423),(0.00273,0.53232,0.00273,0.01621)} {(0.02638,0.00536,0.00545,0.03441),(0.02810,0.00617,0.00629,0.03623),(0.02941,0.00684,0.00698,0.03759),(0.03113,0.00779,0.00796,0.03932)} {(0.00018,0.00448,0.00018,0.08427),(0.00023,0.00509,0.00023,0.08637),(0.00027,0.00558,0.00027,0.08770),(0.00033,0.00626,0.00033,0.08905)} {(0.00050,0.00009,0.44883,0.00009),(0.00057,0.00010,0.41846,0.00010),(0.00062,0.00011,0.39557,0.00011),(0.00069,0.00012,0.36632,0.00012)} {(0.00182,0.60074,0.00182,0.01113),(0.00212,0.57597,0.00212,0.01282),(0.00237,0.55699,0.00237,0.01423),(0.00273,0.53232,0.00273,0.01621)} {(0.00999,0.00140,0.00126,0.02653),(0.01042,0.00160,0.00143,0.02729),(0.01073,0.00176,0.00156,0.02779),(0.01113,0.00199,0.00175,0.02833)} {(0.02563,0.00033,0.04424,0.00033),(0.02670,0.00038,0.04650,0.00038),(0.02746,0.00043,0.04816,0.00043),(0.02837,0.00049,0.05020,0.00049)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.04446,0.01812,0.00352,0.00301),(0.04664,0.01918,0.00408,0.00346),(0.04824,0.01998,0.00455,0.00383),(0.05022,0.02102,0.00521,0.00436)} {(0.00036,0.00213,0.00036,0.44307),(0.00042,0.00241,0.00042,0.41336),(0.00046,0.00263,0.00046,0.39104),(0.00052,0.00294,0.00052,0.36263)} {(0.00036,0.00213,0.00036,0.44307),(0.00042,0.00241,0.00042,0.41336),(0.00046,0.00263,0.00046,0.39104),(0.00052,0.00294,0.00052,0.36263)} {(0.00023,0.01146,0.00288,0.00051),(0.00029,0.01208,0.00327,0.00063),(0.00034,0.01254,0.00359,0.00074),(0.00041,0.01312,0.00403,0.00090)} {(0.00036,0.00213,0.00036,0.44307),(0.00042,0.00241,0.00042,0.41336),(0.00046,0.00263,0.00046,0.39104),(0.00052,0.00294,0.00052,0.36263)} {(0.04583,0.00189,0.00119,0.00051),(0.04822,0.00218,0.00148,0.00063),(0.05000,0.00242,0.00173,0.00074),(0.05224,0.00276,0.00210,0.00091)} {(0.00167,0.00463,0.00035,0.00495),(0.00192,0.00527,0.00043,0.00559),(0.00213,0.00579,0.00051,0.00610),(0.00243,0.00651,0.00062,0.00681)} {(0.00036,0.00213,0.00036,0.44307),(0.00042,0.00241,0.00042,0.41336),(0.00046,0.00263,0.00046,0.39104),(0.00052,0.00294,0.00052,0.36263)} ] +[8] CLV 7: [ {(0.00401,0.74782,0.00401,0.02070),(0.00468,0.73007,0.00468,0.02380),(0.00526,0.71624,0.00526,0.02637),(0.00608,0.69793,0.00608,0.02999)} {(0.00133,0.00025,0.63299,0.00025),(0.00153,0.00029,0.60820,0.00029),(0.00170,0.00033,0.58900,0.00033),(0.00194,0.00038,0.56376,0.00038)} {(0.02749,0.00341,0.00346,0.03763),(0.02936,0.00396,0.00402,0.03989),(0.03081,0.00441,0.00449,0.04160),(0.03272,0.00506,0.00515,0.04380)} {(0.00401,0.74782,0.00401,0.02070),(0.00468,0.73007,0.00468,0.02380),(0.00526,0.71624,0.00526,0.02637),(0.00608,0.69793,0.00608,0.02999)} {(0.00100,0.00518,0.00100,0.62858),(0.00117,0.00595,0.00117,0.60420),(0.00131,0.00659,0.00131,0.58539),(0.00152,0.00750,0.00152,0.56076)} {(0.00100,0.00518,0.00100,0.62858),(0.00117,0.00595,0.00117,0.60420),(0.00131,0.00659,0.00131,0.58539),(0.00152,0.00750,0.00152,0.56076)} {(0.00133,0.00025,0.63299,0.00025),(0.00153,0.00029,0.60820,0.00029),(0.00170,0.00033,0.58900,0.00033),(0.00194,0.00038,0.56376,0.00038)} {(0.00401,0.74782,0.00401,0.02070),(0.00468,0.73007,0.00468,0.02380),(0.00526,0.71624,0.00526,0.02637),(0.00608,0.69793,0.00608,0.02999)} {(0.05497,0.04105,0.00693,0.00683),(0.05872,0.04385,0.00804,0.00792),(0.06162,0.04601,0.00897,0.00883),(0.06543,0.04887,0.01031,0.01013)} {(0.75443,0.00225,0.01198,0.00225),(0.73651,0.00263,0.01381,0.00263),(0.72249,0.00296,0.01533,0.00296),(0.70384,0.00342,0.01747,0.00342)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.75443,0.00225,0.01198,0.00225),(0.73651,0.00263,0.01381,0.00263),(0.72249,0.00296,0.01533,0.00296),(0.70384,0.00342,0.01747,0.00342)} {(0.00100,0.00518,0.00100,0.62858),(0.00117,0.00595,0.00117,0.60420),(0.00131,0.00659,0.00131,0.58539),(0.00152,0.00750,0.00152,0.56076)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00200,0.06221,0.00200,0.11407),(0.00234,0.06591,0.00234,0.11992),(0.00263,0.06872,0.00263,0.12425),(0.00304,0.07233,0.00304,0.12967)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.75443,0.00225,0.01198,0.00225),(0.73651,0.00263,0.01381,0.00263),(0.72249,0.00296,0.01533,0.00296),(0.70384,0.00342,0.01747,0.00342)} {(0.75443,0.00225,0.01198,0.00225),(0.73651,0.00263,0.01381,0.00263),(0.72249,0.00296,0.01533,0.00296),(0.70384,0.00342,0.01747,0.00342)} {(0.00133,0.00025,0.63299,0.00025),(0.00153,0.00029,0.60820,0.00029),(0.00170,0.00033,0.58900,0.00033),(0.00194,0.00038,0.56376,0.00038)} ] + + + TEST alpha(ncats) = 100.00( 4), mode = MEDIAN 0.875906 0.964739 1.029549 1.129806 [8] P-matrix for branch length 0.100000 @@ -1692,9 +3384,9 @@ [8] CLV 7: [ {(0.00391,0.75039,0.00391,0.02027),(0.00467,0.73038,0.00467,0.02375),(0.00525,0.71629,0.00525,0.02636),(0.00621,0.69531,0.00621,0.03052)} {(0.00130,0.00024,0.63658,0.00024),(0.00153,0.00029,0.60862,0.00029),(0.00170,0.00033,0.58907,0.00033),(0.00198,0.00039,0.56016,0.00039)} {(0.02722,0.00334,0.00339,0.03730),(0.02933,0.00395,0.00401,0.03985),(0.03080,0.00441,0.00449,0.04159),(0.03299,0.00516,0.00525,0.04411)} {(0.00391,0.75039,0.00391,0.02027),(0.00467,0.73038,0.00467,0.02375),(0.00525,0.71629,0.00525,0.02636),(0.00621,0.69531,0.00621,0.03052)} {(0.00098,0.00507,0.00098,0.63212),(0.00117,0.00594,0.00117,0.60462),(0.00131,0.00659,0.00131,0.58547),(0.00155,0.00763,0.00155,0.55725)} {(0.00098,0.00507,0.00098,0.63212),(0.00117,0.00594,0.00117,0.60462),(0.00131,0.00659,0.00131,0.58547),(0.00155,0.00763,0.00155,0.55725)} {(0.00130,0.00024,0.63658,0.00024),(0.00153,0.00029,0.60862,0.00029),(0.00170,0.00033,0.58907,0.00033),(0.00198,0.00039,0.56016,0.00039)} {(0.00391,0.75039,0.00391,0.02027),(0.00467,0.73038,0.00467,0.02375),(0.00525,0.71629,0.00525,0.02636),(0.00621,0.69531,0.00621,0.03052)} {(0.05443,0.04064,0.00678,0.00668),(0.05865,0.04380,0.00802,0.00790),(0.06161,0.04601,0.00897,0.00883),(0.06598,0.04928,0.01051,0.01032)} {(0.75700,0.00220,0.01173,0.00220),(0.73682,0.00263,0.01377,0.00263),(0.72254,0.00295,0.01532,0.00295),(0.70116,0.00349,0.01779,0.00349)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.75700,0.00220,0.01173,0.00220),(0.73682,0.00263,0.01377,0.00263),(0.72254,0.00295,0.01532,0.00295),(0.70116,0.00349,0.01779,0.00349)} {(0.00098,0.00507,0.00098,0.63212),(0.00117,0.00594,0.00117,0.60462),(0.00131,0.00659,0.00131,0.58547),(0.00155,0.00763,0.00155,0.55725)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00196,0.06167,0.00196,0.11320),(0.00233,0.06585,0.00233,0.11982),(0.00263,0.06871,0.00263,0.12423),(0.00310,0.07284,0.00310,0.13042)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.75700,0.00220,0.01173,0.00220),(0.73682,0.00263,0.01377,0.00263),(0.72254,0.00295,0.01532,0.00295),(0.70116,0.00349,0.01779,0.00349)} {(0.75700,0.00220,0.01173,0.00220),(0.73682,0.00263,0.01377,0.00263),(0.72254,0.00295,0.01532,0.00295),(0.70116,0.00349,0.01779,0.00349)} {(0.00130,0.00024,0.63658,0.00024),(0.00153,0.00029,0.60862,0.00029),(0.00170,0.00033,0.58907,0.00033),(0.00198,0.00039,0.56016,0.00039)} ] - TEST alpha(ncats) = 0.10( 8) + TEST alpha(ncats) = 0.10( 8), mode = MEAN -0.000000 0.000001 0.000090 0.002066 0.023015 0.164491 0.915773 6.894563 +0.000000 0.000000 0.000076 0.002201 0.027213 0.204750 1.155574 6.610186 [0] P-matrix for branch length 0.100000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 @@ -1716,25 +3408,25 @@ +0.0002 +0.0001 +0.9997 +0.0000 +0.0001 +0.0002 +0.0000 +0.9997 -+0.9981 +0.0009 +0.0006 +0.0004 -+0.0007 +0.9980 +0.0002 +0.0011 -+0.0017 +0.0009 +0.9970 +0.0004 -+0.0007 +0.0022 +0.0002 +0.9969 ++0.9978 +0.0011 +0.0007 +0.0005 ++0.0008 +0.9976 +0.0003 +0.0013 ++0.0020 +0.0011 +0.9964 +0.0005 ++0.0008 +0.0026 +0.0003 +0.9963 -+0.9866 +0.0063 +0.0039 +0.0032 -+0.0048 +0.9858 +0.0016 +0.0079 -+0.0118 +0.0063 +0.9787 +0.0032 -+0.0048 +0.0157 +0.0016 +0.9780 ++0.9833 +0.0079 +0.0049 +0.0039 ++0.0059 +0.9824 +0.0020 +0.0097 ++0.0146 +0.0079 +0.9736 +0.0039 ++0.0059 +0.0195 +0.0020 +0.9727 -+0.9286 +0.0340 +0.0204 +0.0170 -+0.0255 +0.9255 +0.0085 +0.0405 -+0.0612 +0.0340 +0.8878 +0.0170 -+0.0255 +0.0809 +0.0085 +0.8850 ++0.9112 +0.0425 +0.0252 +0.0212 ++0.0318 +0.9077 +0.0106 +0.0498 ++0.0755 +0.0425 +0.8608 +0.0212 ++0.0318 +0.0997 +0.0106 +0.8579 -+0.6161 +0.1952 +0.0911 +0.0976 -+0.1464 +0.6300 +0.0488 +0.1748 -+0.2734 +0.1952 +0.4338 +0.0976 -+0.1464 +0.3497 +0.0488 +0.4552 ++0.6264 +0.1895 +0.0894 +0.0947 ++0.1421 +0.6388 +0.0474 +0.1717 ++0.2683 +0.1895 +0.4476 +0.0947 ++0.1421 +0.3434 +0.0474 +0.4671 [0] P-matrix for branch length 0.200000 @@ -1753,30 +3445,30 @@ +0.0000 +0.0000 +1.0000 +0.0000 +0.0000 +0.0000 +0.0000 +1.0000 -+0.9997 +0.0002 +0.0001 +0.0001 ++0.9996 +0.0002 +0.0001 +0.0001 +0.0001 +0.9996 +0.0000 +0.0002 -+0.0003 +0.0002 +0.9995 +0.0001 ++0.0003 +0.0002 +0.9994 +0.0001 +0.0001 +0.0004 +0.0000 +0.9994 -+0.9962 +0.0018 +0.0011 +0.0009 -+0.0013 +0.9960 +0.0004 +0.0022 -+0.0033 +0.0018 +0.9940 +0.0009 -+0.0013 +0.0044 +0.0004 +0.9938 ++0.9955 +0.0021 +0.0013 +0.0011 ++0.0016 +0.9953 +0.0005 +0.0026 ++0.0039 +0.0021 +0.9929 +0.0011 ++0.0016 +0.0053 +0.0005 +0.9926 -+0.9734 +0.0126 +0.0077 +0.0063 -+0.0094 +0.9720 +0.0031 +0.0154 -+0.0232 +0.0126 +0.9579 +0.0063 -+0.0094 +0.0309 +0.0031 +0.9566 ++0.9671 +0.0156 +0.0096 +0.0078 ++0.0117 +0.9654 +0.0039 +0.0191 ++0.0287 +0.0156 +0.9479 +0.0078 ++0.0117 +0.0381 +0.0039 +0.9463 -+0.8648 +0.0652 +0.0375 +0.0326 -+0.0489 +0.8610 +0.0163 +0.0738 -+0.1124 +0.0652 +0.7898 +0.0326 -+0.0489 +0.1477 +0.0163 +0.7871 ++0.8341 +0.0804 +0.0453 +0.0402 ++0.0603 +0.8307 +0.0201 +0.0889 ++0.1358 +0.0804 +0.7436 +0.0402 ++0.0603 +0.1778 +0.0201 +0.7418 -+0.4473 +0.2951 +0.1100 +0.1476 -+0.2213 +0.4961 +0.0738 +0.2088 -+0.3299 +0.2951 +0.2274 +0.1476 -+0.2213 +0.4175 +0.0738 +0.2873 ++0.4567 +0.2892 +0.1095 +0.1446 ++0.2169 +0.5030 +0.0723 +0.2078 ++0.3285 +0.2892 +0.2378 +0.1446 ++0.2169 +0.4157 +0.0723 +0.2951 [0] P-matrix for branch length 1.000000 @@ -1795,30 +3487,30 @@ +0.0001 +0.0000 +0.9999 +0.0000 +0.0000 +0.0001 +0.0000 +0.9999 -+0.9983 +0.0008 +0.0005 +0.0004 -+0.0006 +0.9982 +0.0002 +0.0010 -+0.0015 +0.0008 +0.9973 +0.0004 -+0.0006 +0.0020 +0.0002 +0.9972 ++0.9982 +0.0009 +0.0005 +0.0004 ++0.0006 +0.9981 +0.0002 +0.0011 ++0.0016 +0.0009 +0.9971 +0.0004 ++0.0006 +0.0021 +0.0002 +0.9970 -+0.9813 +0.0088 +0.0055 +0.0044 -+0.0066 +0.9803 +0.0022 +0.0109 -+0.0164 +0.0088 +0.9703 +0.0044 -+0.0066 +0.0218 +0.0022 +0.9693 ++0.9779 +0.0104 +0.0064 +0.0052 ++0.0078 +0.9767 +0.0026 +0.0128 ++0.0193 +0.0104 +0.9650 +0.0052 ++0.0078 +0.0257 +0.0026 +0.9639 -+0.8772 +0.0590 +0.0342 +0.0295 -+0.0443 +0.8734 +0.0148 +0.0676 -+0.1027 +0.0590 +0.8087 +0.0295 -+0.0443 +0.1351 +0.0148 +0.8058 ++0.8508 +0.0721 +0.0411 +0.0361 ++0.0541 +0.8471 +0.0180 +0.0808 ++0.1232 +0.0721 +0.7686 +0.0361 ++0.0541 +0.1616 +0.0180 +0.7663 -+0.5452 +0.2356 +0.1014 +0.1178 -+0.1767 +0.5712 +0.0589 +0.1933 -+0.3041 +0.2356 +0.3425 +0.1178 -+0.1767 +0.3865 +0.0589 +0.3779 ++0.4881 +0.2697 +0.1073 +0.1349 ++0.2023 +0.5264 +0.0674 +0.2039 ++0.3220 +0.2697 +0.2734 +0.1349 ++0.2023 +0.4077 +0.0674 +0.3225 -+0.3006 +0.3995 +0.1002 +0.1998 -+0.2996 +0.4003 +0.0999 +0.2002 -+0.3005 +0.3995 +0.1002 +0.1998 -+0.2996 +0.4003 +0.0999 +0.2002 ++0.3007 +0.3993 +0.1002 +0.1997 ++0.2995 +0.4004 +0.0998 +0.2002 ++0.3007 +0.3993 +0.1003 +0.1997 ++0.2995 +0.4004 +0.0998 +0.2002 [0] P-matrix for branch length 1.000000 @@ -1837,19 +3529,195 @@ +0.0001 +0.0000 +0.9999 +0.0000 +0.0000 +0.0001 +0.0000 +0.9999 -+0.9983 +0.0008 +0.0005 +0.0004 -+0.0006 +0.9982 +0.0002 +0.0010 -+0.0015 +0.0008 +0.9973 +0.0004 -+0.0006 +0.0020 +0.0002 +0.9972 ++0.9982 +0.0009 +0.0005 +0.0004 ++0.0006 +0.9981 +0.0002 +0.0011 ++0.0016 +0.0009 +0.9971 +0.0004 ++0.0006 +0.0021 +0.0002 +0.9970 -+0.9813 +0.0088 +0.0055 +0.0044 -+0.0066 +0.9803 +0.0022 +0.0109 -+0.0164 +0.0088 +0.9703 +0.0044 -+0.0066 +0.0218 +0.0022 +0.9693 ++0.9779 +0.0104 +0.0064 +0.0052 ++0.0078 +0.9767 +0.0026 +0.0128 ++0.0193 +0.0104 +0.9650 +0.0052 ++0.0078 +0.0257 +0.0026 +0.9639 -+0.8772 +0.0590 +0.0342 +0.0295 -+0.0443 +0.8734 +0.0148 +0.0676 -+0.1027 +0.0590 +0.8087 +0.0295 ++0.8508 +0.0721 +0.0411 +0.0361 ++0.0541 +0.8471 +0.0180 +0.0808 ++0.1232 +0.0721 +0.7686 +0.0361 ++0.0541 +0.1616 +0.0180 +0.7663 + ++0.4881 +0.2697 +0.1073 +0.1349 ++0.2023 +0.5264 +0.0674 +0.2039 ++0.3220 +0.2697 +0.2734 +0.1349 ++0.2023 +0.4077 +0.0674 +0.3225 + ++0.3007 +0.3993 +0.1002 +0.1997 ++0.2995 +0.4004 +0.0998 +0.2002 ++0.3007 +0.3993 +0.1003 +0.1997 ++0.2995 +0.4004 +0.0998 +0.2002 + + +[0] CLV 5: [ {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00001,0.00001,0.00000,0.00001),(0.00017,0.00034,0.00000,0.00043),(0.00210,0.00419,0.00001,0.00522),(0.01520,0.02968,0.00057,0.03651),(0.07029,0.12394,0.01415,0.14261),(0.17389,0.21363,0.13680,0.21284)} {(1.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000),(0.99997,0.00000,0.00000,0.00000),(0.99927,0.00000,0.00000,0.00000),(0.99107,0.00000,0.00002,0.00000),(0.93519,0.00014,0.00082,0.00014),(0.69580,0.00364,0.01844,0.00364),(0.20861,0.04704,0.10790,0.04704)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00001,0.00000,0.00000,0.00000),(0.00017,0.00013,0.00000,0.00000),(0.00210,0.00157,0.00001,0.00001),(0.01508,0.01129,0.00045,0.00045),(0.06706,0.05009,0.01092,0.01072),(0.13208,0.10909,0.09499,0.09016)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99997,0.00000,0.00000),(0.00000,0.99923,0.00000,0.00000),(0.00000,0.99055,0.00000,0.00003),(0.00024,0.93191,0.00024,0.00145),(0.00646,0.69007,0.00646,0.03161),(0.08362,0.25298,0.08362,0.17281)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00009,0.00000,0.00000,0.00013),(0.00105,0.00000,0.00000,0.00157),(0.00754,0.00022,0.00022,0.01107),(0.03353,0.00536,0.00546,0.04473),(0.06604,0.04508,0.04749,0.06401)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00001,0.00000,0.00001),(0.00000,0.00021,0.00000,0.00043),(0.00000,0.00261,0.00000,0.00522),(0.00012,0.01839,0.00012,0.03606),(0.00323,0.07385,0.00323,0.13189),(0.04181,0.10454,0.04181,0.12268)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99996,0.00000),(0.00000,0.00000,0.99885,0.00000),(0.00000,0.00000,0.98584,0.00000),(0.00009,0.00002,0.89857,0.00002),(0.00205,0.00040,0.55298,0.00040),(0.01199,0.00523,0.05653,0.00523)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99997,0.00000,0.00000),(0.00000,0.99923,0.00000,0.00000),(0.00000,0.99055,0.00000,0.00003),(0.00024,0.93191,0.00024,0.00145),(0.00646,0.69007,0.00646,0.03161),(0.08362,0.25298,0.08362,0.17281)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99996),(0.00000,0.00000,0.00000,0.99880),(0.00000,0.00001,0.00000,0.98533),(0.00006,0.00036,0.00006,0.89548),(0.00162,0.00790,0.00162,0.55027),(0.02091,0.04320,0.02091,0.08710)} {(1.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000),(0.99997,0.00000,0.00000,0.00000),(0.99927,0.00000,0.00000,0.00000),(0.99107,0.00000,0.00002,0.00000),(0.93519,0.00014,0.00082,0.00014),(0.69580,0.00364,0.01844,0.00364),(0.20861,0.04704,0.10790,0.04704)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000),(0.99997,0.00000,0.00000,0.00000),(0.99927,0.00000,0.00000,0.00000),(0.99107,0.00000,0.00002,0.00000),(0.93519,0.00014,0.00082,0.00014),(0.69580,0.00364,0.01844,0.00364),(0.20861,0.04704,0.10790,0.04704)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99996),(0.00000,0.00000,0.00000,0.99880),(0.00000,0.00001,0.00000,0.98533),(0.00006,0.00036,0.00006,0.89548),(0.00162,0.00790,0.00162,0.55027),(0.02091,0.04320,0.02091,0.08710)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99996),(0.00000,0.00000,0.00000,0.99880),(0.00000,0.00001,0.00000,0.98533),(0.00006,0.00036,0.00006,0.89548),(0.00162,0.00790,0.00162,0.55027),(0.02091,0.04320,0.02091,0.08710)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00001,0.00000),(0.00000,0.00004,0.00017,0.00000),(0.00000,0.00052,0.00209,0.00000),(0.00015,0.00376,0.01478,0.00015),(0.00364,0.01670,0.05978,0.00357),(0.03166,0.03636,0.06875,0.03005)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99996),(0.00000,0.00000,0.00000,0.99880),(0.00000,0.00001,0.00000,0.98533),(0.00006,0.00036,0.00006,0.89548),(0.00162,0.00790,0.00162,0.55027),(0.02091,0.04320,0.02091,0.08710)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00001,0.00000,0.00000,0.00000),(0.00017,0.00013,0.00000,0.00000),(0.00210,0.00157,0.00001,0.00001),(0.01508,0.01129,0.00045,0.00045),(0.06706,0.05009,0.01092,0.01072),(0.13208,0.10909,0.09499,0.09016)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00009,0.00000,0.00000,0.00013),(0.00105,0.00000,0.00000,0.00157),(0.00754,0.00022,0.00022,0.01107),(0.03353,0.00536,0.00546,0.04473),(0.06604,0.04508,0.04749,0.06401)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99996),(0.00000,0.00000,0.00000,0.99880),(0.00000,0.00001,0.00000,0.98533),(0.00006,0.00036,0.00006,0.89548),(0.00162,0.00790,0.00162,0.55027),(0.02091,0.04320,0.02091,0.08710)} ] +[0] CLV 6: [ {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00001,0.00000,0.00000,0.00000),(0.00017,0.00000,0.00000,0.00000),(0.00209,0.00001,0.00000,0.00001),(0.01482,0.00035,0.00003,0.00042),(0.06064,0.00736,0.00350,0.00827),(0.08303,0.04429,0.05535,0.04424)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00001,0.00000),(0.00011,0.00000,0.00016,0.00000),(0.00130,0.00000,0.00196,0.00000),(0.00879,0.00002,0.01372,0.00002),(0.02873,0.00052,0.05103,0.00052),(0.01683,0.00527,0.02797,0.00527)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00001,0.00000,0.00000,0.00000),(0.00017,0.00013,0.00000,0.00000),(0.00210,0.00157,0.00001,0.00001),(0.01492,0.01118,0.00075,0.00074),(0.06373,0.04825,0.01681,0.01644),(0.12044,0.10844,0.10715,0.10284)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99995,0.00000,0.00000),(0.00000,0.99865,0.00000,0.00000),(0.00000,0.98352,0.00000,0.00001),(0.00012,0.88380,0.00012,0.00075),(0.00290,0.52187,0.00290,0.01710),(0.03590,0.10418,0.03590,0.07626)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00009,0.00000,0.00000,0.00013),(0.00105,0.00001,0.00001,0.00156),(0.00746,0.00037,0.00037,0.01081),(0.03187,0.00822,0.00841,0.04003),(0.06022,0.05142,0.05358,0.05701)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00001),(0.00000,0.00000,0.00000,0.00043),(0.00000,0.00001,0.00000,0.00516),(0.00000,0.00035,0.00000,0.03353),(0.00036,0.00656,0.00036,0.08950),(0.00887,0.01991,0.00887,0.02985)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99993,0.00000),(0.00000,0.00000,0.99798,0.00000),(0.00000,0.00000,0.97535,0.00000),(0.00004,0.00001,0.82927,0.00001),(0.00072,0.00013,0.35412,0.00013),(0.00154,0.00062,0.00713,0.00062)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99995,0.00000,0.00000),(0.00000,0.99865,0.00000,0.00000),(0.00000,0.98352,0.00000,0.00001),(0.00012,0.88380,0.00012,0.00075),(0.00290,0.52187,0.00290,0.01710),(0.03590,0.10418,0.03590,0.07626)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00004,0.00000,0.00000,0.00013),(0.00052,0.00000,0.00000,0.00155),(0.00347,0.00011,0.00010,0.01018),(0.01128,0.00209,0.00184,0.02852),(0.01434,0.01009,0.01031,0.01290)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00001,0.00000),(0.00011,0.00000,0.00016,0.00000),(0.00130,0.00000,0.00196,0.00000),(0.00879,0.00002,0.01372,0.00002),(0.02873,0.00052,0.05103,0.00052),(0.01683,0.00527,0.02797,0.00527)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00001,0.00000,0.00000,0.00000),(0.00017,0.00006,0.00000,0.00000),(0.00208,0.00078,0.00000,0.00000),(0.01434,0.00546,0.00023,0.00022),(0.05103,0.02146,0.00552,0.00459),(0.04444,0.03666,0.03401,0.03030)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99993),(0.00000,0.00000,0.00000,0.99791),(0.00000,0.00000,0.00000,0.97447),(0.00003,0.00017,0.00003,0.82424),(0.00054,0.00308,0.00054,0.35081),(0.00454,0.00967,0.00454,0.01755)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99993),(0.00000,0.00000,0.00000,0.99791),(0.00000,0.00000,0.00000,0.97447),(0.00003,0.00017,0.00003,0.82424),(0.00054,0.00308,0.00054,0.35081),(0.00454,0.00967,0.00454,0.01755)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00004,0.00000,0.00000),(0.00000,0.00052,0.00000,0.00000),(0.00000,0.00360,0.00022,0.00001),(0.00045,0.01336,0.00422,0.00097),(0.01033,0.01818,0.01417,0.01425)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99993),(0.00000,0.00000,0.00000,0.99791),(0.00000,0.00000,0.00000,0.97447),(0.00003,0.00017,0.00003,0.82424),(0.00054,0.00308,0.00054,0.35081),(0.00454,0.00967,0.00454,0.01755)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00001,0.00000,0.00000,0.00000),(0.00017,0.00000,0.00000,0.00000),(0.00209,0.00000,0.00000,0.00000),(0.01443,0.00013,0.00002,0.00001),(0.05316,0.00291,0.00228,0.00099),(0.05501,0.02352,0.03520,0.02231)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00001,0.00000,0.00001),(0.00012,0.00036,0.00001,0.00041),(0.00256,0.00683,0.00068,0.00712),(0.01741,0.02586,0.01549,0.02370)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99993),(0.00000,0.00000,0.00000,0.99791),(0.00000,0.00000,0.00000,0.97447),(0.00003,0.00017,0.00003,0.82424),(0.00054,0.00308,0.00054,0.35081),(0.00454,0.00967,0.00454,0.01755)} ] +[0] CLV 7: [ {(0.00000,1.00000,0.00000,0.00000),(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99997,0.00000,0.00000),(0.00000,0.99923,0.00000,0.00000),(0.00000,0.99055,0.00000,0.00003),(0.00024,0.93191,0.00024,0.00145),(0.00646,0.69007,0.00646,0.03161),(0.08362,0.25298,0.08362,0.17281)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99996,0.00000),(0.00000,0.00000,0.99885,0.00000),(0.00000,0.00000,0.98584,0.00000),(0.00009,0.00002,0.89857,0.00002),(0.00205,0.00040,0.55298,0.00040),(0.01199,0.00523,0.05653,0.00523)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00009,0.00000,0.00000,0.00013),(0.00105,0.00000,0.00000,0.00157),(0.00754,0.00022,0.00022,0.01107),(0.03353,0.00536,0.00546,0.04473),(0.06604,0.04508,0.04749,0.06401)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99997,0.00000,0.00000),(0.00000,0.99923,0.00000,0.00000),(0.00000,0.99055,0.00000,0.00003),(0.00024,0.93191,0.00024,0.00145),(0.00646,0.69007,0.00646,0.03161),(0.08362,0.25298,0.08362,0.17281)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99996),(0.00000,0.00000,0.00000,0.99880),(0.00000,0.00001,0.00000,0.98533),(0.00006,0.00036,0.00006,0.89548),(0.00162,0.00790,0.00162,0.55027),(0.02091,0.04320,0.02091,0.08710)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99996),(0.00000,0.00000,0.00000,0.99880),(0.00000,0.00001,0.00000,0.98533),(0.00006,0.00036,0.00006,0.89548),(0.00162,0.00790,0.00162,0.55027),(0.02091,0.04320,0.02091,0.08710)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99996,0.00000),(0.00000,0.00000,0.99885,0.00000),(0.00000,0.00000,0.98584,0.00000),(0.00009,0.00002,0.89857,0.00002),(0.00205,0.00040,0.55298,0.00040),(0.01199,0.00523,0.05653,0.00523)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99997,0.00000,0.00000),(0.00000,0.99923,0.00000,0.00000),(0.00000,0.99055,0.00000,0.00003),(0.00024,0.93191,0.00024,0.00145),(0.00646,0.69007,0.00646,0.03161),(0.08362,0.25298,0.08362,0.17281)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00001,0.00000,0.00000,0.00000),(0.00017,0.00013,0.00000,0.00000),(0.00210,0.00157,0.00001,0.00001),(0.01508,0.01129,0.00045,0.00045),(0.06706,0.05009,0.01092,0.01072),(0.13208,0.10909,0.09499,0.09016)} {(1.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000),(0.99997,0.00000,0.00000,0.00000),(0.99927,0.00000,0.00000,0.00000),(0.99107,0.00000,0.00002,0.00000),(0.93519,0.00014,0.00082,0.00014),(0.69580,0.00364,0.01844,0.00364),(0.20861,0.04704,0.10790,0.04704)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000),(0.99997,0.00000,0.00000,0.00000),(0.99927,0.00000,0.00000,0.00000),(0.99107,0.00000,0.00002,0.00000),(0.93519,0.00014,0.00082,0.00014),(0.69580,0.00364,0.01844,0.00364),(0.20861,0.04704,0.10790,0.04704)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99996),(0.00000,0.00000,0.00000,0.99880),(0.00000,0.00001,0.00000,0.98533),(0.00006,0.00036,0.00006,0.89548),(0.00162,0.00790,0.00162,0.55027),(0.02091,0.04320,0.02091,0.08710)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00001,0.00000,0.00001),(0.00000,0.00021,0.00000,0.00043),(0.00000,0.00261,0.00000,0.00522),(0.00012,0.01839,0.00012,0.03606),(0.00323,0.07385,0.00323,0.13189),(0.04181,0.10454,0.04181,0.12268)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000),(0.99997,0.00000,0.00000,0.00000),(0.99927,0.00000,0.00000,0.00000),(0.99107,0.00000,0.00002,0.00000),(0.93519,0.00014,0.00082,0.00014),(0.69580,0.00364,0.01844,0.00364),(0.20861,0.04704,0.10790,0.04704)} {(1.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000),(0.99997,0.00000,0.00000,0.00000),(0.99927,0.00000,0.00000,0.00000),(0.99107,0.00000,0.00002,0.00000),(0.93519,0.00014,0.00082,0.00014),(0.69580,0.00364,0.01844,0.00364),(0.20861,0.04704,0.10790,0.04704)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99996,0.00000),(0.00000,0.00000,0.99885,0.00000),(0.00000,0.00000,0.98584,0.00000),(0.00009,0.00002,0.89857,0.00002),(0.00205,0.00040,0.55298,0.00040),(0.01199,0.00523,0.05653,0.00523)} ] + + + TEST alpha(ncats) = 0.10( 8), mode = MEDIAN + +0.000000 0.000001 0.000090 0.002066 0.023015 0.164491 0.915773 6.894563 +[0] P-matrix for branch length 0.100000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++0.9998 +0.0001 +0.0001 +0.0000 ++0.0001 +0.9998 +0.0000 +0.0001 ++0.0002 +0.0001 +0.9997 +0.0000 ++0.0001 +0.0002 +0.0000 +0.9997 + ++0.9981 +0.0009 +0.0006 +0.0004 ++0.0007 +0.9980 +0.0002 +0.0011 ++0.0017 +0.0009 +0.9970 +0.0004 ++0.0007 +0.0022 +0.0002 +0.9969 + ++0.9866 +0.0063 +0.0039 +0.0032 ++0.0048 +0.9858 +0.0016 +0.0079 ++0.0118 +0.0063 +0.9787 +0.0032 ++0.0048 +0.0157 +0.0016 +0.9780 + ++0.9286 +0.0340 +0.0204 +0.0170 ++0.0255 +0.9255 +0.0085 +0.0405 ++0.0612 +0.0340 +0.8878 +0.0170 ++0.0255 +0.0809 +0.0085 +0.8850 + ++0.6161 +0.1952 +0.0911 +0.0976 ++0.1464 +0.6300 +0.0488 +0.1748 ++0.2734 +0.1952 +0.4338 +0.0976 ++0.1464 +0.3497 +0.0488 +0.4552 + + +[0] P-matrix for branch length 0.200000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++0.9997 +0.0002 +0.0001 +0.0001 ++0.0001 +0.9996 +0.0000 +0.0002 ++0.0003 +0.0002 +0.9995 +0.0001 ++0.0001 +0.0004 +0.0000 +0.9994 + ++0.9962 +0.0018 +0.0011 +0.0009 ++0.0013 +0.9960 +0.0004 +0.0022 ++0.0033 +0.0018 +0.9940 +0.0009 ++0.0013 +0.0044 +0.0004 +0.9938 + ++0.9734 +0.0126 +0.0077 +0.0063 ++0.0094 +0.9720 +0.0031 +0.0154 ++0.0232 +0.0126 +0.9579 +0.0063 ++0.0094 +0.0309 +0.0031 +0.9566 + ++0.8648 +0.0652 +0.0375 +0.0326 ++0.0489 +0.8610 +0.0163 +0.0738 ++0.1124 +0.0652 +0.7898 +0.0326 ++0.0489 +0.1477 +0.0163 +0.7871 + ++0.4473 +0.2951 +0.1100 +0.1476 ++0.2213 +0.4961 +0.0738 +0.2088 ++0.3299 +0.2951 +0.2274 +0.1476 ++0.2213 +0.4175 +0.0738 +0.2873 + + +[0] P-matrix for branch length 1.000000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++0.9999 +0.0000 +0.0000 +0.0000 ++0.0000 +0.9999 +0.0000 +0.0000 ++0.0001 +0.0000 +0.9999 +0.0000 ++0.0000 +0.0001 +0.0000 +0.9999 + ++0.9983 +0.0008 +0.0005 +0.0004 ++0.0006 +0.9982 +0.0002 +0.0010 ++0.0015 +0.0008 +0.9973 +0.0004 ++0.0006 +0.0020 +0.0002 +0.9972 + ++0.9813 +0.0088 +0.0055 +0.0044 ++0.0066 +0.9803 +0.0022 +0.0109 ++0.0164 +0.0088 +0.9703 +0.0044 ++0.0066 +0.0218 +0.0022 +0.9693 + ++0.8772 +0.0590 +0.0342 +0.0295 ++0.0443 +0.8734 +0.0148 +0.0676 ++0.1027 +0.0590 +0.8087 +0.0295 ++0.0443 +0.1351 +0.0148 +0.8058 + ++0.5452 +0.2356 +0.1014 +0.1178 ++0.1767 +0.5712 +0.0589 +0.1933 ++0.3041 +0.2356 +0.3425 +0.1178 ++0.1767 +0.3865 +0.0589 +0.3779 + ++0.3006 +0.3995 +0.1002 +0.1998 ++0.2996 +0.4003 +0.0999 +0.2002 ++0.3005 +0.3995 +0.1002 +0.1998 ++0.2996 +0.4003 +0.0999 +0.2002 + + +[0] P-matrix for branch length 1.000000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++0.9999 +0.0000 +0.0000 +0.0000 ++0.0000 +0.9999 +0.0000 +0.0000 ++0.0001 +0.0000 +0.9999 +0.0000 ++0.0000 +0.0001 +0.0000 +0.9999 + ++0.9983 +0.0008 +0.0005 +0.0004 ++0.0006 +0.9982 +0.0002 +0.0010 ++0.0015 +0.0008 +0.9973 +0.0004 ++0.0006 +0.0020 +0.0002 +0.9972 + ++0.9813 +0.0088 +0.0055 +0.0044 ++0.0066 +0.9803 +0.0022 +0.0109 ++0.0164 +0.0088 +0.9703 +0.0044 ++0.0066 +0.0218 +0.0022 +0.9693 + ++0.8772 +0.0590 +0.0342 +0.0295 ++0.0443 +0.8734 +0.0148 +0.0676 ++0.1027 +0.0590 +0.8087 +0.0295 +0.0443 +0.1351 +0.0148 +0.8058 +0.5452 +0.2356 +0.1014 +0.1178 @@ -1868,7 +3736,183 @@ [0] CLV 7: [ {(0.00000,1.00000,0.00000,0.00000),(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99997,0.00000,0.00000),(0.00000,0.99928,0.00000,0.00000),(0.00000,0.99200,0.00000,0.00002),(0.00016,0.94476,0.00016,0.00095),(0.00425,0.74130,0.00425,0.02181),(0.08710,0.24612,0.08710,0.17433)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99995,0.00000),(0.00000,0.00000,0.99892,0.00000),(0.00000,0.00000,0.98801,0.00000),(0.00006,0.00001,0.91761,0.00001),(0.00140,0.00027,0.62386,0.00027),(0.01209,0.00544,0.05171,0.00544)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00001),(0.00008,0.00000,0.00000,0.00012),(0.00089,0.00000,0.00000,0.00133),(0.00612,0.00015,0.00015,0.00902),(0.02818,0.00361,0.00366,0.03847),(0.06601,0.04621,0.04868,0.06360)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99997,0.00000,0.00000),(0.00000,0.99928,0.00000,0.00000),(0.00000,0.99200,0.00000,0.00002),(0.00016,0.94476,0.00016,0.00095),(0.00425,0.74130,0.00425,0.02181),(0.08710,0.24612,0.08710,0.17433)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99995),(0.00000,0.00000,0.00000,0.99888),(0.00000,0.00000,0.00000,0.98758),(0.00004,0.00024,0.00004,0.91500),(0.00106,0.00545,0.00106,0.61959),(0.02178,0.04358,0.02178,0.08257)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99995),(0.00000,0.00000,0.00000,0.99888),(0.00000,0.00000,0.00000,0.98758),(0.00004,0.00024,0.00004,0.91500),(0.00106,0.00545,0.00106,0.61959),(0.02178,0.04358,0.02178,0.08257)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99995,0.00000),(0.00000,0.00000,0.99892,0.00000),(0.00000,0.00000,0.98801,0.00000),(0.00006,0.00001,0.91761,0.00001),(0.00140,0.00027,0.62386,0.00027),(0.01209,0.00544,0.05171,0.00544)} {(0.00000,1.00000,0.00000,0.00000),(0.00000,1.00000,0.00000,0.00000),(0.00000,0.99997,0.00000,0.00000),(0.00000,0.99928,0.00000,0.00000),(0.00000,0.99200,0.00000,0.00002),(0.00016,0.94476,0.00016,0.00095),(0.00425,0.74130,0.00425,0.02181),(0.08710,0.24612,0.08710,0.17433)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00001,0.00001,0.00000,0.00000),(0.00016,0.00012,0.00000,0.00000),(0.00178,0.00133,0.00001,0.00001),(0.01224,0.00917,0.00029,0.00029),(0.05635,0.04208,0.00732,0.00722),(0.13202,0.10981,0.09737,0.09242)} {(1.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000),(0.99997,0.00000,0.00000,0.00000),(0.99932,0.00000,0.00000,0.00000),(0.99244,0.00000,0.00001,0.00000),(0.94751,0.00009,0.00054,0.00009),(0.74786,0.00239,0.01264,0.00239),(0.20011,0.04899,0.10884,0.04899)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000),(0.99997,0.00000,0.00000,0.00000),(0.99932,0.00000,0.00000,0.00000),(0.99244,0.00000,0.00001,0.00000),(0.94751,0.00009,0.00054,0.00009),(0.74786,0.00239,0.01264,0.00239),(0.20011,0.04899,0.10884,0.04899)} {(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,1.00000),(0.00000,0.00000,0.00000,0.99995),(0.00000,0.00000,0.00000,0.99888),(0.00000,0.00000,0.00000,0.98758),(0.00004,0.00024,0.00004,0.91500),(0.00106,0.00545,0.00106,0.61959),(0.02178,0.04358,0.02178,0.08257)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00001,0.00000,0.00002),(0.00000,0.00020,0.00000,0.00040),(0.00000,0.00221,0.00000,0.00442),(0.00008,0.01500,0.00008,0.02953),(0.00212,0.06358,0.00212,0.11626),(0.04355,0.10357,0.04355,0.11997)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000),(0.99997,0.00000,0.00000,0.00000),(0.99932,0.00000,0.00000,0.00000),(0.99244,0.00000,0.00001,0.00000),(0.94751,0.00009,0.00054,0.00009),(0.74786,0.00239,0.01264,0.00239),(0.20011,0.04899,0.10884,0.04899)} {(1.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000),(0.99997,0.00000,0.00000,0.00000),(0.99932,0.00000,0.00000,0.00000),(0.99244,0.00000,0.00001,0.00000),(0.94751,0.00009,0.00054,0.00009),(0.74786,0.00239,0.01264,0.00239),(0.20011,0.04899,0.10884,0.04899)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99995,0.00000),(0.00000,0.00000,0.99892,0.00000),(0.00000,0.00000,0.98801,0.00000),(0.00006,0.00001,0.91761,0.00001),(0.00140,0.00027,0.62386,0.00027),(0.01209,0.00544,0.05171,0.00544)} ] - TEST alpha(ncats) = 0.50( 8) + TEST alpha(ncats) = 0.50( 8), mode = MEAN + +0.006657 0.060914 0.175174 0.363106 0.652640 1.104364 1.880685 3.756460 +[1] P-matrix for branch length 0.100000 ++0.9995 +0.0003 +0.0002 +0.0001 ++0.0002 +0.9994 +0.0001 +0.0003 ++0.0005 +0.0003 +0.9991 +0.0001 ++0.0002 +0.0006 +0.0001 +0.9991 + ++0.9950 +0.0024 +0.0015 +0.0012 ++0.0018 +0.9947 +0.0006 +0.0029 ++0.0044 +0.0024 +0.9921 +0.0012 ++0.0018 +0.0059 +0.0006 +0.9918 + ++0.9857 +0.0067 +0.0042 +0.0034 ++0.0051 +0.9849 +0.0017 +0.0084 ++0.0125 +0.0067 +0.9773 +0.0034 ++0.0051 +0.0167 +0.0017 +0.9766 + ++0.9707 +0.0139 +0.0085 +0.0069 ++0.0104 +0.9692 +0.0035 +0.0170 ++0.0255 +0.0139 +0.9537 +0.0069 ++0.0104 +0.0340 +0.0035 +0.9522 + ++0.9483 +0.0246 +0.0149 +0.0123 ++0.0184 +0.9458 +0.0061 +0.0296 ++0.0447 +0.0246 +0.9185 +0.0123 ++0.0184 +0.0592 +0.0061 +0.9162 + ++0.9148 +0.0407 +0.0242 +0.0203 ++0.0305 +0.9115 +0.0102 +0.0479 ++0.0725 +0.0407 +0.8665 +0.0203 ++0.0305 +0.0958 +0.0102 +0.8636 + ++0.8616 +0.0668 +0.0383 +0.0334 ++0.0501 +0.8578 +0.0167 +0.0755 ++0.1149 +0.0668 +0.7850 +0.0334 ++0.0501 +0.1509 +0.0167 +0.7823 + ++0.7520 +0.1222 +0.0647 +0.0611 ++0.0917 +0.7519 +0.0306 +0.1259 ++0.1940 +0.1222 +0.6226 +0.0611 ++0.0917 +0.2518 +0.0306 +0.6260 + + +[1] P-matrix for branch length 0.200000 ++0.9989 +0.0005 +0.0003 +0.0003 ++0.0004 +0.9988 +0.0001 +0.0006 ++0.0010 +0.0005 +0.9983 +0.0003 ++0.0004 +0.0013 +0.0001 +0.9982 + ++0.9900 +0.0047 +0.0029 +0.0024 ++0.0035 +0.9895 +0.0012 +0.0058 ++0.0088 +0.0047 +0.9842 +0.0024 ++0.0035 +0.0117 +0.0012 +0.9836 + ++0.9717 +0.0134 +0.0082 +0.0067 ++0.0100 +0.9702 +0.0033 +0.0164 ++0.0247 +0.0134 +0.9553 +0.0067 ++0.0100 +0.0328 +0.0033 +0.9538 + ++0.9427 +0.0272 +0.0165 +0.0136 ++0.0204 +0.9401 +0.0068 +0.0327 ++0.0494 +0.0272 +0.9098 +0.0136 ++0.0204 +0.0654 +0.0068 +0.9073 + ++0.9006 +0.0476 +0.0280 +0.0238 ++0.0357 +0.8969 +0.0119 +0.0555 ++0.0841 +0.0476 +0.8445 +0.0238 ++0.0357 +0.1109 +0.0119 +0.8415 + ++0.8405 +0.0772 +0.0437 +0.0386 ++0.0579 +0.8370 +0.0193 +0.0858 ++0.1310 +0.0772 +0.7532 +0.0386 ++0.0579 +0.1716 +0.0193 +0.7512 + ++0.7517 +0.1224 +0.0647 +0.0612 ++0.0918 +0.7516 +0.0306 +0.1260 ++0.1942 +0.1224 +0.6222 +0.0612 ++0.0918 +0.2520 +0.0306 +0.6256 + ++0.5948 +0.2071 +0.0945 +0.1036 ++0.1553 +0.6120 +0.0518 +0.1809 ++0.2835 +0.2071 +0.4058 +0.1036 ++0.1553 +0.3618 +0.0518 +0.4310 + + +[1] P-matrix for branch length 1.000000 ++0.9945 +0.0026 +0.0016 +0.0013 ++0.0019 +0.9942 +0.0006 +0.0032 ++0.0048 +0.0026 +0.9913 +0.0013 ++0.0019 +0.0064 +0.0006 +0.9910 + ++0.9516 +0.0230 +0.0140 +0.0115 ++0.0172 +0.9493 +0.0057 +0.0278 ++0.0419 +0.0230 +0.9237 +0.0115 ++0.0172 +0.0555 +0.0057 +0.9215 + ++0.8701 +0.0626 +0.0361 +0.0313 ++0.0469 +0.8663 +0.0156 +0.0712 ++0.1083 +0.0626 +0.7979 +0.0313 ++0.0469 +0.1424 +0.0156 +0.7951 + ++0.7585 +0.1188 +0.0632 +0.0594 ++0.0891 +0.7580 +0.0297 +0.1231 ++0.1896 +0.1188 +0.6321 +0.0594 ++0.0891 +0.2462 +0.0297 +0.6349 + ++0.6295 +0.1877 +0.0889 +0.0939 ++0.1408 +0.6415 +0.0469 +0.1707 ++0.2667 +0.1877 +0.4517 +0.0939 ++0.1408 +0.3415 +0.0469 +0.4708 + ++0.4990 +0.2631 +0.1064 +0.1315 ++0.1973 +0.5347 +0.0658 +0.2022 ++0.3191 +0.2631 +0.2862 +0.1315 ++0.1973 +0.4043 +0.0658 +0.3326 + ++0.3859 +0.3356 +0.1107 +0.1678 ++0.2517 +0.4533 +0.0839 +0.2111 ++0.3321 +0.3356 +0.1646 +0.1678 ++0.2517 +0.4222 +0.0839 +0.2422 + ++0.3125 +0.3896 +0.1032 +0.1948 ++0.2922 +0.4073 +0.0974 +0.2031 ++0.3095 +0.3896 +0.1061 +0.1948 ++0.2922 +0.4063 +0.0974 +0.2041 + + +[1] P-matrix for branch length 1.000000 ++0.9945 +0.0026 +0.0016 +0.0013 ++0.0019 +0.9942 +0.0006 +0.0032 ++0.0048 +0.0026 +0.9913 +0.0013 ++0.0019 +0.0064 +0.0006 +0.9910 + ++0.9516 +0.0230 +0.0140 +0.0115 ++0.0172 +0.9493 +0.0057 +0.0278 ++0.0419 +0.0230 +0.9237 +0.0115 ++0.0172 +0.0555 +0.0057 +0.9215 + ++0.8701 +0.0626 +0.0361 +0.0313 ++0.0469 +0.8663 +0.0156 +0.0712 ++0.1083 +0.0626 +0.7979 +0.0313 ++0.0469 +0.1424 +0.0156 +0.7951 + ++0.7585 +0.1188 +0.0632 +0.0594 ++0.0891 +0.7580 +0.0297 +0.1231 ++0.1896 +0.1188 +0.6321 +0.0594 ++0.0891 +0.2462 +0.0297 +0.6349 + ++0.6295 +0.1877 +0.0889 +0.0939 ++0.1408 +0.6415 +0.0469 +0.1707 ++0.2667 +0.1877 +0.4517 +0.0939 ++0.1408 +0.3415 +0.0469 +0.4708 + ++0.4990 +0.2631 +0.1064 +0.1315 ++0.1973 +0.5347 +0.0658 +0.2022 ++0.3191 +0.2631 +0.2862 +0.1315 ++0.1973 +0.4043 +0.0658 +0.3326 + ++0.3859 +0.3356 +0.1107 +0.1678 ++0.2517 +0.4533 +0.0839 +0.2111 ++0.3321 +0.3356 +0.1646 +0.1678 ++0.2517 +0.4222 +0.0839 +0.2422 + ++0.3125 +0.3896 +0.1032 +0.1948 ++0.2922 +0.4073 +0.0974 +0.2031 ++0.3095 +0.3896 +0.1061 +0.1948 ++0.2922 +0.4063 +0.0974 +0.2041 + + +[1] CLV 5: [ {(0.00052,0.00103,0.00000,0.00129),(0.00467,0.00927,0.00005,0.01153),(0.01309,0.02565,0.00042,0.03162),(0.02604,0.04995,0.00172,0.06070),(0.04401,0.08177,0.00514,0.09729),(0.06787,0.12029,0.01309,0.13886),(0.09948,0.16368,0.03125,0.18078),(0.14465,0.20578,0.08017,0.21218)} {(0.99781,0.00000,0.00000,0.00000),(0.98014,0.00001,0.00008,0.00001),(0.94422,0.00010,0.00061,0.00010),(0.88867,0.00042,0.00244,0.00042),(0.81100,0.00128,0.00707,0.00128),(0.70650,0.00335,0.01715,0.00335),(0.56506,0.00842,0.03772,0.00842),(0.35380,0.02413,0.08039,0.02413)} {(0.00052,0.00039,0.00000,0.00000),(0.00466,0.00349,0.00004,0.00004),(0.01300,0.00973,0.00033,0.00033),(0.02567,0.01920,0.00134,0.00134),(0.04288,0.03203,0.00400,0.00396),(0.06489,0.04846,0.01011,0.00994),(0.09199,0.06898,0.02377,0.02313),(0.12320,0.09506,0.05872,0.05621)} {(0.00000,0.99768,0.00000,0.00000),(0.00002,0.97903,0.00002,0.00014),(0.00018,0.94133,0.00018,0.00108),(0.00074,0.88370,0.00074,0.00428),(0.00227,0.80449,0.00227,0.01230),(0.00596,0.70054,0.00596,0.02946),(0.01497,0.56496,0.01497,0.06350),(0.04290,0.37449,0.04290,0.13093)} {(0.00026,0.00000,0.00000,0.00039),(0.00233,0.00002,0.00002,0.00347),(0.00650,0.00016,0.00017,0.00957),(0.01284,0.00067,0.00067,0.01853),(0.02144,0.00198,0.00200,0.03005),(0.03245,0.00497,0.00506,0.04349),(0.04599,0.01156,0.01188,0.05742),(0.06160,0.02811,0.02936,0.06696)} {(0.00000,0.00064,0.00000,0.00129),(0.00001,0.00578,0.00001,0.01149),(0.00009,0.01591,0.00009,0.03129),(0.00037,0.03075,0.00037,0.05937),(0.00113,0.04974,0.00113,0.09333),(0.00298,0.07183,0.00298,0.12892),(0.00749,0.09470,0.00749,0.15765),(0.02145,0.11072,0.02145,0.15597)} {(0.00000,0.00000,0.99652,0.00000),(0.00001,0.00000,0.96860,0.00000),(0.00007,0.00001,0.91252,0.00001),(0.00027,0.00005,0.82770,0.00005),(0.00079,0.00014,0.71318,0.00014),(0.00191,0.00037,0.56734,0.00037),(0.00419,0.00094,0.38718,0.00094),(0.00893,0.00268,0.16467,0.00268)} {(0.00000,0.99768,0.00000,0.00000),(0.00002,0.97903,0.00002,0.00014),(0.00018,0.94133,0.00018,0.00108),(0.00074,0.88370,0.00074,0.00428),(0.00227,0.80449,0.00227,0.01230),(0.00596,0.70054,0.00596,0.02946),(0.01497,0.56496,0.01497,0.06350),(0.04290,0.37449,0.04290,0.13093)} {(0.00000,0.00000,0.00000,0.99639),(0.00001,0.00003,0.00001,0.96750),(0.00004,0.00027,0.00004,0.90977),(0.00019,0.00107,0.00019,0.82326),(0.00057,0.00308,0.00057,0.70808),(0.00149,0.00736,0.00149,0.56425),(0.00374,0.01587,0.00374,0.39143),(0.01072,0.03273,0.01072,0.18579)} {(0.99781,0.00000,0.00000,0.00000),(0.98014,0.00001,0.00008,0.00001),(0.94422,0.00010,0.00061,0.00010),(0.88867,0.00042,0.00244,0.00042),(0.81100,0.00128,0.00707,0.00128),(0.70650,0.00335,0.01715,0.00335),(0.56506,0.00842,0.03772,0.00842),(0.35380,0.02413,0.08039,0.02413)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99781,0.00000,0.00000,0.00000),(0.98014,0.00001,0.00008,0.00001),(0.94422,0.00010,0.00061,0.00010),(0.88867,0.00042,0.00244,0.00042),(0.81100,0.00128,0.00707,0.00128),(0.70650,0.00335,0.01715,0.00335),(0.56506,0.00842,0.03772,0.00842),(0.35380,0.02413,0.08039,0.02413)} 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{(0.99781,0.00000,0.00000,0.00000),(0.98014,0.00001,0.00008,0.00001),(0.94422,0.00010,0.00061,0.00010),(0.88867,0.00042,0.00244,0.00042),(0.81100,0.00128,0.00707,0.00128),(0.70650,0.00335,0.01715,0.00335),(0.56506,0.00842,0.03772,0.00842),(0.35380,0.02413,0.08039,0.02413)} {(0.00000,0.00000,0.00000,0.99639),(0.00001,0.00003,0.00001,0.96750),(0.00004,0.00027,0.00004,0.90977),(0.00019,0.00107,0.00019,0.82326),(0.00057,0.00308,0.00057,0.70808),(0.00149,0.00736,0.00149,0.56425),(0.00374,0.01587,0.00374,0.39143),(0.01072,0.03273,0.01072,0.18579)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00064,0.00000,0.00129),(0.00001,0.00578,0.00001,0.01149),(0.00009,0.01591,0.00009,0.03129),(0.00037,0.03075,0.00037,0.05937),(0.00113,0.04974,0.00113,0.09333),(0.00298,0.07183,0.00298,0.12892),(0.00749,0.09470,0.00749,0.15765),(0.02145,0.11072,0.02145,0.15597)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99781,0.00000,0.00000,0.00000),(0.98014,0.00001,0.00008,0.00001),(0.94422,0.00010,0.00061,0.00010),(0.88867,0.00042,0.00244,0.00042),(0.81100,0.00128,0.00707,0.00128),(0.70650,0.00335,0.01715,0.00335),(0.56506,0.00842,0.03772,0.00842),(0.35380,0.02413,0.08039,0.02413)} {(0.99781,0.00000,0.00000,0.00000),(0.98014,0.00001,0.00008,0.00001),(0.94422,0.00010,0.00061,0.00010),(0.88867,0.00042,0.00244,0.00042),(0.81100,0.00128,0.00707,0.00128),(0.70650,0.00335,0.01715,0.00335),(0.56506,0.00842,0.03772,0.00842),(0.35380,0.02413,0.08039,0.02413)} {(0.00000,0.00000,0.99652,0.00000),(0.00001,0.00000,0.96860,0.00000),(0.00007,0.00001,0.91252,0.00001),(0.00027,0.00005,0.82770,0.00005),(0.00079,0.00014,0.71318,0.00014),(0.00191,0.00037,0.56734,0.00037),(0.00419,0.00094,0.38718,0.00094),(0.00893,0.00268,0.16467,0.00268)} ] + + + TEST alpha(ncats) = 0.50( 8), mode = MEDIAN 0.008222 0.058554 0.164605 0.339227 0.608857 1.031680 1.770101 4.018755 [1] P-matrix for branch length 0.100000 @@ -2044,28 +4088,204 @@ [1] CLV 7: [ {(0.00000,0.99713,0.00000,0.00000),(0.00002,0.97983,0.00002,0.00013),(0.00016,0.94473,0.00016,0.00095),(0.00065,0.89074,0.00065,0.00377),(0.00199,0.81578,0.00199,0.01090),(0.00527,0.71583,0.00527,0.02645),(0.01354,0.58154,0.01354,0.05863),(0.04696,0.35746,0.04696,0.13752)} {(0.00000,0.00000,0.99570,0.00000),(0.00001,0.00000,0.96980,0.00000),(0.00006,0.00001,0.91756,0.00001),(0.00024,0.00004,0.83799,0.00004),(0.00069,0.00012,0.72934,0.00012),(0.00171,0.00033,0.58844,0.00033),(0.00386,0.00085,0.40846,0.00085),(0.00941,0.00293,0.14740,0.00293)} {(0.00032,0.00000,0.00000,0.00048),(0.00224,0.00002,0.00002,0.00334),(0.00612,0.00015,0.00015,0.00903),(0.01206,0.00059,0.00059,0.01746),(0.02022,0.00175,0.00176,0.02847),(0.03085,0.00443,0.00450,0.04165),(0.04441,0.01056,0.01084,0.05598),(0.06262,0.03014,0.03153,0.06703)} {(0.00000,0.99713,0.00000,0.00000),(0.00002,0.97983,0.00002,0.00013),(0.00016,0.94473,0.00016,0.00095),(0.00065,0.89074,0.00065,0.00377),(0.00199,0.81578,0.00199,0.01090),(0.00527,0.71583,0.00527,0.02645),(0.01354,0.58154,0.01354,0.05863),(0.04696,0.35746,0.04696,0.13752)} {(0.00000,0.00000,0.00000,0.99554),(0.00001,0.00003,0.00001,0.96874),(0.00004,0.00024,0.00004,0.91494),(0.00016,0.00094,0.00016,0.83371),(0.00050,0.00272,0.00050,0.72422),(0.00132,0.00661,0.00132,0.58485),(0.00338,0.01466,0.00338,0.41155),(0.01174,0.03438,0.01174,0.17012)} {(0.00000,0.00000,0.00000,0.99554),(0.00001,0.00003,0.00001,0.96874),(0.00004,0.00024,0.00004,0.91494),(0.00016,0.00094,0.00016,0.83371),(0.00050,0.00272,0.00050,0.72422),(0.00132,0.00661,0.00132,0.58485),(0.00338,0.01466,0.00338,0.41155),(0.01174,0.03438,0.01174,0.17012)} {(0.00000,0.00000,0.99570,0.00000),(0.00001,0.00000,0.96980,0.00000),(0.00006,0.00001,0.91756,0.00001),(0.00024,0.00004,0.83799,0.00004),(0.00069,0.00012,0.72934,0.00012),(0.00171,0.00033,0.58844,0.00033),(0.00386,0.00085,0.40846,0.00085),(0.00941,0.00293,0.14740,0.00293)} {(0.00000,0.99713,0.00000,0.00000),(0.00002,0.97983,0.00002,0.00013),(0.00016,0.94473,0.00016,0.00095),(0.00065,0.89074,0.00065,0.00377),(0.00199,0.81578,0.00199,0.01090),(0.00527,0.71583,0.00527,0.02645),(0.01354,0.58154,0.01354,0.05863),(0.04696,0.35746,0.04696,0.13752)} {(0.00064,0.00048,0.00000,0.00000),(0.00448,0.00336,0.00004,0.00004),(0.01225,0.00917,0.00029,0.00029),(0.02413,0.01805,0.00118,0.00117),(0.04044,0.03021,0.00353,0.00349),(0.06170,0.04608,0.00900,0.00886),(0.08881,0.06654,0.02168,0.02113),(0.12524,0.09717,0.06306,0.06027)} {(0.99729,0.00000,0.00000,0.00000),(0.98090,0.00001,0.00007,0.00001),(0.94747,0.00009,0.00054,0.00009),(0.89550,0.00037,0.00215,0.00037),(0.82217,0.00112,0.00625,0.00112),(0.72208,0.00297,0.01537,0.00297),(0.58272,0.00761,0.03473,0.00761),(0.33402,0.02641,0.08469,0.02641)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99729,0.00000,0.00000,0.00000),(0.98090,0.00001,0.00007,0.00001),(0.94747,0.00009,0.00054,0.00009),(0.89550,0.00037,0.00215,0.00037),(0.82217,0.00112,0.00625,0.00112),(0.72208,0.00297,0.01537,0.00297),(0.58272,0.00761,0.03473,0.00761),(0.33402,0.02641,0.08469,0.02641)} {(0.00000,0.00000,0.00000,0.99554),(0.00001,0.00003,0.00001,0.96874),(0.00004,0.00024,0.00004,0.91494),(0.00016,0.00094,0.00016,0.83371),(0.00050,0.00272,0.00050,0.72422),(0.00132,0.00661,0.00132,0.58485),(0.00338,0.01466,0.00338,0.41155),(0.01174,0.03438,0.01174,0.17012)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00080,0.00000,0.00159),(0.00001,0.00556,0.00001,0.01106),(0.00008,0.01501,0.00008,0.02955),(0.00033,0.02899,0.00033,0.05609),(0.00099,0.04714,0.00099,0.08884),(0.00264,0.06880,0.00264,0.12437),(0.00677,0.09232,0.00677,0.15533),(0.02348,0.11086,0.02348,0.15296)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99729,0.00000,0.00000,0.00000),(0.98090,0.00001,0.00007,0.00001),(0.94747,0.00009,0.00054,0.00009),(0.89550,0.00037,0.00215,0.00037),(0.82217,0.00112,0.00625,0.00112),(0.72208,0.00297,0.01537,0.00297),(0.58272,0.00761,0.03473,0.00761),(0.33402,0.02641,0.08469,0.02641)} {(0.99729,0.00000,0.00000,0.00000),(0.98090,0.00001,0.00007,0.00001),(0.94747,0.00009,0.00054,0.00009),(0.89550,0.00037,0.00215,0.00037),(0.82217,0.00112,0.00625,0.00112),(0.72208,0.00297,0.01537,0.00297),(0.58272,0.00761,0.03473,0.00761),(0.33402,0.02641,0.08469,0.02641)} {(0.00000,0.00000,0.99570,0.00000),(0.00001,0.00000,0.96980,0.00000),(0.00006,0.00001,0.91756,0.00001),(0.00024,0.00004,0.83799,0.00004),(0.00069,0.00012,0.72934,0.00012),(0.00171,0.00033,0.58844,0.00033),(0.00386,0.00085,0.40846,0.00085),(0.00941,0.00293,0.14740,0.00293)} ] - TEST alpha(ncats) = 0.75( 8) + TEST alpha(ncats) = 0.75( 8), mode = MEAN -0.032582 0.137187 0.286685 0.485709 0.752940 1.131212 1.739477 3.434208 +0.031655 0.143215 0.301067 0.510773 0.791680 1.187403 1.814292 3.219915 [2] P-matrix for branch length 0.100000 -+0.9973 +0.0013 +0.0008 +0.0006 -+0.0009 +0.9972 +0.0003 +0.0016 -+0.0024 +0.0013 +0.9957 +0.0006 -+0.0009 +0.0032 +0.0003 +0.9956 ++0.9974 +0.0012 +0.0008 +0.0006 ++0.0009 +0.9972 +0.0003 +0.0015 ++0.0023 +0.0012 +0.9959 +0.0006 ++0.0009 +0.0031 +0.0003 +0.9957 -+0.9888 +0.0053 +0.0033 +0.0026 -+0.0040 +0.9881 +0.0013 +0.0066 -+0.0099 +0.0053 +0.9822 +0.0026 -+0.0040 +0.0131 +0.0013 +0.9816 ++0.9883 +0.0055 +0.0034 +0.0028 ++0.0041 +0.9876 +0.0014 +0.0068 ++0.0103 +0.0055 +0.9814 +0.0028 ++0.0041 +0.0137 +0.0014 +0.9808 -+0.9768 +0.0110 +0.0068 +0.0055 -+0.0082 +0.9755 +0.0027 +0.0135 -+0.0203 +0.0110 +0.9632 +0.0055 -+0.0082 +0.0270 +0.0027 +0.9620 ++0.9756 +0.0115 +0.0071 +0.0058 ++0.0086 +0.9743 +0.0029 +0.0142 ++0.0213 +0.0115 +0.9614 +0.0058 ++0.0086 +0.0283 +0.0029 +0.9601 -+0.9611 +0.0184 +0.0113 +0.0092 -+0.0138 +0.9592 +0.0046 +0.0224 -+0.0338 +0.0184 +0.9386 +0.0092 ++0.9592 +0.0194 +0.0118 +0.0097 ++0.0145 +0.9571 +0.0048 +0.0235 ++0.0354 +0.0194 +0.9355 +0.0097 ++0.0145 +0.0470 +0.0048 +0.9336 + ++0.9378 +0.0296 +0.0178 +0.0148 ++0.0222 +0.9350 +0.0074 +0.0354 ++0.0535 +0.0296 +0.9021 +0.0148 ++0.0222 +0.0709 +0.0074 +0.8996 + ++0.9089 +0.0436 +0.0258 +0.0218 ++0.0327 +0.9054 +0.0109 +0.0511 ++0.0773 +0.0436 +0.8573 +0.0218 ++0.0327 +0.1021 +0.0109 +0.8543 + ++0.8659 +0.0646 +0.0372 +0.0323 ++0.0485 +0.8621 +0.0162 +0.0733 ++0.1115 +0.0646 +0.7916 +0.0323 ++0.0485 +0.1466 +0.0162 +0.7888 + ++0.7808 +0.1074 +0.0581 +0.0537 ++0.0805 +0.7791 +0.0268 +0.1135 ++0.1744 +0.1074 +0.6645 +0.0537 ++0.0805 +0.2270 +0.0268 +0.6656 + + +[2] P-matrix for branch length 0.200000 ++0.9948 +0.0025 +0.0015 +0.0012 ++0.0018 +0.9945 +0.0006 +0.0031 ++0.0046 +0.0025 +0.9917 +0.0012 ++0.0018 +0.0061 +0.0006 +0.9914 + ++0.9768 +0.0110 +0.0068 +0.0055 ++0.0082 +0.9755 +0.0027 +0.0135 ++0.0203 +0.0110 +0.9632 +0.0055 ++0.0082 +0.0270 +0.0027 +0.9620 + ++0.9521 +0.0227 +0.0138 +0.0114 ++0.0170 +0.9498 +0.0057 +0.0275 ++0.0414 +0.0227 +0.9245 +0.0114 ++0.0170 +0.0549 +0.0057 +0.9223 + ++0.9208 +0.0378 +0.0225 +0.0189 ++0.0283 +0.9176 +0.0094 +0.0447 ++0.0676 +0.0378 +0.8758 +0.0189 ++0.0283 +0.0893 +0.0094 +0.8729 + ++0.8814 +0.0570 +0.0331 +0.0285 ++0.0427 +0.8776 +0.0142 +0.0654 ++0.0994 +0.0570 +0.8151 +0.0285 ++0.0427 +0.1309 +0.0142 +0.8121 + ++0.8302 +0.0824 +0.0462 +0.0412 ++0.0618 +0.8268 +0.0206 +0.0908 ++0.1387 +0.0824 +0.7377 +0.0412 ++0.0618 +0.1816 +0.0206 +0.7361 + ++0.7587 +0.1188 +0.0632 +0.0594 ++0.0891 +0.7582 +0.0297 +0.1231 ++0.1895 +0.1188 +0.6323 +0.0594 ++0.0891 +0.2461 +0.0297 +0.6351 + ++0.6327 +0.1859 +0.0883 +0.0930 ++0.1395 +0.6443 +0.0465 +0.1697 ++0.2650 +0.1859 +0.4561 +0.0930 ++0.1395 +0.3395 +0.0465 +0.4746 + + +[2] P-matrix for branch length 1.000000 ++0.9744 +0.0121 +0.0075 +0.0061 ++0.0091 +0.9730 +0.0030 +0.0149 ++0.0224 +0.0121 +0.9595 +0.0061 ++0.0091 +0.0297 +0.0030 +0.9582 + ++0.8917 +0.0519 +0.0304 +0.0260 ++0.0389 +0.8880 +0.0130 +0.0601 ++0.0912 +0.0519 +0.8309 +0.0260 ++0.0389 +0.1202 +0.0130 +0.8279 + ++0.7926 +0.1014 +0.0554 +0.0507 ++0.0760 +0.7904 +0.0253 +0.1083 ++0.1661 +0.1014 +0.6818 +0.0507 ++0.0760 +0.2165 +0.0253 +0.6821 + ++0.6871 +0.1564 +0.0783 +0.0782 ++0.1173 +0.6923 +0.0391 +0.1513 ++0.2348 +0.1564 +0.5306 +0.0782 ++0.1173 +0.3026 +0.0391 +0.5410 + ++0.5817 +0.2145 +0.0965 +0.1073 ++0.1609 +0.6010 +0.0536 +0.1844 ++0.2894 +0.2145 +0.3888 +0.1073 ++0.1609 +0.3689 +0.0536 +0.4166 + ++0.4816 +0.2737 +0.1078 +0.1369 ++0.2053 +0.5215 +0.0684 +0.2048 ++0.3235 +0.2737 +0.2659 +0.1369 ++0.2053 +0.4096 +0.0684 +0.3167 + ++0.3922 +0.3313 +0.1108 +0.1656 ++0.2485 +0.4575 +0.0828 +0.2112 ++0.3325 +0.3313 +0.1705 +0.1656 ++0.2485 +0.4223 +0.0828 +0.2464 + ++0.3214 +0.3824 +0.1049 +0.1912 ++0.2868 +0.4126 +0.0956 +0.2050 ++0.3147 +0.3824 +0.1116 +0.1912 ++0.2868 +0.4099 +0.0956 +0.2076 + + +[2] P-matrix for branch length 1.000000 ++0.9744 +0.0121 +0.0075 +0.0061 ++0.0091 +0.9730 +0.0030 +0.0149 ++0.0224 +0.0121 +0.9595 +0.0061 ++0.0091 +0.0297 +0.0030 +0.9582 + ++0.8917 +0.0519 +0.0304 +0.0260 ++0.0389 +0.8880 +0.0130 +0.0601 ++0.0912 +0.0519 +0.8309 +0.0260 ++0.0389 +0.1202 +0.0130 +0.8279 + ++0.7926 +0.1014 +0.0554 +0.0507 ++0.0760 +0.7904 +0.0253 +0.1083 ++0.1661 +0.1014 +0.6818 +0.0507 ++0.0760 +0.2165 +0.0253 +0.6821 + ++0.6871 +0.1564 +0.0783 +0.0782 ++0.1173 +0.6923 +0.0391 +0.1513 ++0.2348 +0.1564 +0.5306 +0.0782 ++0.1173 +0.3026 +0.0391 +0.5410 + ++0.5817 +0.2145 +0.0965 +0.1073 ++0.1609 +0.6010 +0.0536 +0.1844 ++0.2894 +0.2145 +0.3888 +0.1073 ++0.1609 +0.3689 +0.0536 +0.4166 + ++0.4816 +0.2737 +0.1078 +0.1369 ++0.2053 +0.5215 +0.0684 +0.2048 ++0.3235 +0.2737 +0.2659 +0.1369 ++0.2053 +0.4096 +0.0684 +0.3167 + ++0.3922 +0.3313 +0.1108 +0.1656 ++0.2485 +0.4575 +0.0828 +0.2112 ++0.3325 +0.3313 +0.1705 +0.1656 ++0.2485 +0.4223 +0.0828 +0.2464 + ++0.3214 +0.3824 +0.1049 +0.1912 ++0.2868 +0.4126 +0.0956 +0.2050 ++0.3147 +0.3824 +0.1116 +0.1912 ++0.2868 +0.4099 +0.0956 +0.2076 + + +[2] CLV 5: [ {(0.00244,0.00486,0.00001,0.00607),(0.01078,0.02119,0.00028,0.02619),(0.02188,0.04227,0.00120,0.05161),(0.03549,0.06697,0.00326,0.08050),(0.05186,0.09493,0.00729,0.11187),(0.07177,0.12614,0.01482,0.14486),(0.09716,0.16084,0.02957,0.17824),(0.13494,0.19922,0.06656,0.20845)} {(0.98962,0.00000,0.00002,0.00000),(0.95410,0.00007,0.00041,0.00007),(0.90654,0.00029,0.00172,0.00029),(0.84792,0.00080,0.00456,0.00080),(0.77681,0.00183,0.00988,0.00183),(0.68925,0.00382,0.01924,0.00382),(0.57557,0.00793,0.03593,0.00793),(0.40037,0.01945,0.07023,0.01945)} {(0.00244,0.00183,0.00001,0.00001),(0.01072,0.00803,0.00022,0.00022),(0.02163,0.01618,0.00094,0.00094),(0.03478,0.02599,0.00255,0.00253),(0.05023,0.03751,0.00567,0.00559),(0.06838,0.05108,0.01143,0.01122),(0.09011,0.06754,0.02251,0.02192),(0.11766,0.08986,0.04928,0.04734)} {(0.00001,0.98902,0.00001,0.00004),(0.00012,0.95166,0.00012,0.00073),(0.00052,0.90215,0.00052,0.00302),(0.00143,0.84194,0.00143,0.00798),(0.00325,0.77013,0.00325,0.01712),(0.00678,0.68368,0.00678,0.03297),(0.01411,0.57482,0.01411,0.06058),(0.03458,0.41515,0.03458,0.11524)} {(0.00122,0.00001,0.00001,0.00182),(0.00536,0.00011,0.00011,0.00792),(0.01081,0.00047,0.00047,0.01571),(0.01739,0.00127,0.00128,0.02473),(0.02512,0.00280,0.00283,0.03472),(0.03419,0.00561,0.00571,0.04547),(0.04505,0.01096,0.01126,0.05657),(0.05883,0.02367,0.02464,0.06618)} {(0.00000,0.00304,0.00000,0.00605),(0.00006,0.01317,0.00006,0.02597),(0.00026,0.02609,0.00026,0.05068),(0.00071,0.04098,0.00071,0.07797),(0.00162,0.05742,0.00162,0.10628),(0.00339,0.07507,0.00339,0.13365),(0.00705,0.09330,0.00705,0.15632),(0.01729,0.10936,0.01729,0.16111)} {(0.00000,0.00000,0.98355,0.00000),(0.00005,0.00001,0.92785,0.00001),(0.00019,0.00003,0.85472,0.00003),(0.00051,0.00009,0.76700,0.00009),(0.00110,0.00020,0.66438,0.00020),(0.00214,0.00042,0.54425,0.00042),(0.00399,0.00088,0.39981,0.00088),(0.00780,0.00216,0.20801,0.00216)} {(0.00001,0.98902,0.00001,0.00004),(0.00012,0.95166,0.00012,0.00073),(0.00052,0.90215,0.00052,0.00302),(0.00143,0.84194,0.00143,0.00798),(0.00325,0.77013,0.00325,0.01712),(0.00678,0.68368,0.00678,0.03297),(0.01411,0.57482,0.01411,0.06058),(0.03458,0.41515,0.03458,0.11524)} {(0.00000,0.00001,0.00000,0.98296),(0.00003,0.00018,0.00003,0.92551),(0.00013,0.00075,0.00013,0.85072),(0.00036,0.00199,0.00036,0.76197),(0.00081,0.00428,0.00081,0.65958),(0.00170,0.00824,0.00170,0.54179),(0.00353,0.01514,0.00353,0.40336),(0.00864,0.02881,0.00864,0.22523)} {(0.98962,0.00000,0.00002,0.00000),(0.95410,0.00007,0.00041,0.00007),(0.90654,0.00029,0.00172,0.00029),(0.84792,0.00080,0.00456,0.00080),(0.77681,0.00183,0.00988,0.00183),(0.68925,0.00382,0.01924,0.00382),(0.57557,0.00793,0.03593,0.00793),(0.40037,0.01945,0.07023,0.01945)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.98962,0.00000,0.00002,0.00000),(0.95410,0.00007,0.00041,0.00007),(0.90654,0.00029,0.00172,0.00029),(0.84792,0.00080,0.00456,0.00080),(0.77681,0.00183,0.00988,0.00183),(0.68925,0.00382,0.01924,0.00382),(0.57557,0.00793,0.03593,0.00793),(0.40037,0.01945,0.07023,0.01945)} {(0.00000,0.00001,0.00000,0.98296),(0.00003,0.00018,0.00003,0.92551),(0.00013,0.00075,0.00013,0.85072),(0.00036,0.00199,0.00036,0.76197),(0.00081,0.00428,0.00081,0.65958),(0.00170,0.00824,0.00170,0.54179),(0.00353,0.01514,0.00353,0.40336),(0.00864,0.02881,0.00864,0.22523)} {(0.00000,0.00001,0.00000,0.98296),(0.00003,0.00018,0.00003,0.92551),(0.00013,0.00075,0.00013,0.85072),(0.00036,0.00199,0.00036,0.76197),(0.00081,0.00428,0.00081,0.65958),(0.00170,0.00824,0.00170,0.54179),(0.00353,0.01514,0.00353,0.40336),(0.00864,0.02881,0.00864,0.22523)} {(0.00000,0.00061,0.00243,0.00000),(0.00007,0.00268,0.01057,0.00007),(0.00031,0.00539,0.02100,0.00031),(0.00085,0.00866,0.03308,0.00084),(0.00189,0.01250,0.04646,0.00186),(0.00381,0.01703,0.06076,0.00374),(0.00750,0.02251,0.07510,0.00731),(0.01643,0.02995,0.08481,0.01578)} {(0.00000,0.00001,0.00000,0.98296),(0.00003,0.00018,0.00003,0.92551),(0.00013,0.00075,0.00013,0.85072),(0.00036,0.00199,0.00036,0.76197),(0.00081,0.00428,0.00081,0.65958),(0.00170,0.00824,0.00170,0.54179),(0.00353,0.01514,0.00353,0.40336),(0.00864,0.02881,0.00864,0.22523)} {(0.00244,0.00183,0.00001,0.00001),(0.01072,0.00803,0.00022,0.00022),(0.02163,0.01618,0.00094,0.00094),(0.03478,0.02599,0.00255,0.00253),(0.05023,0.03751,0.00567,0.00559),(0.06838,0.05108,0.01143,0.01122),(0.09011,0.06754,0.02251,0.02192),(0.11766,0.08986,0.04928,0.04734)} {(0.00122,0.00001,0.00001,0.00182),(0.00536,0.00011,0.00011,0.00792),(0.01081,0.00047,0.00047,0.01571),(0.01739,0.00127,0.00128,0.02473),(0.02512,0.00280,0.00283,0.03472),(0.03419,0.00561,0.00571,0.04547),(0.04505,0.01096,0.01126,0.05657),(0.05883,0.02367,0.02464,0.06618)} {(0.00000,0.00001,0.00000,0.98296),(0.00003,0.00018,0.00003,0.92551),(0.00013,0.00075,0.00013,0.85072),(0.00036,0.00199,0.00036,0.76197),(0.00081,0.00428,0.00081,0.65958),(0.00170,0.00824,0.00170,0.54179),(0.00353,0.01514,0.00353,0.40336),(0.00864,0.02881,0.00864,0.22523)} ] +[2] CLV 6: [ {(0.00243,0.00001,0.00000,0.00001),(0.01059,0.00017,0.00001,0.00021),(0.02108,0.00072,0.00010,0.00087),(0.03329,0.00188,0.00043,0.00223),(0.04691,0.00402,0.00137,0.00464),(0.06166,0.00767,0.00373,0.00860),(0.07691,0.01398,0.00955,0.01509),(0.08974,0.02671,0.02659,0.02742)} {(0.00151,0.00000,0.00228,0.00000),(0.00638,0.00001,0.00984,0.00001),(0.01221,0.00005,0.01939,0.00005),(0.01832,0.00012,0.03008,0.00012),(0.02415,0.00027,0.04121,0.00027),(0.02900,0.00054,0.05168,0.00054),(0.03162,0.00107,0.05906,0.00107),(0.02825,0.00239,0.05455,0.00239)} {(0.00243,0.00183,0.00002,0.00002),(0.01064,0.00797,0.00037,0.00037),(0.02130,0.01597,0.00156,0.00155),(0.03391,0.02545,0.00415,0.00410),(0.04840,0.03643,0.00899,0.00885),(0.06491,0.04918,0.01755,0.01716),(0.08393,0.06456,0.03294,0.03192),(0.10692,0.08618,0.06545,0.06271)} {(0.00000,0.98086,0.00000,0.00002),(0.00006,0.91689,0.00006,0.00037),(0.00025,0.83491,0.00025,0.00156),(0.00067,0.73961,0.00067,0.00421),(0.00149,0.63252,0.00149,0.00917),(0.00303,0.51346,0.00303,0.01784),(0.00616,0.37978,0.00616,0.03272),(0.01483,0.21923,0.01483,0.05929)} {(0.00122,0.00001,0.00001,0.00182),(0.00532,0.00019,0.00019,0.00779),(0.01065,0.00077,0.00078,0.01519),(0.01696,0.00205,0.00207,0.02340),(0.02420,0.00442,0.00450,0.03201),(0.03246,0.00858,0.00878,0.04060),(0.04197,0.01596,0.01647,0.04860),(0.05346,0.03135,0.03273,0.05483)} {(0.00000,0.00001,0.00000,0.00599),(0.00000,0.00018,0.00000,0.02468),(0.00001,0.00072,0.00001,0.04556),(0.00004,0.00183,0.00004,0.06524),(0.00014,0.00376,0.00014,0.08099),(0.00039,0.00680,0.00039,0.08979),(0.00104,0.01136,0.00104,0.08729),(0.00324,0.01788,0.00324,0.06356)} {(0.00000,0.00000,0.97139,0.00000),(0.00002,0.00000,0.87715,0.00000),(0.00009,0.00001,0.75971,0.00001),(0.00022,0.00004,0.62844,0.00004),(0.00043,0.00007,0.48857,0.00007),(0.00074,0.00013,0.34437,0.00013),(0.00116,0.00022,0.20044,0.00022),(0.00164,0.00038,0.06382,0.00038)} {(0.00000,0.98086,0.00000,0.00002),(0.00006,0.91689,0.00006,0.00037),(0.00025,0.83491,0.00025,0.00156),(0.00067,0.73961,0.00067,0.00421),(0.00149,0.63252,0.00149,0.00917),(0.00303,0.51346,0.00303,0.01784),(0.00616,0.37978,0.00616,0.03272),(0.01483,0.21923,0.01483,0.05929)} {(0.00060,0.00000,0.00000,0.00180),(0.00253,0.00005,0.00005,0.00747),(0.00480,0.00022,0.00021,0.01391),(0.00714,0.00056,0.00052,0.02015),(0.00940,0.00117,0.00106,0.02538),(0.01141,0.00217,0.00191,0.02865),(0.01304,0.00382,0.00326,0.02856),(0.01420,0.00682,0.00595,0.02195)} {(0.00151,0.00000,0.00228,0.00000),(0.00638,0.00001,0.00984,0.00001),(0.01221,0.00005,0.01939,0.00005),(0.01832,0.00012,0.03008,0.00012),(0.02415,0.00027,0.04121,0.00027),(0.02900,0.00054,0.05168,0.00054),(0.03162,0.00107,0.05906,0.00107),(0.02825,0.00239,0.05455,0.00239)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00242,0.00091,0.00001,0.00001),(0.01034,0.00392,0.00011,0.00011),(0.02009,0.00772,0.00048,0.00045),(0.03072,0.01203,0.00130,0.00117),(0.04154,0.01675,0.00288,0.00250),(0.05166,0.02181,0.00577,0.00479),(0.05944,0.02721,0.01109,0.00883),(0.05947,0.03318,0.02224,0.01748)} {(0.00000,0.00000,0.00000,0.97037),(0.00001,0.00009,0.00001,0.87326),(0.00006,0.00035,0.00006,0.75340),(0.00015,0.00089,0.00015,0.62106),(0.00030,0.00179,0.00030,0.48213),(0.00057,0.00320,0.00057,0.34138),(0.00102,0.00527,0.00102,0.20364),(0.00209,0.00831,0.00209,0.07469)} {(0.00000,0.00000,0.00000,0.97037),(0.00001,0.00009,0.00001,0.87326),(0.00006,0.00035,0.00006,0.75340),(0.00015,0.00089,0.00015,0.62106),(0.00030,0.00179,0.00030,0.48213),(0.00057,0.00320,0.00057,0.34138),(0.00102,0.00527,0.00102,0.20364),(0.00209,0.00831,0.00209,0.07469)} {(0.00000,0.00061,0.00001,0.00000),(0.00000,0.00259,0.00011,0.00000),(0.00001,0.00506,0.00046,0.00003),(0.00005,0.00779,0.00118,0.00012),(0.00017,0.01066,0.00242,0.00039),(0.00048,0.01355,0.00438,0.00104),(0.00130,0.01632,0.00736,0.00262),(0.00406,0.01851,0.01177,0.00710)} {(0.00000,0.00000,0.00000,0.97037),(0.00001,0.00009,0.00001,0.87326),(0.00006,0.00035,0.00006,0.75340),(0.00015,0.00089,0.00015,0.62106),(0.00030,0.00179,0.00030,0.48213),(0.00057,0.00320,0.00057,0.34138),(0.00102,0.00527,0.00102,0.20364),(0.00209,0.00831,0.00209,0.07469)} {(0.00242,0.00000,0.00000,0.00000),(0.01039,0.00007,0.00001,0.00000),(0.02028,0.00027,0.00006,0.00003),(0.03123,0.00072,0.00028,0.00012),(0.04266,0.00156,0.00089,0.00038),(0.05389,0.00304,0.00243,0.00106),(0.06368,0.00575,0.00624,0.00284),(0.06765,0.01202,0.01735,0.00874)} {(0.00000,0.00001,0.00000,0.00001),(0.00006,0.00018,0.00000,0.00021),(0.00024,0.00073,0.00002,0.00083),(0.00064,0.00188,0.00008,0.00209),(0.00138,0.00388,0.00026,0.00419),(0.00267,0.00709,0.00072,0.00737),(0.00498,0.01210,0.00196,0.01196),(0.00994,0.02020,0.00609,0.01861)} {(0.00000,0.00000,0.00000,0.97037),(0.00001,0.00009,0.00001,0.87326),(0.00006,0.00035,0.00006,0.75340),(0.00015,0.00089,0.00015,0.62106),(0.00030,0.00179,0.00030,0.48213),(0.00057,0.00320,0.00057,0.34138),(0.00102,0.00527,0.00102,0.20364),(0.00209,0.00831,0.00209,0.07469)} ] +[2] CLV 7: [ {(0.00001,0.98902,0.00001,0.00004),(0.00012,0.95166,0.00012,0.00073),(0.00052,0.90215,0.00052,0.00302),(0.00143,0.84194,0.00143,0.00798),(0.00325,0.77013,0.00325,0.01712),(0.00678,0.68368,0.00678,0.03297),(0.01411,0.57482,0.01411,0.06058),(0.03458,0.41515,0.03458,0.11524)} {(0.00000,0.00000,0.98355,0.00000),(0.00005,0.00001,0.92785,0.00001),(0.00019,0.00003,0.85472,0.00003),(0.00051,0.00009,0.76700,0.00009),(0.00110,0.00020,0.66438,0.00020),(0.00214,0.00042,0.54425,0.00042),(0.00399,0.00088,0.39981,0.00088),(0.00780,0.00216,0.20801,0.00216)} {(0.00122,0.00001,0.00001,0.00182),(0.00536,0.00011,0.00011,0.00792),(0.01081,0.00047,0.00047,0.01571),(0.01739,0.00127,0.00128,0.02473),(0.02512,0.00280,0.00283,0.03472),(0.03419,0.00561,0.00571,0.04547),(0.04505,0.01096,0.01126,0.05657),(0.05883,0.02367,0.02464,0.06618)} {(0.00001,0.98902,0.00001,0.00004),(0.00012,0.95166,0.00012,0.00073),(0.00052,0.90215,0.00052,0.00302),(0.00143,0.84194,0.00143,0.00798),(0.00325,0.77013,0.00325,0.01712),(0.00678,0.68368,0.00678,0.03297),(0.01411,0.57482,0.01411,0.06058),(0.03458,0.41515,0.03458,0.11524)} {(0.00000,0.00001,0.00000,0.98296),(0.00003,0.00018,0.00003,0.92551),(0.00013,0.00075,0.00013,0.85072),(0.00036,0.00199,0.00036,0.76197),(0.00081,0.00428,0.00081,0.65958),(0.00170,0.00824,0.00170,0.54179),(0.00353,0.01514,0.00353,0.40336),(0.00864,0.02881,0.00864,0.22523)} {(0.00000,0.00001,0.00000,0.98296),(0.00003,0.00018,0.00003,0.92551),(0.00013,0.00075,0.00013,0.85072),(0.00036,0.00199,0.00036,0.76197),(0.00081,0.00428,0.00081,0.65958),(0.00170,0.00824,0.00170,0.54179),(0.00353,0.01514,0.00353,0.40336),(0.00864,0.02881,0.00864,0.22523)} {(0.00000,0.00000,0.98355,0.00000),(0.00005,0.00001,0.92785,0.00001),(0.00019,0.00003,0.85472,0.00003),(0.00051,0.00009,0.76700,0.00009),(0.00110,0.00020,0.66438,0.00020),(0.00214,0.00042,0.54425,0.00042),(0.00399,0.00088,0.39981,0.00088),(0.00780,0.00216,0.20801,0.00216)} {(0.00001,0.98902,0.00001,0.00004),(0.00012,0.95166,0.00012,0.00073),(0.00052,0.90215,0.00052,0.00302),(0.00143,0.84194,0.00143,0.00798),(0.00325,0.77013,0.00325,0.01712),(0.00678,0.68368,0.00678,0.03297),(0.01411,0.57482,0.01411,0.06058),(0.03458,0.41515,0.03458,0.11524)} {(0.00244,0.00183,0.00001,0.00001),(0.01072,0.00803,0.00022,0.00022),(0.02163,0.01618,0.00094,0.00094),(0.03478,0.02599,0.00255,0.00253),(0.05023,0.03751,0.00567,0.00559),(0.06838,0.05108,0.01143,0.01122),(0.09011,0.06754,0.02251,0.02192),(0.11766,0.08986,0.04928,0.04734)} {(0.98962,0.00000,0.00002,0.00000),(0.95410,0.00007,0.00041,0.00007),(0.90654,0.00029,0.00172,0.00029),(0.84792,0.00080,0.00456,0.00080),(0.77681,0.00183,0.00988,0.00183),(0.68925,0.00382,0.01924,0.00382),(0.57557,0.00793,0.03593,0.00793),(0.40037,0.01945,0.07023,0.01945)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.98962,0.00000,0.00002,0.00000),(0.95410,0.00007,0.00041,0.00007),(0.90654,0.00029,0.00172,0.00029),(0.84792,0.00080,0.00456,0.00080),(0.77681,0.00183,0.00988,0.00183),(0.68925,0.00382,0.01924,0.00382),(0.57557,0.00793,0.03593,0.00793),(0.40037,0.01945,0.07023,0.01945)} {(0.00000,0.00001,0.00000,0.98296),(0.00003,0.00018,0.00003,0.92551),(0.00013,0.00075,0.00013,0.85072),(0.00036,0.00199,0.00036,0.76197),(0.00081,0.00428,0.00081,0.65958),(0.00170,0.00824,0.00170,0.54179),(0.00353,0.01514,0.00353,0.40336),(0.00864,0.02881,0.00864,0.22523)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00304,0.00000,0.00605),(0.00006,0.01317,0.00006,0.02597),(0.00026,0.02609,0.00026,0.05068),(0.00071,0.04098,0.00071,0.07797),(0.00162,0.05742,0.00162,0.10628),(0.00339,0.07507,0.00339,0.13365),(0.00705,0.09330,0.00705,0.15632),(0.01729,0.10936,0.01729,0.16111)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.98962,0.00000,0.00002,0.00000),(0.95410,0.00007,0.00041,0.00007),(0.90654,0.00029,0.00172,0.00029),(0.84792,0.00080,0.00456,0.00080),(0.77681,0.00183,0.00988,0.00183),(0.68925,0.00382,0.01924,0.00382),(0.57557,0.00793,0.03593,0.00793),(0.40037,0.01945,0.07023,0.01945)} {(0.98962,0.00000,0.00002,0.00000),(0.95410,0.00007,0.00041,0.00007),(0.90654,0.00029,0.00172,0.00029),(0.84792,0.00080,0.00456,0.00080),(0.77681,0.00183,0.00988,0.00183),(0.68925,0.00382,0.01924,0.00382),(0.57557,0.00793,0.03593,0.00793),(0.40037,0.01945,0.07023,0.01945)} {(0.00000,0.00000,0.98355,0.00000),(0.00005,0.00001,0.92785,0.00001),(0.00019,0.00003,0.85472,0.00003),(0.00051,0.00009,0.76700,0.00009),(0.00110,0.00020,0.66438,0.00020),(0.00214,0.00042,0.54425,0.00042),(0.00399,0.00088,0.39981,0.00088),(0.00780,0.00216,0.20801,0.00216)} ] + + + TEST alpha(ncats) = 0.75( 8), mode = MEDIAN + +0.032582 0.137187 0.286685 0.485709 0.752940 1.131212 1.739477 3.434208 +[2] P-matrix for branch length 0.100000 ++0.9973 +0.0013 +0.0008 +0.0006 ++0.0009 +0.9972 +0.0003 +0.0016 ++0.0024 +0.0013 +0.9957 +0.0006 ++0.0009 +0.0032 +0.0003 +0.9956 + ++0.9888 +0.0053 +0.0033 +0.0026 ++0.0040 +0.9881 +0.0013 +0.0066 ++0.0099 +0.0053 +0.9822 +0.0026 ++0.0040 +0.0131 +0.0013 +0.9816 + ++0.9768 +0.0110 +0.0068 +0.0055 ++0.0082 +0.9755 +0.0027 +0.0135 ++0.0203 +0.0110 +0.9632 +0.0055 ++0.0082 +0.0270 +0.0027 +0.9620 + ++0.9611 +0.0184 +0.0113 +0.0092 ++0.0138 +0.9592 +0.0046 +0.0224 ++0.0338 +0.0184 +0.9386 +0.0092 +0.0138 +0.0449 +0.0046 +0.9367 +0.9407 +0.0282 +0.0170 +0.0141 @@ -2220,7 +4440,183 @@ [2] CLV 7: [ {(0.00001,0.98870,0.00001,0.00004),(0.00011,0.95363,0.00011,0.00067),(0.00047,0.90651,0.00047,0.00275),(0.00130,0.84882,0.00130,0.00729),(0.00296,0.77948,0.00296,0.01573),(0.00622,0.69502,0.00622,0.03058),(0.01315,0.58628,0.01315,0.05727),(0.03790,0.39788,0.03790,0.12187)} {(0.00000,0.00000,0.98307,0.00000),(0.00004,0.00001,0.93077,0.00001),(0.00017,0.00003,0.86112,0.00003),(0.00046,0.00008,0.77695,0.00008),(0.00101,0.00019,0.67760,0.00019),(0.00198,0.00039,0.55976,0.00039),(0.00377,0.00082,0.41458,0.00082),(0.00828,0.00237,0.18926,0.00237)} {(0.00125,0.00001,0.00001,0.00188),(0.00514,0.00010,0.00010,0.00760),(0.01033,0.00043,0.00043,0.01504),(0.01664,0.00115,0.00116,0.02372),(0.02412,0.00256,0.00259,0.03347),(0.03302,0.00517,0.00527,0.04415),(0.04395,0.01029,0.01056,0.05555),(0.06006,0.02548,0.02657,0.06661)} {(0.00001,0.98870,0.00001,0.00004),(0.00011,0.95363,0.00011,0.00067),(0.00047,0.90651,0.00047,0.00275),(0.00130,0.84882,0.00130,0.00729),(0.00296,0.77948,0.00296,0.01573),(0.00622,0.69502,0.00622,0.03058),(0.01315,0.58628,0.01315,0.05727),(0.03790,0.39788,0.03790,0.12187)} {(0.00000,0.00001,0.00000,0.98246),(0.00003,0.00017,0.00003,0.92851),(0.00012,0.00069,0.00012,0.85724),(0.00032,0.00182,0.00032,0.77199),(0.00074,0.00393,0.00074,0.67268),(0.00156,0.00765,0.00156,0.55687),(0.00329,0.01432,0.00329,0.41735),(0.00947,0.03047,0.00947,0.20815)} {(0.00000,0.00001,0.00000,0.98246),(0.00003,0.00017,0.00003,0.92851),(0.00012,0.00069,0.00012,0.85724),(0.00032,0.00182,0.00032,0.77199),(0.00074,0.00393,0.00074,0.67268),(0.00156,0.00765,0.00156,0.55687),(0.00329,0.01432,0.00329,0.41735),(0.00947,0.03047,0.00947,0.20815)} {(0.00000,0.00000,0.98307,0.00000),(0.00004,0.00001,0.93077,0.00001),(0.00017,0.00003,0.86112,0.00003),(0.00046,0.00008,0.77695,0.00008),(0.00101,0.00019,0.67760,0.00019),(0.00198,0.00039,0.55976,0.00039),(0.00377,0.00082,0.41458,0.00082),(0.00828,0.00237,0.18926,0.00237)} {(0.00001,0.98870,0.00001,0.00004),(0.00011,0.95363,0.00011,0.00067),(0.00047,0.90651,0.00047,0.00275),(0.00130,0.84882,0.00130,0.00729),(0.00296,0.77948,0.00296,0.01573),(0.00622,0.69502,0.00622,0.03058),(0.01315,0.58628,0.01315,0.05727),(0.03790,0.39788,0.03790,0.12187)} {(0.00251,0.00188,0.00001,0.00001),(0.01028,0.00770,0.00020,0.00020),(0.02067,0.01547,0.00086,0.00085),(0.03328,0.02488,0.00232,0.00231),(0.04824,0.03603,0.00518,0.00512),(0.06604,0.04932,0.01053,0.01035),(0.08790,0.06584,0.02111,0.02058),(0.12011,0.09209,0.05314,0.05097)} {(0.98932,0.00000,0.00002,0.00000),(0.95597,0.00006,0.00038,0.00006),(0.91075,0.00026,0.00156,0.00026),(0.85467,0.00073,0.00417,0.00073),(0.78614,0.00167,0.00907,0.00167),(0.70086,0.00350,0.01782,0.00350),(0.58774,0.00739,0.03391,0.00739),(0.38071,0.02132,0.07450,0.02132)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.98932,0.00000,0.00002,0.00000),(0.95597,0.00006,0.00038,0.00006),(0.91075,0.00026,0.00156,0.00026),(0.85467,0.00073,0.00417,0.00073),(0.78614,0.00167,0.00907,0.00167),(0.70086,0.00350,0.01782,0.00350),(0.58774,0.00739,0.03391,0.00739),(0.38071,0.02132,0.07450,0.02132)} {(0.00000,0.00001,0.00000,0.98246),(0.00003,0.00017,0.00003,0.92851),(0.00012,0.00069,0.00012,0.85724),(0.00032,0.00182,0.00032,0.77199),(0.00074,0.00393,0.00074,0.67268),(0.00156,0.00765,0.00156,0.55687),(0.00329,0.01432,0.00329,0.41735),(0.00947,0.03047,0.00947,0.20815)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00312,0.00000,0.00623),(0.00006,0.01264,0.00006,0.02495),(0.00023,0.02498,0.00023,0.04858),(0.00065,0.03933,0.00065,0.07501),(0.00148,0.05537,0.00148,0.10287),(0.00311,0.07290,0.00311,0.13050),(0.00657,0.09162,0.00657,0.15461),(0.01895,0.11010,0.01895,0.15927)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.98932,0.00000,0.00002,0.00000),(0.95597,0.00006,0.00038,0.00006),(0.91075,0.00026,0.00156,0.00026),(0.85467,0.00073,0.00417,0.00073),(0.78614,0.00167,0.00907,0.00167),(0.70086,0.00350,0.01782,0.00350),(0.58774,0.00739,0.03391,0.00739),(0.38071,0.02132,0.07450,0.02132)} {(0.98932,0.00000,0.00002,0.00000),(0.95597,0.00006,0.00038,0.00006),(0.91075,0.00026,0.00156,0.00026),(0.85467,0.00073,0.00417,0.00073),(0.78614,0.00167,0.00907,0.00167),(0.70086,0.00350,0.01782,0.00350),(0.58774,0.00739,0.03391,0.00739),(0.38071,0.02132,0.07450,0.02132)} {(0.00000,0.00000,0.98307,0.00000),(0.00004,0.00001,0.93077,0.00001),(0.00017,0.00003,0.86112,0.00003),(0.00046,0.00008,0.77695,0.00008),(0.00101,0.00019,0.67760,0.00019),(0.00198,0.00039,0.55976,0.00039),(0.00377,0.00082,0.41458,0.00082),(0.00828,0.00237,0.18926,0.00237)} ] - TEST alpha(ncats) = 1.00( 8) + TEST alpha(ncats) = 1.00( 8), mode = MEAN + +0.067415 0.216895 0.391395 0.601010 0.863526 1.214996 1.748591 2.896172 +[3] P-matrix for branch length 0.100000 ++0.9945 +0.0026 +0.0016 +0.0013 ++0.0020 +0.9941 +0.0007 +0.0032 ++0.0049 +0.0026 +0.9912 +0.0013 ++0.0020 +0.0065 +0.0007 +0.9909 + ++0.9823 +0.0083 +0.0052 +0.0042 ++0.0063 +0.9814 +0.0021 +0.0103 ++0.0155 +0.0083 +0.9720 +0.0042 ++0.0063 +0.0206 +0.0021 +0.9711 + ++0.9685 +0.0149 +0.0092 +0.0075 ++0.0112 +0.9668 +0.0037 +0.0182 ++0.0275 +0.0149 +0.9502 +0.0075 ++0.0112 +0.0365 +0.0037 +0.9486 + ++0.9522 +0.0227 +0.0138 +0.0113 ++0.0170 +0.9499 +0.0057 +0.0274 ++0.0413 +0.0227 +0.9246 +0.0113 ++0.0170 +0.0548 +0.0057 +0.9225 + ++0.9324 +0.0322 +0.0193 +0.0161 ++0.0241 +0.9295 +0.0080 +0.0384 ++0.0580 +0.0322 +0.8938 +0.0161 ++0.0241 +0.0767 +0.0080 +0.8911 + ++0.9069 +0.0445 +0.0263 +0.0223 ++0.0334 +0.9034 +0.0111 +0.0521 ++0.0789 +0.0445 +0.8543 +0.0223 ++0.0334 +0.1042 +0.0111 +0.8513 + ++0.8703 +0.0625 +0.0360 +0.0312 ++0.0468 +0.8665 +0.0156 +0.0711 ++0.1081 +0.0625 +0.7982 +0.0312 ++0.0468 +0.1422 +0.0156 +0.7954 + ++0.7991 +0.0980 +0.0538 +0.0490 ++0.0735 +0.7967 +0.0245 +0.1053 ++0.1614 +0.0980 +0.6915 +0.0490 ++0.0735 +0.2106 +0.0245 +0.6914 + + +[3] P-matrix for branch length 0.200000 ++0.9890 +0.0052 +0.0032 +0.0026 ++0.0039 +0.9883 +0.0013 +0.0065 ++0.0097 +0.0052 +0.9825 +0.0026 ++0.0039 +0.0129 +0.0013 +0.9819 + ++0.9652 +0.0165 +0.0101 +0.0082 ++0.0124 +0.9634 +0.0041 +0.0201 ++0.0303 +0.0165 +0.9449 +0.0082 ++0.0124 +0.0403 +0.0041 +0.9432 + ++0.9384 +0.0293 +0.0176 +0.0146 ++0.0220 +0.9357 +0.0073 +0.0351 ++0.0529 +0.0293 +0.9032 +0.0146 ++0.0220 +0.0701 +0.0073 +0.9006 + ++0.9079 +0.0441 +0.0261 +0.0220 ++0.0330 +0.9043 +0.0110 +0.0516 ++0.0782 +0.0441 +0.8557 +0.0220 ++0.0330 +0.1032 +0.0110 +0.8527 + ++0.8717 +0.0617 +0.0357 +0.0309 ++0.0463 +0.8679 +0.0154 +0.0704 ++0.1070 +0.0617 +0.8004 +0.0309 ++0.0463 +0.1407 +0.0154 +0.7975 + ++0.8268 +0.0841 +0.0471 +0.0420 ++0.0630 +0.8235 +0.0210 +0.0924 ++0.1412 +0.0841 +0.7327 +0.0420 ++0.0630 +0.1848 +0.0210 +0.7311 + ++0.7657 +0.1152 +0.0616 +0.0576 ++0.0864 +0.7648 +0.0288 +0.1201 ++0.1848 +0.1152 +0.6425 +0.0576 ++0.0864 +0.2402 +0.0288 +0.6447 + ++0.6581 +0.1721 +0.0838 +0.0860 ++0.1290 +0.6665 +0.0430 +0.1615 ++0.2514 +0.1721 +0.4905 +0.0860 ++0.1290 +0.3229 +0.0430 +0.5050 + + +[3] P-matrix for branch length 1.000000 ++0.9466 +0.0253 +0.0154 +0.0127 ++0.0190 +0.9441 +0.0063 +0.0305 ++0.0461 +0.0253 +0.9159 +0.0127 ++0.0190 +0.0611 +0.0063 +0.9136 + ++0.8430 +0.0760 +0.0430 +0.0380 ++0.0570 +0.8394 +0.0190 +0.0846 ++0.1291 +0.0760 +0.7570 +0.0380 ++0.0570 +0.1692 +0.0190 +0.7549 + ++0.7438 +0.1265 +0.0665 +0.0632 ++0.0948 +0.7443 +0.0316 +0.1293 ++0.1994 +0.1265 +0.6109 +0.0632 ++0.0948 +0.2585 +0.0316 +0.6150 + ++0.6494 +0.1768 +0.0854 +0.0884 ++0.1326 +0.6588 +0.0442 +0.1644 ++0.2562 +0.1768 +0.4785 +0.0884 ++0.1326 +0.3288 +0.0442 +0.4944 + ++0.5600 +0.2270 +0.0995 +0.1135 ++0.1703 +0.5831 +0.0568 +0.1899 ++0.2985 +0.2270 +0.3610 +0.1135 ++0.1703 +0.3798 +0.0568 +0.3932 + ++0.4762 +0.2770 +0.1082 +0.1385 ++0.2078 +0.5174 +0.0693 +0.2055 ++0.3247 +0.2770 +0.2597 +0.1385 ++0.2078 +0.4111 +0.0693 +0.3119 + ++0.3989 +0.3268 +0.1109 +0.1634 ++0.2451 +0.4621 +0.0817 +0.2112 ++0.3328 +0.3268 +0.1771 +0.1634 ++0.2451 +0.4223 +0.0817 +0.2509 + ++0.3298 +0.3760 +0.1062 +0.1880 ++0.2820 +0.4176 +0.0940 +0.2064 ++0.3187 +0.3760 +0.1174 +0.1880 ++0.2820 +0.4128 +0.0940 +0.2112 + + +[3] P-matrix for branch length 1.000000 ++0.9466 +0.0253 +0.0154 +0.0127 ++0.0190 +0.9441 +0.0063 +0.0305 ++0.0461 +0.0253 +0.9159 +0.0127 ++0.0190 +0.0611 +0.0063 +0.9136 + ++0.8430 +0.0760 +0.0430 +0.0380 ++0.0570 +0.8394 +0.0190 +0.0846 ++0.1291 +0.0760 +0.7570 +0.0380 ++0.0570 +0.1692 +0.0190 +0.7549 + ++0.7438 +0.1265 +0.0665 +0.0632 ++0.0948 +0.7443 +0.0316 +0.1293 ++0.1994 +0.1265 +0.6109 +0.0632 ++0.0948 +0.2585 +0.0316 +0.6150 + ++0.6494 +0.1768 +0.0854 +0.0884 ++0.1326 +0.6588 +0.0442 +0.1644 ++0.2562 +0.1768 +0.4785 +0.0884 ++0.1326 +0.3288 +0.0442 +0.4944 + ++0.5600 +0.2270 +0.0995 +0.1135 ++0.1703 +0.5831 +0.0568 +0.1899 ++0.2985 +0.2270 +0.3610 +0.1135 ++0.1703 +0.3798 +0.0568 +0.3932 + ++0.4762 +0.2770 +0.1082 +0.1385 ++0.2078 +0.5174 +0.0693 +0.2055 ++0.3247 +0.2770 +0.2597 +0.1385 ++0.2078 +0.4111 +0.0693 +0.3119 + ++0.3989 +0.3268 +0.1109 +0.1634 ++0.2451 +0.4621 +0.0817 +0.2112 ++0.3328 +0.3268 +0.1771 +0.1634 ++0.2451 +0.4223 +0.0817 +0.2509 + ++0.3298 +0.3760 +0.1062 +0.1880 ++0.2820 +0.4176 +0.0940 +0.2064 ++0.3187 +0.3760 +0.1174 +0.1880 ++0.2820 +0.4128 +0.0940 +0.2112 + + +[3] CLV 5: [ {(0.00516,0.01024,0.00006,0.01273),(0.01606,0.03132,0.00064,0.03848),(0.02790,0.05335,0.00198,0.06469),(0.04097,0.07655,0.00442,0.09142),(0.05573,0.10126,0.00851,0.11874),(0.07304,0.12801,0.01541,0.14676),(0.09480,0.15788,0.02791,0.17557),(0.12803,0.19362,0.05806,0.20476)} {(0.97805,0.00002,0.00009,0.00002),(0.93152,0.00015,0.00092,0.00015),(0.88068,0.00048,0.00280,0.00048),(0.82419,0.00109,0.00611,0.00109),(0.75987,0.00214,0.01145,0.00214),(0.68364,0.00397,0.01995,0.00397),(0.58624,0.00746,0.03415,0.00746),(0.43310,0.01665,0.06322,0.01665)} {(0.00514,0.00386,0.00005,0.00005),(0.01592,0.01192,0.00050,0.00050),(0.02747,0.02054,0.00155,0.00154),(0.04000,0.02988,0.00344,0.00341),(0.05383,0.04019,0.00661,0.00652),(0.06951,0.05192,0.01187,0.01165),(0.08817,0.06605,0.02128,0.02074),(0.11323,0.08600,0.04326,0.04167)} {(0.00003,0.97682,0.00003,0.00017),(0.00027,0.92808,0.00027,0.00162),(0.00086,0.87547,0.00086,0.00492),(0.00194,0.81783,0.00194,0.01065),(0.00381,0.75324,0.00381,0.01980),(0.00707,0.67822,0.00707,0.03415),(0.01326,0.58486,0.01326,0.05768),(0.02960,0.44418,0.02960,0.10429)} {(0.00257,0.00003,0.00003,0.00383),(0.00796,0.00025,0.00025,0.01167),(0.01374,0.00077,0.00077,0.01977),(0.02000,0.00171,0.00172,0.02818),(0.02691,0.00326,0.00330,0.03694),(0.03475,0.00583,0.00594,0.04610),(0.04409,0.01037,0.01064,0.05568),(0.05662,0.02084,0.02163,0.06517)} {(0.00001,0.00638,0.00001,0.01267),(0.00014,0.01940,0.00014,0.03798),(0.00043,0.03281,0.00043,0.06315),(0.00097,0.04667,0.00097,0.08801),(0.00191,0.06106,0.00191,0.11223),(0.00353,0.07609,0.00353,0.13511),(0.00663,0.09183,0.00663,0.15483),(0.01480,0.10762,0.01480,0.16309)} {(0.00001,0.00000,0.96531,0.00000),(0.00010,0.00002,0.89291,0.00002),(0.00031,0.00005,0.81568,0.00005),(0.00068,0.00012,0.73228,0.00012),(0.00127,0.00024,0.64058,0.00024),(0.00222,0.00044,0.53680,0.00044),(0.00379,0.00083,0.41275,0.00083),(0.00702,0.00185,0.24056,0.00185)} {(0.00003,0.97682,0.00003,0.00017),(0.00027,0.92808,0.00027,0.00162),(0.00086,0.87547,0.00086,0.00492),(0.00194,0.81783,0.00194,0.01065),(0.00381,0.75324,0.00381,0.01980),(0.00707,0.67822,0.00707,0.03415),(0.01326,0.58486,0.01326,0.05768),(0.02960,0.44418,0.02960,0.10429)} {(0.00001,0.00004,0.00001,0.96411),(0.00007,0.00041,0.00007,0.88969),(0.00021,0.00123,0.00021,0.81109),(0.00049,0.00266,0.00049,0.72715),(0.00095,0.00495,0.00095,0.63606),(0.00177,0.00854,0.00177,0.53457),(0.00332,0.01442,0.00332,0.41562),(0.00740,0.02607,0.00740,0.25502)} {(0.97805,0.00002,0.00009,0.00002),(0.93152,0.00015,0.00092,0.00015),(0.88068,0.00048,0.00280,0.00048),(0.82419,0.00109,0.00611,0.00109),(0.75987,0.00214,0.01145,0.00214),(0.68364,0.00397,0.01995,0.00397),(0.58624,0.00746,0.03415,0.00746),(0.43310,0.01665,0.06322,0.01665)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.97805,0.00002,0.00009,0.00002),(0.93152,0.00015,0.00092,0.00015),(0.88068,0.00048,0.00280,0.00048),(0.82419,0.00109,0.00611,0.00109),(0.75987,0.00214,0.01145,0.00214),(0.68364,0.00397,0.01995,0.00397),(0.58624,0.00746,0.03415,0.00746),(0.43310,0.01665,0.06322,0.01665)} {(0.00001,0.00004,0.00001,0.96411),(0.00007,0.00041,0.00007,0.88969),(0.00021,0.00123,0.00021,0.81109),(0.00049,0.00266,0.00049,0.72715),(0.00095,0.00495,0.00095,0.63606),(0.00177,0.00854,0.00177,0.53457),(0.00332,0.01442,0.00332,0.41562),(0.00740,0.02607,0.00740,0.25502)} {(0.00001,0.00004,0.00001,0.96411),(0.00007,0.00041,0.00007,0.88969),(0.00021,0.00123,0.00021,0.81109),(0.00049,0.00266,0.00049,0.72715),(0.00095,0.00495,0.00095,0.63606),(0.00177,0.00854,0.00177,0.53457),(0.00332,0.01442,0.00332,0.41562),(0.00740,0.02607,0.00740,0.25502)} {(0.00002,0.00129,0.00511,0.00002),(0.00017,0.00397,0.01559,0.00017),(0.00052,0.00685,0.02644,0.00051),(0.00115,0.00996,0.03770,0.00114),(0.00220,0.01340,0.04942,0.00217),(0.00396,0.01731,0.06159,0.00388),(0.00709,0.02202,0.07398,0.00691),(0.01442,0.02867,0.08439,0.01389)} {(0.00001,0.00004,0.00001,0.96411),(0.00007,0.00041,0.00007,0.88969),(0.00021,0.00123,0.00021,0.81109),(0.00049,0.00266,0.00049,0.72715),(0.00095,0.00495,0.00095,0.63606),(0.00177,0.00854,0.00177,0.53457),(0.00332,0.01442,0.00332,0.41562),(0.00740,0.02607,0.00740,0.25502)} {(0.00514,0.00386,0.00005,0.00005),(0.01592,0.01192,0.00050,0.00050),(0.02747,0.02054,0.00155,0.00154),(0.04000,0.02988,0.00344,0.00341),(0.05383,0.04019,0.00661,0.00652),(0.06951,0.05192,0.01187,0.01165),(0.08817,0.06605,0.02128,0.02074),(0.11323,0.08600,0.04326,0.04167)} {(0.00257,0.00003,0.00003,0.00383),(0.00796,0.00025,0.00025,0.01167),(0.01374,0.00077,0.00077,0.01977),(0.02000,0.00171,0.00172,0.02818),(0.02691,0.00326,0.00330,0.03694),(0.03475,0.00583,0.00594,0.04610),(0.04409,0.01037,0.01064,0.05568),(0.05662,0.02084,0.02163,0.06517)} {(0.00001,0.00004,0.00001,0.96411),(0.00007,0.00041,0.00007,0.88969),(0.00021,0.00123,0.00021,0.81109),(0.00049,0.00266,0.00049,0.72715),(0.00095,0.00495,0.00095,0.63606),(0.00177,0.00854,0.00177,0.53457),(0.00332,0.01442,0.00332,0.41562),(0.00740,0.02607,0.00740,0.25502)} ] +[3] CLV 6: [ {(0.00512,0.00004,0.00000,0.00005),(0.01563,0.00039,0.00004,0.00047),(0.02657,0.00117,0.00021,0.00140),(0.03799,0.00251,0.00067,0.00295),(0.04995,0.00463,0.00171,0.00533),(0.06252,0.00794,0.00394,0.00888),(0.07569,0.01331,0.00885,0.01442),(0.08849,0.02409,0.02259,0.02493)} {(0.00314,0.00000,0.00478,0.00000),(0.00925,0.00002,0.01446,0.00002),(0.01505,0.00008,0.02426,0.00008),(0.02045,0.00017,0.03403,0.00017),(0.02529,0.00032,0.04353,0.00032),(0.02923,0.00056,0.05221,0.00056),(0.03155,0.00101,0.05869,0.00101),(0.02950,0.00208,0.05694,0.00208)} {(0.00513,0.00384,0.00009,0.00009),(0.01574,0.01180,0.00083,0.00083),(0.02694,0.02020,0.00254,0.00252),(0.03885,0.02918,0.00555,0.00548),(0.05171,0.03896,0.01042,0.01024),(0.06592,0.04997,0.01820,0.01778),(0.08227,0.06317,0.03129,0.03035),(0.10329,0.08229,0.05867,0.05631)} {(0.00001,0.95978,0.00001,0.00008),(0.00013,0.87744,0.00013,0.00083),(0.00041,0.79208,0.00041,0.00257),(0.00090,0.70284,0.00090,0.00565),(0.00174,0.60839,0.00174,0.01063),(0.00316,0.50631,0.00316,0.01849),(0.00580,0.39132,0.00580,0.03118),(0.01272,0.24510,0.01272,0.05443)} {(0.00256,0.00004,0.00004,0.00380),(0.00787,0.00041,0.00042,0.01139),(0.01347,0.00126,0.00127,0.01894),(0.01943,0.00274,0.00278,0.02644),(0.02586,0.00512,0.00521,0.03384),(0.03296,0.00889,0.00910,0.04108),(0.04114,0.01518,0.01565,0.04799),(0.05164,0.02815,0.02933,0.05414)} {(0.00000,0.00004,0.00000,0.01237),(0.00000,0.00039,0.00000,0.03517),(0.00002,0.00115,0.00002,0.05504),(0.00007,0.00241,0.00007,0.07143),(0.00017,0.00430,0.00017,0.08354),(0.00041,0.00702,0.00041,0.09001),(0.00095,0.01093,0.00095,0.08807),(0.00268,0.01685,0.00268,0.06912)} {(0.00001,0.00000,0.94009,0.00000),(0.00005,0.00001,0.82015,0.00001),(0.00014,0.00002,0.69998,0.00002),(0.00028,0.00005,0.57945,0.00005),(0.00048,0.00008,0.45831,0.00008),(0.00076,0.00014,0.33615,0.00014),(0.00112,0.00021,0.21197,0.00021),(0.00158,0.00035,0.08228,0.00035)} {(0.00001,0.95978,0.00001,0.00008),(0.00013,0.87744,0.00013,0.00083),(0.00041,0.79208,0.00041,0.00257),(0.00090,0.70284,0.00090,0.00565),(0.00174,0.60839,0.00174,0.01063),(0.00316,0.50631,0.00316,0.01849),(0.00580,0.39132,0.00580,0.03118),(0.01272,0.24510,0.01272,0.05443)} {(0.00125,0.00001,0.00001,0.00373),(0.00365,0.00012,0.00011,0.01069),(0.00589,0.00035,0.00033,0.01689),(0.00796,0.00074,0.00069,0.02217),(0.00985,0.00134,0.00121,0.02627),(0.01151,0.00225,0.00197,0.02875),(0.01293,0.00365,0.00312,0.02875),(0.01406,0.00624,0.00537,0.02355)} {(0.00314,0.00000,0.00478,0.00000),(0.00925,0.00002,0.01446,0.00002),(0.01505,0.00008,0.02426,0.00008),(0.02045,0.00017,0.03403,0.00017),(0.02529,0.00032,0.04353,0.00032),(0.02923,0.00056,0.05221,0.00056),(0.03155,0.00101,0.05869,0.00101),(0.02950,0.00208,0.05694,0.00208)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00506,0.00191,0.00003,0.00002),(0.01510,0.00576,0.00025,0.00024),(0.02497,0.00967,0.00079,0.00072),(0.03458,0.01367,0.00175,0.00156),(0.04377,0.01779,0.00336,0.00288),(0.05219,0.02210,0.00599,0.00496),(0.05897,0.02676,0.01052,0.00840),(0.06056,0.03227,0.01997,0.01564)} {(0.00000,0.00002,0.00000,0.93802),(0.00003,0.00019,0.00003,0.81492),(0.00009,0.00056,0.00009,0.69296),(0.00019,0.00116,0.00019,0.57214),(0.00035,0.00204,0.00035,0.45237),(0.00059,0.00329,0.00059,0.33344),(0.00097,0.00507,0.00097,0.21457),(0.00184,0.00781,0.00184,0.09218)} {(0.00000,0.00002,0.00000,0.93802),(0.00003,0.00019,0.00003,0.81492),(0.00009,0.00056,0.00009,0.69296),(0.00019,0.00116,0.00019,0.57214),(0.00035,0.00204,0.00035,0.45237),(0.00059,0.00329,0.00059,0.33344),(0.00097,0.00507,0.00097,0.21457),(0.00184,0.00781,0.00184,0.09218)} {(0.00000,0.00127,0.00003,0.00000),(0.00000,0.00379,0.00025,0.00001),(0.00002,0.00630,0.00074,0.00006),(0.00008,0.00880,0.00155,0.00019),(0.00021,0.01127,0.00276,0.00048),(0.00051,0.01372,0.00452,0.00110),(0.00120,0.01610,0.00707,0.00243),(0.00336,0.01828,0.01104,0.00606)} {(0.00000,0.00002,0.00000,0.93802),(0.00003,0.00019,0.00003,0.81492),(0.00009,0.00056,0.00009,0.69296),(0.00019,0.00116,0.00019,0.57214),(0.00035,0.00204,0.00035,0.45237),(0.00059,0.00329,0.00059,0.33344),(0.00097,0.00507,0.00097,0.21457),(0.00184,0.00781,0.00184,0.09218)} {(0.00507,0.00001,0.00000,0.00000),(0.01520,0.00015,0.00003,0.00001),(0.02528,0.00044,0.00013,0.00006),(0.03527,0.00096,0.00043,0.00018),(0.04508,0.00180,0.00112,0.00047),(0.05450,0.00315,0.00257,0.00112),(0.06299,0.00546,0.00578,0.00262),(0.06797,0.01062,0.01475,0.00727)} {(0.00001,0.00004,0.00000,0.00005),(0.00013,0.00040,0.00001,0.00046),(0.00039,0.00118,0.00004,0.00133),(0.00086,0.00248,0.00012,0.00273),(0.00160,0.00444,0.00032,0.00476),(0.00277,0.00732,0.00076,0.00759),(0.00474,0.01161,0.00180,0.01153),(0.00889,0.01876,0.00505,0.01748)} {(0.00000,0.00002,0.00000,0.93802),(0.00003,0.00019,0.00003,0.81492),(0.00009,0.00056,0.00009,0.69296),(0.00019,0.00116,0.00019,0.57214),(0.00035,0.00204,0.00035,0.45237),(0.00059,0.00329,0.00059,0.33344),(0.00097,0.00507,0.00097,0.21457),(0.00184,0.00781,0.00184,0.09218)} ] +[3] CLV 7: [ {(0.00003,0.97682,0.00003,0.00017),(0.00027,0.92808,0.00027,0.00162),(0.00086,0.87547,0.00086,0.00492),(0.00194,0.81783,0.00194,0.01065),(0.00381,0.75324,0.00381,0.01980),(0.00707,0.67822,0.00707,0.03415),(0.01326,0.58486,0.01326,0.05768),(0.02960,0.44418,0.02960,0.10429)} {(0.00001,0.00000,0.96531,0.00000),(0.00010,0.00002,0.89291,0.00002),(0.00031,0.00005,0.81568,0.00005),(0.00068,0.00012,0.73228,0.00012),(0.00127,0.00024,0.64058,0.00024),(0.00222,0.00044,0.53680,0.00044),(0.00379,0.00083,0.41275,0.00083),(0.00702,0.00185,0.24056,0.00185)} {(0.00257,0.00003,0.00003,0.00383),(0.00796,0.00025,0.00025,0.01167),(0.01374,0.00077,0.00077,0.01977),(0.02000,0.00171,0.00172,0.02818),(0.02691,0.00326,0.00330,0.03694),(0.03475,0.00583,0.00594,0.04610),(0.04409,0.01037,0.01064,0.05568),(0.05662,0.02084,0.02163,0.06517)} {(0.00003,0.97682,0.00003,0.00017),(0.00027,0.92808,0.00027,0.00162),(0.00086,0.87547,0.00086,0.00492),(0.00194,0.81783,0.00194,0.01065),(0.00381,0.75324,0.00381,0.01980),(0.00707,0.67822,0.00707,0.03415),(0.01326,0.58486,0.01326,0.05768),(0.02960,0.44418,0.02960,0.10429)} {(0.00001,0.00004,0.00001,0.96411),(0.00007,0.00041,0.00007,0.88969),(0.00021,0.00123,0.00021,0.81109),(0.00049,0.00266,0.00049,0.72715),(0.00095,0.00495,0.00095,0.63606),(0.00177,0.00854,0.00177,0.53457),(0.00332,0.01442,0.00332,0.41562),(0.00740,0.02607,0.00740,0.25502)} {(0.00001,0.00004,0.00001,0.96411),(0.00007,0.00041,0.00007,0.88969),(0.00021,0.00123,0.00021,0.81109),(0.00049,0.00266,0.00049,0.72715),(0.00095,0.00495,0.00095,0.63606),(0.00177,0.00854,0.00177,0.53457),(0.00332,0.01442,0.00332,0.41562),(0.00740,0.02607,0.00740,0.25502)} {(0.00001,0.00000,0.96531,0.00000),(0.00010,0.00002,0.89291,0.00002),(0.00031,0.00005,0.81568,0.00005),(0.00068,0.00012,0.73228,0.00012),(0.00127,0.00024,0.64058,0.00024),(0.00222,0.00044,0.53680,0.00044),(0.00379,0.00083,0.41275,0.00083),(0.00702,0.00185,0.24056,0.00185)} {(0.00003,0.97682,0.00003,0.00017),(0.00027,0.92808,0.00027,0.00162),(0.00086,0.87547,0.00086,0.00492),(0.00194,0.81783,0.00194,0.01065),(0.00381,0.75324,0.00381,0.01980),(0.00707,0.67822,0.00707,0.03415),(0.01326,0.58486,0.01326,0.05768),(0.02960,0.44418,0.02960,0.10429)} {(0.00514,0.00386,0.00005,0.00005),(0.01592,0.01192,0.00050,0.00050),(0.02747,0.02054,0.00155,0.00154),(0.04000,0.02988,0.00344,0.00341),(0.05383,0.04019,0.00661,0.00652),(0.06951,0.05192,0.01187,0.01165),(0.08817,0.06605,0.02128,0.02074),(0.11323,0.08600,0.04326,0.04167)} {(0.97805,0.00002,0.00009,0.00002),(0.93152,0.00015,0.00092,0.00015),(0.88068,0.00048,0.00280,0.00048),(0.82419,0.00109,0.00611,0.00109),(0.75987,0.00214,0.01145,0.00214),(0.68364,0.00397,0.01995,0.00397),(0.58624,0.00746,0.03415,0.00746),(0.43310,0.01665,0.06322,0.01665)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.97805,0.00002,0.00009,0.00002),(0.93152,0.00015,0.00092,0.00015),(0.88068,0.00048,0.00280,0.00048),(0.82419,0.00109,0.00611,0.00109),(0.75987,0.00214,0.01145,0.00214),(0.68364,0.00397,0.01995,0.00397),(0.58624,0.00746,0.03415,0.00746),(0.43310,0.01665,0.06322,0.01665)} {(0.00001,0.00004,0.00001,0.96411),(0.00007,0.00041,0.00007,0.88969),(0.00021,0.00123,0.00021,0.81109),(0.00049,0.00266,0.00049,0.72715),(0.00095,0.00495,0.00095,0.63606),(0.00177,0.00854,0.00177,0.53457),(0.00332,0.01442,0.00332,0.41562),(0.00740,0.02607,0.00740,0.25502)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00001,0.00638,0.00001,0.01267),(0.00014,0.01940,0.00014,0.03798),(0.00043,0.03281,0.00043,0.06315),(0.00097,0.04667,0.00097,0.08801),(0.00191,0.06106,0.00191,0.11223),(0.00353,0.07609,0.00353,0.13511),(0.00663,0.09183,0.00663,0.15483),(0.01480,0.10762,0.01480,0.16309)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.97805,0.00002,0.00009,0.00002),(0.93152,0.00015,0.00092,0.00015),(0.88068,0.00048,0.00280,0.00048),(0.82419,0.00109,0.00611,0.00109),(0.75987,0.00214,0.01145,0.00214),(0.68364,0.00397,0.01995,0.00397),(0.58624,0.00746,0.03415,0.00746),(0.43310,0.01665,0.06322,0.01665)} {(0.97805,0.00002,0.00009,0.00002),(0.93152,0.00015,0.00092,0.00015),(0.88068,0.00048,0.00280,0.00048),(0.82419,0.00109,0.00611,0.00109),(0.75987,0.00214,0.01145,0.00214),(0.68364,0.00397,0.01995,0.00397),(0.58624,0.00746,0.03415,0.00746),(0.43310,0.01665,0.06322,0.01665)} {(0.00001,0.00000,0.96531,0.00000),(0.00010,0.00002,0.89291,0.00002),(0.00031,0.00005,0.81568,0.00005),(0.00068,0.00012,0.73228,0.00012),(0.00127,0.00024,0.64058,0.00024),(0.00222,0.00044,0.53680,0.00044),(0.00379,0.00083,0.41275,0.00083),(0.00702,0.00185,0.24056,0.00185)} ] + + + TEST alpha(ncats) = 1.00( 8), mode = MEDIAN 0.065280 0.208627 0.376074 0.577429 0.830101 1.169899 1.693147 3.079442 [3] P-matrix for branch length 0.100000 @@ -2396,7 +4792,183 @@ [3] CLV 7: [ {(0.00003,0.97755,0.00003,0.00016),(0.00025,0.93068,0.00025,0.00151),(0.00079,0.87991,0.00079,0.00457),(0.00180,0.82403,0.00180,0.00993),(0.00355,0.76103,0.00355,0.01854),(0.00661,0.68718,0.00661,0.03222),(0.01256,0.59356,0.01256,0.05522),(0.03241,0.42729,0.03241,0.11063)} {(0.00001,0.00000,0.96639,0.00000),(0.00009,0.00002,0.89676,0.00002),(0.00029,0.00005,0.82217,0.00005),(0.00063,0.00011,0.74119,0.00011),(0.00119,0.00022,0.65154,0.00022),(0.00209,0.00041,0.54903,0.00041),(0.00363,0.00079,0.42404,0.00079),(0.00747,0.00203,0.22147,0.00203)} {(0.00249,0.00002,0.00002,0.00371),(0.00767,0.00023,0.00023,0.01126),(0.01325,0.00071,0.00072,0.01910),(0.01933,0.00159,0.00160,0.02730),(0.02609,0.00304,0.00308,0.03592),(0.03383,0.00547,0.00557,0.04506),(0.04324,0.00988,0.01013,0.05488),(0.05792,0.02245,0.02335,0.06580)} {(0.00003,0.97755,0.00003,0.00016),(0.00025,0.93068,0.00025,0.00151),(0.00079,0.87991,0.00079,0.00457),(0.00180,0.82403,0.00180,0.00993),(0.00355,0.76103,0.00355,0.01854),(0.00661,0.68718,0.00661,0.03222),(0.01256,0.59356,0.01256,0.05522),(0.03241,0.42729,0.03241,0.11063)} {(0.00001,0.00004,0.00001,0.96522),(0.00006,0.00038,0.00006,0.89363),(0.00020,0.00114,0.00020,0.81766),(0.00045,0.00248,0.00045,0.73607),(0.00089,0.00464,0.00089,0.64688),(0.00165,0.00806,0.00165,0.54643),(0.00314,0.01380,0.00314,0.42633),(0.00810,0.02766,0.00810,0.23753)} {(0.00001,0.00004,0.00001,0.96522),(0.00006,0.00038,0.00006,0.89363),(0.00020,0.00114,0.00020,0.81766),(0.00045,0.00248,0.00045,0.73607),(0.00089,0.00464,0.00089,0.64688),(0.00165,0.00806,0.00165,0.54643),(0.00314,0.01380,0.00314,0.42633),(0.00810,0.02766,0.00810,0.23753)} {(0.00001,0.00000,0.96639,0.00000),(0.00009,0.00002,0.89676,0.00002),(0.00029,0.00005,0.82217,0.00005),(0.00063,0.00011,0.74119,0.00011),(0.00119,0.00022,0.65154,0.00022),(0.00209,0.00041,0.54903,0.00041),(0.00363,0.00079,0.42404,0.00079),(0.00747,0.00203,0.22147,0.00203)} {(0.00003,0.97755,0.00003,0.00016),(0.00025,0.93068,0.00025,0.00151),(0.00079,0.87991,0.00079,0.00457),(0.00180,0.82403,0.00180,0.00993),(0.00355,0.76103,0.00355,0.01854),(0.00661,0.68718,0.00661,0.03222),(0.01256,0.59356,0.01256,0.05522),(0.03241,0.42729,0.03241,0.11063)} {(0.00498,0.00374,0.00005,0.00005),(0.01535,0.01149,0.00046,0.00046),(0.02650,0.01982,0.00144,0.00143),(0.03866,0.02888,0.00320,0.00317),(0.05217,0.03896,0.00616,0.00608),(0.06766,0.05054,0.01114,0.01094),(0.08648,0.06476,0.02025,0.01975),(0.11585,0.08826,0.04669,0.04491)} {(0.97874,0.00001,0.00009,0.00001),(0.93402,0.00014,0.00085,0.00014),(0.88500,0.00045,0.00260,0.00045),(0.83031,0.00101,0.00569,0.00101),(0.76769,0.00199,0.01071,0.00199),(0.69284,0.00372,0.01880,0.00372),(0.59545,0.00707,0.03265,0.00707),(0.41410,0.01823,0.06727,0.01823)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.97874,0.00001,0.00009,0.00001),(0.93402,0.00014,0.00085,0.00014),(0.88500,0.00045,0.00260,0.00045),(0.83031,0.00101,0.00569,0.00101),(0.76769,0.00199,0.01071,0.00199),(0.69284,0.00372,0.01880,0.00372),(0.59545,0.00707,0.03265,0.00707),(0.41410,0.01823,0.06727,0.01823)} {(0.00001,0.00004,0.00001,0.96522),(0.00006,0.00038,0.00006,0.89363),(0.00020,0.00114,0.00020,0.81766),(0.00045,0.00248,0.00045,0.73607),(0.00089,0.00464,0.00089,0.64688),(0.00165,0.00806,0.00165,0.54643),(0.00314,0.01380,0.00314,0.42633),(0.00810,0.02766,0.00810,0.23753)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00001,0.00618,0.00001,0.01229),(0.00013,0.01872,0.00013,0.03668),(0.00040,0.03170,0.00040,0.06112),(0.00090,0.04522,0.00090,0.08548),(0.00177,0.05939,0.00177,0.10952),(0.00330,0.07440,0.00330,0.13269),(0.00628,0.09052,0.00628,0.15343),(0.01620,0.10871,0.01620,0.16210)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.97874,0.00001,0.00009,0.00001),(0.93402,0.00014,0.00085,0.00014),(0.88500,0.00045,0.00260,0.00045),(0.83031,0.00101,0.00569,0.00101),(0.76769,0.00199,0.01071,0.00199),(0.69284,0.00372,0.01880,0.00372),(0.59545,0.00707,0.03265,0.00707),(0.41410,0.01823,0.06727,0.01823)} {(0.97874,0.00001,0.00009,0.00001),(0.93402,0.00014,0.00085,0.00014),(0.88500,0.00045,0.00260,0.00045),(0.83031,0.00101,0.00569,0.00101),(0.76769,0.00199,0.01071,0.00199),(0.69284,0.00372,0.01880,0.00372),(0.59545,0.00707,0.03265,0.00707),(0.41410,0.01823,0.06727,0.01823)} {(0.00001,0.00000,0.96639,0.00000),(0.00009,0.00002,0.89676,0.00002),(0.00029,0.00005,0.82217,0.00005),(0.00063,0.00011,0.74119,0.00011),(0.00119,0.00022,0.65154,0.00022),(0.00209,0.00041,0.54903,0.00041),(0.00363,0.00079,0.42404,0.00079),(0.00747,0.00203,0.22147,0.00203)} ] - TEST alpha(ncats) = 1.50( 8) + TEST alpha(ncats) = 1.50( 8), mode = MEAN + +0.141984 0.327635 0.507645 0.703722 0.933278 1.224781 1.647349 2.513605 +[4] P-matrix for branch length 0.100000 ++0.9884 +0.0055 +0.0034 +0.0027 ++0.0041 +0.9877 +0.0014 +0.0068 ++0.0102 +0.0055 +0.9816 +0.0027 ++0.0041 +0.0136 +0.0014 +0.9809 + ++0.9735 +0.0125 +0.0077 +0.0063 ++0.0094 +0.9721 +0.0031 +0.0154 ++0.0231 +0.0125 +0.9581 +0.0063 ++0.0094 +0.0307 +0.0031 +0.9567 + ++0.9594 +0.0192 +0.0117 +0.0096 ++0.0144 +0.9574 +0.0048 +0.0234 ++0.0352 +0.0192 +0.9359 +0.0096 ++0.0144 +0.0468 +0.0048 +0.9340 + ++0.9444 +0.0264 +0.0160 +0.0132 ++0.0198 +0.9418 +0.0066 +0.0318 ++0.0479 +0.0264 +0.9124 +0.0132 ++0.0198 +0.0635 +0.0066 +0.9100 + ++0.9273 +0.0347 +0.0207 +0.0173 ++0.0260 +0.9242 +0.0087 +0.0412 ++0.0622 +0.0347 +0.8858 +0.0173 ++0.0260 +0.0823 +0.0087 +0.8830 + ++0.9062 +0.0448 +0.0265 +0.0224 ++0.0336 +0.9027 +0.0112 +0.0525 ++0.0795 +0.0448 +0.8532 +0.0224 ++0.0336 +0.1049 +0.0112 +0.8502 + ++0.8770 +0.0591 +0.0343 +0.0296 ++0.0443 +0.8732 +0.0148 +0.0676 ++0.1028 +0.0591 +0.8085 +0.0296 ++0.0443 +0.1353 +0.0148 +0.8056 + ++0.8217 +0.0866 +0.0483 +0.0433 ++0.0650 +0.8186 +0.0217 +0.0948 ++0.1450 +0.0866 +0.7251 +0.0433 ++0.0650 +0.1896 +0.0217 +0.7238 + + +[4] P-matrix for branch length 0.200000 ++0.9770 +0.0109 +0.0067 +0.0054 ++0.0082 +0.9757 +0.0027 +0.0134 ++0.0201 +0.0109 +0.9636 +0.0054 ++0.0082 +0.0268 +0.0027 +0.9624 + ++0.9481 +0.0247 +0.0149 +0.0123 ++0.0185 +0.9456 +0.0062 +0.0297 ++0.0448 +0.0247 +0.9182 +0.0123 ++0.0185 +0.0595 +0.0062 +0.9159 + ++0.9213 +0.0375 +0.0224 +0.0188 ++0.0282 +0.9180 +0.0094 +0.0444 ++0.0672 +0.0375 +0.8765 +0.0188 ++0.0282 +0.0888 +0.0094 +0.8736 + ++0.8934 +0.0511 +0.0299 +0.0255 ++0.0383 +0.8897 +0.0128 +0.0592 ++0.0898 +0.0511 +0.8336 +0.0255 ++0.0383 +0.1184 +0.0128 +0.8305 + ++0.8625 +0.0663 +0.0381 +0.0331 ++0.0497 +0.8587 +0.0166 +0.0750 ++0.1142 +0.0663 +0.7864 +0.0331 ++0.0497 +0.1500 +0.0166 +0.7837 + ++0.8256 +0.0847 +0.0474 +0.0423 ++0.0635 +0.8224 +0.0212 +0.0930 ++0.1421 +0.0847 +0.7309 +0.0423 ++0.0635 +0.1859 +0.0212 +0.7294 + ++0.7767 +0.1095 +0.0591 +0.0548 ++0.0821 +0.7752 +0.0274 +0.1153 ++0.1772 +0.1095 +0.6585 +0.0548 ++0.0821 +0.2306 +0.0274 +0.6599 + ++0.6907 +0.1545 +0.0776 +0.0772 ++0.1159 +0.6955 +0.0386 +0.1500 ++0.2327 +0.1545 +0.5356 +0.0772 ++0.1159 +0.2999 +0.0386 +0.5456 + + +[4] P-matrix for branch length 1.000000 ++0.8926 +0.0515 +0.0302 +0.0258 ++0.0386 +0.8889 +0.0129 +0.0596 ++0.0905 +0.0515 +0.8322 +0.0258 ++0.0386 +0.1193 +0.0129 +0.8292 + ++0.7777 +0.1090 +0.0588 +0.0545 ++0.0817 +0.7761 +0.0272 +0.1149 ++0.1765 +0.1090 +0.6600 +0.0545 ++0.0817 +0.2297 +0.0272 +0.6613 + ++0.6885 +0.1556 +0.0780 +0.0778 ++0.1167 +0.6936 +0.0389 +0.1508 ++0.2340 +0.1556 +0.5325 +0.0778 ++0.1167 +0.3016 +0.0389 +0.5428 + ++0.6110 +0.1980 +0.0920 +0.0990 ++0.1485 +0.6257 +0.0495 +0.1763 ++0.2759 +0.1980 +0.4271 +0.0990 ++0.1485 +0.3526 +0.0495 +0.4494 + ++0.5405 +0.2384 +0.1020 +0.1192 ++0.1788 +0.5674 +0.0596 +0.1943 ++0.3059 +0.2384 +0.3366 +0.1192 ++0.1788 +0.3886 +0.0596 +0.3731 + ++0.4743 +0.2782 +0.1084 +0.1391 ++0.2087 +0.5160 +0.0696 +0.2058 ++0.3251 +0.2782 +0.2576 +0.1391 ++0.2087 +0.4116 +0.0696 +0.3102 + ++0.4103 +0.3192 +0.1110 +0.1596 ++0.2394 +0.4698 +0.0798 +0.2110 ++0.3329 +0.3192 +0.1883 +0.1596 ++0.2394 +0.4219 +0.0798 +0.2589 + ++0.3442 +0.3651 +0.1080 +0.1826 ++0.2739 +0.4265 +0.0913 +0.2084 ++0.3241 +0.3651 +0.1282 +0.1826 ++0.2739 +0.4168 +0.0913 +0.2181 + + +[4] P-matrix for branch length 1.000000 ++0.8926 +0.0515 +0.0302 +0.0258 ++0.0386 +0.8889 +0.0129 +0.0596 ++0.0905 +0.0515 +0.8322 +0.0258 ++0.0386 +0.1193 +0.0129 +0.8292 + ++0.7777 +0.1090 +0.0588 +0.0545 ++0.0817 +0.7761 +0.0272 +0.1149 ++0.1765 +0.1090 +0.6600 +0.0545 ++0.0817 +0.2297 +0.0272 +0.6613 + ++0.6885 +0.1556 +0.0780 +0.0778 ++0.1167 +0.6936 +0.0389 +0.1508 ++0.2340 +0.1556 +0.5325 +0.0778 ++0.1167 +0.3016 +0.0389 +0.5428 + ++0.6110 +0.1980 +0.0920 +0.0990 ++0.1485 +0.6257 +0.0495 +0.1763 ++0.2759 +0.1980 +0.4271 +0.0990 ++0.1485 +0.3526 +0.0495 +0.4494 + ++0.5405 +0.2384 +0.1020 +0.1192 ++0.1788 +0.5674 +0.0596 +0.1943 ++0.3059 +0.2384 +0.3366 +0.1192 ++0.1788 +0.3886 +0.0596 +0.3731 + ++0.4743 +0.2782 +0.1084 +0.1391 ++0.2087 +0.5160 +0.0696 +0.2058 ++0.3251 +0.2782 +0.2576 +0.1391 ++0.2087 +0.4116 +0.0696 +0.3102 + ++0.4103 +0.3192 +0.1110 +0.1596 ++0.2394 +0.4698 +0.0798 +0.2110 ++0.3329 +0.3192 +0.1883 +0.1596 ++0.2394 +0.4219 +0.0798 +0.2589 + ++0.3442 +0.3651 +0.1080 +0.1826 ++0.2739 +0.4265 +0.0913 +0.2084 ++0.3241 +0.3651 +0.1282 +0.1826 ++0.2739 +0.4168 +0.0913 +0.2181 + + +[4] CLV 5: [ {(0.01069,0.02102,0.00028,0.02598),(0.02368,0.04560,0.00141,0.05556),(0.03530,0.06663,0.00323,0.08011),(0.04695,0.08675,0.00589,0.10286),(0.05938,0.10710,0.00977,0.12501),(0.07348,0.12867,0.01562,0.14742),(0.09104,0.15305,0.02540,0.17112),(0.11863,0.18490,0.04788,0.19840)} {(0.95448,0.00007,0.00041,0.00007),(0.89883,0.00034,0.00201,0.00034),(0.84876,0.00079,0.00451,0.00079),(0.79822,0.00147,0.00807,0.00147),(0.74389,0.00247,0.01304,0.00247),(0.68167,0.00403,0.02020,0.00403),(0.60320,0.00674,0.03142,0.00674),(0.47708,0.01342,0.05416,0.01342)} {(0.01063,0.00796,0.00022,0.00022),(0.02337,0.01749,0.00111,0.00110),(0.03459,0.02585,0.00252,0.00250),(0.04564,0.03409,0.00459,0.00454),(0.05718,0.04270,0.00757,0.00746),(0.06990,0.05222,0.01203,0.01181),(0.08505,0.06366,0.01941,0.01894),(0.10670,0.08059,0.03595,0.03475)} {(0.00012,0.95206,0.00012,0.00072),(0.00061,0.89418,0.00061,0.00354),(0.00141,0.84279,0.00141,0.00789),(0.00261,0.79160,0.00261,0.01401),(0.00440,0.73737,0.00440,0.02250),(0.00717,0.67630,0.00717,0.03457),(0.01199,0.60092,0.01199,0.05318),(0.02386,0.48379,0.02386,0.08997)} {(0.00531,0.00011,0.00011,0.00785),(0.01169,0.00055,0.00055,0.01694),(0.01730,0.00125,0.00126,0.02460),(0.02282,0.00227,0.00229,0.03182),(0.02859,0.00373,0.00379,0.03897),(0.03495,0.00590,0.00602,0.04632),(0.04252,0.00947,0.00970,0.05419),(0.05335,0.01738,0.01798,0.06321)} {(0.00006,0.01306,0.00006,0.02576),(0.00030,0.02812,0.00030,0.05446),(0.00070,0.04077,0.00070,0.07760),(0.00130,0.05266,0.00130,0.09832),(0.00220,0.06440,0.00220,0.11755),(0.00358,0.07645,0.00358,0.13562),(0.00600,0.08939,0.00600,0.15218),(0.01193,0.10431,0.01193,0.16364)} {(0.00005,0.00001,0.92844,0.00001),(0.00022,0.00004,0.84303,0.00004),(0.00050,0.00009,0.76823,0.00009),(0.00090,0.00016,0.69481,0.00016),(0.00145,0.00027,0.61837,0.00027),(0.00224,0.00045,0.53419,0.00045),(0.00349,0.00075,0.43362,0.00075),(0.00602,0.00149,0.28682,0.00149)} {(0.00012,0.95206,0.00012,0.00072),(0.00061,0.89418,0.00061,0.00354),(0.00141,0.84279,0.00141,0.00789),(0.00261,0.79160,0.00261,0.01401),(0.00440,0.73737,0.00440,0.02250),(0.00717,0.67630,0.00717,0.03457),(0.01199,0.60092,0.01199,0.05318),(0.02386,0.48379,0.02386,0.08997)} {(0.00003,0.00018,0.00003,0.92612),(0.00015,0.00088,0.00015,0.83883),(0.00035,0.00197,0.00035,0.76321),(0.00065,0.00350,0.00065,0.68978),(0.00110,0.00562,0.00110,0.61419),(0.00179,0.00864,0.00179,0.53204),(0.00300,0.01330,0.00300,0.43544),(0.00597,0.02249,0.00597,0.29765)} {(0.95448,0.00007,0.00041,0.00007),(0.89883,0.00034,0.00201,0.00034),(0.84876,0.00079,0.00451,0.00079),(0.79822,0.00147,0.00807,0.00147),(0.74389,0.00247,0.01304,0.00247),(0.68167,0.00403,0.02020,0.00403),(0.60320,0.00674,0.03142,0.00674),(0.47708,0.01342,0.05416,0.01342)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.95448,0.00007,0.00041,0.00007),(0.89883,0.00034,0.00201,0.00034),(0.84876,0.00079,0.00451,0.00079),(0.79822,0.00147,0.00807,0.00147),(0.74389,0.00247,0.01304,0.00247),(0.68167,0.00403,0.02020,0.00403),(0.60320,0.00674,0.03142,0.00674),(0.47708,0.01342,0.05416,0.01342)} {(0.00003,0.00018,0.00003,0.92612),(0.00015,0.00088,0.00015,0.83883),(0.00035,0.00197,0.00035,0.76321),(0.00065,0.00350,0.00065,0.68978),(0.00110,0.00562,0.00110,0.61419),(0.00179,0.00864,0.00179,0.53204),(0.00300,0.01330,0.00300,0.43544),(0.00597,0.02249,0.00597,0.29765)} {(0.00003,0.00018,0.00003,0.92612),(0.00015,0.00088,0.00015,0.83883),(0.00035,0.00197,0.00035,0.76321),(0.00065,0.00350,0.00065,0.68978),(0.00110,0.00562,0.00110,0.61419),(0.00179,0.00864,0.00179,0.53204),(0.00300,0.01330,0.00300,0.43544),(0.00597,0.02249,0.00597,0.29765)} {(0.00007,0.00265,0.01048,0.00007),(0.00037,0.00583,0.02264,0.00037),(0.00084,0.00862,0.03291,0.00083),(0.00153,0.01136,0.04258,0.00151),(0.00252,0.01423,0.05214,0.00249),(0.00401,0.01741,0.06188,0.00394),(0.00647,0.02122,0.07211,0.00631),(0.01198,0.02686,0.08273,0.01158)} {(0.00003,0.00018,0.00003,0.92612),(0.00015,0.00088,0.00015,0.83883),(0.00035,0.00197,0.00035,0.76321),(0.00065,0.00350,0.00065,0.68978),(0.00110,0.00562,0.00110,0.61419),(0.00179,0.00864,0.00179,0.53204),(0.00300,0.01330,0.00300,0.43544),(0.00597,0.02249,0.00597,0.29765)} {(0.01063,0.00796,0.00022,0.00022),(0.02337,0.01749,0.00111,0.00110),(0.03459,0.02585,0.00252,0.00250),(0.04564,0.03409,0.00459,0.00454),(0.05718,0.04270,0.00757,0.00746),(0.06990,0.05222,0.01203,0.01181),(0.08505,0.06366,0.01941,0.01894),(0.10670,0.08059,0.03595,0.03475)} {(0.00531,0.00011,0.00011,0.00785),(0.01169,0.00055,0.00055,0.01694),(0.01730,0.00125,0.00126,0.02460),(0.02282,0.00227,0.00229,0.03182),(0.02859,0.00373,0.00379,0.03897),(0.03495,0.00590,0.00602,0.04632),(0.04252,0.00947,0.00970,0.05419),(0.05335,0.01738,0.01798,0.06321)} {(0.00003,0.00018,0.00003,0.92612),(0.00015,0.00088,0.00015,0.83883),(0.00035,0.00197,0.00035,0.76321),(0.00065,0.00350,0.00065,0.68978),(0.00110,0.00562,0.00110,0.61419),(0.00179,0.00864,0.00179,0.53204),(0.00300,0.01330,0.00300,0.43544),(0.00597,0.02249,0.00597,0.29765)} ] +[4] CLV 6: [ {(0.01050,0.00017,0.00001,0.00021),(0.02274,0.00084,0.00013,0.00101),(0.03312,0.00186,0.00042,0.00221),(0.04296,0.00329,0.00101,0.00383),(0.05273,0.00526,0.00208,0.00601),(0.06282,0.00803,0.00401,0.00898),(0.07365,0.01229,0.00780,0.01338),(0.08593,0.02073,0.01781,0.02171)} {(0.00633,0.00001,0.00976,0.00001),(0.01308,0.00005,0.02086,0.00005),(0.01824,0.00012,0.02993,0.00012),(0.02257,0.00022,0.03808,0.00022),(0.02627,0.00036,0.04559,0.00036),(0.02930,0.00057,0.05240,0.00057),(0.03136,0.00092,0.05796,0.00092),(0.03075,0.00172,0.05901,0.00172)} {(0.01055,0.00791,0.00037,0.00037),(0.02299,0.01724,0.00183,0.00181),(0.03374,0.02532,0.00410,0.00406),(0.04414,0.03319,0.00734,0.00723),(0.05479,0.04132,0.01187,0.01165),(0.06627,0.05024,0.01843,0.01800),(0.07958,0.06093,0.02876,0.02793),(0.09790,0.07697,0.05002,0.04814)} {(0.00006,0.91757,0.00006,0.00037),(0.00029,0.82202,0.00029,0.00184),(0.00066,0.74093,0.00066,0.00416),(0.00121,0.66378,0.00121,0.00747),(0.00200,0.58610,0.00200,0.01211),(0.00320,0.50381,0.00320,0.01872),(0.00526,0.41011,0.00526,0.02879),(0.01028,0.28282,0.01028,0.04767)} {(0.00527,0.00018,0.00018,0.00772),(0.01149,0.00091,0.00091,0.01633),(0.01687,0.00203,0.00205,0.02329),(0.02207,0.00361,0.00367,0.02957),(0.02739,0.00583,0.00594,0.03549),(0.03314,0.00900,0.00921,0.04124),(0.03979,0.01396,0.01438,0.04697),(0.04895,0.02407,0.02501,0.05290)} {(0.00000,0.00018,0.00000,0.02449),(0.00001,0.00084,0.00001,0.04852),(0.00004,0.00182,0.00004,0.06500),(0.00010,0.00312,0.00010,0.07712),(0.00021,0.00483,0.00021,0.08556),(0.00042,0.00709,0.00042,0.09007),(0.00083,0.01023,0.00083,0.08911),(0.00205,0.01529,0.00205,0.07597)} {(0.00002,0.00000,0.87813,0.00000),(0.00010,0.00002,0.74161,0.00002),(0.00021,0.00004,0.63022,0.00004),(0.00036,0.00006,0.52849,0.00006),(0.00054,0.00009,0.43081,0.00009),(0.00077,0.00014,0.33329,0.00014),(0.00106,0.00020,0.23114,0.00020),(0.00147,0.00031,0.11195,0.00031)} {(0.00006,0.91757,0.00006,0.00037),(0.00029,0.82202,0.00029,0.00184),(0.00066,0.74093,0.00066,0.00416),(0.00121,0.66378,0.00121,0.00747),(0.00200,0.58610,0.00200,0.01211),(0.00320,0.50381,0.00320,0.01872),(0.00526,0.41011,0.00526,0.02879),(0.01028,0.28282,0.01028,0.04767)} {(0.00251,0.00005,0.00005,0.00741),(0.00513,0.00025,0.00024,0.01484),(0.00711,0.00056,0.00052,0.02008),(0.00878,0.00097,0.00088,0.02406),(0.01024,0.00152,0.00136,0.02699),(0.01155,0.00227,0.00199,0.02879),(0.01273,0.00339,0.00291,0.02897),(0.01383,0.00546,0.00466,0.02551)} 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{(0.01026,0.00389,0.00011,0.00011),(0.02157,0.00831,0.00056,0.00052),(0.03058,0.01198,0.00128,0.00116),(0.03852,0.01539,0.00233,0.00205),(0.04576,0.01875,0.00384,0.00327),(0.05237,0.02221,0.00607,0.00502),(0.05811,0.02601,0.00964,0.00774),(0.06123,0.03090,0.01702,0.01333)} {(0.00001,0.00009,0.00001,0.87427),(0.00007,0.00041,0.00007,0.73505),(0.00014,0.00088,0.00014,0.62284),(0.00025,0.00149,0.00025,0.52154),(0.00039,0.00229,0.00039,0.42543),(0.00059,0.00333,0.00059,0.33067),(0.00090,0.00476,0.00090,0.23278),(0.00155,0.00707,0.00155,0.12014)} {(0.00001,0.00009,0.00001,0.87427),(0.00007,0.00041,0.00007,0.73505),(0.00014,0.00088,0.00014,0.62284),(0.00025,0.00149,0.00025,0.52154),(0.00039,0.00229,0.00039,0.42543),(0.00059,0.00333,0.00059,0.33067),(0.00090,0.00476,0.00090,0.23278),(0.00155,0.00707,0.00155,0.12014)} {(0.00000,0.00257,0.00011,0.00000),(0.00002,0.00543,0.00054,0.00004),(0.00005,0.00775,0.00116,0.00012),(0.00012,0.00984,0.00201,0.00029),(0.00026,0.01183,0.00311,0.00058),(0.00052,0.01377,0.00457,0.00112),(0.00105,0.01574,0.00661,0.00215),(0.00258,0.01785,0.00997,0.00481)} {(0.00001,0.00009,0.00001,0.87427),(0.00007,0.00041,0.00007,0.73505),(0.00014,0.00088,0.00014,0.62284),(0.00025,0.00149,0.00025,0.52154),(0.00039,0.00229,0.00039,0.42543),(0.00059,0.00333,0.00059,0.33067),(0.00090,0.00476,0.00090,0.23278),(0.00155,0.00707,0.00155,0.12014)} {(0.01031,0.00006,0.00001,0.00000),(0.02180,0.00032,0.00008,0.00003),(0.03108,0.00071,0.00028,0.00011),(0.03944,0.00127,0.00066,0.00028),(0.04726,0.00205,0.00136,0.00058),(0.05472,0.00319,0.00262,0.00114),(0.06181,0.00500,0.00510,0.00229),(0.06762,0.00892,0.01164,0.00558)} {(0.00006,0.00018,0.00000,0.00021),(0.00028,0.00086,0.00002,0.00097),(0.00063,0.00186,0.00008,0.00207),(0.00113,0.00322,0.00019,0.00350),(0.00182,0.00500,0.00039,0.00532),(0.00281,0.00740,0.00078,0.00767),(0.00436,0.01083,0.00157,0.01083),(0.00756,0.01674,0.00386,0.01587)} {(0.00001,0.00009,0.00001,0.87427),(0.00007,0.00041,0.00007,0.73505),(0.00014,0.00088,0.00014,0.62284),(0.00025,0.00149,0.00025,0.52154),(0.00039,0.00229,0.00039,0.42543),(0.00059,0.00333,0.00059,0.33067),(0.00090,0.00476,0.00090,0.23278),(0.00155,0.00707,0.00155,0.12014)} ] +[4] CLV 7: [ {(0.00012,0.95206,0.00012,0.00072),(0.00061,0.89418,0.00061,0.00354),(0.00141,0.84279,0.00141,0.00789),(0.00261,0.79160,0.00261,0.01401),(0.00440,0.73737,0.00440,0.02250),(0.00717,0.67630,0.00717,0.03457),(0.01199,0.60092,0.01199,0.05318),(0.02386,0.48379,0.02386,0.08997)} {(0.00005,0.00001,0.92844,0.00001),(0.00022,0.00004,0.84303,0.00004),(0.00050,0.00009,0.76823,0.00009),(0.00090,0.00016,0.69481,0.00016),(0.00145,0.00027,0.61837,0.00027),(0.00224,0.00045,0.53419,0.00045),(0.00349,0.00075,0.43362,0.00075),(0.00602,0.00149,0.28682,0.00149)} {(0.00531,0.00011,0.00011,0.00785),(0.01169,0.00055,0.00055,0.01694),(0.01730,0.00125,0.00126,0.02460),(0.02282,0.00227,0.00229,0.03182),(0.02859,0.00373,0.00379,0.03897),(0.03495,0.00590,0.00602,0.04632),(0.04252,0.00947,0.00970,0.05419),(0.05335,0.01738,0.01798,0.06321)} {(0.00012,0.95206,0.00012,0.00072),(0.00061,0.89418,0.00061,0.00354),(0.00141,0.84279,0.00141,0.00789),(0.00261,0.79160,0.00261,0.01401),(0.00440,0.73737,0.00440,0.02250),(0.00717,0.67630,0.00717,0.03457),(0.01199,0.60092,0.01199,0.05318),(0.02386,0.48379,0.02386,0.08997)} {(0.00003,0.00018,0.00003,0.92612),(0.00015,0.00088,0.00015,0.83883),(0.00035,0.00197,0.00035,0.76321),(0.00065,0.00350,0.00065,0.68978),(0.00110,0.00562,0.00110,0.61419),(0.00179,0.00864,0.00179,0.53204),(0.00300,0.01330,0.00300,0.43544),(0.00597,0.02249,0.00597,0.29765)} {(0.00003,0.00018,0.00003,0.92612),(0.00015,0.00088,0.00015,0.83883),(0.00035,0.00197,0.00035,0.76321),(0.00065,0.00350,0.00065,0.68978),(0.00110,0.00562,0.00110,0.61419),(0.00179,0.00864,0.00179,0.53204),(0.00300,0.01330,0.00300,0.43544),(0.00597,0.02249,0.00597,0.29765)} {(0.00005,0.00001,0.92844,0.00001),(0.00022,0.00004,0.84303,0.00004),(0.00050,0.00009,0.76823,0.00009),(0.00090,0.00016,0.69481,0.00016),(0.00145,0.00027,0.61837,0.00027),(0.00224,0.00045,0.53419,0.00045),(0.00349,0.00075,0.43362,0.00075),(0.00602,0.00149,0.28682,0.00149)} {(0.00012,0.95206,0.00012,0.00072),(0.00061,0.89418,0.00061,0.00354),(0.00141,0.84279,0.00141,0.00789),(0.00261,0.79160,0.00261,0.01401),(0.00440,0.73737,0.00440,0.02250),(0.00717,0.67630,0.00717,0.03457),(0.01199,0.60092,0.01199,0.05318),(0.02386,0.48379,0.02386,0.08997)} {(0.01063,0.00796,0.00022,0.00022),(0.02337,0.01749,0.00111,0.00110),(0.03459,0.02585,0.00252,0.00250),(0.04564,0.03409,0.00459,0.00454),(0.05718,0.04270,0.00757,0.00746),(0.06990,0.05222,0.01203,0.01181),(0.08505,0.06366,0.01941,0.01894),(0.10670,0.08059,0.03595,0.03475)} {(0.95448,0.00007,0.00041,0.00007),(0.89883,0.00034,0.00201,0.00034),(0.84876,0.00079,0.00451,0.00079),(0.79822,0.00147,0.00807,0.00147),(0.74389,0.00247,0.01304,0.00247),(0.68167,0.00403,0.02020,0.00403),(0.60320,0.00674,0.03142,0.00674),(0.47708,0.01342,0.05416,0.01342)} 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{(0.00003,0.00018,0.00003,0.92612),(0.00015,0.00088,0.00015,0.83883),(0.00035,0.00197,0.00035,0.76321),(0.00065,0.00350,0.00065,0.68978),(0.00110,0.00562,0.00110,0.61419),(0.00179,0.00864,0.00179,0.53204),(0.00300,0.01330,0.00300,0.43544),(0.00597,0.02249,0.00597,0.29765)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00006,0.01306,0.00006,0.02576),(0.00030,0.02812,0.00030,0.05446),(0.00070,0.04077,0.00070,0.07760),(0.00130,0.05266,0.00130,0.09832),(0.00220,0.06440,0.00220,0.11755),(0.00358,0.07645,0.00358,0.13562),(0.00600,0.08939,0.00600,0.15218),(0.01193,0.10431,0.01193,0.16364)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.95448,0.00007,0.00041,0.00007),(0.89883,0.00034,0.00201,0.00034),(0.84876,0.00079,0.00451,0.00079),(0.79822,0.00147,0.00807,0.00147),(0.74389,0.00247,0.01304,0.00247),(0.68167,0.00403,0.02020,0.00403),(0.60320,0.00674,0.03142,0.00674),(0.47708,0.01342,0.05416,0.01342)} {(0.95448,0.00007,0.00041,0.00007),(0.89883,0.00034,0.00201,0.00034),(0.84876,0.00079,0.00451,0.00079),(0.79822,0.00147,0.00807,0.00147),(0.74389,0.00247,0.01304,0.00247),(0.68167,0.00403,0.02020,0.00403),(0.60320,0.00674,0.03142,0.00674),(0.47708,0.01342,0.05416,0.01342)} {(0.00005,0.00001,0.92844,0.00001),(0.00022,0.00004,0.84303,0.00004),(0.00050,0.00009,0.76823,0.00009),(0.00090,0.00016,0.69481,0.00016),(0.00145,0.00027,0.61837,0.00027),(0.00224,0.00045,0.53419,0.00045),(0.00349,0.00075,0.43362,0.00075),(0.00602,0.00149,0.28682,0.00149)} ] + + + TEST alpha(ncats) = 1.50( 8), mode = MEDIAN 0.132916 0.317729 0.493114 0.683999 0.907776 1.193067 1.612147 2.659252 [4] P-matrix for branch length 0.100000 @@ -2572,7 +5144,183 @@ [4] CLV 7: [ {(0.00010,0.95503,0.00010,0.00063),(0.00057,0.89714,0.00057,0.00334),(0.00133,0.84678,0.00133,0.00749),(0.00247,0.79654,0.00247,0.01334),(0.00418,0.74311,0.00418,0.02150),(0.00684,0.68255,0.00684,0.03321),(0.01156,0.60667,0.01156,0.05162),(0.02603,0.46797,0.02603,0.09559)} {(0.00004,0.00001,0.93284,0.00001),(0.00021,0.00004,0.84737,0.00004),(0.00048,0.00008,0.77400,0.00008),(0.00085,0.00015,0.70184,0.00015),(0.00138,0.00026,0.62639,0.00026),(0.00215,0.00043,0.54271,0.00043),(0.00339,0.00072,0.44115,0.00072),(0.00641,0.00163,0.26811,0.00163)} {(0.00499,0.00010,0.00010,0.00737),(0.01136,0.00052,0.00052,0.01648),(0.01686,0.00119,0.00120,0.02402),(0.02229,0.00216,0.00218,0.03115),(0.02799,0.00355,0.00361,0.03824),(0.03431,0.00565,0.00576,0.04560),(0.04196,0.00916,0.00938,0.05364),(0.05468,0.01870,0.01938,0.06407)} {(0.00010,0.95503,0.00010,0.00063),(0.00057,0.89714,0.00057,0.00334),(0.00133,0.84678,0.00133,0.00749),(0.00247,0.79654,0.00247,0.01334),(0.00418,0.74311,0.00418,0.02150),(0.00684,0.68255,0.00684,0.03321),(0.01156,0.60667,0.01156,0.05162),(0.02603,0.46797,0.02603,0.09559)} 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{(0.00010,0.95503,0.00010,0.00063),(0.00057,0.89714,0.00057,0.00334),(0.00133,0.84678,0.00133,0.00749),(0.00247,0.79654,0.00247,0.01334),(0.00418,0.74311,0.00418,0.02150),(0.00684,0.68255,0.00684,0.03321),(0.01156,0.60667,0.01156,0.05162),(0.02603,0.46797,0.02603,0.09559)} {(0.00997,0.00747,0.00019,0.00019),(0.02273,0.01700,0.00104,0.00104),(0.03373,0.02521,0.00239,0.00237),(0.04458,0.03330,0.00436,0.00431),(0.05597,0.04179,0.00721,0.00711),(0.06861,0.05125,0.01152,0.01131),(0.08392,0.06280,0.01877,0.01832),(0.10937,0.08277,0.03875,0.03741)} {(0.95731,0.00006,0.00036,0.00006),(0.90170,0.00032,0.00190,0.00032),(0.85267,0.00075,0.00428,0.00075),(0.80312,0.00139,0.00768,0.00139),(0.74968,0.00235,0.01245,0.00235),(0.68810,0.00385,0.01939,0.00385),(0.60926,0.00650,0.03047,0.00650),(0.45960,0.01464,0.05771,0.01464)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.95731,0.00006,0.00036,0.00006),(0.90170,0.00032,0.00190,0.00032),(0.85267,0.00075,0.00428,0.00075),(0.80312,0.00139,0.00768,0.00139),(0.74968,0.00235,0.01245,0.00235),(0.68810,0.00385,0.01939,0.00385),(0.60926,0.00650,0.03047,0.00650),(0.45960,0.01464,0.05771,0.01464)} {(0.00003,0.00016,0.00003,0.93065),(0.00014,0.00083,0.00014,0.84324),(0.00033,0.00187,0.00033,0.76901),(0.00062,0.00334,0.00062,0.69678),(0.00104,0.00538,0.00104,0.62208),(0.00171,0.00830,0.00171,0.54030),(0.00289,0.01291,0.00289,0.44261),(0.00651,0.02390,0.00651,0.28036)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00005,0.01227,0.00005,0.02422),(0.00029,0.02737,0.00029,0.05306),(0.00067,0.03982,0.00067,0.07589),(0.00124,0.05155,0.00124,0.09643),(0.00209,0.06320,0.00209,0.11565),(0.00342,0.07528,0.00342,0.13395),(0.00578,0.08848,0.00578,0.15115),(0.01301,0.10575,0.01301,0.16371)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.95731,0.00006,0.00036,0.00006),(0.90170,0.00032,0.00190,0.00032),(0.85267,0.00075,0.00428,0.00075),(0.80312,0.00139,0.00768,0.00139),(0.74968,0.00235,0.01245,0.00235),(0.68810,0.00385,0.01939,0.00385),(0.60926,0.00650,0.03047,0.00650),(0.45960,0.01464,0.05771,0.01464)} {(0.95731,0.00006,0.00036,0.00006),(0.90170,0.00032,0.00190,0.00032),(0.85267,0.00075,0.00428,0.00075),(0.80312,0.00139,0.00768,0.00139),(0.74968,0.00235,0.01245,0.00235),(0.68810,0.00385,0.01939,0.00385),(0.60926,0.00650,0.03047,0.00650),(0.45960,0.01464,0.05771,0.01464)} {(0.00004,0.00001,0.93284,0.00001),(0.00021,0.00004,0.84737,0.00004),(0.00048,0.00008,0.77400,0.00008),(0.00085,0.00015,0.70184,0.00015),(0.00138,0.00026,0.62639,0.00026),(0.00215,0.00043,0.54271,0.00043),(0.00339,0.00072,0.44115,0.00072),(0.00641,0.00163,0.26811,0.00163)} ] - TEST alpha(ncats) = 5.00( 8) + TEST alpha(ncats) = 5.00( 8), mode = MEAN + +0.424853 0.609160 0.746919 0.876688 1.013197 1.171615 1.382565 1.775003 +[5] P-matrix for branch length 0.100000 ++0.9658 +0.0162 +0.0099 +0.0081 ++0.0121 +0.9641 +0.0040 +0.0197 ++0.0297 +0.0162 +0.9460 +0.0081 ++0.0121 +0.0395 +0.0040 +0.9444 + ++0.9516 +0.0230 +0.0140 +0.0115 ++0.0172 +0.9493 +0.0057 +0.0278 ++0.0419 +0.0230 +0.9237 +0.0115 ++0.0172 +0.0555 +0.0057 +0.9215 + ++0.9411 +0.0280 +0.0169 +0.0140 ++0.0210 +0.9384 +0.0070 +0.0336 ++0.0507 +0.0280 +0.9073 +0.0140 ++0.0210 +0.0672 +0.0070 +0.9049 + ++0.9315 +0.0326 +0.0196 +0.0163 ++0.0245 +0.9285 +0.0082 +0.0389 ++0.0588 +0.0326 +0.8923 +0.0163 ++0.0245 +0.0778 +0.0082 +0.8896 + ++0.9214 +0.0375 +0.0224 +0.0187 ++0.0281 +0.9182 +0.0094 +0.0443 ++0.0671 +0.0375 +0.8767 +0.0187 ++0.0281 +0.0887 +0.0094 +0.8739 + ++0.9100 +0.0430 +0.0255 +0.0215 ++0.0323 +0.9065 +0.0108 +0.0505 ++0.0764 +0.0430 +0.8591 +0.0215 ++0.0323 +0.1009 +0.0108 +0.8561 + ++0.8952 +0.0502 +0.0295 +0.0251 ++0.0377 +0.8915 +0.0126 +0.0583 ++0.0884 +0.0502 +0.8362 +0.0251 ++0.0377 +0.1166 +0.0126 +0.8332 + ++0.8685 +0.0633 +0.0365 +0.0317 ++0.0475 +0.8647 +0.0158 +0.0720 ++0.1095 +0.0633 +0.7955 +0.0317 ++0.0475 +0.1439 +0.0158 +0.7927 + + +[5] P-matrix for branch length 0.200000 ++0.9335 +0.0317 +0.0190 +0.0158 ++0.0238 +0.9305 +0.0079 +0.0378 ++0.0571 +0.0317 +0.8954 +0.0158 ++0.0238 +0.0756 +0.0079 +0.8927 + ++0.9067 +0.0446 +0.0264 +0.0223 ++0.0335 +0.9032 +0.0112 +0.0522 ++0.0791 +0.0446 +0.8539 +0.0223 ++0.0335 +0.1044 +0.0112 +0.8509 + ++0.8875 +0.0540 +0.0315 +0.0270 ++0.0405 +0.8837 +0.0135 +0.0623 ++0.0946 +0.0540 +0.8244 +0.0270 ++0.0405 +0.1246 +0.0135 +0.8214 + ++0.8700 +0.0626 +0.0361 +0.0313 ++0.0470 +0.8661 +0.0157 +0.0712 ++0.1084 +0.0626 +0.7977 +0.0313 ++0.0470 +0.1425 +0.0157 +0.7949 + ++0.8521 +0.0714 +0.0407 +0.0357 ++0.0536 +0.8484 +0.0179 +0.0801 ++0.1222 +0.0714 +0.7707 +0.0357 ++0.0536 +0.1603 +0.0179 +0.7683 + ++0.8322 +0.0814 +0.0458 +0.0407 ++0.0610 +0.8288 +0.0203 +0.0899 ++0.1373 +0.0814 +0.7406 +0.0407 ++0.0610 +0.1797 +0.0203 +0.7389 + ++0.8068 +0.0942 +0.0520 +0.0471 ++0.0706 +0.8040 +0.0235 +0.1018 ++0.1559 +0.0942 +0.7028 +0.0471 ++0.0706 +0.2036 +0.0235 +0.7022 + ++0.7628 +0.1166 +0.0622 +0.0583 ++0.0875 +0.7621 +0.0292 +0.1213 ++0.1867 +0.1166 +0.6384 +0.0583 ++0.0875 +0.2426 +0.0292 +0.6408 + + +[5] P-matrix for branch length 1.000000 ++0.7271 +0.1352 +0.0701 +0.0676 ++0.1014 +0.7288 +0.0338 +0.1360 ++0.2103 +0.1352 +0.5870 +0.0676 ++0.1014 +0.2721 +0.0338 +0.5927 + ++0.6461 +0.1786 +0.0860 +0.0893 ++0.1339 +0.6560 +0.0446 +0.1654 ++0.2580 +0.1786 +0.4742 +0.0893 ++0.1339 +0.3309 +0.0446 +0.4905 + ++0.5963 +0.2063 +0.0943 +0.1032 ++0.1547 +0.6132 +0.0516 +0.1805 ++0.2829 +0.2063 +0.4077 +0.1032 ++0.1547 +0.3610 +0.0516 +0.4327 + ++0.5562 +0.2292 +0.1000 +0.1146 ++0.1719 +0.5800 +0.0573 +0.1908 ++0.3000 +0.2292 +0.3562 +0.1146 ++0.1719 +0.3815 +0.0573 +0.3892 + ++0.5201 +0.2504 +0.1043 +0.1252 ++0.1878 +0.5511 +0.0626 +0.1984 ++0.3128 +0.2504 +0.3115 +0.1252 ++0.1878 +0.3969 +0.0626 +0.3527 + ++0.4848 +0.2718 +0.1076 +0.1359 ++0.2038 +0.5239 +0.0679 +0.2044 ++0.3228 +0.2718 +0.2696 +0.1359 ++0.2038 +0.4087 +0.0679 +0.3195 + ++0.4467 +0.2955 +0.1100 +0.1478 ++0.2216 +0.4957 +0.0739 +0.2088 ++0.3300 +0.2955 +0.2268 +0.1478 ++0.2216 +0.4176 +0.0739 +0.2869 + ++0.3962 +0.3286 +0.1109 +0.1643 ++0.2465 +0.4602 +0.0822 +0.2112 ++0.3327 +0.3286 +0.1744 +0.1643 ++0.2465 +0.4224 +0.0822 +0.2490 + + +[5] P-matrix for branch length 1.000000 ++0.7271 +0.1352 +0.0701 +0.0676 ++0.1014 +0.7288 +0.0338 +0.1360 ++0.2103 +0.1352 +0.5870 +0.0676 ++0.1014 +0.2721 +0.0338 +0.5927 + ++0.6461 +0.1786 +0.0860 +0.0893 ++0.1339 +0.6560 +0.0446 +0.1654 ++0.2580 +0.1786 +0.4742 +0.0893 ++0.1339 +0.3309 +0.0446 +0.4905 + ++0.5963 +0.2063 +0.0943 +0.1032 ++0.1547 +0.6132 +0.0516 +0.1805 ++0.2829 +0.2063 +0.4077 +0.1032 ++0.1547 +0.3610 +0.0516 +0.4327 + ++0.5562 +0.2292 +0.1000 +0.1146 ++0.1719 +0.5800 +0.0573 +0.1908 ++0.3000 +0.2292 +0.3562 +0.1146 ++0.1719 +0.3815 +0.0573 +0.3892 + ++0.5201 +0.2504 +0.1043 +0.1252 ++0.1878 +0.5511 +0.0626 +0.1984 ++0.3128 +0.2504 +0.3115 +0.1252 ++0.1878 +0.3969 +0.0626 +0.3527 + ++0.4848 +0.2718 +0.1076 +0.1359 ++0.2038 +0.5239 +0.0679 +0.2044 ++0.3228 +0.2718 +0.2696 +0.1359 ++0.2038 +0.4087 +0.0679 +0.3195 + ++0.4467 +0.2955 +0.1100 +0.1478 ++0.2216 +0.4957 +0.0739 +0.2088 ++0.3300 +0.2955 +0.2268 +0.1478 ++0.2216 +0.4176 +0.0739 +0.2869 + ++0.3962 +0.3286 +0.1109 +0.1643 ++0.2465 +0.4602 +0.0822 +0.2112 ++0.3327 +0.3286 +0.1744 +0.1643 ++0.2465 +0.4224 +0.0822 +0.2490 + + +[5] CLV 5: [ {(0.03007,0.05728,0.00231,0.06929),(0.04145,0.07739,0.00453,0.09236),(0.04938,0.09083,0.00657,0.10737),(0.05643,0.10238,0.00875,0.11995),(0.06342,0.11346,0.01128,0.13174),(0.07104,0.12506,0.01448,0.14376),(0.08041,0.13863,0.01912,0.15734),(0.09576,0.15909,0.02857,0.17666)} {(0.87134,0.00056,0.00326,0.00056),(0.82209,0.00112,0.00626,0.00112),(0.78761,0.00164,0.00894,0.00164),(0.75682,0.00221,0.01175,0.00221),(0.72611,0.00287,0.01493,0.00287),(0.69249,0.00373,0.01884,0.00373),(0.65085,0.00499,0.02432,0.00499),(0.58192,0.00765,0.03487,0.00765)} {(0.02957,0.02211,0.00181,0.00180),(0.04046,0.03023,0.00353,0.00350),(0.04793,0.03579,0.00511,0.00505),(0.05447,0.04067,0.00679,0.00669),(0.06087,0.04546,0.00873,0.00859),(0.06773,0.05059,0.01117,0.01097),(0.07598,0.05679,0.01469,0.01438),(0.08896,0.06665,0.02178,0.02122)} {(0.00100,0.86588,0.00100,0.00572),(0.00199,0.81570,0.00199,0.01091),(0.00292,0.78095,0.00292,0.01552),(0.00392,0.75021,0.00392,0.02030),(0.00510,0.71980,0.00510,0.02570),(0.00662,0.68684,0.00662,0.03229),(0.00887,0.64647,0.00887,0.04144),(0.01360,0.58079,0.01360,0.05884)} {(0.01478,0.00090,0.00090,0.02121),(0.02023,0.00175,0.00177,0.02848),(0.02396,0.00252,0.00255,0.03327),(0.02723,0.00335,0.00339,0.03733),(0.03044,0.00429,0.00436,0.04116),(0.03386,0.00548,0.00559,0.04510),(0.03799,0.00719,0.00734,0.04960),(0.04448,0.01061,0.01089,0.05605)} {(0.00050,0.03517,0.00050,0.06749),(0.00100,0.04716,0.00100,0.08887),(0.00146,0.05504,0.00146,0.10232),(0.00196,0.06171,0.00196,0.11326),(0.00255,0.06800,0.00255,0.12315),(0.00331,0.07447,0.00331,0.13279),(0.00443,0.08184,0.00443,0.14296),(0.00680,0.09243,0.00680,0.15545)} {(0.00036,0.00006,0.80171,0.00006),(0.00070,0.00012,0.72923,0.00012),(0.00099,0.00018,0.67968,0.00018),(0.00131,0.00025,0.63633,0.00025),(0.00166,0.00032,0.59394,0.00032),(0.00209,0.00041,0.54856,0.00041),(0.00270,0.00055,0.49392,0.00055),(0.00387,0.00085,0.40749,0.00085)} {(0.00100,0.86588,0.00100,0.00572),(0.00199,0.81570,0.00199,0.01091),(0.00292,0.78095,0.00292,0.01552),(0.00392,0.75021,0.00392,0.02030),(0.00510,0.71980,0.00510,0.02570),(0.00662,0.68684,0.00662,0.03229),(0.00887,0.64647,0.00887,0.04144),(0.01360,0.58079,0.01360,0.05884)} {(0.00025,0.00143,0.00025,0.79696),(0.00050,0.00273,0.00050,0.72410),(0.00073,0.00388,0.00073,0.67475),(0.00098,0.00508,0.00098,0.63187),(0.00128,0.00642,0.00128,0.59023),(0.00166,0.00807,0.00166,0.54598),(0.00222,0.01036,0.00222,0.49314),(0.00340,0.01471,0.00340,0.41063)} {(0.87134,0.00056,0.00326,0.00056),(0.82209,0.00112,0.00626,0.00112),(0.78761,0.00164,0.00894,0.00164),(0.75682,0.00221,0.01175,0.00221),(0.72611,0.00287,0.01493,0.00287),(0.69249,0.00373,0.01884,0.00373),(0.65085,0.00499,0.02432,0.00499),(0.58192,0.00765,0.03487,0.00765)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.87134,0.00056,0.00326,0.00056),(0.82209,0.00112,0.00626,0.00112),(0.78761,0.00164,0.00894,0.00164),(0.75682,0.00221,0.01175,0.00221),(0.72611,0.00287,0.01493,0.00287),(0.69249,0.00373,0.01884,0.00373),(0.65085,0.00499,0.02432,0.00499),(0.58192,0.00765,0.03487,0.00765)} {(0.00025,0.00143,0.00025,0.79696),(0.00050,0.00273,0.00050,0.72410),(0.00073,0.00388,0.00073,0.67475),(0.00098,0.00508,0.00098,0.63187),(0.00128,0.00642,0.00128,0.59023),(0.00166,0.00807,0.00166,0.54598),(0.00222,0.01036,0.00222,0.49314),(0.00340,0.01471,0.00340,0.41063)} {(0.00025,0.00143,0.00025,0.79696),(0.00050,0.00273,0.00050,0.72410),(0.00073,0.00388,0.00073,0.67475),(0.00098,0.00508,0.00098,0.63187),(0.00128,0.00642,0.00128,0.59023),(0.00166,0.00807,0.00166,0.54598),(0.00222,0.01036,0.00222,0.49314),(0.00340,0.01471,0.00340,0.41063)} {(0.00060,0.00737,0.02836,0.00060),(0.00118,0.01008,0.03811,0.00117),(0.00170,0.01193,0.04452,0.00168),(0.00226,0.01356,0.04995,0.00223),(0.00291,0.01515,0.05505,0.00286),(0.00372,0.01686,0.06028,0.00366),(0.00490,0.01893,0.06619,0.00479),(0.00726,0.02222,0.07444,0.00707)} {(0.00025,0.00143,0.00025,0.79696),(0.00050,0.00273,0.00050,0.72410),(0.00073,0.00388,0.00073,0.67475),(0.00098,0.00508,0.00098,0.63187),(0.00128,0.00642,0.00128,0.59023),(0.00166,0.00807,0.00166,0.54598),(0.00222,0.01036,0.00222,0.49314),(0.00340,0.01471,0.00340,0.41063)} {(0.02957,0.02211,0.00181,0.00180),(0.04046,0.03023,0.00353,0.00350),(0.04793,0.03579,0.00511,0.00505),(0.05447,0.04067,0.00679,0.00669),(0.06087,0.04546,0.00873,0.00859),(0.06773,0.05059,0.01117,0.01097),(0.07598,0.05679,0.01469,0.01438),(0.08896,0.06665,0.02178,0.02122)} {(0.01478,0.00090,0.00090,0.02121),(0.02023,0.00175,0.00177,0.02848),(0.02396,0.00252,0.00255,0.03327),(0.02723,0.00335,0.00339,0.03733),(0.03044,0.00429,0.00436,0.04116),(0.03386,0.00548,0.00559,0.04510),(0.03799,0.00719,0.00734,0.04960),(0.04448,0.01061,0.01089,0.05605)} {(0.00025,0.00143,0.00025,0.79696),(0.00050,0.00273,0.00050,0.72410),(0.00073,0.00388,0.00073,0.67475),(0.00098,0.00508,0.00098,0.63187),(0.00128,0.00642,0.00128,0.59023),(0.00166,0.00807,0.00166,0.54598),(0.00222,0.01036,0.00222,0.49314),(0.00340,0.01471,0.00340,0.41063)} ] +[5] CLV 6: [ {(0.02852,0.00135,0.00026,0.00162),(0.03840,0.00257,0.00069,0.00302),(0.04493,0.00364,0.00118,0.00423),(0.05049,0.00475,0.00178,0.00545),(0.05574,0.00600,0.00255,0.00681),(0.06115,0.00751,0.00362,0.00843),(0.06733,0.00961,0.00530,0.01063),(0.07619,0.01358,0.00913,0.01469)} {(0.01602,0.00009,0.02596,0.00009),(0.02063,0.00017,0.03437,0.00017),(0.02337,0.00025,0.03966,0.00025),(0.02548,0.00032,0.04393,0.00032),(0.02727,0.00042,0.04774,0.00042),(0.02887,0.00053,0.05136,0.00053),(0.03034,0.00070,0.05500,0.00070),(0.03158,0.00103,0.05885,0.00103)} {(0.02895,0.02171,0.00296,0.00293),(0.03928,0.02951,0.00569,0.00562),(0.04626,0.03480,0.00813,0.00801),(0.05231,0.03941,0.01069,0.01050),(0.05815,0.04391,0.01360,0.01333),(0.06433,0.04872,0.01718,0.01680),(0.07166,0.05451,0.02221,0.02165),(0.08295,0.06373,0.03196,0.03098)} {(0.00048,0.77691,0.00048,0.00299),(0.00093,0.69964,0.00093,0.00579),(0.00134,0.64819,0.00134,0.00829),(0.00179,0.60410,0.00179,0.01091),(0.00231,0.56186,0.00231,0.01386),(0.00297,0.51761,0.00297,0.01747),(0.00393,0.46567,0.00393,0.02246),(0.00594,0.38662,0.00594,0.03180)} {(0.01447,0.00147,0.00148,0.02025),(0.01964,0.00281,0.00284,0.02670),(0.02313,0.00401,0.00407,0.03079),(0.02615,0.00525,0.00535,0.03416),(0.02908,0.00666,0.00680,0.03725),(0.03217,0.00840,0.00859,0.04032),(0.03583,0.01082,0.01111,0.04369),(0.04147,0.01549,0.01598,0.04824)} {(0.00003,0.00133,0.00003,0.05815),(0.00007,0.00247,0.00007,0.07193),(0.00012,0.00343,0.00012,0.07913),(0.00018,0.00440,0.00018,0.08396),(0.00026,0.00545,0.00026,0.08738),(0.00037,0.00668,0.00037,0.08965),(0.00056,0.00830,0.00056,0.09050),(0.00099,0.01110,0.00099,0.08777)} {(0.00016,0.00003,0.67911,0.00003),(0.00029,0.00005,0.57522,0.00005),(0.00039,0.00007,0.50848,0.00007),(0.00049,0.00009,0.45299,0.00009),(0.00060,0.00011,0.40140,0.00011),(0.00073,0.00013,0.34917,0.00013),(0.00088,0.00016,0.29046,0.00016),(0.00114,0.00022,0.20726,0.00022)} {(0.00048,0.77691,0.00048,0.00299),(0.00093,0.69964,0.00093,0.00579),(0.00134,0.64819,0.00134,0.00829),(0.00179,0.60410,0.00179,0.01091),(0.00231,0.56186,0.00231,0.01386),(0.00297,0.51761,0.00297,0.01747),(0.00393,0.46567,0.00393,0.02246),(0.00594,0.38662,0.00594,0.03180)} {(0.00626,0.00041,0.00038,0.01788),(0.00803,0.00076,0.00070,0.02234),(0.00909,0.00107,0.00097,0.02474),(0.00993,0.00138,0.00124,0.02642),(0.01065,0.00172,0.00153,0.02767),(0.01135,0.00213,0.00187,0.02859),(0.01207,0.00269,0.00233,0.02911),(0.01298,0.00372,0.00318,0.02868)} {(0.01602,0.00009,0.02596,0.00009),(0.02063,0.00017,0.03437,0.00017),(0.02337,0.00025,0.03966,0.00025),(0.02548,0.00032,0.04393,0.00032),(0.02727,0.00042,0.04774,0.00042),(0.02887,0.00053,0.05136,0.00053),(0.03034,0.00070,0.05500,0.00070),(0.03158,0.00103,0.05885,0.00103)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.02666,0.01036,0.00092,0.00084),(0.03491,0.01381,0.00180,0.00160),(0.04004,0.01607,0.00260,0.00227),(0.04416,0.01798,0.00345,0.00296),(0.04783,0.01978,0.00443,0.00374),(0.05135,0.02163,0.00564,0.00469),(0.05497,0.02378,0.00737,0.00602),(0.05917,0.02694,0.01075,0.00858)} {(0.00011,0.00065,0.00011,0.67193),(0.00020,0.00119,0.00020,0.56793),(0.00028,0.00164,0.00028,0.50176),(0.00036,0.00209,0.00036,0.44715),(0.00045,0.00257,0.00045,0.39673),(0.00055,0.00314,0.00055,0.34602),(0.00070,0.00388,0.00070,0.28946),(0.00099,0.00515,0.00099,0.21009)} {(0.00011,0.00065,0.00011,0.67193),(0.00020,0.00119,0.00020,0.56793),(0.00028,0.00164,0.00028,0.50176),(0.00036,0.00209,0.00036,0.44715),(0.00045,0.00257,0.00045,0.39673),(0.00055,0.00314,0.00055,0.34602),(0.00070,0.00388,0.00070,0.28946),(0.00099,0.00515,0.00099,0.21009)} {(0.00003,0.00673,0.00085,0.00007),(0.00008,0.00888,0.00158,0.00020),(0.00015,0.01025,0.00221,0.00033),(0.00022,0.01138,0.00283,0.00050),(0.00032,0.01242,0.00351,0.00071),(0.00047,0.01346,0.00430,0.00101),(0.00070,0.01461,0.00535,0.00147),(0.00124,0.01619,0.00719,0.00251)} {(0.00011,0.00065,0.00011,0.67193),(0.00020,0.00119,0.00020,0.56793),(0.00028,0.00164,0.00028,0.50176),(0.00036,0.00209,0.00036,0.44715),(0.00045,0.00257,0.00045,0.39673),(0.00055,0.00314,0.00055,0.34602),(0.00070,0.00388,0.00070,0.28946),(0.00099,0.00515,0.00099,0.21009)} {(0.02702,0.00052,0.00017,0.00007),(0.03562,0.00099,0.00045,0.00019),(0.04106,0.00141,0.00077,0.00032),(0.04550,0.00185,0.00116,0.00049),(0.04955,0.00235,0.00166,0.00071),(0.05353,0.00297,0.00236,0.00103),(0.05781,0.00385,0.00346,0.00153),(0.06328,0.00557,0.00597,0.00271)} {(0.00046,0.00137,0.00005,0.00153),(0.00088,0.00254,0.00013,0.00279),(0.00125,0.00354,0.00022,0.00384),(0.00164,0.00455,0.00033,0.00487),(0.00208,0.00565,0.00049,0.00597),(0.00262,0.00696,0.00070,0.00725),(0.00337,0.00870,0.00105,0.00889),(0.00484,0.01181,0.00186,0.01170)} {(0.00011,0.00065,0.00011,0.67193),(0.00020,0.00119,0.00020,0.56793),(0.00028,0.00164,0.00028,0.50176),(0.00036,0.00209,0.00036,0.44715),(0.00045,0.00257,0.00045,0.39673),(0.00055,0.00314,0.00055,0.34602),(0.00070,0.00388,0.00070,0.28946),(0.00099,0.00515,0.00099,0.21009)} ] +[5] CLV 7: [ {(0.00100,0.86588,0.00100,0.00572),(0.00199,0.81570,0.00199,0.01091),(0.00292,0.78095,0.00292,0.01552),(0.00392,0.75021,0.00392,0.02030),(0.00510,0.71980,0.00510,0.02570),(0.00662,0.68684,0.00662,0.03229),(0.00887,0.64647,0.00887,0.04144),(0.01360,0.58079,0.01360,0.05884)} {(0.00036,0.00006,0.80171,0.00006),(0.00070,0.00012,0.72923,0.00012),(0.00099,0.00018,0.67968,0.00018),(0.00131,0.00025,0.63633,0.00025),(0.00166,0.00032,0.59394,0.00032),(0.00209,0.00041,0.54856,0.00041),(0.00270,0.00055,0.49392,0.00055),(0.00387,0.00085,0.40749,0.00085)} {(0.01478,0.00090,0.00090,0.02121),(0.02023,0.00175,0.00177,0.02848),(0.02396,0.00252,0.00255,0.03327),(0.02723,0.00335,0.00339,0.03733),(0.03044,0.00429,0.00436,0.04116),(0.03386,0.00548,0.00559,0.04510),(0.03799,0.00719,0.00734,0.04960),(0.04448,0.01061,0.01089,0.05605)} {(0.00100,0.86588,0.00100,0.00572),(0.00199,0.81570,0.00199,0.01091),(0.00292,0.78095,0.00292,0.01552),(0.00392,0.75021,0.00392,0.02030),(0.00510,0.71980,0.00510,0.02570),(0.00662,0.68684,0.00662,0.03229),(0.00887,0.64647,0.00887,0.04144),(0.01360,0.58079,0.01360,0.05884)} {(0.00025,0.00143,0.00025,0.79696),(0.00050,0.00273,0.00050,0.72410),(0.00073,0.00388,0.00073,0.67475),(0.00098,0.00508,0.00098,0.63187),(0.00128,0.00642,0.00128,0.59023),(0.00166,0.00807,0.00166,0.54598),(0.00222,0.01036,0.00222,0.49314),(0.00340,0.01471,0.00340,0.41063)} {(0.00025,0.00143,0.00025,0.79696),(0.00050,0.00273,0.00050,0.72410),(0.00073,0.00388,0.00073,0.67475),(0.00098,0.00508,0.00098,0.63187),(0.00128,0.00642,0.00128,0.59023),(0.00166,0.00807,0.00166,0.54598),(0.00222,0.01036,0.00222,0.49314),(0.00340,0.01471,0.00340,0.41063)} {(0.00036,0.00006,0.80171,0.00006),(0.00070,0.00012,0.72923,0.00012),(0.00099,0.00018,0.67968,0.00018),(0.00131,0.00025,0.63633,0.00025),(0.00166,0.00032,0.59394,0.00032),(0.00209,0.00041,0.54856,0.00041),(0.00270,0.00055,0.49392,0.00055),(0.00387,0.00085,0.40749,0.00085)} {(0.00100,0.86588,0.00100,0.00572),(0.00199,0.81570,0.00199,0.01091),(0.00292,0.78095,0.00292,0.01552),(0.00392,0.75021,0.00392,0.02030),(0.00510,0.71980,0.00510,0.02570),(0.00662,0.68684,0.00662,0.03229),(0.00887,0.64647,0.00887,0.04144),(0.01360,0.58079,0.01360,0.05884)} {(0.02957,0.02211,0.00181,0.00180),(0.04046,0.03023,0.00353,0.00350),(0.04793,0.03579,0.00511,0.00505),(0.05447,0.04067,0.00679,0.00669),(0.06087,0.04546,0.00873,0.00859),(0.06773,0.05059,0.01117,0.01097),(0.07598,0.05679,0.01469,0.01438),(0.08896,0.06665,0.02178,0.02122)} {(0.87134,0.00056,0.00326,0.00056),(0.82209,0.00112,0.00626,0.00112),(0.78761,0.00164,0.00894,0.00164),(0.75682,0.00221,0.01175,0.00221),(0.72611,0.00287,0.01493,0.00287),(0.69249,0.00373,0.01884,0.00373),(0.65085,0.00499,0.02432,0.00499),(0.58192,0.00765,0.03487,0.00765)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.87134,0.00056,0.00326,0.00056),(0.82209,0.00112,0.00626,0.00112),(0.78761,0.00164,0.00894,0.00164),(0.75682,0.00221,0.01175,0.00221),(0.72611,0.00287,0.01493,0.00287),(0.69249,0.00373,0.01884,0.00373),(0.65085,0.00499,0.02432,0.00499),(0.58192,0.00765,0.03487,0.00765)} {(0.00025,0.00143,0.00025,0.79696),(0.00050,0.00273,0.00050,0.72410),(0.00073,0.00388,0.00073,0.67475),(0.00098,0.00508,0.00098,0.63187),(0.00128,0.00642,0.00128,0.59023),(0.00166,0.00807,0.00166,0.54598),(0.00222,0.01036,0.00222,0.49314),(0.00340,0.01471,0.00340,0.41063)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00050,0.03517,0.00050,0.06749),(0.00100,0.04716,0.00100,0.08887),(0.00146,0.05504,0.00146,0.10232),(0.00196,0.06171,0.00196,0.11326),(0.00255,0.06800,0.00255,0.12315),(0.00331,0.07447,0.00331,0.13279),(0.00443,0.08184,0.00443,0.14296),(0.00680,0.09243,0.00680,0.15545)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.87134,0.00056,0.00326,0.00056),(0.82209,0.00112,0.00626,0.00112),(0.78761,0.00164,0.00894,0.00164),(0.75682,0.00221,0.01175,0.00221),(0.72611,0.00287,0.01493,0.00287),(0.69249,0.00373,0.01884,0.00373),(0.65085,0.00499,0.02432,0.00499),(0.58192,0.00765,0.03487,0.00765)} {(0.87134,0.00056,0.00326,0.00056),(0.82209,0.00112,0.00626,0.00112),(0.78761,0.00164,0.00894,0.00164),(0.75682,0.00221,0.01175,0.00221),(0.72611,0.00287,0.01493,0.00287),(0.69249,0.00373,0.01884,0.00373),(0.65085,0.00499,0.02432,0.00499),(0.58192,0.00765,0.03487,0.00765)} {(0.00036,0.00006,0.80171,0.00006),(0.00070,0.00012,0.72923,0.00012),(0.00099,0.00018,0.67968,0.00018),(0.00131,0.00025,0.63633,0.00025),(0.00166,0.00032,0.59394,0.00032),(0.00209,0.00041,0.54856,0.00041),(0.00270,0.00055,0.49392,0.00055),(0.00387,0.00085,0.40749,0.00085)} ] + + + TEST alpha(ncats) = 5.00( 8), mode = MEDIAN 0.402412 0.601743 0.739418 0.868502 1.004287 1.162317 1.375127 1.846194 [5] P-matrix for branch length 0.100000 @@ -2748,7 +5496,183 @@ [5] CLV 7: [ {(0.00090,0.87229,0.00090,0.00517),(0.00195,0.81763,0.00195,0.01067),(0.00286,0.78278,0.00286,0.01525),(0.00385,0.75209,0.00385,0.01999),(0.00502,0.72173,0.00502,0.02533),(0.00653,0.68871,0.00653,0.03190),(0.00879,0.64783,0.00879,0.04112),(0.01452,0.57004,0.01452,0.06198)} {(0.00033,0.00006,0.81105,0.00006),(0.00068,0.00012,0.73201,0.00012),(0.00098,0.00018,0.68228,0.00018),(0.00128,0.00024,0.63897,0.00024),(0.00163,0.00031,0.59661,0.00031),(0.00207,0.00041,0.55112,0.00041),(0.00268,0.00055,0.49574,0.00055),(0.00409,0.00091,0.39368,0.00091)} {(0.01408,0.00081,0.00082,0.02025),(0.02002,0.00171,0.00173,0.02821),(0.02377,0.00248,0.00251,0.03302),(0.02704,0.00329,0.00334,0.03708),(0.03023,0.00423,0.00430,0.04092),(0.03367,0.00541,0.00551,0.04489),(0.03785,0.00713,0.00728,0.04946),(0.04551,0.01125,0.01156,0.05699)} {(0.00090,0.87229,0.00090,0.00517),(0.00195,0.81763,0.00195,0.01067),(0.00286,0.78278,0.00286,0.01525),(0.00385,0.75209,0.00385,0.01999),(0.00502,0.72173,0.00502,0.02533),(0.00653,0.68871,0.00653,0.03190),(0.00879,0.64783,0.00879,0.04112),(0.01452,0.57004,0.01452,0.06198)} {(0.00023,0.00129,0.00023,0.80640),(0.00049,0.00267,0.00049,0.72688),(0.00072,0.00381,0.00072,0.67733),(0.00096,0.00500,0.00096,0.63447),(0.00126,0.00633,0.00126,0.59284),(0.00163,0.00797,0.00163,0.54846),(0.00220,0.01028,0.00220,0.49490),(0.00363,0.01550,0.00363,0.39757)} {(0.00023,0.00129,0.00023,0.80640),(0.00049,0.00267,0.00049,0.72688),(0.00072,0.00381,0.00072,0.67733),(0.00096,0.00500,0.00096,0.63447),(0.00126,0.00633,0.00126,0.59284),(0.00163,0.00797,0.00163,0.54846),(0.00220,0.01028,0.00220,0.49490),(0.00363,0.01550,0.00363,0.39757)} {(0.00033,0.00006,0.81105,0.00006),(0.00068,0.00012,0.73201,0.00012),(0.00098,0.00018,0.68228,0.00018),(0.00128,0.00024,0.63897,0.00024),(0.00163,0.00031,0.59661,0.00031),(0.00207,0.00041,0.55112,0.00041),(0.00268,0.00055,0.49574,0.00055),(0.00409,0.00091,0.39368,0.00091)} {(0.00090,0.87229,0.00090,0.00517),(0.00195,0.81763,0.00195,0.01067),(0.00286,0.78278,0.00286,0.01525),(0.00385,0.75209,0.00385,0.01999),(0.00502,0.72173,0.00502,0.02533),(0.00653,0.68871,0.00653,0.03190),(0.00879,0.64783,0.00879,0.04112),(0.01452,0.57004,0.01452,0.06198)} {(0.02817,0.02106,0.00163,0.00162),(0.04004,0.02991,0.00345,0.00342),(0.04753,0.03550,0.00502,0.00496),(0.05407,0.04038,0.00668,0.00658),(0.06047,0.04515,0.00860,0.00846),(0.06734,0.05030,0.01102,0.01083),(0.07570,0.05658,0.01456,0.01426),(0.09102,0.06824,0.02311,0.02250)} {(0.87759,0.00051,0.00295,0.00051),(0.82401,0.00109,0.00612,0.00109),(0.78944,0.00161,0.00879,0.00161),(0.75872,0.00217,0.01156,0.00217),(0.72806,0.00283,0.01471,0.00283),(0.69440,0.00367,0.01861,0.00367),(0.65226,0.00494,0.02412,0.00494),(0.57049,0.00817,0.03679,0.00817)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.87759,0.00051,0.00295,0.00051),(0.82401,0.00109,0.00612,0.00109),(0.78944,0.00161,0.00879,0.00161),(0.75872,0.00217,0.01156,0.00217),(0.72806,0.00283,0.01471,0.00283),(0.69440,0.00367,0.01861,0.00367),(0.65226,0.00494,0.02412,0.00494),(0.57049,0.00817,0.03679,0.00817)} {(0.00023,0.00129,0.00023,0.80640),(0.00049,0.00267,0.00049,0.72688),(0.00072,0.00381,0.00072,0.67733),(0.00096,0.00500,0.00096,0.63447),(0.00126,0.00633,0.00126,0.59284),(0.00163,0.00797,0.00163,0.54846),(0.00220,0.01028,0.00220,0.49490),(0.00363,0.01550,0.00363,0.39757)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00045,0.03359,0.00045,0.06460),(0.00097,0.04671,0.00097,0.08809),(0.00143,0.05463,0.00143,0.10164),(0.00193,0.06131,0.00193,0.11262),(0.00251,0.06761,0.00251,0.12255),(0.00327,0.07411,0.00327,0.13227),(0.00439,0.08160,0.00439,0.14265),(0.00726,0.09398,0.00726,0.15698)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.87759,0.00051,0.00295,0.00051),(0.82401,0.00109,0.00612,0.00109),(0.78944,0.00161,0.00879,0.00161),(0.75872,0.00217,0.01156,0.00217),(0.72806,0.00283,0.01471,0.00283),(0.69440,0.00367,0.01861,0.00367),(0.65226,0.00494,0.02412,0.00494),(0.57049,0.00817,0.03679,0.00817)} {(0.87759,0.00051,0.00295,0.00051),(0.82401,0.00109,0.00612,0.00109),(0.78944,0.00161,0.00879,0.00161),(0.75872,0.00217,0.01156,0.00217),(0.72806,0.00283,0.01471,0.00283),(0.69440,0.00367,0.01861,0.00367),(0.65226,0.00494,0.02412,0.00494),(0.57049,0.00817,0.03679,0.00817)} {(0.00033,0.00006,0.81105,0.00006),(0.00068,0.00012,0.73201,0.00012),(0.00098,0.00018,0.68228,0.00018),(0.00128,0.00024,0.63897,0.00024),(0.00163,0.00031,0.59661,0.00031),(0.00207,0.00041,0.55112,0.00041),(0.00268,0.00055,0.49574,0.00055),(0.00409,0.00091,0.39368,0.00091)} ] - TEST alpha(ncats) = 10.00( 8) + TEST alpha(ncats) = 10.00( 8), mode = MEAN + +0.568782 0.720857 0.827214 0.923439 1.021473 1.132002 1.274937 1.531296 +[6] P-matrix for branch length 0.100000 ++0.9547 +0.0215 +0.0131 +0.0107 ++0.0161 +0.9525 +0.0054 +0.0260 ++0.0392 +0.0215 +0.9285 +0.0107 ++0.0161 +0.0521 +0.0054 +0.9264 + ++0.9431 +0.0270 +0.0163 +0.0135 ++0.0203 +0.9405 +0.0068 +0.0325 ++0.0490 +0.0270 +0.9104 +0.0135 ++0.0203 +0.0650 +0.0068 +0.9080 + ++0.9351 +0.0309 +0.0186 +0.0154 ++0.0232 +0.9322 +0.0077 +0.0369 ++0.0557 +0.0309 +0.8980 +0.0154 ++0.0232 +0.0738 +0.0077 +0.8954 + ++0.9280 +0.0343 +0.0205 +0.0172 ++0.0257 +0.9249 +0.0086 +0.0408 ++0.0616 +0.0343 +0.8869 +0.0172 ++0.0257 +0.0815 +0.0086 +0.8841 + ++0.9208 +0.0378 +0.0225 +0.0189 ++0.0283 +0.9176 +0.0094 +0.0447 ++0.0676 +0.0378 +0.8758 +0.0189 ++0.0283 +0.0893 +0.0094 +0.8729 + ++0.9129 +0.0416 +0.0247 +0.0208 ++0.0312 +0.9094 +0.0104 +0.0489 ++0.0741 +0.0416 +0.8634 +0.0208 ++0.0312 +0.0979 +0.0104 +0.8605 + ++0.9027 +0.0466 +0.0275 +0.0233 ++0.0349 +0.8991 +0.0116 +0.0543 ++0.0824 +0.0466 +0.8478 +0.0233 ++0.0349 +0.1087 +0.0116 +0.8448 + ++0.8849 +0.0553 +0.0322 +0.0276 ++0.0414 +0.8811 +0.0138 +0.0636 ++0.0966 +0.0553 +0.8205 +0.0276 ++0.0414 +0.1272 +0.0138 +0.8175 + + +[6] P-matrix for branch length 0.200000 ++0.9125 +0.0418 +0.0248 +0.0209 ++0.0314 +0.9090 +0.0105 +0.0492 ++0.0744 +0.0418 +0.8628 +0.0209 ++0.0314 +0.0983 +0.0105 +0.8599 + ++0.8911 +0.0522 +0.0306 +0.0261 ++0.0392 +0.8873 +0.0131 +0.0604 ++0.0917 +0.0522 +0.8299 +0.0261 ++0.0392 +0.1208 +0.0131 +0.8269 + ++0.8766 +0.0594 +0.0344 +0.0297 ++0.0445 +0.8728 +0.0148 +0.0679 ++0.1032 +0.0594 +0.8078 +0.0297 ++0.0445 +0.1358 +0.0148 +0.8049 + ++0.8638 +0.0657 +0.0377 +0.0328 ++0.0492 +0.8600 +0.0164 +0.0744 ++0.1132 +0.0657 +0.7883 +0.0328 ++0.0492 +0.1487 +0.0164 +0.7856 + ++0.8511 +0.0720 +0.0410 +0.0360 ++0.0540 +0.8474 +0.0180 +0.0807 ++0.1230 +0.0720 +0.7691 +0.0360 ++0.0540 +0.1613 +0.0180 +0.7667 + ++0.8371 +0.0789 +0.0445 +0.0395 ++0.0592 +0.8336 +0.0197 +0.0875 ++0.1336 +0.0789 +0.7480 +0.0395 ++0.0592 +0.1750 +0.0197 +0.7461 + ++0.8196 +0.0877 +0.0489 +0.0439 ++0.0658 +0.8164 +0.0219 +0.0958 ++0.1466 +0.0877 +0.7218 +0.0439 ++0.0658 +0.1917 +0.0219 +0.7206 + ++0.7896 +0.1029 +0.0561 +0.0514 ++0.0772 +0.7875 +0.0257 +0.1096 ++0.1682 +0.1029 +0.6775 +0.0514 ++0.0772 +0.2191 +0.0257 +0.6780 + + +[6] P-matrix for branch length 1.000000 ++0.6624 +0.1697 +0.0830 +0.0849 ++0.1273 +0.6703 +0.0424 +0.1600 ++0.2491 +0.1697 +0.4963 +0.0849 ++0.1273 +0.3200 +0.0424 +0.5102 + ++0.6051 +0.2013 +0.0929 +0.1007 ++0.1510 +0.6206 +0.0503 +0.1780 ++0.2787 +0.2013 +0.4193 +0.1007 ++0.1510 +0.3561 +0.0503 +0.4426 + ++0.5707 +0.2208 +0.0980 +0.1104 ++0.1656 +0.5919 +0.0552 +0.1873 ++0.2941 +0.2208 +0.3747 +0.1104 ++0.1656 +0.3745 +0.0552 +0.4047 + ++0.5432 +0.2368 +0.1016 +0.1184 ++0.1776 +0.5695 +0.0592 +0.1937 ++0.3049 +0.2368 +0.3399 +0.1184 ++0.1776 +0.3874 +0.0592 +0.3758 + ++0.5181 +0.2516 +0.1045 +0.1258 ++0.1887 +0.5496 +0.0629 +0.1988 ++0.3135 +0.2516 +0.3091 +0.1258 ++0.1887 +0.3976 +0.0629 +0.3508 + ++0.4930 +0.2667 +0.1069 +0.1334 ++0.2000 +0.5302 +0.0667 +0.2031 ++0.3207 +0.2667 +0.2792 +0.1334 ++0.2000 +0.4062 +0.0667 +0.3270 + ++0.4650 +0.2840 +0.1090 +0.1420 ++0.2130 +0.5091 +0.0710 +0.2069 ++0.3270 +0.2840 +0.2470 +0.1420 ++0.2130 +0.4139 +0.0710 +0.3021 + ++0.4249 +0.3096 +0.1108 +0.1548 ++0.2322 +0.4801 +0.0774 +0.2104 ++0.3323 +0.3096 +0.2034 +0.1548 ++0.2322 +0.4207 +0.0774 +0.2697 + + +[6] P-matrix for branch length 1.000000 ++0.6624 +0.1697 +0.0830 +0.0849 ++0.1273 +0.6703 +0.0424 +0.1600 ++0.2491 +0.1697 +0.4963 +0.0849 ++0.1273 +0.3200 +0.0424 +0.5102 + ++0.6051 +0.2013 +0.0929 +0.1007 ++0.1510 +0.6206 +0.0503 +0.1780 ++0.2787 +0.2013 +0.4193 +0.1007 ++0.1510 +0.3561 +0.0503 +0.4426 + ++0.5707 +0.2208 +0.0980 +0.1104 ++0.1656 +0.5919 +0.0552 +0.1873 ++0.2941 +0.2208 +0.3747 +0.1104 ++0.1656 +0.3745 +0.0552 +0.4047 + ++0.5432 +0.2368 +0.1016 +0.1184 ++0.1776 +0.5695 +0.0592 +0.1937 ++0.3049 +0.2368 +0.3399 +0.1184 ++0.1776 +0.3874 +0.0592 +0.3758 + ++0.5181 +0.2516 +0.1045 +0.1258 ++0.1887 +0.5496 +0.0629 +0.1988 ++0.3135 +0.2516 +0.3091 +0.1258 ++0.1887 +0.3976 +0.0629 +0.3508 + ++0.4930 +0.2667 +0.1069 +0.1334 ++0.2000 +0.5302 +0.0667 +0.2031 ++0.3207 +0.2667 +0.2792 +0.1334 ++0.2000 +0.4062 +0.0667 +0.3270 + ++0.4650 +0.2840 +0.1090 +0.1420 ++0.2130 +0.5091 +0.0710 +0.2069 ++0.3270 +0.2840 +0.2470 +0.1420 ++0.2130 +0.4139 +0.0710 +0.3021 + ++0.4249 +0.3096 +0.1108 +0.1548 ++0.2322 +0.4801 +0.0774 +0.2104 ++0.3323 +0.3096 +0.2034 +0.1548 ++0.2322 +0.4207 +0.0774 +0.2697 + + +[6] CLV 5: [ {(0.03904,0.07320,0.00399,0.08762),(0.04792,0.08839,0.00616,0.10467),(0.05379,0.09810,0.00789,0.11532),(0.05887,0.10629,0.00959,0.12415),(0.06384,0.11409,0.01144,0.13241),(0.06919,0.12227,0.01366,0.14091),(0.07574,0.13196,0.01671,0.15073),(0.08653,0.14706,0.02260,0.16549)} {(0.83257,0.00098,0.00554,0.00098),(0.79399,0.00154,0.00841,0.00154),(0.76837,0.00198,0.01065,0.00198),(0.74611,0.00243,0.01281,0.00243),(0.72430,0.00291,0.01512,0.00291),(0.70070,0.00350,0.01784,0.00350),(0.67166,0.00433,0.02149,0.00433),(0.62349,0.00595,0.02829,0.00595)} {(0.03816,0.02851,0.00311,0.00308),(0.04656,0.03477,0.00479,0.00474),(0.05203,0.03885,0.00613,0.00604),(0.05672,0.04235,0.00743,0.00732),(0.06125,0.04574,0.00885,0.00871),(0.06607,0.04935,0.01054,0.01036),(0.07189,0.05371,0.01286,0.01261),(0.08124,0.06077,0.01730,0.01691)} {(0.00175,0.82632,0.00175,0.00966),(0.00273,0.78735,0.00273,0.01460),(0.00352,0.76171,0.00352,0.01843),(0.00431,0.73958,0.00431,0.02211),(0.00518,0.71802,0.00518,0.02603),(0.00623,0.69486,0.00623,0.03062),(0.00769,0.66658,0.00769,0.03674),(0.01058,0.62022,0.01058,0.04803)} {(0.01908,0.00154,0.00156,0.02697),(0.02328,0.00237,0.00240,0.03240),(0.02601,0.00302,0.00306,0.03583),(0.02836,0.00366,0.00372,0.03869),(0.03062,0.00435,0.00443,0.04138),(0.03304,0.00518,0.00527,0.04417),(0.03595,0.00630,0.00643,0.04741),(0.04062,0.00846,0.00865,0.05231)} {(0.00087,0.04468,0.00087,0.08453),(0.00136,0.05362,0.00136,0.09993),(0.00176,0.05925,0.00176,0.10928),(0.00216,0.06394,0.00216,0.11683),(0.00259,0.06836,0.00259,0.12370),(0.00311,0.07293,0.00311,0.13055),(0.00385,0.07824,0.00385,0.13812),(0.00529,0.08629,0.00529,0.14858)} {(0.00062,0.00011,0.74448,0.00011),(0.00093,0.00017,0.68877,0.00017),(0.00118,0.00022,0.65249,0.00022),(0.00142,0.00027,0.62145,0.00027),(0.00168,0.00032,0.59147,0.00032),(0.00198,0.00039,0.55954,0.00039),(0.00239,0.00048,0.52101,0.00048),(0.00314,0.00066,0.45899,0.00066)} {(0.00175,0.82632,0.00175,0.00966),(0.00273,0.78735,0.00273,0.01460),(0.00352,0.76171,0.00352,0.01843),(0.00431,0.73958,0.00431,0.02211),(0.00518,0.71802,0.00518,0.02603),(0.00623,0.69486,0.00623,0.03062),(0.00769,0.66658,0.00769,0.03674),(0.01058,0.62022,0.01058,0.04803)} {(0.00044,0.00242,0.00044,0.73937),(0.00068,0.00365,0.00068,0.68377),(0.00088,0.00461,0.00088,0.64782),(0.00108,0.00553,0.00108,0.61722),(0.00129,0.00651,0.00129,0.58781),(0.00156,0.00765,0.00156,0.55665),(0.00192,0.00918,0.00192,0.51928),(0.00265,0.01201,0.00265,0.45964)} {(0.83257,0.00098,0.00554,0.00098),(0.79399,0.00154,0.00841,0.00154),(0.76837,0.00198,0.01065,0.00198),(0.74611,0.00243,0.01281,0.00243),(0.72430,0.00291,0.01512,0.00291),(0.70070,0.00350,0.01784,0.00350),(0.67166,0.00433,0.02149,0.00433),(0.62349,0.00595,0.02829,0.00595)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.83257,0.00098,0.00554,0.00098),(0.79399,0.00154,0.00841,0.00154),(0.76837,0.00198,0.01065,0.00198),(0.74611,0.00243,0.01281,0.00243),(0.72430,0.00291,0.01512,0.00291),(0.70070,0.00350,0.01784,0.00350),(0.67166,0.00433,0.02149,0.00433),(0.62349,0.00595,0.02829,0.00595)} {(0.00044,0.00242,0.00044,0.73937),(0.00068,0.00365,0.00068,0.68377),(0.00088,0.00461,0.00088,0.64782),(0.00108,0.00553,0.00108,0.61722),(0.00129,0.00651,0.00129,0.58781),(0.00156,0.00765,0.00156,0.55665),(0.00192,0.00918,0.00192,0.51928),(0.00265,0.01201,0.00265,0.45964)} 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{(0.03816,0.02851,0.00311,0.00308),(0.04656,0.03477,0.00479,0.00474),(0.05203,0.03885,0.00613,0.00604),(0.05672,0.04235,0.00743,0.00732),(0.06125,0.04574,0.00885,0.00871),(0.06607,0.04935,0.01054,0.01036),(0.07189,0.05371,0.01286,0.01261),(0.08124,0.06077,0.01730,0.01691)} {(0.01908,0.00154,0.00156,0.02697),(0.02328,0.00237,0.00240,0.03240),(0.02601,0.00302,0.00306,0.03583),(0.02836,0.00366,0.00372,0.03869),(0.03062,0.00435,0.00443,0.04138),(0.03304,0.00518,0.00527,0.04417),(0.03595,0.00630,0.00643,0.04741),(0.04062,0.00846,0.00865,0.05231)} {(0.00044,0.00242,0.00044,0.73937),(0.00068,0.00365,0.00068,0.68377),(0.00088,0.00461,0.00088,0.64782),(0.00108,0.00553,0.00108,0.61722),(0.00129,0.00651,0.00129,0.58781),(0.00156,0.00765,0.00156,0.55665),(0.00192,0.00918,0.00192,0.51928),(0.00265,0.01201,0.00265,0.45964)} ] +[6] CLV 6: [ 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{(0.00044,0.00242,0.00044,0.73937),(0.00068,0.00365,0.00068,0.68377),(0.00088,0.00461,0.00088,0.64782),(0.00108,0.00553,0.00108,0.61722),(0.00129,0.00651,0.00129,0.58781),(0.00156,0.00765,0.00156,0.55665),(0.00192,0.00918,0.00192,0.51928),(0.00265,0.01201,0.00265,0.45964)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00087,0.04468,0.00087,0.08453),(0.00136,0.05362,0.00136,0.09993),(0.00176,0.05925,0.00176,0.10928),(0.00216,0.06394,0.00216,0.11683),(0.00259,0.06836,0.00259,0.12370),(0.00311,0.07293,0.00311,0.13055),(0.00385,0.07824,0.00385,0.13812),(0.00529,0.08629,0.00529,0.14858)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.83257,0.00098,0.00554,0.00098),(0.79399,0.00154,0.00841,0.00154),(0.76837,0.00198,0.01065,0.00198),(0.74611,0.00243,0.01281,0.00243),(0.72430,0.00291,0.01512,0.00291),(0.70070,0.00350,0.01784,0.00350),(0.67166,0.00433,0.02149,0.00433),(0.62349,0.00595,0.02829,0.00595)} {(0.83257,0.00098,0.00554,0.00098),(0.79399,0.00154,0.00841,0.00154),(0.76837,0.00198,0.01065,0.00198),(0.74611,0.00243,0.01281,0.00243),(0.72430,0.00291,0.01512,0.00291),(0.70070,0.00350,0.01784,0.00350),(0.67166,0.00433,0.02149,0.00433),(0.62349,0.00595,0.02829,0.00595)} {(0.00062,0.00011,0.74448,0.00011),(0.00093,0.00017,0.68877,0.00017),(0.00118,0.00022,0.65249,0.00022),(0.00142,0.00027,0.62145,0.00027),(0.00168,0.00032,0.59147,0.00032),(0.00198,0.00039,0.55954,0.00039),(0.00239,0.00048,0.52101,0.00048),(0.00314,0.00066,0.45899,0.00066)} ] + + + TEST alpha(ncats) = 10.00( 8), mode = MEDIAN 0.547134 0.715810 0.822782 0.918994 1.016968 1.127704 1.272412 1.578196 [6] P-matrix for branch length 0.100000 @@ -2924,61 +5848,237 @@ [6] CLV 7: [ {(0.00163,0.83210,0.00163,0.00902),(0.00269,0.78860,0.00269,0.01443),(0.00349,0.76275,0.00349,0.01827),(0.00427,0.74058,0.00427,0.02194),(0.00514,0.71899,0.00514,0.02585),(0.00619,0.69574,0.00619,0.03044),(0.00767,0.66707,0.00767,0.03663),(0.01115,0.61230,0.01115,0.05011)} {(0.00057,0.00010,0.75280,0.00010),(0.00092,0.00017,0.69054,0.00017),(0.00117,0.00022,0.65396,0.00022),(0.00141,0.00027,0.62285,0.00027),(0.00167,0.00032,0.59281,0.00032),(0.00197,0.00039,0.56075,0.00039),(0.00238,0.00048,0.52167,0.00048),(0.00328,0.00070,0.44854,0.00070)} {(0.01846,0.00144,0.00145,0.02615),(0.02314,0.00234,0.00237,0.03223),(0.02590,0.00299,0.00303,0.03569),(0.02825,0.00363,0.00368,0.03856),(0.03052,0.00432,0.00439,0.04126),(0.03294,0.00515,0.00524,0.04406),(0.03590,0.00628,0.00641,0.04735),(0.04140,0.00886,0.00907,0.05310)} {(0.00163,0.83210,0.00163,0.00902),(0.00269,0.78860,0.00269,0.01443),(0.00349,0.76275,0.00349,0.01827),(0.00427,0.74058,0.00427,0.02194),(0.00514,0.71899,0.00514,0.02585),(0.00619,0.69574,0.00619,0.03044),(0.00767,0.66707,0.00767,0.03663),(0.01115,0.61230,0.01115,0.05011)} {(0.00041,0.00226,0.00041,0.74771),(0.00067,0.00361,0.00067,0.68553),(0.00087,0.00457,0.00087,0.64927),(0.00107,0.00548,0.00107,0.61860),(0.00128,0.00646,0.00128,0.58913),(0.00155,0.00761,0.00155,0.55783),(0.00192,0.00916,0.00192,0.51991),(0.00279,0.01253,0.00279,0.44966)} {(0.00041,0.00226,0.00041,0.74771),(0.00067,0.00361,0.00067,0.68553),(0.00087,0.00457,0.00087,0.64927),(0.00107,0.00548,0.00107,0.61860),(0.00128,0.00646,0.00128,0.58913),(0.00155,0.00761,0.00155,0.55783),(0.00192,0.00916,0.00192,0.51991),(0.00279,0.01253,0.00279,0.44966)} {(0.00057,0.00010,0.75280,0.00010),(0.00092,0.00017,0.69054,0.00017),(0.00117,0.00022,0.65396,0.00022),(0.00141,0.00027,0.62285,0.00027),(0.00167,0.00032,0.59281,0.00032),(0.00197,0.00039,0.56075,0.00039),(0.00238,0.00048,0.52167,0.00048),(0.00328,0.00070,0.44854,0.00070)} {(0.00163,0.83210,0.00163,0.00902),(0.00269,0.78860,0.00269,0.01443),(0.00349,0.76275,0.00349,0.01827),(0.00427,0.74058,0.00427,0.02194),(0.00514,0.71899,0.00514,0.02585),(0.00619,0.69574,0.00619,0.03044),(0.00767,0.66707,0.00767,0.03663),(0.01115,0.61230,0.01115,0.05011)} {(0.03691,0.02758,0.00290,0.00287),(0.04629,0.03457,0.00473,0.00468),(0.05181,0.03869,0.00607,0.00599),(0.05651,0.04219,0.00737,0.00726),(0.06104,0.04558,0.00878,0.00864),(0.06589,0.04921,0.01048,0.01029),(0.07179,0.05364,0.01282,0.01257),(0.08281,0.06196,0.01815,0.01773)} {(0.83826,0.00091,0.00517,0.00091),(0.79523,0.00152,0.00831,0.00152),(0.76942,0.00196,0.01055,0.00196),(0.74712,0.00240,0.01271,0.00240),(0.72528,0.00289,0.01502,0.00289),(0.70160,0.00348,0.01774,0.00348),(0.67216,0.00431,0.02143,0.00431),(0.61518,0.00627,0.02955,0.00627)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.83826,0.00091,0.00517,0.00091),(0.79523,0.00152,0.00831,0.00152),(0.76942,0.00196,0.01055,0.00196),(0.74712,0.00240,0.01271,0.00240),(0.72528,0.00289,0.01502,0.00289),(0.70160,0.00348,0.01774,0.00348),(0.67216,0.00431,0.02143,0.00431),(0.61518,0.00627,0.02955,0.00627)} {(0.00041,0.00226,0.00041,0.74771),(0.00067,0.00361,0.00067,0.68553),(0.00087,0.00457,0.00087,0.64927),(0.00107,0.00548,0.00107,0.61860),(0.00128,0.00646,0.00128,0.58913),(0.00155,0.00761,0.00155,0.55783),(0.00192,0.00916,0.00192,0.51991),(0.00279,0.01253,0.00279,0.44966)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00081,0.04332,0.00081,0.08213),(0.00135,0.05334,0.00135,0.09946),(0.00174,0.05902,0.00174,0.10891),(0.00214,0.06373,0.00214,0.11650),(0.00257,0.06816,0.00257,0.12340),(0.00309,0.07276,0.00309,0.13030),(0.00383,0.07816,0.00383,0.13800),(0.00557,0.08758,0.00557,0.15011)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.83826,0.00091,0.00517,0.00091),(0.79523,0.00152,0.00831,0.00152),(0.76942,0.00196,0.01055,0.00196),(0.74712,0.00240,0.01271,0.00240),(0.72528,0.00289,0.01502,0.00289),(0.70160,0.00348,0.01774,0.00348),(0.67216,0.00431,0.02143,0.00431),(0.61518,0.00627,0.02955,0.00627)} {(0.83826,0.00091,0.00517,0.00091),(0.79523,0.00152,0.00831,0.00152),(0.76942,0.00196,0.01055,0.00196),(0.74712,0.00240,0.01271,0.00240),(0.72528,0.00289,0.01502,0.00289),(0.70160,0.00348,0.01774,0.00348),(0.67216,0.00431,0.02143,0.00431),(0.61518,0.00627,0.02955,0.00627)} {(0.00057,0.00010,0.75280,0.00010),(0.00092,0.00017,0.69054,0.00017),(0.00117,0.00022,0.65396,0.00022),(0.00141,0.00027,0.62285,0.00027),(0.00167,0.00032,0.59281,0.00032),(0.00197,0.00039,0.56075,0.00039),(0.00238,0.00048,0.52167,0.00048),(0.00328,0.00070,0.44854,0.00070)} ] - TEST alpha(ncats) = 50.00( 8) + TEST alpha(ncats) = 50.00( 8), mode = MEAN -0.780188 0.872612 0.925792 0.971309 1.015819 1.064247 1.125000 1.245033 +0.793403 0.874422 0.926988 0.972308 1.016674 1.064851 1.124726 1.226628 [7] P-matrix for branch length 0.100000 -+0.9386 +0.0292 +0.0176 +0.0146 -+0.0219 +0.9359 +0.0073 +0.0350 -+0.0528 +0.0292 +0.9035 +0.0146 -+0.0219 +0.0699 +0.0073 +0.9009 ++0.9376 +0.0297 +0.0179 +0.0148 ++0.0222 +0.9348 +0.0074 +0.0355 ++0.0536 +0.0297 +0.9019 +0.0148 ++0.0222 +0.0710 +0.0074 +0.8993 -+0.9318 +0.0325 +0.0195 +0.0162 -+0.0244 +0.9288 +0.0081 +0.0387 -+0.0585 +0.0325 +0.8927 +0.0162 -+0.0244 +0.0775 +0.0081 +0.8900 ++0.9316 +0.0326 +0.0195 +0.0163 ++0.0244 +0.9286 +0.0081 +0.0388 ++0.0586 +0.0326 +0.8925 +0.0163 ++0.0244 +0.0776 +0.0081 +0.8898 -+0.9278 +0.0344 +0.0206 +0.0172 ++0.9277 +0.0344 +0.0206 +0.0172 +0.0258 +0.9247 +0.0086 +0.0409 -+0.0618 +0.0344 +0.8866 +0.0172 -+0.0258 +0.0817 +0.0086 +0.8839 ++0.0619 +0.0344 +0.8865 +0.0172 ++0.0258 +0.0818 +0.0086 +0.8837 -+0.9245 +0.0360 +0.0215 +0.0180 -+0.0270 +0.9213 +0.0090 +0.0427 -+0.0645 +0.0360 +0.8815 +0.0180 -+0.0270 +0.0854 +0.0090 +0.8786 ++0.9244 +0.0360 +0.0215 +0.0180 ++0.0270 +0.9212 +0.0090 +0.0427 ++0.0646 +0.0360 +0.8813 +0.0180 ++0.0270 +0.0854 +0.0090 +0.8785 +0.9212 +0.0376 +0.0224 +0.0188 -+0.0282 +0.9180 +0.0094 +0.0444 -+0.0672 +0.0376 +0.8764 +0.0188 -+0.0282 +0.0889 +0.0094 +0.8736 ++0.0282 +0.9179 +0.0094 +0.0445 ++0.0673 +0.0376 +0.8763 +0.0188 ++0.0282 +0.0889 +0.0094 +0.8735 +0.9177 +0.0393 +0.0234 +0.0196 -+0.0294 +0.9144 +0.0098 +0.0463 -+0.0701 +0.0393 +0.8710 +0.0196 -+0.0294 +0.0927 +0.0098 +0.8681 ++0.0295 +0.9144 +0.0098 +0.0464 ++0.0701 +0.0393 +0.8709 +0.0196 ++0.0295 +0.0927 +0.0098 +0.8680 +0.9134 +0.0414 +0.0246 +0.0207 -+0.0310 +0.9099 +0.0103 +0.0487 -+0.0737 +0.0414 +0.8642 +0.0207 ++0.0310 +0.9100 +0.0103 +0.0487 ++0.0737 +0.0414 +0.8643 +0.0207 +0.0310 +0.0973 +0.0103 +0.8613 -+0.9048 +0.0455 +0.0269 +0.0228 -+0.0342 +0.9012 +0.0114 +0.0532 -+0.0807 +0.0455 +0.8510 +0.0228 -+0.0342 +0.1064 +0.0114 +0.8480 ++0.9061 +0.0449 +0.0265 +0.0225 ++0.0337 +0.9026 +0.0112 +0.0525 ++0.0796 +0.0449 +0.8530 +0.0225 ++0.0337 +0.1051 +0.0112 +0.8500 [7] P-matrix for branch length 0.200000 -+0.8829 +0.0562 +0.0327 +0.0281 -+0.0422 +0.8791 +0.0141 +0.0646 -+0.0982 +0.0562 +0.8175 +0.0281 -+0.0422 +0.1293 +0.0141 +0.8145 ++0.8811 +0.0571 +0.0332 +0.0286 ++0.0428 +0.8773 +0.0143 +0.0656 ++0.0996 +0.0571 +0.8147 +0.0286 ++0.0428 +0.1311 +0.0143 +0.8118 + ++0.8703 +0.0625 +0.0360 +0.0312 ++0.0468 +0.8664 +0.0156 +0.0711 ++0.1081 +0.0625 +0.7982 +0.0312 ++0.0468 +0.1422 +0.0156 +0.7954 + ++0.8633 +0.0659 +0.0378 +0.0329 ++0.0494 +0.8595 +0.0165 +0.0746 ++0.1135 +0.0659 +0.7876 +0.0329 ++0.0494 +0.1492 +0.0165 +0.7849 + ++0.8574 +0.0688 +0.0394 +0.0344 ++0.0516 +0.8536 +0.0172 +0.0775 ++0.1181 +0.0688 +0.7787 +0.0344 ++0.0516 +0.1551 +0.0172 +0.7761 -+0.8705 +0.0623 +0.0360 +0.0312 -+0.0468 +0.8667 +0.0156 +0.0710 -+0.1080 +0.0623 +0.7985 +0.0312 -+0.0468 +0.1419 +0.0156 +0.7957 ++0.8517 +0.0717 +0.0408 +0.0358 ++0.0537 +0.8480 +0.0179 +0.0804 ++0.1225 +0.0717 +0.7700 +0.0358 ++0.0537 +0.1607 +0.0179 +0.7676 + ++0.8455 +0.0747 +0.0424 +0.0374 ++0.0560 +0.8419 +0.0187 +0.0834 ++0.1272 +0.0747 +0.7607 +0.0374 ++0.0560 +0.1668 +0.0187 +0.7585 + ++0.8380 +0.0785 +0.0443 +0.0392 ++0.0589 +0.8345 +0.0196 +0.0870 ++0.1329 +0.0785 +0.7494 +0.0392 ++0.0589 +0.1741 +0.0196 +0.7474 + ++0.8254 +0.0848 +0.0474 +0.0424 ++0.0636 +0.8222 +0.0212 +0.0931 ++0.1423 +0.0848 +0.7305 +0.0424 ++0.0636 +0.1861 +0.0212 +0.7291 + + +[7] P-matrix for branch length 1.000000 ++0.5812 +0.2148 +0.0965 +0.1074 ++0.1611 +0.6006 +0.0537 +0.1846 ++0.2896 +0.2148 +0.3881 +0.1074 ++0.1611 +0.3692 +0.0537 +0.4160 + ++0.5568 +0.2289 +0.0999 +0.1144 ++0.1716 +0.5805 +0.0572 +0.1906 ++0.2997 +0.2289 +0.3570 +0.1144 ++0.1716 +0.3812 +0.0572 +0.3899 + ++0.5422 +0.2374 +0.1018 +0.1187 ++0.1780 +0.5687 +0.0593 +0.1939 ++0.3053 +0.2374 +0.3387 +0.1187 ++0.1780 +0.3878 +0.0593 +0.3748 + ++0.5303 +0.2444 +0.1032 +0.1222 ++0.1833 +0.5592 +0.0611 +0.1964 ++0.3095 +0.2444 +0.3240 +0.1222 ++0.1833 +0.3928 +0.0611 +0.3628 + ++0.5192 +0.2509 +0.1044 +0.1255 ++0.1882 +0.5505 +0.0627 +0.1986 ++0.3131 +0.2509 +0.3105 +0.1255 ++0.1882 +0.3972 +0.0627 +0.3519 + ++0.5079 +0.2577 +0.1055 +0.1289 ++0.1933 +0.5416 +0.0644 +0.2007 ++0.3166 +0.2577 +0.2968 +0.1289 ++0.1933 +0.4013 +0.0644 +0.3409 + ++0.4946 +0.2658 +0.1068 +0.1329 ++0.1993 +0.5313 +0.0664 +0.2029 ++0.3203 +0.2658 +0.2810 +0.1329 ++0.1993 +0.4058 +0.0664 +0.3285 + ++0.4740 +0.2784 +0.1084 +0.1392 ++0.2088 +0.5157 +0.0696 +0.2058 ++0.3252 +0.2784 +0.2572 +0.1392 ++0.2088 +0.4117 +0.0696 +0.3099 + + +[7] P-matrix for branch length 1.000000 ++0.5812 +0.2148 +0.0965 +0.1074 ++0.1611 +0.6006 +0.0537 +0.1846 ++0.2896 +0.2148 +0.3881 +0.1074 ++0.1611 +0.3692 +0.0537 +0.4160 + ++0.5568 +0.2289 +0.0999 +0.1144 ++0.1716 +0.5805 +0.0572 +0.1906 ++0.2997 +0.2289 +0.3570 +0.1144 ++0.1716 +0.3812 +0.0572 +0.3899 + ++0.5422 +0.2374 +0.1018 +0.1187 ++0.1780 +0.5687 +0.0593 +0.1939 ++0.3053 +0.2374 +0.3387 +0.1187 ++0.1780 +0.3878 +0.0593 +0.3748 + ++0.5303 +0.2444 +0.1032 +0.1222 ++0.1833 +0.5592 +0.0611 +0.1964 ++0.3095 +0.2444 +0.3240 +0.1222 ++0.1833 +0.3928 +0.0611 +0.3628 + ++0.5192 +0.2509 +0.1044 +0.1255 ++0.1882 +0.5505 +0.0627 +0.1986 ++0.3131 +0.2509 +0.3105 +0.1255 ++0.1882 +0.3972 +0.0627 +0.3519 + ++0.5079 +0.2577 +0.1055 +0.1289 ++0.1933 +0.5416 +0.0644 +0.2007 ++0.3166 +0.2577 +0.2968 +0.1289 ++0.1933 +0.4013 +0.0644 +0.3409 + ++0.4946 +0.2658 +0.1068 +0.1329 ++0.1993 +0.5313 +0.0664 +0.2029 ++0.3203 +0.2658 +0.2810 +0.1329 ++0.1993 +0.4058 +0.0664 +0.3285 + ++0.4740 +0.2784 +0.1084 +0.1392 ++0.2088 +0.5157 +0.0696 +0.2058 ++0.3252 +0.2784 +0.2572 +0.1392 ++0.2088 +0.4117 +0.0696 +0.3099 + + +[7] CLV 5: [ {(0.05195,0.09509,0.00732,0.11204),(0.05631,0.10219,0.00871,0.11975),(0.05906,0.10658,0.00965,0.12446),(0.06137,0.11025,0.01050,0.12836),(0.06360,0.11372,0.01135,0.13202),(0.06597,0.11738,0.01229,0.13584),(0.06884,0.12176,0.01351,0.14037),(0.07357,0.12879,0.01566,0.14755)} {(0.77640,0.00183,0.00992,0.00183),(0.75735,0.00219,0.01170,0.00219),(0.74531,0.00244,0.01289,0.00244),(0.73513,0.00266,0.01395,0.00266),(0.72535,0.00289,0.01501,0.00289),(0.71491,0.00314,0.01618,0.00314),(0.70222,0.00346,0.01766,0.00346),(0.68130,0.00404,0.02025,0.00404)} {(0.05032,0.03758,0.00569,0.00562),(0.05436,0.04059,0.00676,0.00666),(0.05688,0.04248,0.00748,0.00737),(0.05900,0.04406,0.00813,0.00800),(0.06103,0.04557,0.00878,0.00864),(0.06317,0.04718,0.00950,0.00935),(0.06576,0.04911,0.01043,0.01025),(0.06997,0.05227,0.01206,0.01184)} {(0.00326,0.76972,0.00326,0.01719),(0.00390,0.75073,0.00390,0.02022),(0.00434,0.73878,0.00434,0.02225),(0.00474,0.72871,0.00474,0.02405),(0.00514,0.71906,0.00514,0.02584),(0.00558,0.70879,0.00558,0.02781),(0.00616,0.69635,0.00616,0.03031),(0.00719,0.67593,0.00719,0.03465)} {(0.02516,0.00281,0.00284,0.03477),(0.02718,0.00333,0.00338,0.03726),(0.02844,0.00369,0.00374,0.03879),(0.02950,0.00400,0.00406,0.04006),(0.03052,0.00432,0.00439,0.04125),(0.03159,0.00467,0.00475,0.04250),(0.03288,0.00512,0.00521,0.04399),(0.03499,0.00592,0.00603,0.04636)} {(0.00163,0.05751,0.00163,0.10643),(0.00195,0.06160,0.00195,0.11309),(0.00217,0.06411,0.00217,0.11709),(0.00237,0.06619,0.00237,0.12035),(0.00257,0.06815,0.00257,0.12338),(0.00279,0.07020,0.00279,0.12650),(0.00308,0.07264,0.00308,0.13013),(0.00359,0.07652,0.00359,0.13571)} {(0.00110,0.00020,0.66379,0.00020),(0.00130,0.00024,0.63706,0.00024),(0.00143,0.00027,0.62034,0.00027),(0.00155,0.00030,0.60630,0.00030),(0.00167,0.00032,0.59290,0.00032),(0.00180,0.00035,0.57871,0.00035),(0.00196,0.00038,0.56158,0.00038),(0.00225,0.00045,0.53370,0.00045)} {(0.00326,0.76972,0.00326,0.01719),(0.00390,0.75073,0.00390,0.02022),(0.00434,0.73878,0.00434,0.02225),(0.00474,0.72871,0.00474,0.02405),(0.00514,0.71906,0.00514,0.02584),(0.00558,0.70879,0.00558,0.02781),(0.00616,0.69635,0.00616,0.03031),(0.00719,0.67593,0.00719,0.03465)} {(0.00082,0.00430,0.00082,0.65900),(0.00098,0.00505,0.00098,0.63259),(0.00109,0.00556,0.00109,0.61613),(0.00118,0.00601,0.00118,0.60235),(0.00128,0.00646,0.00128,0.58921),(0.00140,0.00695,0.00140,0.57534),(0.00154,0.00758,0.00154,0.55864),(0.00180,0.00866,0.00180,0.53156)} {(0.77640,0.00183,0.00992,0.00183),(0.75735,0.00219,0.01170,0.00219),(0.74531,0.00244,0.01289,0.00244),(0.73513,0.00266,0.01395,0.00266),(0.72535,0.00289,0.01501,0.00289),(0.71491,0.00314,0.01618,0.00314),(0.70222,0.00346,0.01766,0.00346),(0.68130,0.00404,0.02025,0.00404)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.77640,0.00183,0.00992,0.00183),(0.75735,0.00219,0.01170,0.00219),(0.74531,0.00244,0.01289,0.00244),(0.73513,0.00266,0.01395,0.00266),(0.72535,0.00289,0.01501,0.00289),(0.71491,0.00314,0.01618,0.00314),(0.70222,0.00346,0.01766,0.00346),(0.68130,0.00404,0.02025,0.00404)} {(0.00082,0.00430,0.00082,0.65900),(0.00098,0.00505,0.00098,0.63259),(0.00109,0.00556,0.00109,0.61613),(0.00118,0.00601,0.00118,0.60235),(0.00128,0.00646,0.00128,0.58921),(0.00140,0.00695,0.00140,0.57534),(0.00154,0.00758,0.00154,0.55864),(0.00180,0.00866,0.00180,0.53156)} {(0.00082,0.00430,0.00082,0.65900),(0.00098,0.00505,0.00098,0.63259),(0.00109,0.00556,0.00109,0.61613),(0.00118,0.00601,0.00118,0.60235),(0.00128,0.00646,0.00128,0.58921),(0.00140,0.00695,0.00140,0.57534),(0.00154,0.00758,0.00154,0.55864),(0.00180,0.00866,0.00180,0.53156)} {(0.00190,0.01253,0.04653,0.00187),(0.00225,0.01353,0.04986,0.00222),(0.00249,0.01416,0.05190,0.00246),(0.00271,0.01469,0.05359,0.00267),(0.00293,0.01519,0.05518,0.00288),(0.00317,0.01573,0.05684,0.00312),(0.00348,0.01637,0.05881,0.00342),(0.00402,0.01742,0.06193,0.00395)} {(0.00082,0.00430,0.00082,0.65900),(0.00098,0.00505,0.00098,0.63259),(0.00109,0.00556,0.00109,0.61613),(0.00118,0.00601,0.00118,0.60235),(0.00128,0.00646,0.00128,0.58921),(0.00140,0.00695,0.00140,0.57534),(0.00154,0.00758,0.00154,0.55864),(0.00180,0.00866,0.00180,0.53156)} {(0.05032,0.03758,0.00569,0.00562),(0.05436,0.04059,0.00676,0.00666),(0.05688,0.04248,0.00748,0.00737),(0.05900,0.04406,0.00813,0.00800),(0.06103,0.04557,0.00878,0.00864),(0.06317,0.04718,0.00950,0.00935),(0.06576,0.04911,0.01043,0.01025),(0.06997,0.05227,0.01206,0.01184)} {(0.02516,0.00281,0.00284,0.03477),(0.02718,0.00333,0.00338,0.03726),(0.02844,0.00369,0.00374,0.03879),(0.02950,0.00400,0.00406,0.04006),(0.03052,0.00432,0.00439,0.04125),(0.03159,0.00467,0.00475,0.04250),(0.03288,0.00512,0.00521,0.04399),(0.03499,0.00592,0.00603,0.04636)} {(0.00082,0.00430,0.00082,0.65900),(0.00098,0.00505,0.00098,0.63259),(0.00109,0.00556,0.00109,0.61613),(0.00118,0.00601,0.00118,0.60235),(0.00128,0.00646,0.00128,0.58921),(0.00140,0.00695,0.00140,0.57534),(0.00154,0.00758,0.00154,0.55864),(0.00180,0.00866,0.00180,0.53156)} ] +[7] CLV 6: [ {(0.04699,0.00403,0.00138,0.00466),(0.05039,0.00473,0.00177,0.00543),(0.05249,0.00520,0.00205,0.00595),(0.05423,0.00562,0.00230,0.00640),(0.05587,0.00603,0.00257,0.00684),(0.05758,0.00648,0.00288,0.00733),(0.05962,0.00706,0.00328,0.00795),(0.06287,0.00805,0.00403,0.00900)} {(0.02418,0.00027,0.04126,0.00027),(0.02545,0.00032,0.04386,0.00032),(0.02619,0.00036,0.04541,0.00036),(0.02677,0.00039,0.04667,0.00039),(0.02731,0.00042,0.04783,0.00042),(0.02784,0.00045,0.04901,0.00045),(0.02844,0.00050,0.05037,0.00050),(0.02932,0.00057,0.05243,0.00057)} {(0.04848,0.03649,0.00903,0.00888),(0.05220,0.03934,0.01065,0.01046),(0.05452,0.04111,0.01174,0.01152),(0.05645,0.04260,0.01271,0.01246),(0.05829,0.04402,0.01367,0.01340),(0.06023,0.04553,0.01475,0.01444),(0.06257,0.04734,0.01610,0.01575),(0.06634,0.05029,0.01847,0.01804)} {(0.00150,0.63193,0.00150,0.00920),(0.00178,0.60484,0.00178,0.01086),(0.00197,0.58807,0.00197,0.01197),(0.00215,0.57409,0.00215,0.01296),(0.00232,0.56084,0.00232,0.01394),(0.00251,0.54690,0.00251,0.01502),(0.00276,0.53021,0.00276,0.01639),(0.00321,0.50333,0.00321,0.01876)} {(0.02424,0.00444,0.00451,0.03205),(0.02610,0.00523,0.00532,0.03411),(0.02726,0.00576,0.00587,0.03535),(0.02823,0.00623,0.00635,0.03637),(0.02915,0.00670,0.00684,0.03732),(0.03012,0.00722,0.00737,0.03831),(0.03128,0.00788,0.00805,0.03946),(0.03317,0.00902,0.00924,0.04127)} {(0.00014,0.00378,0.00014,0.08105),(0.00018,0.00438,0.00018,0.08389),(0.00021,0.00478,0.00021,0.08540),(0.00023,0.00513,0.00023,0.08652),(0.00026,0.00548,0.00026,0.08745),(0.00029,0.00585,0.00029,0.08831),(0.00034,0.00632,0.00034,0.08915),(0.00042,0.00711,0.00042,0.09009)} {(0.00043,0.00007,0.48782,0.00007),(0.00049,0.00009,0.45390,0.00009),(0.00053,0.00009,0.43322,0.00009),(0.00057,0.00010,0.41618,0.00010),(0.00061,0.00011,0.40017,0.00011),(0.00064,0.00011,0.38353,0.00011),(0.00069,0.00012,0.36384,0.00012),(0.00077,0.00014,0.33275,0.00014)} {(0.00150,0.63193,0.00150,0.00920),(0.00178,0.60484,0.00178,0.01086),(0.00197,0.58807,0.00197,0.01197),(0.00215,0.57409,0.00215,0.01296),(0.00232,0.56084,0.00232,0.01394),(0.00251,0.54690,0.00251,0.01502),(0.00276,0.53021,0.00276,0.01639),(0.00321,0.50333,0.00321,0.01876)} {(0.00941,0.00118,0.00106,0.02540),(0.00991,0.00137,0.00123,0.02639),(0.01021,0.00150,0.00134,0.02693),(0.01045,0.00162,0.00144,0.02734),(0.01067,0.00173,0.00154,0.02769),(0.01090,0.00185,0.00164,0.02802),(0.01116,0.00201,0.00177,0.02837),(0.01156,0.00228,0.00199,0.02879)} {(0.02418,0.00027,0.04126,0.00027),(0.02545,0.00032,0.04386,0.00032),(0.02619,0.00036,0.04541,0.00036),(0.02677,0.00039,0.04667,0.00039),(0.02731,0.00042,0.04783,0.00042),(0.02784,0.00045,0.04901,0.00045),(0.02844,0.00050,0.05037,0.00050),(0.02932,0.00057,0.05243,0.00057)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.04159,0.01678,0.00289,0.00251),(0.04409,0.01794,0.00343,0.00294),(0.04559,0.01866,0.00380,0.00324),(0.04680,0.01926,0.00412,0.00350),(0.04792,0.01982,0.00445,0.00376),(0.04906,0.02041,0.00481,0.00404),(0.05038,0.02111,0.00527,0.00440),(0.05240,0.02223,0.00608,0.00503)} {(0.00030,0.00180,0.00030,0.48139),(0.00036,0.00208,0.00036,0.44804),(0.00039,0.00227,0.00039,0.42778),(0.00042,0.00243,0.00042,0.41113),(0.00045,0.00259,0.00045,0.39553),(0.00048,0.00276,0.00048,0.37933),(0.00052,0.00297,0.00052,0.36023),(0.00059,0.00333,0.00059,0.33015)} {(0.00030,0.00180,0.00030,0.48139),(0.00036,0.00208,0.00036,0.44804),(0.00039,0.00227,0.00039,0.42778),(0.00042,0.00243,0.00042,0.41113),(0.00045,0.00259,0.00045,0.39553),(0.00048,0.00276,0.00048,0.37933),(0.00052,0.00297,0.00052,0.36023),(0.00059,0.00333,0.00059,0.33015)} {(0.00017,0.01067,0.00243,0.00039),(0.00022,0.01136,0.00282,0.00050),(0.00026,0.01178,0.00308,0.00057),(0.00029,0.01212,0.00330,0.00064),(0.00033,0.01244,0.00352,0.00072),(0.00037,0.01278,0.00377,0.00080),(0.00042,0.01317,0.00407,0.00091),(0.00052,0.01378,0.00458,0.00112)} {(0.00030,0.00180,0.00030,0.48139),(0.00036,0.00208,0.00036,0.44804),(0.00039,0.00227,0.00039,0.42778),(0.00042,0.00243,0.00042,0.41113),(0.00045,0.00259,0.00045,0.39553),(0.00048,0.00276,0.00048,0.37933),(0.00052,0.00297,0.00052,0.36023),(0.00059,0.00333,0.00059,0.33015)} {(0.04272,0.00156,0.00090,0.00038),(0.04543,0.00184,0.00115,0.00049),(0.04707,0.00203,0.00133,0.00057),(0.04840,0.00220,0.00150,0.00064),(0.04965,0.00237,0.00168,0.00072),(0.05093,0.00255,0.00188,0.00081),(0.05243,0.00279,0.00214,0.00093),(0.05476,0.00320,0.00263,0.00115)} {(0.00138,0.00390,0.00026,0.00420),(0.00163,0.00453,0.00033,0.00485),(0.00180,0.00495,0.00039,0.00527),(0.00194,0.00532,0.00044,0.00564),(0.00209,0.00568,0.00049,0.00600),(0.00225,0.00608,0.00055,0.00639),(0.00245,0.00657,0.00063,0.00687),(0.00281,0.00742,0.00078,0.00768)} {(0.00030,0.00180,0.00030,0.48139),(0.00036,0.00208,0.00036,0.44804),(0.00039,0.00227,0.00039,0.42778),(0.00042,0.00243,0.00042,0.41113),(0.00045,0.00259,0.00045,0.39553),(0.00048,0.00276,0.00048,0.37933),(0.00052,0.00297,0.00052,0.36023),(0.00059,0.00333,0.00059,0.33015)} ] +[7] CLV 7: [ {(0.00326,0.76972,0.00326,0.01719),(0.00390,0.75073,0.00390,0.02022),(0.00434,0.73878,0.00434,0.02225),(0.00474,0.72871,0.00474,0.02405),(0.00514,0.71906,0.00514,0.02584),(0.00558,0.70879,0.00558,0.02781),(0.00616,0.69635,0.00616,0.03031),(0.00719,0.67593,0.00719,0.03465)} {(0.00110,0.00020,0.66379,0.00020),(0.00130,0.00024,0.63706,0.00024),(0.00143,0.00027,0.62034,0.00027),(0.00155,0.00030,0.60630,0.00030),(0.00167,0.00032,0.59290,0.00032),(0.00180,0.00035,0.57871,0.00035),(0.00196,0.00038,0.56158,0.00038),(0.00225,0.00045,0.53370,0.00045)} {(0.02516,0.00281,0.00284,0.03477),(0.02718,0.00333,0.00338,0.03726),(0.02844,0.00369,0.00374,0.03879),(0.02950,0.00400,0.00406,0.04006),(0.03052,0.00432,0.00439,0.04125),(0.03159,0.00467,0.00475,0.04250),(0.03288,0.00512,0.00521,0.04399),(0.03499,0.00592,0.00603,0.04636)} {(0.00326,0.76972,0.00326,0.01719),(0.00390,0.75073,0.00390,0.02022),(0.00434,0.73878,0.00434,0.02225),(0.00474,0.72871,0.00474,0.02405),(0.00514,0.71906,0.00514,0.02584),(0.00558,0.70879,0.00558,0.02781),(0.00616,0.69635,0.00616,0.03031),(0.00719,0.67593,0.00719,0.03465)} {(0.00082,0.00430,0.00082,0.65900),(0.00098,0.00505,0.00098,0.63259),(0.00109,0.00556,0.00109,0.61613),(0.00118,0.00601,0.00118,0.60235),(0.00128,0.00646,0.00128,0.58921),(0.00140,0.00695,0.00140,0.57534),(0.00154,0.00758,0.00154,0.55864),(0.00180,0.00866,0.00180,0.53156)} {(0.00082,0.00430,0.00082,0.65900),(0.00098,0.00505,0.00098,0.63259),(0.00109,0.00556,0.00109,0.61613),(0.00118,0.00601,0.00118,0.60235),(0.00128,0.00646,0.00128,0.58921),(0.00140,0.00695,0.00140,0.57534),(0.00154,0.00758,0.00154,0.55864),(0.00180,0.00866,0.00180,0.53156)} {(0.00110,0.00020,0.66379,0.00020),(0.00130,0.00024,0.63706,0.00024),(0.00143,0.00027,0.62034,0.00027),(0.00155,0.00030,0.60630,0.00030),(0.00167,0.00032,0.59290,0.00032),(0.00180,0.00035,0.57871,0.00035),(0.00196,0.00038,0.56158,0.00038),(0.00225,0.00045,0.53370,0.00045)} {(0.00326,0.76972,0.00326,0.01719),(0.00390,0.75073,0.00390,0.02022),(0.00434,0.73878,0.00434,0.02225),(0.00474,0.72871,0.00474,0.02405),(0.00514,0.71906,0.00514,0.02584),(0.00558,0.70879,0.00558,0.02781),(0.00616,0.69635,0.00616,0.03031),(0.00719,0.67593,0.00719,0.03465)} {(0.05032,0.03758,0.00569,0.00562),(0.05436,0.04059,0.00676,0.00666),(0.05688,0.04248,0.00748,0.00737),(0.05900,0.04406,0.00813,0.00800),(0.06103,0.04557,0.00878,0.00864),(0.06317,0.04718,0.00950,0.00935),(0.06576,0.04911,0.01043,0.01025),(0.06997,0.05227,0.01206,0.01184)} {(0.77640,0.00183,0.00992,0.00183),(0.75735,0.00219,0.01170,0.00219),(0.74531,0.00244,0.01289,0.00244),(0.73513,0.00266,0.01395,0.00266),(0.72535,0.00289,0.01501,0.00289),(0.71491,0.00314,0.01618,0.00314),(0.70222,0.00346,0.01766,0.00346),(0.68130,0.00404,0.02025,0.00404)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.77640,0.00183,0.00992,0.00183),(0.75735,0.00219,0.01170,0.00219),(0.74531,0.00244,0.01289,0.00244),(0.73513,0.00266,0.01395,0.00266),(0.72535,0.00289,0.01501,0.00289),(0.71491,0.00314,0.01618,0.00314),(0.70222,0.00346,0.01766,0.00346),(0.68130,0.00404,0.02025,0.00404)} {(0.00082,0.00430,0.00082,0.65900),(0.00098,0.00505,0.00098,0.63259),(0.00109,0.00556,0.00109,0.61613),(0.00118,0.00601,0.00118,0.60235),(0.00128,0.00646,0.00128,0.58921),(0.00140,0.00695,0.00140,0.57534),(0.00154,0.00758,0.00154,0.55864),(0.00180,0.00866,0.00180,0.53156)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00163,0.05751,0.00163,0.10643),(0.00195,0.06160,0.00195,0.11309),(0.00217,0.06411,0.00217,0.11709),(0.00237,0.06619,0.00237,0.12035),(0.00257,0.06815,0.00257,0.12338),(0.00279,0.07020,0.00279,0.12650),(0.00308,0.07264,0.00308,0.13013),(0.00359,0.07652,0.00359,0.13571)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.77640,0.00183,0.00992,0.00183),(0.75735,0.00219,0.01170,0.00219),(0.74531,0.00244,0.01289,0.00244),(0.73513,0.00266,0.01395,0.00266),(0.72535,0.00289,0.01501,0.00289),(0.71491,0.00314,0.01618,0.00314),(0.70222,0.00346,0.01766,0.00346),(0.68130,0.00404,0.02025,0.00404)} {(0.77640,0.00183,0.00992,0.00183),(0.75735,0.00219,0.01170,0.00219),(0.74531,0.00244,0.01289,0.00244),(0.73513,0.00266,0.01395,0.00266),(0.72535,0.00289,0.01501,0.00289),(0.71491,0.00314,0.01618,0.00314),(0.70222,0.00346,0.01766,0.00346),(0.68130,0.00404,0.02025,0.00404)} {(0.00110,0.00020,0.66379,0.00020),(0.00130,0.00024,0.63706,0.00024),(0.00143,0.00027,0.62034,0.00027),(0.00155,0.00030,0.60630,0.00030),(0.00167,0.00032,0.59290,0.00032),(0.00180,0.00035,0.57871,0.00035),(0.00196,0.00038,0.56158,0.00038),(0.00225,0.00045,0.53370,0.00045)} ] + + + TEST alpha(ncats) = 50.00( 8), mode = MEDIAN + +0.780188 0.872612 0.925792 0.971309 1.015819 1.064247 1.125000 1.245033 +[7] P-matrix for branch length 0.100000 ++0.9386 +0.0292 +0.0176 +0.0146 ++0.0219 +0.9359 +0.0073 +0.0350 ++0.0528 +0.0292 +0.9035 +0.0146 ++0.0219 +0.0699 +0.0073 +0.9009 + ++0.9318 +0.0325 +0.0195 +0.0162 ++0.0244 +0.9288 +0.0081 +0.0387 ++0.0585 +0.0325 +0.8927 +0.0162 ++0.0244 +0.0775 +0.0081 +0.8900 + ++0.9278 +0.0344 +0.0206 +0.0172 ++0.0258 +0.9247 +0.0086 +0.0409 ++0.0618 +0.0344 +0.8866 +0.0172 ++0.0258 +0.0817 +0.0086 +0.8839 + ++0.9245 +0.0360 +0.0215 +0.0180 ++0.0270 +0.9213 +0.0090 +0.0427 ++0.0645 +0.0360 +0.8815 +0.0180 ++0.0270 +0.0854 +0.0090 +0.8786 + ++0.9212 +0.0376 +0.0224 +0.0188 ++0.0282 +0.9180 +0.0094 +0.0444 ++0.0672 +0.0376 +0.8764 +0.0188 ++0.0282 +0.0889 +0.0094 +0.8736 + ++0.9177 +0.0393 +0.0234 +0.0196 ++0.0294 +0.9144 +0.0098 +0.0463 ++0.0701 +0.0393 +0.8710 +0.0196 ++0.0294 +0.0927 +0.0098 +0.8681 + ++0.9134 +0.0414 +0.0246 +0.0207 ++0.0310 +0.9099 +0.0103 +0.0487 ++0.0737 +0.0414 +0.8642 +0.0207 ++0.0310 +0.0973 +0.0103 +0.8613 + ++0.9048 +0.0455 +0.0269 +0.0228 ++0.0342 +0.9012 +0.0114 +0.0532 ++0.0807 +0.0455 +0.8510 +0.0228 ++0.0342 +0.1064 +0.0114 +0.8480 + + +[7] P-matrix for branch length 0.200000 ++0.8829 +0.0562 +0.0327 +0.0281 ++0.0422 +0.8791 +0.0141 +0.0646 ++0.0982 +0.0562 +0.8175 +0.0281 ++0.0422 +0.1293 +0.0141 +0.8145 + ++0.8705 +0.0623 +0.0360 +0.0312 ++0.0468 +0.8667 +0.0156 +0.0710 ++0.1080 +0.0623 +0.7985 +0.0312 ++0.0468 +0.1419 +0.0156 +0.7957 +0.8635 +0.0658 +0.0378 +0.0329 +0.0494 +0.8597 +0.0165 +0.0745 @@ -3100,7 +6200,183 @@ [7] CLV 7: [ {(0.00316,0.77289,0.00316,0.01671),(0.00389,0.75114,0.00389,0.02015),(0.00433,0.73905,0.00433,0.02221),(0.00473,0.72893,0.00473,0.02401),(0.00513,0.71924,0.00513,0.02580),(0.00558,0.70892,0.00558,0.02779),(0.00616,0.69629,0.00616,0.03032),(0.00738,0.67235,0.00738,0.03544)} {(0.00107,0.00020,0.66827,0.00020),(0.00130,0.00024,0.63764,0.00024),(0.00143,0.00027,0.62071,0.00027),(0.00155,0.00030,0.60661,0.00030),(0.00167,0.00032,0.59315,0.00032),(0.00180,0.00035,0.57888,0.00035),(0.00196,0.00039,0.56151,0.00039),(0.00230,0.00046,0.52883,0.00046)} {(0.02482,0.00273,0.00276,0.03435),(0.02714,0.00332,0.00337,0.03721),(0.02841,0.00368,0.00373,0.03876),(0.02948,0.00399,0.00406,0.04003),(0.03050,0.00431,0.00438,0.04123),(0.03157,0.00467,0.00475,0.04249),(0.03289,0.00513,0.00522,0.04400),(0.03536,0.00606,0.00618,0.04676)} {(0.00316,0.77289,0.00316,0.01671),(0.00389,0.75114,0.00389,0.02015),(0.00433,0.73905,0.00433,0.02221),(0.00473,0.72893,0.00473,0.02401),(0.00513,0.71924,0.00513,0.02580),(0.00558,0.70892,0.00558,0.02779),(0.00616,0.69629,0.00616,0.03032),(0.00738,0.67235,0.00738,0.03544)} {(0.00079,0.00418,0.00079,0.66343),(0.00097,0.00504,0.00097,0.63316),(0.00108,0.00555,0.00108,0.61650),(0.00118,0.00600,0.00118,0.60265),(0.00128,0.00645,0.00128,0.58946),(0.00139,0.00695,0.00139,0.57551),(0.00154,0.00758,0.00154,0.55857),(0.00184,0.00886,0.00184,0.52684)} {(0.00079,0.00418,0.00079,0.66343),(0.00097,0.00504,0.00097,0.63316),(0.00108,0.00555,0.00108,0.61650),(0.00118,0.00600,0.00118,0.60265),(0.00128,0.00645,0.00128,0.58946),(0.00139,0.00695,0.00139,0.57551),(0.00154,0.00758,0.00154,0.55857),(0.00184,0.00886,0.00184,0.52684)} {(0.00107,0.00020,0.66827,0.00020),(0.00130,0.00024,0.63764,0.00024),(0.00143,0.00027,0.62071,0.00027),(0.00155,0.00030,0.60661,0.00030),(0.00167,0.00032,0.59315,0.00032),(0.00180,0.00035,0.57888,0.00035),(0.00196,0.00039,0.56151,0.00039),(0.00230,0.00046,0.52883,0.00046)} {(0.00316,0.77289,0.00316,0.01671),(0.00389,0.75114,0.00389,0.02015),(0.00433,0.73905,0.00433,0.02221),(0.00473,0.72893,0.00473,0.02401),(0.00513,0.71924,0.00513,0.02580),(0.00558,0.70892,0.00558,0.02779),(0.00616,0.69629,0.00616,0.03032),(0.00738,0.67235,0.00738,0.03544)} {(0.04965,0.03708,0.00552,0.00545),(0.05427,0.04052,0.00673,0.00664),(0.05683,0.04243,0.00747,0.00736),(0.05896,0.04403,0.00811,0.00799),(0.06099,0.04554,0.00877,0.00863),(0.06315,0.04716,0.00949,0.00934),(0.06577,0.04912,0.01043,0.01025),(0.07071,0.05283,0.01236,0.01213)} {(0.77956,0.00178,0.00964,0.00178),(0.75776,0.00219,0.01166,0.00219),(0.74558,0.00244,0.01287,0.00244),(0.73536,0.00266,0.01393,0.00266),(0.72554,0.00288,0.01499,0.00288),(0.71504,0.00314,0.01616,0.00314),(0.70216,0.00347,0.01767,0.00347),(0.67761,0.00415,0.02072,0.00415)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.77956,0.00178,0.00964,0.00178),(0.75776,0.00219,0.01166,0.00219),(0.74558,0.00244,0.01287,0.00244),(0.73536,0.00266,0.01393,0.00266),(0.72554,0.00288,0.01499,0.00288),(0.71504,0.00314,0.01616,0.00314),(0.70216,0.00347,0.01767,0.00347),(0.67761,0.00415,0.02072,0.00415)} {(0.00079,0.00418,0.00079,0.66343),(0.00097,0.00504,0.00097,0.63316),(0.00108,0.00555,0.00108,0.61650),(0.00118,0.00600,0.00118,0.60265),(0.00128,0.00645,0.00128,0.58946),(0.00139,0.00695,0.00139,0.57551),(0.00154,0.00758,0.00154,0.55857),(0.00184,0.00886,0.00184,0.52684)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00158,0.05682,0.00158,0.10528),(0.00194,0.06151,0.00194,0.11294),(0.00217,0.06405,0.00217,0.11700),(0.00236,0.06614,0.00236,0.12028),(0.00256,0.06811,0.00256,0.12333),(0.00279,0.07018,0.00279,0.12646),(0.00308,0.07265,0.00308,0.13014),(0.00369,0.07718,0.00369,0.13665)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.77956,0.00178,0.00964,0.00178),(0.75776,0.00219,0.01166,0.00219),(0.74558,0.00244,0.01287,0.00244),(0.73536,0.00266,0.01393,0.00266),(0.72554,0.00288,0.01499,0.00288),(0.71504,0.00314,0.01616,0.00314),(0.70216,0.00347,0.01767,0.00347),(0.67761,0.00415,0.02072,0.00415)} {(0.77956,0.00178,0.00964,0.00178),(0.75776,0.00219,0.01166,0.00219),(0.74558,0.00244,0.01287,0.00244),(0.73536,0.00266,0.01393,0.00266),(0.72554,0.00288,0.01499,0.00288),(0.71504,0.00314,0.01616,0.00314),(0.70216,0.00347,0.01767,0.00347),(0.67761,0.00415,0.02072,0.00415)} {(0.00107,0.00020,0.66827,0.00020),(0.00130,0.00024,0.63764,0.00024),(0.00143,0.00027,0.62071,0.00027),(0.00155,0.00030,0.60661,0.00030),(0.00167,0.00032,0.59315,0.00032),(0.00180,0.00035,0.57888,0.00035),(0.00196,0.00039,0.56151,0.00039),(0.00230,0.00046,0.52883,0.00046)} ] - TEST alpha(ncats) = 100.00( 8) + TEST alpha(ncats) = 100.00( 8), mode = MEAN + +0.851718 0.911181 0.949150 0.981537 1.012954 1.046770 1.088392 1.158298 +[8] P-matrix for branch length 0.100000 ++0.9333 +0.0317 +0.0191 +0.0159 ++0.0238 +0.9304 +0.0079 +0.0379 ++0.0572 +0.0317 +0.8952 +0.0159 ++0.0238 +0.0758 +0.0079 +0.8925 + ++0.9289 +0.0339 +0.0203 +0.0169 ++0.0254 +0.9259 +0.0085 +0.0403 ++0.0609 +0.0339 +0.8883 +0.0169 ++0.0254 +0.0806 +0.0085 +0.8856 + ++0.9261 +0.0352 +0.0211 +0.0176 ++0.0264 +0.9230 +0.0088 +0.0418 ++0.0632 +0.0352 +0.8840 +0.0176 ++0.0264 +0.0836 +0.0088 +0.8812 + ++0.9237 +0.0364 +0.0217 +0.0182 ++0.0273 +0.9206 +0.0091 +0.0431 ++0.0652 +0.0364 +0.8803 +0.0182 ++0.0273 +0.0862 +0.0091 +0.8775 + ++0.9215 +0.0375 +0.0223 +0.0187 ++0.0281 +0.9182 +0.0094 +0.0443 ++0.0670 +0.0375 +0.8768 +0.0187 ++0.0281 +0.0886 +0.0094 +0.8739 + ++0.9190 +0.0387 +0.0230 +0.0193 ++0.0290 +0.9157 +0.0097 +0.0456 ++0.0691 +0.0387 +0.8729 +0.0193 ++0.0290 +0.0913 +0.0097 +0.8701 + ++0.9160 +0.0401 +0.0238 +0.0201 ++0.0301 +0.9126 +0.0100 +0.0473 ++0.0715 +0.0401 +0.8683 +0.0201 ++0.0301 +0.0945 +0.0100 +0.8654 + ++0.9110 +0.0425 +0.0252 +0.0213 ++0.0319 +0.9075 +0.0106 +0.0499 ++0.0756 +0.0425 +0.8605 +0.0213 ++0.0319 +0.0999 +0.0106 +0.8576 + + +[8] P-matrix for branch length 0.200000 ++0.8733 +0.0610 +0.0353 +0.0305 ++0.0457 +0.8695 +0.0152 +0.0696 ++0.1058 +0.0610 +0.8028 +0.0305 ++0.0457 +0.1391 +0.0152 +0.7999 + ++0.8654 +0.0649 +0.0373 +0.0324 ++0.0486 +0.8616 +0.0162 +0.0735 ++0.1119 +0.0649 +0.7908 +0.0324 ++0.0486 +0.1471 +0.0162 +0.7880 + ++0.8604 +0.0673 +0.0386 +0.0337 ++0.0505 +0.8566 +0.0168 +0.0760 ++0.1158 +0.0673 +0.7832 +0.0337 ++0.0505 +0.1521 +0.0168 +0.7806 + ++0.8562 +0.0694 +0.0397 +0.0347 ++0.0521 +0.8525 +0.0174 +0.0781 ++0.1190 +0.0694 +0.7768 +0.0347 ++0.0521 +0.1563 +0.0174 +0.7743 + ++0.8522 +0.0714 +0.0407 +0.0357 ++0.0536 +0.8484 +0.0179 +0.0801 ++0.1221 +0.0714 +0.7707 +0.0357 ++0.0536 +0.1603 +0.0179 +0.7683 + ++0.8478 +0.0736 +0.0418 +0.0368 ++0.0552 +0.8442 +0.0184 +0.0823 ++0.1254 +0.0736 +0.7642 +0.0368 ++0.0552 +0.1645 +0.0184 +0.7619 + ++0.8425 +0.0762 +0.0432 +0.0381 ++0.0571 +0.8390 +0.0190 +0.0848 ++0.1295 +0.0762 +0.7562 +0.0381 ++0.0571 +0.1697 +0.0190 +0.7541 + ++0.8338 +0.0806 +0.0453 +0.0403 ++0.0604 +0.8304 +0.0201 +0.0891 ++0.1360 +0.0806 +0.7431 +0.0403 ++0.0604 +0.1781 +0.0201 +0.7413 + + +[8] P-matrix for branch length 1.000000 ++0.5634 +0.2250 +0.0990 +0.1125 ++0.1688 +0.5859 +0.0563 +0.1890 ++0.2971 +0.2250 +0.3653 +0.1125 ++0.1688 +0.3781 +0.0563 +0.3969 + ++0.5465 +0.2349 +0.1012 +0.1174 ++0.1761 +0.5722 +0.0587 +0.1930 ++0.3037 +0.2349 +0.3440 +0.1174 ++0.1761 +0.3859 +0.0587 +0.3792 + ++0.5363 +0.2408 +0.1025 +0.1204 ++0.1806 +0.5640 +0.0602 +0.1952 ++0.3074 +0.2408 +0.3314 +0.1204 ++0.1806 +0.3904 +0.0602 +0.3688 + ++0.5279 +0.2458 +0.1034 +0.1229 ++0.1843 +0.5573 +0.0614 +0.1969 ++0.3103 +0.2458 +0.3211 +0.1229 ++0.1843 +0.3938 +0.0614 +0.3605 + ++0.5201 +0.2504 +0.1043 +0.1252 ++0.1878 +0.5512 +0.0626 +0.1984 ++0.3128 +0.2504 +0.3116 +0.1252 ++0.1878 +0.3968 +0.0626 +0.3528 + ++0.5120 +0.2552 +0.1051 +0.1276 ++0.1914 +0.5449 +0.0638 +0.1999 ++0.3153 +0.2552 +0.3018 +0.1276 ++0.1914 +0.3998 +0.0638 +0.3449 + ++0.5025 +0.2610 +0.1060 +0.1305 ++0.1957 +0.5375 +0.0652 +0.2016 ++0.3181 +0.2610 +0.2904 +0.1305 ++0.1957 +0.4032 +0.0652 +0.3359 + ++0.4875 +0.2701 +0.1074 +0.1350 ++0.2026 +0.5260 +0.0675 +0.2040 ++0.3221 +0.2701 +0.2728 +0.1350 ++0.2026 +0.4079 +0.0675 +0.3220 + + +[8] P-matrix for branch length 1.000000 ++0.5634 +0.2250 +0.0990 +0.1125 ++0.1688 +0.5859 +0.0563 +0.1890 ++0.2971 +0.2250 +0.3653 +0.1125 ++0.1688 +0.3781 +0.0563 +0.3969 + ++0.5465 +0.2349 +0.1012 +0.1174 ++0.1761 +0.5722 +0.0587 +0.1930 ++0.3037 +0.2349 +0.3440 +0.1174 ++0.1761 +0.3859 +0.0587 +0.3792 + ++0.5363 +0.2408 +0.1025 +0.1204 ++0.1806 +0.5640 +0.0602 +0.1952 ++0.3074 +0.2408 +0.3314 +0.1204 ++0.1806 +0.3904 +0.0602 +0.3688 + ++0.5279 +0.2458 +0.1034 +0.1229 ++0.1843 +0.5573 +0.0614 +0.1969 ++0.3103 +0.2458 +0.3211 +0.1229 ++0.1843 +0.3938 +0.0614 +0.3605 + ++0.5201 +0.2504 +0.1043 +0.1252 ++0.1878 +0.5512 +0.0626 +0.1984 ++0.3128 +0.2504 +0.3116 +0.1252 ++0.1878 +0.3968 +0.0626 +0.3528 + ++0.5120 +0.2552 +0.1051 +0.1276 ++0.1914 +0.5449 +0.0638 +0.1999 ++0.3153 +0.2552 +0.3018 +0.1276 ++0.1914 +0.3998 +0.0638 +0.3449 + ++0.5025 +0.2610 +0.1060 +0.1305 ++0.1957 +0.5375 +0.0652 +0.2016 ++0.3181 +0.2610 +0.2904 +0.1305 ++0.1957 +0.4032 +0.0652 +0.3359 + ++0.4875 +0.2701 +0.1074 +0.1350 ++0.2026 +0.5260 +0.0675 +0.2040 ++0.3221 +0.2701 +0.2728 +0.1350 ++0.2026 +0.4079 +0.0675 +0.3220 + + +[8] CLV 5: [ {(0.05510,0.10024,0.00831,0.11764),(0.05824,0.10528,0.00936,0.12307),(0.06019,0.10839,0.01006,0.12639),(0.06184,0.11098,0.01067,0.12913),(0.06341,0.11344,0.01127,0.13172),(0.06508,0.11602,0.01194,0.13443),(0.06711,0.11912,0.01277,0.13765),(0.07042,0.12413,0.01420,0.14281)} {(0.76262,0.00209,0.01119,0.00209),(0.74890,0.00237,0.01253,0.00237),(0.74031,0.00255,0.01341,0.00255),(0.73308,0.00271,0.01417,0.00271),(0.72616,0.00287,0.01492,0.00287),(0.71881,0.00304,0.01574,0.00304),(0.70989,0.00327,0.01676,0.00327),(0.69523,0.00365,0.01851,0.00365)} {(0.05325,0.03976,0.00645,0.00636),(0.05613,0.04191,0.00726,0.00716),(0.05793,0.04326,0.00780,0.00768),(0.05943,0.04438,0.00826,0.00813),(0.06086,0.04545,0.00872,0.00859),(0.06238,0.04658,0.00923,0.00908),(0.06420,0.04795,0.00986,0.00970),(0.06718,0.05017,0.01096,0.01076)} {(0.00372,0.75598,0.00372,0.01935),(0.00421,0.74234,0.00421,0.02163),(0.00453,0.73383,0.00453,0.02313),(0.00482,0.72669,0.00482,0.02442),(0.00510,0.71986,0.00510,0.02569),(0.00541,0.71262,0.00541,0.02707),(0.00581,0.70386,0.00581,0.02879),(0.00649,0.68952,0.00649,0.03173)} {(0.02662,0.00318,0.00322,0.03658),(0.02807,0.00358,0.00363,0.03834),(0.02896,0.00384,0.00390,0.03942),(0.02972,0.00407,0.00413,0.04031),(0.03043,0.00429,0.00436,0.04116),(0.03119,0.00454,0.00461,0.04204),(0.03210,0.00485,0.00493,0.04310),(0.03359,0.00538,0.00548,0.04479)} {(0.00186,0.06048,0.00186,0.11128),(0.00210,0.06336,0.00210,0.11591),(0.00227,0.06514,0.00227,0.11871),(0.00241,0.06660,0.00241,0.12100),(0.00255,0.06799,0.00255,0.12314),(0.00271,0.06944,0.00271,0.12535),(0.00290,0.07118,0.00290,0.12796),(0.00325,0.07396,0.00325,0.13205)} {(0.00124,0.00023,0.64443,0.00023),(0.00139,0.00026,0.62531,0.00026),(0.00149,0.00028,0.61343,0.00028),(0.00157,0.00030,0.60349,0.00030),(0.00166,0.00032,0.59401,0.00032),(0.00175,0.00034,0.58399,0.00034),(0.00186,0.00036,0.57191,0.00036),(0.00206,0.00041,0.55223,0.00041)} {(0.00372,0.75598,0.00372,0.01935),(0.00421,0.74234,0.00421,0.02163),(0.00453,0.73383,0.00453,0.02313),(0.00482,0.72669,0.00482,0.02442),(0.00510,0.71986,0.00510,0.02569),(0.00541,0.71262,0.00541,0.02707),(0.00581,0.70386,0.00581,0.02879),(0.00649,0.68952,0.00649,0.03173)} {(0.00093,0.00484,0.00093,0.63986),(0.00105,0.00541,0.00105,0.62102),(0.00113,0.00578,0.00113,0.60934),(0.00120,0.00610,0.00120,0.59958),(0.00128,0.00642,0.00128,0.59030),(0.00135,0.00677,0.00135,0.58050),(0.00145,0.00720,0.00145,0.56870),(0.00162,0.00793,0.00162,0.54954)} {(0.76262,0.00209,0.01119,0.00209),(0.74890,0.00237,0.01253,0.00237),(0.74031,0.00255,0.01341,0.00255),(0.73308,0.00271,0.01417,0.00271),(0.72616,0.00287,0.01492,0.00287),(0.71881,0.00304,0.01574,0.00304),(0.70989,0.00327,0.01676,0.00327),(0.69523,0.00365,0.01851,0.00365)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.76262,0.00209,0.01119,0.00209),(0.74890,0.00237,0.01253,0.00237),(0.74031,0.00255,0.01341,0.00255),(0.73308,0.00271,0.01417,0.00271),(0.72616,0.00287,0.01492,0.00287),(0.71881,0.00304,0.01574,0.00304),(0.70989,0.00327,0.01676,0.00327),(0.69523,0.00365,0.01851,0.00365)} {(0.00093,0.00484,0.00093,0.63986),(0.00105,0.00541,0.00105,0.62102),(0.00113,0.00578,0.00113,0.60934),(0.00120,0.00610,0.00120,0.59958),(0.00128,0.00642,0.00128,0.59030),(0.00135,0.00677,0.00135,0.58050),(0.00145,0.00720,0.00145,0.56870),(0.00162,0.00793,0.00162,0.54954)} {(0.00093,0.00484,0.00093,0.63986),(0.00105,0.00541,0.00105,0.62102),(0.00113,0.00578,0.00113,0.60934),(0.00120,0.00610,0.00120,0.59958),(0.00128,0.00642,0.00128,0.59030),(0.00135,0.00677,0.00135,0.58050),(0.00145,0.00720,0.00145,0.56870),(0.00162,0.00793,0.00162,0.54954)} {(0.00215,0.01325,0.04895,0.00212),(0.00242,0.01397,0.05129,0.00239),(0.00260,0.01442,0.05273,0.00256),(0.00275,0.01479,0.05392,0.00271),(0.00291,0.01515,0.05505,0.00286),(0.00308,0.01553,0.05622,0.00303),(0.00329,0.01598,0.05763,0.00323),(0.00365,0.01672,0.05987,0.00359)} {(0.00093,0.00484,0.00093,0.63986),(0.00105,0.00541,0.00105,0.62102),(0.00113,0.00578,0.00113,0.60934),(0.00120,0.00610,0.00120,0.59958),(0.00128,0.00642,0.00128,0.59030),(0.00135,0.00677,0.00135,0.58050),(0.00145,0.00720,0.00145,0.56870),(0.00162,0.00793,0.00162,0.54954)} {(0.05325,0.03976,0.00645,0.00636),(0.05613,0.04191,0.00726,0.00716),(0.05793,0.04326,0.00780,0.00768),(0.05943,0.04438,0.00826,0.00813),(0.06086,0.04545,0.00872,0.00859),(0.06238,0.04658,0.00923,0.00908),(0.06420,0.04795,0.00986,0.00970),(0.06718,0.05017,0.01096,0.01076)} {(0.02662,0.00318,0.00322,0.03658),(0.02807,0.00358,0.00363,0.03834),(0.02896,0.00384,0.00390,0.03942),(0.02972,0.00407,0.00413,0.04031),(0.03043,0.00429,0.00436,0.04116),(0.03119,0.00454,0.00461,0.04204),(0.03210,0.00485,0.00493,0.04310),(0.03359,0.00538,0.00548,0.04479)} {(0.00093,0.00484,0.00093,0.63986),(0.00105,0.00541,0.00105,0.62102),(0.00113,0.00578,0.00113,0.60934),(0.00120,0.00610,0.00120,0.59958),(0.00128,0.00642,0.00128,0.59030),(0.00135,0.00677,0.00135,0.58050),(0.00145,0.00720,0.00145,0.56870),(0.00162,0.00793,0.00162,0.54954)} ] +[8] CLV 6: [ {(0.04946,0.00453,0.00165,0.00521),(0.05187,0.00506,0.00196,0.00579),(0.05335,0.00540,0.00217,0.00617),(0.05457,0.00570,0.00236,0.00649),(0.05573,0.00599,0.00255,0.00681),(0.05695,0.00631,0.00276,0.00715),(0.05840,0.00671,0.00303,0.00757),(0.06073,0.00738,0.00352,0.00829)} {(0.02511,0.00031,0.04316,0.00031),(0.02597,0.00035,0.04495,0.00035),(0.02648,0.00037,0.04603,0.00037),(0.02689,0.00039,0.04691,0.00039),(0.02726,0.00042,0.04773,0.00042),(0.02765,0.00044,0.04857,0.00044),(0.02808,0.00047,0.04956,0.00047),(0.02875,0.00052,0.05109,0.00052)} {(0.05118,0.03855,0.01018,0.01001),(0.05383,0.04058,0.01141,0.01120),(0.05547,0.04184,0.01221,0.01198),(0.05684,0.04290,0.01291,0.01266),(0.05814,0.04390,0.01359,0.01332),(0.05951,0.04497,0.01434,0.01405),(0.06116,0.04625,0.01528,0.01495),(0.06384,0.04833,0.01688,0.01650)} {(0.00170,0.61227,0.00170,0.01039),(0.00191,0.59304,0.00191,0.01164),(0.00206,0.58118,0.00206,0.01245),(0.00218,0.57130,0.00218,0.01316),(0.00230,0.56193,0.00230,0.01386),(0.00244,0.55207,0.00244,0.01461),(0.00261,0.54025,0.00261,0.01556),(0.00291,0.52114,0.00291,0.01716)} {(0.02559,0.00500,0.00509,0.03355),(0.02692,0.00560,0.00570,0.03498),(0.02774,0.00599,0.00611,0.03585),(0.02842,0.00633,0.00645,0.03657),(0.02907,0.00666,0.00680,0.03724),(0.02976,0.00702,0.00717,0.03794),(0.03058,0.00748,0.00764,0.03877),(0.03192,0.00825,0.00844,0.04008)} {(0.00017,0.00421,0.00017,0.08316),(0.00020,0.00466,0.00020,0.08497),(0.00022,0.00495,0.00022,0.08597),(0.00024,0.00520,0.00024,0.08672),(0.00026,0.00545,0.00026,0.08738),(0.00028,0.00571,0.00028,0.08800),(0.00031,0.00603,0.00031,0.08866),(0.00036,0.00658,0.00036,0.08952)} {(0.00047,0.00008,0.46315,0.00008),(0.00052,0.00009,0.43933,0.00009),(0.00055,0.00010,0.42479,0.00010),(0.00058,0.00010,0.41279,0.00010),(0.00060,0.00011,0.40149,0.00011),(0.00063,0.00011,0.38969,0.00011),(0.00066,0.00012,0.37566,0.00012),(0.00072,0.00013,0.35327,0.00013)} {(0.00170,0.61227,0.00170,0.01039),(0.00191,0.59304,0.00191,0.01164),(0.00206,0.58118,0.00206,0.01245),(0.00218,0.57130,0.00218,0.01316),(0.00230,0.56193,0.00230,0.01386),(0.00244,0.55207,0.00244,0.01461),(0.00261,0.54025,0.00261,0.01556),(0.00291,0.52114,0.00291,0.01716)} {(0.00978,0.00132,0.00118,0.02613),(0.01012,0.00146,0.00131,0.02678),(0.01033,0.00156,0.00139,0.02714),(0.01050,0.00164,0.00146,0.02742),(0.01065,0.00172,0.00153,0.02767),(0.01081,0.00181,0.00160,0.02791),(0.01100,0.00191,0.00169,0.02817),(0.01130,0.00210,0.00184,0.02853)} {(0.02511,0.00031,0.04316,0.00031),(0.02597,0.00035,0.04495,0.00035),(0.02648,0.00037,0.04603,0.00037),(0.02689,0.00039,0.04691,0.00039),(0.02726,0.00042,0.04773,0.00042),(0.02765,0.00044,0.04857,0.00044),(0.02808,0.00047,0.04956,0.00047),(0.02875,0.00052,0.05109,0.00052)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.04342,0.01763,0.00328,0.00282),(0.04515,0.01845,0.00369,0.00315),(0.04619,0.01896,0.00396,0.00337),(0.04704,0.01938,0.00419,0.00355),(0.04783,0.01977,0.00442,0.00374),(0.04864,0.02019,0.00468,0.00393),(0.04959,0.02069,0.00499,0.00418),(0.05108,0.02149,0.00554,0.00461)} {(0.00034,0.00200,0.00034,0.45712),(0.00038,0.00221,0.00038,0.43376),(0.00040,0.00235,0.00040,0.41955),(0.00043,0.00246,0.00043,0.40783),(0.00045,0.00257,0.00045,0.39681),(0.00047,0.00269,0.00047,0.38532),(0.00050,0.00284,0.00050,0.37169),(0.00055,0.00309,0.00055,0.34999)} {(0.00034,0.00200,0.00034,0.45712),(0.00038,0.00221,0.00038,0.43376),(0.00040,0.00235,0.00040,0.41955),(0.00043,0.00246,0.00043,0.40783),(0.00045,0.00257,0.00045,0.39681),(0.00047,0.00269,0.00047,0.38532),(0.00050,0.00284,0.00050,0.37169),(0.00055,0.00309,0.00055,0.34999)} {(0.00021,0.01117,0.00271,0.00046),(0.00025,0.01166,0.00300,0.00055),(0.00027,0.01195,0.00319,0.00061),(0.00030,0.01219,0.00335,0.00066),(0.00032,0.01242,0.00351,0.00071),(0.00035,0.01265,0.00368,0.00077),(0.00039,0.01293,0.00388,0.00085),(0.00045,0.01338,0.00424,0.00098)} {(0.00034,0.00200,0.00034,0.45712),(0.00038,0.00221,0.00038,0.43376),(0.00040,0.00235,0.00040,0.41955),(0.00043,0.00246,0.00043,0.40783),(0.00045,0.00257,0.00045,0.39681),(0.00047,0.00269,0.00047,0.38532),(0.00050,0.00284,0.00050,0.37169),(0.00055,0.00309,0.00055,0.34999)} {(0.04470,0.00176,0.00108,0.00046),(0.04658,0.00197,0.00128,0.00054),(0.04773,0.00211,0.00141,0.00060),(0.04867,0.00223,0.00154,0.00066),(0.04954,0.00235,0.00166,0.00071),(0.05046,0.00248,0.00180,0.00078),(0.05153,0.00264,0.00198,0.00085),(0.05323,0.00292,0.00230,0.00100)} {(0.00156,0.00435,0.00031,0.00467),(0.00175,0.00483,0.00037,0.00515),(0.00187,0.00513,0.00041,0.00545),(0.00197,0.00540,0.00045,0.00571),(0.00208,0.00565,0.00049,0.00597),(0.00219,0.00593,0.00053,0.00624),(0.00233,0.00627,0.00058,0.00658),(0.00257,0.00685,0.00068,0.00714)} {(0.00034,0.00200,0.00034,0.45712),(0.00038,0.00221,0.00038,0.43376),(0.00040,0.00235,0.00040,0.41955),(0.00043,0.00246,0.00043,0.40783),(0.00045,0.00257,0.00045,0.39681),(0.00047,0.00269,0.00047,0.38532),(0.00050,0.00284,0.00050,0.37169),(0.00055,0.00309,0.00055,0.34999)} ] +[8] CLV 7: [ {(0.00372,0.75598,0.00372,0.01935),(0.00421,0.74234,0.00421,0.02163),(0.00453,0.73383,0.00453,0.02313),(0.00482,0.72669,0.00482,0.02442),(0.00510,0.71986,0.00510,0.02569),(0.00541,0.71262,0.00541,0.02707),(0.00581,0.70386,0.00581,0.02879),(0.00649,0.68952,0.00649,0.03173)} {(0.00124,0.00023,0.64443,0.00023),(0.00139,0.00026,0.62531,0.00026),(0.00149,0.00028,0.61343,0.00028),(0.00157,0.00030,0.60349,0.00030),(0.00166,0.00032,0.59401,0.00032),(0.00175,0.00034,0.58399,0.00034),(0.00186,0.00036,0.57191,0.00036),(0.00206,0.00041,0.55223,0.00041)} {(0.02662,0.00318,0.00322,0.03658),(0.02807,0.00358,0.00363,0.03834),(0.02896,0.00384,0.00390,0.03942),(0.02972,0.00407,0.00413,0.04031),(0.03043,0.00429,0.00436,0.04116),(0.03119,0.00454,0.00461,0.04204),(0.03210,0.00485,0.00493,0.04310),(0.03359,0.00538,0.00548,0.04479)} {(0.00372,0.75598,0.00372,0.01935),(0.00421,0.74234,0.00421,0.02163),(0.00453,0.73383,0.00453,0.02313),(0.00482,0.72669,0.00482,0.02442),(0.00510,0.71986,0.00510,0.02569),(0.00541,0.71262,0.00541,0.02707),(0.00581,0.70386,0.00581,0.02879),(0.00649,0.68952,0.00649,0.03173)} {(0.00093,0.00484,0.00093,0.63986),(0.00105,0.00541,0.00105,0.62102),(0.00113,0.00578,0.00113,0.60934),(0.00120,0.00610,0.00120,0.59958),(0.00128,0.00642,0.00128,0.59030),(0.00135,0.00677,0.00135,0.58050),(0.00145,0.00720,0.00145,0.56870),(0.00162,0.00793,0.00162,0.54954)} {(0.00093,0.00484,0.00093,0.63986),(0.00105,0.00541,0.00105,0.62102),(0.00113,0.00578,0.00113,0.60934),(0.00120,0.00610,0.00120,0.59958),(0.00128,0.00642,0.00128,0.59030),(0.00135,0.00677,0.00135,0.58050),(0.00145,0.00720,0.00145,0.56870),(0.00162,0.00793,0.00162,0.54954)} {(0.00124,0.00023,0.64443,0.00023),(0.00139,0.00026,0.62531,0.00026),(0.00149,0.00028,0.61343,0.00028),(0.00157,0.00030,0.60349,0.00030),(0.00166,0.00032,0.59401,0.00032),(0.00175,0.00034,0.58399,0.00034),(0.00186,0.00036,0.57191,0.00036),(0.00206,0.00041,0.55223,0.00041)} {(0.00372,0.75598,0.00372,0.01935),(0.00421,0.74234,0.00421,0.02163),(0.00453,0.73383,0.00453,0.02313),(0.00482,0.72669,0.00482,0.02442),(0.00510,0.71986,0.00510,0.02569),(0.00541,0.71262,0.00541,0.02707),(0.00581,0.70386,0.00581,0.02879),(0.00649,0.68952,0.00649,0.03173)} {(0.05325,0.03976,0.00645,0.00636),(0.05613,0.04191,0.00726,0.00716),(0.05793,0.04326,0.00780,0.00768),(0.05943,0.04438,0.00826,0.00813),(0.06086,0.04545,0.00872,0.00859),(0.06238,0.04658,0.00923,0.00908),(0.06420,0.04795,0.00986,0.00970),(0.06718,0.05017,0.01096,0.01076)} {(0.76262,0.00209,0.01119,0.00209),(0.74890,0.00237,0.01253,0.00237),(0.74031,0.00255,0.01341,0.00255),(0.73308,0.00271,0.01417,0.00271),(0.72616,0.00287,0.01492,0.00287),(0.71881,0.00304,0.01574,0.00304),(0.70989,0.00327,0.01676,0.00327),(0.69523,0.00365,0.01851,0.00365)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.76262,0.00209,0.01119,0.00209),(0.74890,0.00237,0.01253,0.00237),(0.74031,0.00255,0.01341,0.00255),(0.73308,0.00271,0.01417,0.00271),(0.72616,0.00287,0.01492,0.00287),(0.71881,0.00304,0.01574,0.00304),(0.70989,0.00327,0.01676,0.00327),(0.69523,0.00365,0.01851,0.00365)} {(0.00093,0.00484,0.00093,0.63986),(0.00105,0.00541,0.00105,0.62102),(0.00113,0.00578,0.00113,0.60934),(0.00120,0.00610,0.00120,0.59958),(0.00128,0.00642,0.00128,0.59030),(0.00135,0.00677,0.00135,0.58050),(0.00145,0.00720,0.00145,0.56870),(0.00162,0.00793,0.00162,0.54954)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00186,0.06048,0.00186,0.11128),(0.00210,0.06336,0.00210,0.11591),(0.00227,0.06514,0.00227,0.11871),(0.00241,0.06660,0.00241,0.12100),(0.00255,0.06799,0.00255,0.12314),(0.00271,0.06944,0.00271,0.12535),(0.00290,0.07118,0.00290,0.12796),(0.00325,0.07396,0.00325,0.13205)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.76262,0.00209,0.01119,0.00209),(0.74890,0.00237,0.01253,0.00237),(0.74031,0.00255,0.01341,0.00255),(0.73308,0.00271,0.01417,0.00271),(0.72616,0.00287,0.01492,0.00287),(0.71881,0.00304,0.01574,0.00304),(0.70989,0.00327,0.01676,0.00327),(0.69523,0.00365,0.01851,0.00365)} {(0.76262,0.00209,0.01119,0.00209),(0.74890,0.00237,0.01253,0.00237),(0.74031,0.00255,0.01341,0.00255),(0.73308,0.00271,0.01417,0.00271),(0.72616,0.00287,0.01492,0.00287),(0.71881,0.00304,0.01574,0.00304),(0.70989,0.00327,0.01676,0.00327),(0.69523,0.00365,0.01851,0.00365)} {(0.00124,0.00023,0.64443,0.00023),(0.00139,0.00026,0.62531,0.00026),(0.00149,0.00028,0.61343,0.00028),(0.00157,0.00030,0.60349,0.00030),(0.00166,0.00032,0.59401,0.00032),(0.00175,0.00034,0.58399,0.00034),(0.00186,0.00036,0.57191,0.00036),(0.00206,0.00041,0.55223,0.00041)} ] + + + TEST alpha(ncats) = 100.00( 8), mode = MEDIAN 0.841795 0.910016 0.948465 0.981013 1.012547 1.046551 1.088788 1.170825 [8] P-matrix for branch length 0.100000 @@ -3129,154 +6405,490 @@ +0.0670 +0.0375 +0.8768 +0.0187 +0.0281 +0.0886 +0.0094 +0.8739 -+0.9190 +0.0386 +0.0230 +0.0193 -+0.0290 +0.9157 +0.0097 +0.0456 -+0.0691 +0.0386 +0.8730 +0.0193 -+0.0290 +0.0913 +0.0097 +0.8701 ++0.9190 +0.0386 +0.0230 +0.0193 ++0.0290 +0.9157 +0.0097 +0.0456 ++0.0691 +0.0386 +0.8730 +0.0193 ++0.0290 +0.0913 +0.0097 +0.8701 + ++0.9160 +0.0401 +0.0239 +0.0201 ++0.0301 +0.9126 +0.0100 +0.0473 ++0.0716 +0.0401 +0.8683 +0.0201 ++0.0301 +0.0946 +0.0100 +0.8653 + ++0.9101 +0.0430 +0.0255 +0.0215 ++0.0322 +0.9066 +0.0107 +0.0504 ++0.0764 +0.0430 +0.8592 +0.0215 ++0.0322 +0.1008 +0.0107 +0.8562 + + +[8] P-matrix for branch length 0.200000 ++0.8746 +0.0603 +0.0349 +0.0302 ++0.0452 +0.8708 +0.0151 +0.0689 ++0.1047 +0.0603 +0.8048 +0.0302 ++0.0452 +0.1378 +0.0151 +0.8019 + ++0.8655 +0.0648 +0.0373 +0.0324 ++0.0486 +0.8617 +0.0162 +0.0735 ++0.1118 +0.0648 +0.7910 +0.0324 ++0.0486 +0.1469 +0.0162 +0.7883 + ++0.8605 +0.0673 +0.0386 +0.0336 ++0.0505 +0.8567 +0.0168 +0.0760 ++0.1157 +0.0673 +0.7834 +0.0336 ++0.0505 +0.1520 +0.0168 +0.7807 + ++0.8563 +0.0694 +0.0397 +0.0347 ++0.0520 +0.8525 +0.0173 +0.0781 ++0.1190 +0.0694 +0.7769 +0.0347 ++0.0520 +0.1562 +0.0173 +0.7744 + ++0.8522 +0.0714 +0.0407 +0.0357 ++0.0535 +0.8485 +0.0178 +0.0801 ++0.1221 +0.0714 +0.7708 +0.0357 ++0.0535 +0.1602 +0.0178 +0.7684 + ++0.8479 +0.0736 +0.0418 +0.0368 ++0.0552 +0.8442 +0.0184 +0.0822 ++0.1254 +0.0736 +0.7642 +0.0368 ++0.0552 +0.1645 +0.0184 +0.7619 + ++0.8425 +0.0762 +0.0432 +0.0381 ++0.0572 +0.8389 +0.0191 +0.0849 ++0.1295 +0.0762 +0.7562 +0.0381 ++0.0572 +0.1697 +0.0191 +0.7541 + ++0.8323 +0.0813 +0.0457 +0.0407 ++0.0610 +0.8289 +0.0203 +0.0898 ++0.1372 +0.0813 +0.7408 +0.0407 ++0.0610 +0.1796 +0.0203 +0.7390 + + +[8] P-matrix for branch length 1.000000 ++0.5663 +0.2233 +0.0986 +0.1117 ++0.1675 +0.5883 +0.0558 +0.1883 ++0.2959 +0.2233 +0.3691 +0.1117 ++0.1675 +0.3767 +0.0558 +0.4000 + ++0.5468 +0.2347 +0.1012 +0.1173 ++0.1760 +0.5724 +0.0587 +0.1929 ++0.3036 +0.2347 +0.3444 +0.1173 ++0.1760 +0.3858 +0.0587 +0.3795 + ++0.5365 +0.2407 +0.1024 +0.1204 ++0.1805 +0.5641 +0.0602 +0.1951 ++0.3073 +0.2407 +0.3316 +0.1204 ++0.1805 +0.3903 +0.0602 +0.3690 + ++0.5281 +0.2457 +0.1034 +0.1228 ++0.1843 +0.5575 +0.0614 +0.1969 ++0.3102 +0.2457 +0.3213 +0.1228 ++0.1843 +0.3937 +0.0614 +0.3606 + ++0.5202 +0.2503 +0.1043 +0.1252 ++0.1878 +0.5513 +0.0626 +0.1984 ++0.3128 +0.2503 +0.3117 +0.1252 ++0.1878 +0.3968 +0.0626 +0.3529 + ++0.5121 +0.2552 +0.1051 +0.1276 ++0.1914 +0.5449 +0.0638 +0.1999 ++0.3153 +0.2552 +0.3019 +0.1276 ++0.1914 +0.3998 +0.0638 +0.3450 + ++0.5024 +0.2610 +0.1061 +0.1305 ++0.1958 +0.5374 +0.0653 +0.2016 ++0.3182 +0.2610 +0.2903 +0.1305 ++0.1958 +0.4032 +0.0653 +0.3358 + ++0.4849 +0.2717 +0.1076 +0.1358 ++0.2037 +0.5240 +0.0679 +0.2043 ++0.3227 +0.2717 +0.2698 +0.1358 ++0.2037 +0.4087 +0.0679 +0.3197 + + +[8] P-matrix for branch length 1.000000 ++0.5663 +0.2233 +0.0986 +0.1117 ++0.1675 +0.5883 +0.0558 +0.1883 ++0.2959 +0.2233 +0.3691 +0.1117 ++0.1675 +0.3767 +0.0558 +0.4000 + ++0.5468 +0.2347 +0.1012 +0.1173 ++0.1760 +0.5724 +0.0587 +0.1929 ++0.3036 +0.2347 +0.3444 +0.1173 ++0.1760 +0.3858 +0.0587 +0.3795 + ++0.5365 +0.2407 +0.1024 +0.1204 ++0.1805 +0.5641 +0.0602 +0.1951 ++0.3073 +0.2407 +0.3316 +0.1204 ++0.1805 +0.3903 +0.0602 +0.3690 + ++0.5281 +0.2457 +0.1034 +0.1228 ++0.1843 +0.5575 +0.0614 +0.1969 ++0.3102 +0.2457 +0.3213 +0.1228 ++0.1843 +0.3937 +0.0614 +0.3606 + ++0.5202 +0.2503 +0.1043 +0.1252 ++0.1878 +0.5513 +0.0626 +0.1984 ++0.3128 +0.2503 +0.3117 +0.1252 ++0.1878 +0.3968 +0.0626 +0.3529 + ++0.5121 +0.2552 +0.1051 +0.1276 ++0.1914 +0.5449 +0.0638 +0.1999 ++0.3153 +0.2552 +0.3019 +0.1276 ++0.1914 +0.3998 +0.0638 +0.3450 + ++0.5024 +0.2610 +0.1061 +0.1305 ++0.1958 +0.5374 +0.0653 +0.2016 ++0.3182 +0.2610 +0.2903 +0.1305 ++0.1958 +0.4032 +0.0653 +0.3358 + ++0.4849 +0.2717 +0.1076 +0.1358 ++0.2037 +0.5240 +0.0679 +0.2043 ++0.3227 +0.2717 +0.2698 +0.1358 ++0.2037 +0.4087 +0.0679 +0.3197 + + +[8] CLV 5: [ {(0.05457,0.09938,0.00814,0.11671),(0.05818,0.10518,0.00934,0.12296),(0.06016,0.10834,0.01005,0.12633),(0.06181,0.11094,0.01066,0.12909),(0.06339,0.11341,0.01127,0.13169),(0.06507,0.11601,0.01193,0.13441),(0.06712,0.11915,0.01278,0.13768),(0.07101,0.12500,0.01447,0.14370)} {(0.76494,0.00205,0.01097,0.00205),(0.74917,0.00236,0.01250,0.00236),(0.74047,0.00255,0.01339,0.00255),(0.73320,0.00271,0.01416,0.00271),(0.72625,0.00287,0.01491,0.00287),(0.71885,0.00304,0.01573,0.00304),(0.70980,0.00327,0.01677,0.00327),(0.69265,0.00372,0.01882,0.00372)} {(0.05275,0.03939,0.00632,0.00623),(0.05608,0.04187,0.00724,0.00714),(0.05790,0.04323,0.00779,0.00767),(0.05941,0.04436,0.00825,0.00813),(0.06084,0.04543,0.00872,0.00858),(0.06237,0.04657,0.00923,0.00908),(0.06422,0.04796,0.00987,0.00970),(0.06770,0.05057,0.01116,0.01096)} {(0.00364,0.75829,0.00364,0.01898),(0.00420,0.74261,0.00420,0.02159),(0.00453,0.73398,0.00453,0.02310),(0.00481,0.72680,0.00481,0.02440),(0.00510,0.71994,0.00510,0.02567),(0.00541,0.71266,0.00541,0.02706),(0.00581,0.70378,0.00581,0.02881),(0.00662,0.68700,0.00662,0.03226)} {(0.02638,0.00312,0.00316,0.03628),(0.02804,0.00357,0.00362,0.03830),(0.02895,0.00383,0.00389,0.03940),(0.02970,0.00406,0.00413,0.04030),(0.03042,0.00429,0.00436,0.04114),(0.03118,0.00454,0.00461,0.04204),(0.03211,0.00485,0.00494,0.04311),(0.03385,0.00548,0.00558,0.04509)} {(0.00182,0.05998,0.00182,0.11048),(0.00210,0.06331,0.00210,0.11582),(0.00226,0.06510,0.00226,0.11866),(0.00241,0.06658,0.00241,0.12096),(0.00255,0.06797,0.00255,0.12311),(0.00271,0.06943,0.00271,0.12534),(0.00291,0.07119,0.00291,0.12798),(0.00331,0.07444,0.00331,0.13274)} {(0.00122,0.00023,0.64768,0.00023),(0.00139,0.00026,0.62568,0.00026),(0.00149,0.00028,0.61364,0.00028),(0.00157,0.00030,0.60365,0.00030),(0.00166,0.00032,0.59413,0.00032),(0.00175,0.00034,0.58405,0.00034),(0.00186,0.00036,0.57179,0.00036),(0.00209,0.00041,0.54878,0.00041)} {(0.00364,0.75829,0.00364,0.01898),(0.00420,0.74261,0.00420,0.02159),(0.00453,0.73398,0.00453,0.02310),(0.00481,0.72680,0.00481,0.02440),(0.00510,0.71994,0.00510,0.02567),(0.00541,0.71266,0.00541,0.02706),(0.00581,0.70378,0.00581,0.02881),(0.00662,0.68700,0.00662,0.03226)} {(0.00091,0.00474,0.00091,0.64307),(0.00105,0.00540,0.00105,0.62138),(0.00113,0.00577,0.00113,0.60955),(0.00120,0.00610,0.00120,0.59974),(0.00127,0.00642,0.00127,0.59042),(0.00135,0.00676,0.00135,0.58056),(0.00145,0.00720,0.00145,0.56859),(0.00165,0.00807,0.00165,0.54619)} {(0.76494,0.00205,0.01097,0.00205),(0.74917,0.00236,0.01250,0.00236),(0.74047,0.00255,0.01339,0.00255),(0.73320,0.00271,0.01416,0.00271),(0.72625,0.00287,0.01491,0.00287),(0.71885,0.00304,0.01573,0.00304),(0.70980,0.00327,0.01677,0.00327),(0.69265,0.00372,0.01882,0.00372)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.76494,0.00205,0.01097,0.00205),(0.74917,0.00236,0.01250,0.00236),(0.74047,0.00255,0.01339,0.00255),(0.73320,0.00271,0.01416,0.00271),(0.72625,0.00287,0.01491,0.00287),(0.71885,0.00304,0.01573,0.00304),(0.70980,0.00327,0.01677,0.00327),(0.69265,0.00372,0.01882,0.00372)} {(0.00091,0.00474,0.00091,0.64307),(0.00105,0.00540,0.00105,0.62138),(0.00113,0.00577,0.00113,0.60955),(0.00120,0.00610,0.00120,0.59974),(0.00127,0.00642,0.00127,0.59042),(0.00135,0.00676,0.00135,0.58056),(0.00145,0.00720,0.00145,0.56859),(0.00165,0.00807,0.00165,0.54619)} {(0.00091,0.00474,0.00091,0.64307),(0.00105,0.00540,0.00105,0.62138),(0.00113,0.00577,0.00113,0.60955),(0.00120,0.00610,0.00120,0.59974),(0.00127,0.00642,0.00127,0.59042),(0.00135,0.00676,0.00135,0.58056),(0.00145,0.00720,0.00145,0.56859),(0.00165,0.00807,0.00165,0.54619)} {(0.00211,0.01313,0.04854,0.00208),(0.00241,0.01396,0.05125,0.00238),(0.00260,0.01441,0.05271,0.00256),(0.00275,0.01479,0.05390,0.00271),(0.00291,0.01514,0.05503,0.00286),(0.00308,0.01552,0.05622,0.00303),(0.00329,0.01599,0.05764,0.00323),(0.00372,0.01686,0.06026,0.00365)} {(0.00091,0.00474,0.00091,0.64307),(0.00105,0.00540,0.00105,0.62138),(0.00113,0.00577,0.00113,0.60955),(0.00120,0.00610,0.00120,0.59974),(0.00127,0.00642,0.00127,0.59042),(0.00135,0.00676,0.00135,0.58056),(0.00145,0.00720,0.00145,0.56859),(0.00165,0.00807,0.00165,0.54619)} {(0.05275,0.03939,0.00632,0.00623),(0.05608,0.04187,0.00724,0.00714),(0.05790,0.04323,0.00779,0.00767),(0.05941,0.04436,0.00825,0.00813),(0.06084,0.04543,0.00872,0.00858),(0.06237,0.04657,0.00923,0.00908),(0.06422,0.04796,0.00987,0.00970),(0.06770,0.05057,0.01116,0.01096)} {(0.02638,0.00312,0.00316,0.03628),(0.02804,0.00357,0.00362,0.03830),(0.02895,0.00383,0.00389,0.03940),(0.02970,0.00406,0.00413,0.04030),(0.03042,0.00429,0.00436,0.04114),(0.03118,0.00454,0.00461,0.04204),(0.03211,0.00485,0.00494,0.04311),(0.03385,0.00548,0.00558,0.04509)} {(0.00091,0.00474,0.00091,0.64307),(0.00105,0.00540,0.00105,0.62138),(0.00113,0.00577,0.00113,0.60955),(0.00120,0.00610,0.00120,0.59974),(0.00127,0.00642,0.00127,0.59042),(0.00135,0.00676,0.00135,0.58056),(0.00145,0.00720,0.00145,0.56859),(0.00165,0.00807,0.00165,0.54619)} ] +[8] CLV 6: [ {(0.04905,0.00444,0.00161,0.00512),(0.05182,0.00505,0.00195,0.00578),(0.05332,0.00540,0.00217,0.00616),(0.05455,0.00570,0.00235,0.00648),(0.05572,0.00599,0.00254,0.00680),(0.05694,0.00631,0.00276,0.00715),(0.05841,0.00671,0.00304,0.00758),(0.06113,0.00750,0.00361,0.00842)} {(0.02495,0.00030,0.04284,0.00030),(0.02595,0.00035,0.04492,0.00035),(0.02647,0.00037,0.04601,0.00037),(0.02688,0.00039,0.04690,0.00039),(0.02726,0.00042,0.04772,0.00042),(0.02764,0.00044,0.04857,0.00044),(0.02809,0.00047,0.04957,0.00047),(0.02886,0.00053,0.05134,0.00053)} {(0.05073,0.03821,0.00998,0.00981),(0.05378,0.04054,0.01138,0.01118),(0.05544,0.04182,0.01220,0.01197),(0.05682,0.04288,0.01290,0.01265),(0.05812,0.04389,0.01358,0.01331),(0.05950,0.04496,0.01434,0.01404),(0.06118,0.04626,0.01528,0.01496),(0.06430,0.04870,0.01717,0.01678)} {(0.00166,0.61556,0.00166,0.01018),(0.00191,0.59341,0.00191,0.01161),(0.00205,0.58139,0.00205,0.01244),(0.00218,0.57146,0.00218,0.01315),(0.00230,0.56205,0.00230,0.01385),(0.00244,0.55214,0.00244,0.01461),(0.00261,0.54014,0.00261,0.01556),(0.00296,0.51782,0.00296,0.01746)} {(0.02536,0.00491,0.00499,0.03330),(0.02689,0.00559,0.00569,0.03495),(0.02772,0.00598,0.00610,0.03584),(0.02841,0.00632,0.00645,0.03656),(0.02906,0.00666,0.00679,0.03723),(0.02975,0.00702,0.00717,0.03794),(0.03059,0.00748,0.00764,0.03878),(0.03215,0.00839,0.00858,0.04031)} {(0.00016,0.00414,0.00016,0.08282),(0.00020,0.00465,0.00020,0.08494),(0.00022,0.00495,0.00022,0.08595),(0.00024,0.00520,0.00024,0.08671),(0.00026,0.00544,0.00026,0.08737),(0.00028,0.00571,0.00028,0.08800),(0.00031,0.00604,0.00031,0.08867),(0.00037,0.00667,0.00037,0.08965)} {(0.00047,0.00008,0.46725,0.00008),(0.00052,0.00009,0.43978,0.00009),(0.00055,0.00010,0.42505,0.00010),(0.00058,0.00010,0.41298,0.00010),(0.00060,0.00011,0.40163,0.00011),(0.00063,0.00011,0.38976,0.00011),(0.00066,0.00012,0.37553,0.00012),(0.00073,0.00013,0.34941,0.00013)} {(0.00166,0.61556,0.00166,0.01018),(0.00191,0.59341,0.00191,0.01161),(0.00205,0.58139,0.00205,0.01244),(0.00218,0.57146,0.00218,0.01315),(0.00230,0.56205,0.00230,0.01385),(0.00244,0.55214,0.00244,0.01461),(0.00261,0.54014,0.00261,0.01556),(0.00296,0.51782,0.00296,0.01746)} {(0.00972,0.00129,0.00116,0.02602),(0.01012,0.00146,0.00131,0.02677),(0.01033,0.00156,0.00139,0.02713),(0.01049,0.00164,0.00146,0.02741),(0.01065,0.00172,0.00153,0.02766),(0.01081,0.00181,0.00160,0.02790),(0.01100,0.00192,0.00169,0.02817),(0.01135,0.00213,0.00187,0.02858)} {(0.02495,0.00030,0.04284,0.00030),(0.02595,0.00035,0.04492,0.00035),(0.02647,0.00037,0.04601,0.00037),(0.02688,0.00039,0.04690,0.00039),(0.02726,0.00042,0.04772,0.00042),(0.02764,0.00044,0.04857,0.00044),(0.02809,0.00047,0.04957,0.00047),(0.02886,0.00053,0.05134,0.00053)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.04312,0.01748,0.00321,0.00277),(0.04511,0.01843,0.00368,0.00314),(0.04617,0.01895,0.00395,0.00336),(0.04702,0.01937,0.00419,0.00355),(0.04782,0.01977,0.00442,0.00373),(0.04864,0.02019,0.00467,0.00393),(0.04960,0.02069,0.00500,0.00419),(0.05133,0.02163,0.00564,0.00469)} {(0.00034,0.00197,0.00034,0.46115),(0.00038,0.00221,0.00038,0.43421),(0.00040,0.00234,0.00040,0.41980),(0.00043,0.00246,0.00043,0.40802),(0.00045,0.00257,0.00045,0.39695),(0.00047,0.00269,0.00047,0.38539),(0.00050,0.00284,0.00050,0.37156),(0.00055,0.00314,0.00055,0.34626)} {(0.00034,0.00197,0.00034,0.46115),(0.00038,0.00221,0.00038,0.43421),(0.00040,0.00234,0.00040,0.41980),(0.00043,0.00246,0.00043,0.40802),(0.00045,0.00257,0.00045,0.39695),(0.00047,0.00269,0.00047,0.38539),(0.00050,0.00284,0.00050,0.37156),(0.00055,0.00314,0.00055,0.34626)} {(0.00020,0.01109,0.00266,0.00045),(0.00025,0.01165,0.00299,0.00055),(0.00027,0.01194,0.00318,0.00061),(0.00030,0.01219,0.00335,0.00066),(0.00032,0.01241,0.00350,0.00071),(0.00035,0.01265,0.00367,0.00077),(0.00039,0.01294,0.00389,0.00085),(0.00047,0.01345,0.00430,0.00100)} {(0.00034,0.00197,0.00034,0.46115),(0.00038,0.00221,0.00038,0.43421),(0.00040,0.00234,0.00040,0.41980),(0.00043,0.00246,0.00043,0.40802),(0.00045,0.00257,0.00045,0.39695),(0.00047,0.00269,0.00047,0.38539),(0.00050,0.00284,0.00050,0.37156),(0.00055,0.00314,0.00055,0.34626)} {(0.04437,0.00173,0.00105,0.00044),(0.04655,0.00197,0.00127,0.00054),(0.04771,0.00211,0.00141,0.00060),(0.04865,0.00223,0.00153,0.00066),(0.04953,0.00235,0.00166,0.00071),(0.05045,0.00248,0.00180,0.00077),(0.05154,0.00264,0.00198,0.00086),(0.05352,0.00297,0.00236,0.00102)} {(0.00153,0.00427,0.00030,0.00459),(0.00174,0.00482,0.00037,0.00514),(0.00187,0.00513,0.00041,0.00545),(0.00197,0.00539,0.00045,0.00571),(0.00207,0.00565,0.00048,0.00597),(0.00219,0.00593,0.00053,0.00624),(0.00233,0.00628,0.00058,0.00658),(0.00262,0.00696,0.00070,0.00724)} {(0.00034,0.00197,0.00034,0.46115),(0.00038,0.00221,0.00038,0.43421),(0.00040,0.00234,0.00040,0.41980),(0.00043,0.00246,0.00043,0.40802),(0.00045,0.00257,0.00045,0.39695),(0.00047,0.00269,0.00047,0.38539),(0.00050,0.00284,0.00050,0.37156),(0.00055,0.00314,0.00055,0.34626)} ] +[8] CLV 7: [ {(0.00364,0.75829,0.00364,0.01898),(0.00420,0.74261,0.00420,0.02159),(0.00453,0.73398,0.00453,0.02310),(0.00481,0.72680,0.00481,0.02440),(0.00510,0.71994,0.00510,0.02567),(0.00541,0.71266,0.00541,0.02706),(0.00581,0.70378,0.00581,0.02881),(0.00662,0.68700,0.00662,0.03226)} {(0.00122,0.00023,0.64768,0.00023),(0.00139,0.00026,0.62568,0.00026),(0.00149,0.00028,0.61364,0.00028),(0.00157,0.00030,0.60365,0.00030),(0.00166,0.00032,0.59413,0.00032),(0.00175,0.00034,0.58405,0.00034),(0.00186,0.00036,0.57179,0.00036),(0.00209,0.00041,0.54878,0.00041)} {(0.02638,0.00312,0.00316,0.03628),(0.02804,0.00357,0.00362,0.03830),(0.02895,0.00383,0.00389,0.03940),(0.02970,0.00406,0.00413,0.04030),(0.03042,0.00429,0.00436,0.04114),(0.03118,0.00454,0.00461,0.04204),(0.03211,0.00485,0.00494,0.04311),(0.03385,0.00548,0.00558,0.04509)} {(0.00364,0.75829,0.00364,0.01898),(0.00420,0.74261,0.00420,0.02159),(0.00453,0.73398,0.00453,0.02310),(0.00481,0.72680,0.00481,0.02440),(0.00510,0.71994,0.00510,0.02567),(0.00541,0.71266,0.00541,0.02706),(0.00581,0.70378,0.00581,0.02881),(0.00662,0.68700,0.00662,0.03226)} {(0.00091,0.00474,0.00091,0.64307),(0.00105,0.00540,0.00105,0.62138),(0.00113,0.00577,0.00113,0.60955),(0.00120,0.00610,0.00120,0.59974),(0.00127,0.00642,0.00127,0.59042),(0.00135,0.00676,0.00135,0.58056),(0.00145,0.00720,0.00145,0.56859),(0.00165,0.00807,0.00165,0.54619)} {(0.00091,0.00474,0.00091,0.64307),(0.00105,0.00540,0.00105,0.62138),(0.00113,0.00577,0.00113,0.60955),(0.00120,0.00610,0.00120,0.59974),(0.00127,0.00642,0.00127,0.59042),(0.00135,0.00676,0.00135,0.58056),(0.00145,0.00720,0.00145,0.56859),(0.00165,0.00807,0.00165,0.54619)} {(0.00122,0.00023,0.64768,0.00023),(0.00139,0.00026,0.62568,0.00026),(0.00149,0.00028,0.61364,0.00028),(0.00157,0.00030,0.60365,0.00030),(0.00166,0.00032,0.59413,0.00032),(0.00175,0.00034,0.58405,0.00034),(0.00186,0.00036,0.57179,0.00036),(0.00209,0.00041,0.54878,0.00041)} {(0.00364,0.75829,0.00364,0.01898),(0.00420,0.74261,0.00420,0.02159),(0.00453,0.73398,0.00453,0.02310),(0.00481,0.72680,0.00481,0.02440),(0.00510,0.71994,0.00510,0.02567),(0.00541,0.71266,0.00541,0.02706),(0.00581,0.70378,0.00581,0.02881),(0.00662,0.68700,0.00662,0.03226)} {(0.05275,0.03939,0.00632,0.00623),(0.05608,0.04187,0.00724,0.00714),(0.05790,0.04323,0.00779,0.00767),(0.05941,0.04436,0.00825,0.00813),(0.06084,0.04543,0.00872,0.00858),(0.06237,0.04657,0.00923,0.00908),(0.06422,0.04796,0.00987,0.00970),(0.06770,0.05057,0.01116,0.01096)} {(0.76494,0.00205,0.01097,0.00205),(0.74917,0.00236,0.01250,0.00236),(0.74047,0.00255,0.01339,0.00255),(0.73320,0.00271,0.01416,0.00271),(0.72625,0.00287,0.01491,0.00287),(0.71885,0.00304,0.01573,0.00304),(0.70980,0.00327,0.01677,0.00327),(0.69265,0.00372,0.01882,0.00372)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.76494,0.00205,0.01097,0.00205),(0.74917,0.00236,0.01250,0.00236),(0.74047,0.00255,0.01339,0.00255),(0.73320,0.00271,0.01416,0.00271),(0.72625,0.00287,0.01491,0.00287),(0.71885,0.00304,0.01573,0.00304),(0.70980,0.00327,0.01677,0.00327),(0.69265,0.00372,0.01882,0.00372)} {(0.00091,0.00474,0.00091,0.64307),(0.00105,0.00540,0.00105,0.62138),(0.00113,0.00577,0.00113,0.60955),(0.00120,0.00610,0.00120,0.59974),(0.00127,0.00642,0.00127,0.59042),(0.00135,0.00676,0.00135,0.58056),(0.00145,0.00720,0.00145,0.56859),(0.00165,0.00807,0.00165,0.54619)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00182,0.05998,0.00182,0.11048),(0.00210,0.06331,0.00210,0.11582),(0.00226,0.06510,0.00226,0.11866),(0.00241,0.06658,0.00241,0.12096),(0.00255,0.06797,0.00255,0.12311),(0.00271,0.06943,0.00271,0.12534),(0.00291,0.07119,0.00291,0.12798),(0.00331,0.07444,0.00331,0.13274)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.76494,0.00205,0.01097,0.00205),(0.74917,0.00236,0.01250,0.00236),(0.74047,0.00255,0.01339,0.00255),(0.73320,0.00271,0.01416,0.00271),(0.72625,0.00287,0.01491,0.00287),(0.71885,0.00304,0.01573,0.00304),(0.70980,0.00327,0.01677,0.00327),(0.69265,0.00372,0.01882,0.00372)} {(0.76494,0.00205,0.01097,0.00205),(0.74917,0.00236,0.01250,0.00236),(0.74047,0.00255,0.01339,0.00255),(0.73320,0.00271,0.01416,0.00271),(0.72625,0.00287,0.01491,0.00287),(0.71885,0.00304,0.01573,0.00304),(0.70980,0.00327,0.01677,0.00327),(0.69265,0.00372,0.01882,0.00372)} {(0.00122,0.00023,0.64768,0.00023),(0.00139,0.00026,0.62568,0.00026),(0.00149,0.00028,0.61364,0.00028),(0.00157,0.00030,0.60365,0.00030),(0.00166,0.00032,0.59413,0.00032),(0.00175,0.00034,0.58405,0.00034),(0.00186,0.00036,0.57179,0.00036),(0.00209,0.00041,0.54878,0.00041)} ] + + + TEST alpha(ncats) = 0.10(16), mode = MEAN + +0.000000 0.000000 0.000000 0.000002 0.000022 0.000166 0.000882 0.003692 0.012917 0.039363 0.107650 0.270699 0.640794 1.470721 3.453341 9.999749 +[0] P-matrix for branch length 0.100000 ++1.0000 +0.0000 +0.0000 -0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 +-0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++0.9999 +0.0000 +0.0000 +0.0000 ++0.0000 +0.9999 +0.0000 +0.0000 ++0.0001 +0.0000 +0.9999 +0.0000 ++0.0000 +0.0001 +0.0000 +0.9999 + ++0.9997 +0.0001 +0.0001 +0.0001 ++0.0001 +0.9997 +0.0000 +0.0002 ++0.0003 +0.0001 +0.9995 +0.0001 ++0.0001 +0.0004 +0.0000 +0.9995 + ++0.9989 +0.0005 +0.0003 +0.0003 ++0.0004 +0.9989 +0.0001 +0.0006 ++0.0009 +0.0005 +0.9983 +0.0003 ++0.0004 +0.0013 +0.0001 +0.9982 + ++0.9968 +0.0015 +0.0010 +0.0008 ++0.0011 +0.9966 +0.0004 +0.0019 ++0.0029 +0.0015 +0.9949 +0.0008 ++0.0011 +0.0038 +0.0004 +0.9947 + ++0.9912 +0.0042 +0.0026 +0.0021 ++0.0031 +0.9907 +0.0010 +0.0052 ++0.0078 +0.0042 +0.9860 +0.0021 ++0.0031 +0.0103 +0.0010 +0.9855 + ++0.9780 +0.0104 +0.0064 +0.0052 ++0.0078 +0.9768 +0.0026 +0.0128 ++0.0192 +0.0104 +0.9652 +0.0052 ++0.0078 +0.0256 +0.0026 +0.9641 + ++0.9492 +0.0241 +0.0146 +0.0121 ++0.0181 +0.9468 +0.0060 +0.0291 ++0.0439 +0.0241 +0.9199 +0.0121 ++0.0181 +0.0582 +0.0060 +0.9176 + ++0.8891 +0.0532 +0.0311 +0.0266 ++0.0399 +0.8853 +0.0133 +0.0615 ++0.0933 +0.0532 +0.8269 +0.0266 ++0.0399 +0.1229 +0.0133 +0.8239 + ++0.7680 +0.1139 +0.0611 +0.0570 ++0.0855 +0.7670 +0.0285 +0.1191 ++0.1832 +0.1139 +0.6459 +0.0570 ++0.0855 +0.2381 +0.0285 +0.6479 + ++0.5233 +0.2485 +0.1039 +0.1242 ++0.1864 +0.5537 +0.0621 +0.1978 ++0.3118 +0.2485 +0.3155 +0.1242 ++0.1864 +0.3956 +0.0621 +0.3559 + + +[0] P-matrix for branch length 0.200000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++0.9999 +0.0001 +0.0000 +0.0000 ++0.0001 +0.9998 +0.0000 +0.0001 ++0.0001 +0.0001 +0.9998 +0.0000 ++0.0001 +0.0002 +0.0000 +0.9998 + ++0.9994 +0.0003 +0.0002 +0.0001 ++0.0002 +0.9994 +0.0001 +0.0004 ++0.0005 +0.0003 +0.9990 +0.0001 ++0.0002 +0.0007 +0.0001 +0.9990 + ++0.9979 +0.0010 +0.0006 +0.0005 ++0.0008 +0.9977 +0.0003 +0.0013 ++0.0019 +0.0010 +0.9966 +0.0005 ++0.0008 +0.0025 +0.0003 +0.9965 + ++0.9935 +0.0030 +0.0019 +0.0015 ++0.0023 +0.9932 +0.0008 +0.0038 ++0.0057 +0.0030 +0.9897 +0.0015 ++0.0023 +0.0076 +0.0008 +0.9894 + ++0.9825 +0.0083 +0.0051 +0.0041 ++0.0062 +0.9815 +0.0021 +0.0102 ++0.0154 +0.0083 +0.9722 +0.0041 ++0.0062 +0.0204 +0.0021 +0.9713 + ++0.9568 +0.0205 +0.0125 +0.0102 ++0.0154 +0.9547 +0.0051 +0.0249 ++0.0375 +0.0205 +0.9318 +0.0102 ++0.0154 +0.0497 +0.0051 +0.9298 + ++0.9022 +0.0468 +0.0276 +0.0234 ++0.0351 +0.8986 +0.0117 +0.0546 ++0.0827 +0.0468 +0.8471 +0.0234 ++0.0351 +0.1092 +0.0117 +0.8440 + ++0.7965 +0.0994 +0.0544 +0.0497 ++0.0745 +0.7942 +0.0248 +0.1065 ++0.1633 +0.0994 +0.6877 +0.0497 ++0.0745 +0.2129 +0.0248 +0.6877 + ++0.6156 +0.1954 +0.0912 +0.0977 ++0.1466 +0.6296 +0.0489 +0.1750 ++0.2736 +0.1954 +0.4332 +0.0977 ++0.1466 +0.3499 +0.0489 +0.4547 + ++0.3757 +0.3426 +0.1103 +0.1713 ++0.2570 +0.4466 +0.0857 +0.2108 ++0.3310 +0.3426 +0.1551 +0.1713 ++0.2570 +0.4216 +0.0857 +0.2358 + + +[0] P-matrix for branch length 1.000000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 + ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 -+0.9160 +0.0401 +0.0239 +0.0201 -+0.0301 +0.9126 +0.0100 +0.0473 -+0.0716 +0.0401 +0.8683 +0.0201 -+0.0301 +0.0946 +0.0100 +0.8653 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 -+0.9101 +0.0430 +0.0255 +0.0215 -+0.0322 +0.9066 +0.0107 +0.0504 -+0.0764 +0.0430 +0.8592 +0.0215 -+0.0322 +0.1008 +0.0107 +0.8562 ++0.9999 +0.0001 +0.0000 +0.0000 ++0.0000 +0.9999 +0.0000 +0.0001 ++0.0001 +0.0001 +0.9998 +0.0000 ++0.0000 +0.0002 +0.0000 +0.9998 ++0.9993 +0.0003 +0.0002 +0.0002 ++0.0003 +0.9992 +0.0001 +0.0004 ++0.0006 +0.0003 +0.9988 +0.0002 ++0.0003 +0.0009 +0.0001 +0.9988 -[8] P-matrix for branch length 0.200000 -+0.8746 +0.0603 +0.0349 +0.0302 -+0.0452 +0.8708 +0.0151 +0.0689 -+0.1047 +0.0603 +0.8048 +0.0302 -+0.0452 +0.1378 +0.0151 +0.8019 ++0.9970 +0.0014 +0.0009 +0.0007 ++0.0011 +0.9968 +0.0004 +0.0018 ++0.0027 +0.0014 +0.9952 +0.0007 ++0.0011 +0.0036 +0.0004 +0.9950 -+0.8655 +0.0648 +0.0373 +0.0324 -+0.0486 +0.8617 +0.0162 +0.0735 -+0.1118 +0.0648 +0.7910 +0.0324 -+0.0486 +0.1469 +0.0162 +0.7883 ++0.9894 +0.0050 +0.0031 +0.0025 ++0.0037 +0.9888 +0.0012 +0.0062 ++0.0093 +0.0050 +0.9832 +0.0025 ++0.0037 +0.0124 +0.0012 +0.9826 -+0.8605 +0.0673 +0.0386 +0.0336 -+0.0505 +0.8567 +0.0168 +0.0760 -+0.1157 +0.0673 +0.7834 +0.0336 -+0.0505 +0.1520 +0.0168 +0.7807 ++0.9683 +0.0150 +0.0092 +0.0075 ++0.0112 +0.9667 +0.0037 +0.0183 ++0.0276 +0.0150 +0.9499 +0.0075 ++0.0112 +0.0367 +0.0037 +0.9483 -+0.8563 +0.0694 +0.0397 +0.0347 -+0.0520 +0.8525 +0.0173 +0.0781 -+0.1190 +0.0694 +0.7769 +0.0347 -+0.0520 +0.1562 +0.0173 +0.7744 ++0.9168 +0.0397 +0.0236 +0.0198 ++0.0298 +0.9135 +0.0099 +0.0468 ++0.0708 +0.0397 +0.8696 +0.0198 ++0.0298 +0.0936 +0.0099 +0.8667 -+0.8522 +0.0714 +0.0407 +0.0357 -+0.0535 +0.8485 +0.0178 +0.0801 -+0.1221 +0.0714 +0.7708 +0.0357 -+0.0535 +0.1602 +0.0178 +0.7684 ++0.8102 +0.0924 +0.0512 +0.0462 ++0.0693 +0.8073 +0.0231 +0.1002 ++0.1535 +0.0924 +0.7079 +0.0462 ++0.0693 +0.2004 +0.0231 +0.7071 -+0.8479 +0.0736 +0.0418 +0.0368 -+0.0552 +0.8442 +0.0184 +0.0822 -+0.1254 +0.0736 +0.7642 +0.0368 -+0.0552 +0.1645 +0.0184 +0.7619 ++0.6340 +0.1853 +0.0881 +0.0926 ++0.1390 +0.6454 +0.0463 +0.1694 ++0.2644 +0.1853 +0.4577 +0.0926 ++0.1390 +0.3387 +0.0463 +0.4760 -+0.8425 +0.0762 +0.0432 +0.0381 -+0.0572 +0.8389 +0.0191 +0.0849 -+0.1295 +0.0762 +0.7562 +0.0381 -+0.0572 +0.1697 +0.0191 +0.7541 ++0.4334 +0.3041 +0.1105 +0.1520 ++0.2281 +0.4861 +0.0760 +0.2099 ++0.3316 +0.3041 +0.2123 +0.1520 ++0.2281 +0.4197 +0.0760 +0.2762 -+0.8323 +0.0813 +0.0457 +0.0407 -+0.0610 +0.8289 +0.0203 +0.0898 -+0.1372 +0.0813 +0.7408 +0.0407 -+0.0610 +0.1796 +0.0203 +0.7390 ++0.3169 +0.3860 +0.1041 +0.1930 ++0.2895 +0.4099 +0.0965 +0.2041 ++0.3122 +0.3860 +0.1088 +0.1930 ++0.2895 +0.4082 +0.0965 +0.2058 ++0.3000 +0.4000 +0.1000 +0.2000 ++0.3000 +0.4000 +0.1000 +0.2000 ++0.3000 +0.4000 +0.1000 +0.2000 ++0.3000 +0.4000 +0.1000 +0.2000 -[8] P-matrix for branch length 1.000000 -+0.5663 +0.2233 +0.0986 +0.1117 -+0.1675 +0.5883 +0.0558 +0.1883 -+0.2959 +0.2233 +0.3691 +0.1117 -+0.1675 +0.3767 +0.0558 +0.4000 -+0.5468 +0.2347 +0.1012 +0.1173 -+0.1760 +0.5724 +0.0587 +0.1929 -+0.3036 +0.2347 +0.3444 +0.1173 -+0.1760 +0.3858 +0.0587 +0.3795 +[0] P-matrix for branch length 1.000000 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 -+0.5365 +0.2407 +0.1024 +0.1204 -+0.1805 +0.5641 +0.0602 +0.1951 -+0.3073 +0.2407 +0.3316 +0.1204 -+0.1805 +0.3903 +0.0602 +0.3690 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 -+0.5281 +0.2457 +0.1034 +0.1228 -+0.1843 +0.5575 +0.0614 +0.1969 -+0.3102 +0.2457 +0.3213 +0.1228 -+0.1843 +0.3937 +0.0614 +0.3606 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 -+0.5202 +0.2503 +0.1043 +0.1252 -+0.1878 +0.5513 +0.0626 +0.1984 -+0.3128 +0.2503 +0.3117 +0.1252 -+0.1878 +0.3968 +0.0626 +0.3529 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 -+0.5121 +0.2552 +0.1051 +0.1276 -+0.1914 +0.5449 +0.0638 +0.1999 -+0.3153 +0.2552 +0.3019 +0.1276 -+0.1914 +0.3998 +0.0638 +0.3450 ++1.0000 +0.0000 +0.0000 +0.0000 ++0.0000 +1.0000 +0.0000 +0.0000 ++0.0000 +0.0000 +1.0000 +0.0000 ++0.0000 +0.0000 +0.0000 +1.0000 -+0.5024 +0.2610 +0.1061 +0.1305 -+0.1958 +0.5374 +0.0653 +0.2016 -+0.3182 +0.2610 +0.2903 +0.1305 -+0.1958 +0.4032 +0.0653 +0.3358 ++0.9999 +0.0001 +0.0000 +0.0000 ++0.0000 +0.9999 +0.0000 +0.0001 ++0.0001 +0.0001 +0.9998 +0.0000 ++0.0000 +0.0002 +0.0000 +0.9998 -+0.4849 +0.2717 +0.1076 +0.1358 -+0.2037 +0.5240 +0.0679 +0.2043 -+0.3227 +0.2717 +0.2698 +0.1358 -+0.2037 +0.4087 +0.0679 +0.3197 ++0.9993 +0.0003 +0.0002 +0.0002 ++0.0003 +0.9992 +0.0001 +0.0004 ++0.0006 +0.0003 +0.9988 +0.0002 ++0.0003 +0.0009 +0.0001 +0.9988 ++0.9970 +0.0014 +0.0009 +0.0007 ++0.0011 +0.9968 +0.0004 +0.0018 ++0.0027 +0.0014 +0.9952 +0.0007 ++0.0011 +0.0036 +0.0004 +0.9950 -[8] P-matrix for branch length 1.000000 -+0.5663 +0.2233 +0.0986 +0.1117 -+0.1675 +0.5883 +0.0558 +0.1883 -+0.2959 +0.2233 +0.3691 +0.1117 -+0.1675 +0.3767 +0.0558 +0.4000 ++0.9894 +0.0050 +0.0031 +0.0025 ++0.0037 +0.9888 +0.0012 +0.0062 ++0.0093 +0.0050 +0.9832 +0.0025 ++0.0037 +0.0124 +0.0012 +0.9826 -+0.5468 +0.2347 +0.1012 +0.1173 -+0.1760 +0.5724 +0.0587 +0.1929 -+0.3036 +0.2347 +0.3444 +0.1173 -+0.1760 +0.3858 +0.0587 +0.3795 ++0.9683 +0.0150 +0.0092 +0.0075 ++0.0112 +0.9667 +0.0037 +0.0183 ++0.0276 +0.0150 +0.9499 +0.0075 ++0.0112 +0.0367 +0.0037 +0.9483 -+0.5365 +0.2407 +0.1024 +0.1204 -+0.1805 +0.5641 +0.0602 +0.1951 -+0.3073 +0.2407 +0.3316 +0.1204 -+0.1805 +0.3903 +0.0602 +0.3690 ++0.9168 +0.0397 +0.0236 +0.0198 ++0.0298 +0.9135 +0.0099 +0.0468 ++0.0708 +0.0397 +0.8696 +0.0198 ++0.0298 +0.0936 +0.0099 +0.8667 -+0.5281 +0.2457 +0.1034 +0.1228 -+0.1843 +0.5575 +0.0614 +0.1969 -+0.3102 +0.2457 +0.3213 +0.1228 -+0.1843 +0.3937 +0.0614 +0.3606 ++0.8102 +0.0924 +0.0512 +0.0462 ++0.0693 +0.8073 +0.0231 +0.1002 ++0.1535 +0.0924 +0.7079 +0.0462 ++0.0693 +0.2004 +0.0231 +0.7071 -+0.5202 +0.2503 +0.1043 +0.1252 -+0.1878 +0.5513 +0.0626 +0.1984 -+0.3128 +0.2503 +0.3117 +0.1252 -+0.1878 +0.3968 +0.0626 +0.3529 ++0.6340 +0.1853 +0.0881 +0.0926 ++0.1390 +0.6454 +0.0463 +0.1694 ++0.2644 +0.1853 +0.4577 +0.0926 ++0.1390 +0.3387 +0.0463 +0.4760 -+0.5121 +0.2552 +0.1051 +0.1276 -+0.1914 +0.5449 +0.0638 +0.1999 -+0.3153 +0.2552 +0.3019 +0.1276 -+0.1914 +0.3998 +0.0638 +0.3450 ++0.4334 +0.3041 +0.1105 +0.1520 ++0.2281 +0.4861 +0.0760 +0.2099 ++0.3316 +0.3041 +0.2123 +0.1520 ++0.2281 +0.4197 +0.0760 +0.2762 -+0.5024 +0.2610 +0.1061 +0.1305 -+0.1958 +0.5374 +0.0653 +0.2016 -+0.3182 +0.2610 +0.2903 +0.1305 -+0.1958 +0.4032 +0.0653 +0.3358 ++0.3169 +0.3860 +0.1041 +0.1930 ++0.2895 +0.4099 +0.0965 +0.2041 ++0.3122 +0.3860 +0.1088 +0.1930 ++0.2895 +0.4082 +0.0965 +0.2058 -+0.4849 +0.2717 +0.1076 +0.1358 -+0.2037 +0.5240 +0.0679 +0.2043 -+0.3227 +0.2717 +0.2698 +0.1358 -+0.2037 +0.4087 +0.0679 +0.3197 ++0.3000 +0.4000 +0.1000 +0.2000 ++0.3000 +0.4000 +0.1000 +0.2000 ++0.3000 +0.4000 +0.1000 +0.2000 ++0.3000 +0.4000 +0.1000 +0.2000 -[8] CLV 5: [ {(0.05457,0.09938,0.00814,0.11671),(0.05818,0.10518,0.00934,0.12296),(0.06016,0.10834,0.01005,0.12633),(0.06181,0.11094,0.01066,0.12909),(0.06339,0.11341,0.01127,0.13169),(0.06507,0.11601,0.01193,0.13441),(0.06712,0.11915,0.01278,0.13768),(0.07101,0.12500,0.01447,0.14370)} {(0.76494,0.00205,0.01097,0.00205),(0.74917,0.00236,0.01250,0.00236),(0.74047,0.00255,0.01339,0.00255),(0.73320,0.00271,0.01416,0.00271),(0.72625,0.00287,0.01491,0.00287),(0.71885,0.00304,0.01573,0.00304),(0.70980,0.00327,0.01677,0.00327),(0.69265,0.00372,0.01882,0.00372)} {(0.05275,0.03939,0.00632,0.00623),(0.05608,0.04187,0.00724,0.00714),(0.05790,0.04323,0.00779,0.00767),(0.05941,0.04436,0.00825,0.00813),(0.06084,0.04543,0.00872,0.00858),(0.06237,0.04657,0.00923,0.00908),(0.06422,0.04796,0.00987,0.00970),(0.06770,0.05057,0.01116,0.01096)} {(0.00364,0.75829,0.00364,0.01898),(0.00420,0.74261,0.00420,0.02159),(0.00453,0.73398,0.00453,0.02310),(0.00481,0.72680,0.00481,0.02440),(0.00510,0.71994,0.00510,0.02567),(0.00541,0.71266,0.00541,0.02706),(0.00581,0.70378,0.00581,0.02881),(0.00662,0.68700,0.00662,0.03226)} {(0.02638,0.00312,0.00316,0.03628),(0.02804,0.00357,0.00362,0.03830),(0.02895,0.00383,0.00389,0.03940),(0.02970,0.00406,0.00413,0.04030),(0.03042,0.00429,0.00436,0.04114),(0.03118,0.00454,0.00461,0.04204),(0.03211,0.00485,0.00494,0.04311),(0.03385,0.00548,0.00558,0.04509)} {(0.00182,0.05998,0.00182,0.11048),(0.00210,0.06331,0.00210,0.11582),(0.00226,0.06510,0.00226,0.11866),(0.00241,0.06658,0.00241,0.12096),(0.00255,0.06797,0.00255,0.12311),(0.00271,0.06943,0.00271,0.12534),(0.00291,0.07119,0.00291,0.12798),(0.00331,0.07444,0.00331,0.13274)} {(0.00122,0.00023,0.64768,0.00023),(0.00139,0.00026,0.62568,0.00026),(0.00149,0.00028,0.61364,0.00028),(0.00157,0.00030,0.60365,0.00030),(0.00166,0.00032,0.59413,0.00032),(0.00175,0.00034,0.58405,0.00034),(0.00186,0.00036,0.57179,0.00036),(0.00209,0.00041,0.54878,0.00041)} {(0.00364,0.75829,0.00364,0.01898),(0.00420,0.74261,0.00420,0.02159),(0.00453,0.73398,0.00453,0.02310),(0.00481,0.72680,0.00481,0.02440),(0.00510,0.71994,0.00510,0.02567),(0.00541,0.71266,0.00541,0.02706),(0.00581,0.70378,0.00581,0.02881),(0.00662,0.68700,0.00662,0.03226)} {(0.00091,0.00474,0.00091,0.64307),(0.00105,0.00540,0.00105,0.62138),(0.00113,0.00577,0.00113,0.60955),(0.00120,0.00610,0.00120,0.59974),(0.00127,0.00642,0.00127,0.59042),(0.00135,0.00676,0.00135,0.58056),(0.00145,0.00720,0.00145,0.56859),(0.00165,0.00807,0.00165,0.54619)} {(0.76494,0.00205,0.01097,0.00205),(0.74917,0.00236,0.01250,0.00236),(0.74047,0.00255,0.01339,0.00255),(0.73320,0.00271,0.01416,0.00271),(0.72625,0.00287,0.01491,0.00287),(0.71885,0.00304,0.01573,0.00304),(0.70980,0.00327,0.01677,0.00327),(0.69265,0.00372,0.01882,0.00372)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.76494,0.00205,0.01097,0.00205),(0.74917,0.00236,0.01250,0.00236),(0.74047,0.00255,0.01339,0.00255),(0.73320,0.00271,0.01416,0.00271),(0.72625,0.00287,0.01491,0.00287),(0.71885,0.00304,0.01573,0.00304),(0.70980,0.00327,0.01677,0.00327),(0.69265,0.00372,0.01882,0.00372)} {(0.00091,0.00474,0.00091,0.64307),(0.00105,0.00540,0.00105,0.62138),(0.00113,0.00577,0.00113,0.60955),(0.00120,0.00610,0.00120,0.59974),(0.00127,0.00642,0.00127,0.59042),(0.00135,0.00676,0.00135,0.58056),(0.00145,0.00720,0.00145,0.56859),(0.00165,0.00807,0.00165,0.54619)} {(0.00091,0.00474,0.00091,0.64307),(0.00105,0.00540,0.00105,0.62138),(0.00113,0.00577,0.00113,0.60955),(0.00120,0.00610,0.00120,0.59974),(0.00127,0.00642,0.00127,0.59042),(0.00135,0.00676,0.00135,0.58056),(0.00145,0.00720,0.00145,0.56859),(0.00165,0.00807,0.00165,0.54619)} {(0.00211,0.01313,0.04854,0.00208),(0.00241,0.01396,0.05125,0.00238),(0.00260,0.01441,0.05271,0.00256),(0.00275,0.01479,0.05390,0.00271),(0.00291,0.01514,0.05503,0.00286),(0.00308,0.01552,0.05622,0.00303),(0.00329,0.01599,0.05764,0.00323),(0.00372,0.01686,0.06026,0.00365)} {(0.00091,0.00474,0.00091,0.64307),(0.00105,0.00540,0.00105,0.62138),(0.00113,0.00577,0.00113,0.60955),(0.00120,0.00610,0.00120,0.59974),(0.00127,0.00642,0.00127,0.59042),(0.00135,0.00676,0.00135,0.58056),(0.00145,0.00720,0.00145,0.56859),(0.00165,0.00807,0.00165,0.54619)} {(0.05275,0.03939,0.00632,0.00623),(0.05608,0.04187,0.00724,0.00714),(0.05790,0.04323,0.00779,0.00767),(0.05941,0.04436,0.00825,0.00813),(0.06084,0.04543,0.00872,0.00858),(0.06237,0.04657,0.00923,0.00908),(0.06422,0.04796,0.00987,0.00970),(0.06770,0.05057,0.01116,0.01096)} {(0.02638,0.00312,0.00316,0.03628),(0.02804,0.00357,0.00362,0.03830),(0.02895,0.00383,0.00389,0.03940),(0.02970,0.00406,0.00413,0.04030),(0.03042,0.00429,0.00436,0.04114),(0.03118,0.00454,0.00461,0.04204),(0.03211,0.00485,0.00494,0.04311),(0.03385,0.00548,0.00558,0.04509)} {(0.00091,0.00474,0.00091,0.64307),(0.00105,0.00540,0.00105,0.62138),(0.00113,0.00577,0.00113,0.60955),(0.00120,0.00610,0.00120,0.59974),(0.00127,0.00642,0.00127,0.59042),(0.00135,0.00676,0.00135,0.58056),(0.00145,0.00720,0.00145,0.56859),(0.00165,0.00807,0.00165,0.54619)} ] -[8] CLV 6: [ {(0.04905,0.00444,0.00161,0.00512),(0.05182,0.00505,0.00195,0.00578),(0.05332,0.00540,0.00217,0.00616),(0.05455,0.00570,0.00235,0.00648),(0.05572,0.00599,0.00254,0.00680),(0.05694,0.00631,0.00276,0.00715),(0.05841,0.00671,0.00304,0.00758),(0.06113,0.00750,0.00361,0.00842)} {(0.02495,0.00030,0.04284,0.00030),(0.02595,0.00035,0.04492,0.00035),(0.02647,0.00037,0.04601,0.00037),(0.02688,0.00039,0.04690,0.00039),(0.02726,0.00042,0.04772,0.00042),(0.02764,0.00044,0.04857,0.00044),(0.02809,0.00047,0.04957,0.00047),(0.02886,0.00053,0.05134,0.00053)} {(0.05073,0.03821,0.00998,0.00981),(0.05378,0.04054,0.01138,0.01118),(0.05544,0.04182,0.01220,0.01197),(0.05682,0.04288,0.01290,0.01265),(0.05812,0.04389,0.01358,0.01331),(0.05950,0.04496,0.01434,0.01404),(0.06118,0.04626,0.01528,0.01496),(0.06430,0.04870,0.01717,0.01678)} 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{(0.00122,0.00023,0.64768,0.00023),(0.00139,0.00026,0.62568,0.00026),(0.00149,0.00028,0.61364,0.00028),(0.00157,0.00030,0.60365,0.00030),(0.00166,0.00032,0.59413,0.00032),(0.00175,0.00034,0.58405,0.00034),(0.00186,0.00036,0.57179,0.00036),(0.00209,0.00041,0.54878,0.00041)} ] +[0] CLV 5: [ {(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00000,0.00000,0.00000,0.00000),(0.00001,0.00003,0.00000,0.00003),(0.00007,0.00014,0.00000,0.00017),(0.00029,0.00057,0.00000,0.00072),(0.00100,0.00200,0.00000,0.00249),(0.00303,0.00603,0.00002,0.00752),(0.00816,0.01612,0.00016,0.01998),(0.01981,0.03839,0.00098,0.04698),(0.04332,0.08059,0.00497,0.09597),(0.08409,0.14374,0.02116,0.16230),(0.13941,0.20244,0.07257,0.21038),(0.18743,0.20890,0.17210,0.20774)} 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{(1.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000),(1.00000,0.00000,0.00000,0.00000),(0.99999,0.00000,0.00000,0.00000),(0.99995,0.00000,0.00000,0.00000),(0.99973,0.00000,0.00000,0.00000),(0.99890,0.00000,0.00000,0.00000),(0.99623,0.00000,0.00000,0.00000),(0.98867,0.00000,0.00003,0.00000),(0.96960,0.00003,0.00018,0.00003),(0.92605,0.00018,0.00107,0.00018),(0.83611,0.00094,0.00531,0.00094),(0.67140,0.00434,0.02153,0.00434),(0.41893,0.01782,0.06623,0.01782),(0.13291,0.06909,0.10837,0.06909)} {(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,1.00000,0.00000),(0.00000,0.00000,0.99999,0.00000),(0.00000,0.00000,0.99992,0.00000),(0.00000,0.00000,0.99958,0.00000),(0.00000,0.00000,0.99826,0.00000),(0.00000,0.00000,0.99401,0.00000),(0.00000,0.00000,0.98205,0.00000),(0.00002,0.00000,0.95204,0.00000),(0.00012,0.00002,0.88451,0.00002),(0.00059,0.00010,0.74966,0.00010),(0.00239,0.00048,0.52067,0.00048),(0.00736,0.00198,0.22627,0.00198),(0.01204,0.00768,0.02105,0.00768)} ] - TEST alpha(ncats) = 0.50(16) + TEST alpha(ncats) = 0.50(16), mode = MEAN + +0.001597 0.014430 0.040418 0.080229 0.134935 0.206118 0.296026 0.407843 0.546137 0.717626 0.932625 1.207965 1.573685 2.091393 2.922296 4.826677 +[1] P-matrix for branch length 0.100000 ++0.9999 +0.0001 +0.0000 +0.0000 ++0.0000 +0.9999 +0.0000 +0.0001 ++0.0001 +0.0001 +0.9998 +0.0000 ++0.0000 +0.0002 +0.0000 +0.9998 + ++0.9988 +0.0006 +0.0003 +0.0003 ++0.0004 +0.9987 +0.0001 +0.0007 ++0.0010 +0.0006 +0.9981 +0.0003 ++0.0004 +0.0014 +0.0001 +0.9980 + ++0.9967 +0.0016 +0.0010 +0.0008 ++0.0012 +0.9965 +0.0004 +0.0020 ++0.0029 +0.0016 +0.9947 +0.0008 ++0.0012 +0.0039 +0.0004 +0.9945 + ++0.9934 +0.0031 +0.0019 +0.0016 ++0.0023 +0.9930 +0.0008 +0.0039 ++0.0058 +0.0031 +0.9895 +0.0016 ++0.0023 +0.0077 +0.0008 +0.9892 + ++0.9890 +0.0052 +0.0032 +0.0026 ++0.0039 +0.9883 +0.0013 +0.0065 ++0.0097 +0.0052 +0.9825 +0.0026 ++0.0039 +0.0129 +0.0013 +0.9819 + ++0.9832 +0.0079 +0.0049 +0.0040 ++0.0059 +0.9823 +0.0020 +0.0098 ++0.0147 +0.0079 +0.9734 +0.0040 ++0.0059 +0.0196 +0.0020 +0.9725 + ++0.9760 +0.0113 +0.0070 +0.0057 ++0.0085 +0.9747 +0.0028 +0.0139 ++0.0210 +0.0113 +0.9620 +0.0057 ++0.0085 +0.0279 +0.0028 +0.9608 + ++0.9672 +0.0155 +0.0095 +0.0078 ++0.0116 +0.9655 +0.0039 +0.0190 ++0.0286 +0.0155 +0.9481 +0.0078 ++0.0116 +0.0380 +0.0039 +0.9465 + ++0.9564 +0.0207 +0.0126 +0.0103 ++0.0155 +0.9543 +0.0052 +0.0251 ++0.0378 +0.0207 +0.9313 +0.0103 ++0.0155 +0.0501 +0.0052 +0.9292 + ++0.9433 +0.0269 +0.0163 +0.0135 ++0.0202 +0.9407 +0.0067 +0.0324 ++0.0488 +0.0269 +0.9108 +0.0135 ++0.0202 +0.0647 +0.0067 +0.9084 + ++0.9273 +0.0346 +0.0207 +0.0173 ++0.0260 +0.9242 +0.0087 +0.0411 ++0.0622 +0.0346 +0.8859 +0.0173 ++0.0260 +0.0823 +0.0087 +0.8831 + ++0.9074 +0.0443 +0.0262 +0.0221 ++0.0332 +0.9039 +0.0111 +0.0518 ++0.0785 +0.0443 +0.8551 +0.0221 ++0.0332 +0.1037 +0.0111 +0.8521 + ++0.8820 +0.0567 +0.0330 +0.0283 ++0.0425 +0.8782 +0.0142 +0.0651 ++0.0989 +0.0567 +0.8161 +0.0283 ++0.0425 +0.1302 +0.0142 +0.8131 + ++0.8480 +0.0735 +0.0418 +0.0368 ++0.0551 +0.8443 +0.0184 +0.0822 ++0.1253 +0.0735 +0.7644 +0.0368 ++0.0551 +0.1644 +0.0184 +0.7621 + ++0.7976 +0.0988 +0.0542 +0.0494 ++0.0741 +0.7952 +0.0247 +0.1060 ++0.1625 +0.0988 +0.6893 +0.0494 ++0.0741 +0.2119 +0.0247 +0.6893 + ++0.6998 +0.1497 +0.0758 +0.0748 ++0.1122 +0.7037 +0.0374 +0.1466 ++0.2273 +0.1497 +0.5482 +0.0748 ++0.1122 +0.2932 +0.0374 +0.5571 + + +[1] P-matrix for branch length 0.200000 ++0.9997 +0.0001 +0.0001 +0.0001 ++0.0001 +0.9997 +0.0000 +0.0002 ++0.0002 +0.0001 +0.9996 +0.0001 ++0.0001 +0.0003 +0.0000 +0.9996 + ++0.9976 +0.0011 +0.0007 +0.0006 ++0.0008 +0.9975 +0.0003 +0.0014 ++0.0021 +0.0011 +0.9962 +0.0006 ++0.0008 +0.0028 +0.0003 +0.9961 + ++0.9934 +0.0031 +0.0019 +0.0016 ++0.0023 +0.9930 +0.0008 +0.0039 ++0.0058 +0.0031 +0.9895 +0.0016 ++0.0023 +0.0078 +0.0008 +0.9891 + ++0.9869 +0.0062 +0.0038 +0.0031 ++0.0046 +0.9862 +0.0015 +0.0077 ++0.0115 +0.0062 +0.9792 +0.0031 ++0.0046 +0.0153 +0.0015 +0.9785 + ++0.9781 +0.0103 +0.0064 +0.0052 ++0.0078 +0.9769 +0.0026 +0.0127 ++0.0192 +0.0103 +0.9653 +0.0052 ++0.0078 +0.0255 +0.0026 +0.9642 + ++0.9668 +0.0157 +0.0096 +0.0078 ++0.0118 +0.9651 +0.0039 +0.0192 ++0.0289 +0.0157 +0.9476 +0.0078 ++0.0118 +0.0384 +0.0039 +0.9460 + ++0.9529 +0.0223 +0.0136 +0.0112 ++0.0168 +0.9506 +0.0056 +0.0270 ++0.0408 +0.0223 +0.9257 +0.0112 ++0.0168 +0.0541 +0.0056 +0.9236 + ++0.9360 +0.0305 +0.0183 +0.0152 ++0.0228 +0.9331 +0.0076 +0.0364 ++0.0550 +0.0305 +0.8993 +0.0152 ++0.0228 +0.0728 +0.0076 +0.8967 + ++0.9157 +0.0402 +0.0239 +0.0201 ++0.0302 +0.9123 +0.0101 +0.0474 ++0.0718 +0.0402 +0.8679 +0.0201 ++0.0302 +0.0948 +0.0101 +0.8649 + ++0.8915 +0.0520 +0.0305 +0.0260 ++0.0390 +0.8878 +0.0130 +0.0602 ++0.0914 +0.0520 +0.8306 +0.0260 ++0.0390 +0.1204 +0.0130 +0.8276 + ++0.8626 +0.0663 +0.0380 +0.0331 ++0.0497 +0.8588 +0.0166 +0.0750 ++0.1141 +0.0663 +0.7865 +0.0331 ++0.0497 +0.1499 +0.0166 +0.7838 + ++0.8277 +0.0836 +0.0469 +0.0418 ++0.0627 +0.8244 +0.0209 +0.0920 ++0.1406 +0.0836 +0.7340 +0.0418 ++0.0627 +0.1840 +0.0209 +0.7324 + ++0.7848 +0.1053 +0.0572 +0.0527 ++0.0790 +0.7830 +0.0263 +0.1117 ++0.1715 +0.1053 +0.6705 +0.0527 ++0.0790 +0.2234 +0.0263 +0.6713 + ++0.7304 +0.1335 +0.0694 +0.0668 ++0.1001 +0.7318 +0.0334 +0.1347 ++0.2082 +0.1335 +0.5916 +0.0668 ++0.1001 +0.2695 +0.0334 +0.5970 + ++0.6560 +0.1732 +0.0842 +0.0866 ++0.1299 +0.6646 +0.0433 +0.1622 ++0.2526 +0.1732 +0.4876 +0.0866 ++0.1299 +0.3244 +0.0433 +0.5024 + ++0.5321 +0.2433 +0.1029 +0.1217 ++0.1825 +0.5606 +0.0608 +0.1961 ++0.3088 +0.2433 +0.3262 +0.1217 ++0.1825 +0.3921 +0.0608 +0.3646 + + +[1] P-matrix for branch length 1.000000 ++0.9987 +0.0006 +0.0004 +0.0003 ++0.0005 +0.9986 +0.0002 +0.0008 ++0.0012 +0.0006 +0.9979 +0.0003 ++0.0005 +0.0015 +0.0002 +0.9978 + ++0.9882 +0.0056 +0.0035 +0.0028 ++0.0042 +0.9875 +0.0014 +0.0069 ++0.0104 +0.0056 +0.9813 +0.0028 ++0.0042 +0.0138 +0.0014 +0.9806 + ++0.9675 +0.0154 +0.0094 +0.0077 ++0.0115 +0.9658 +0.0038 +0.0188 ++0.0283 +0.0154 +0.9486 +0.0077 ++0.0115 +0.0376 +0.0038 +0.9470 + ++0.9370 +0.0300 +0.0181 +0.0150 ++0.0225 +0.9342 +0.0075 +0.0359 ++0.0542 +0.0300 +0.9009 +0.0150 ++0.0225 +0.0717 +0.0075 +0.8983 + ++0.8975 +0.0491 +0.0289 +0.0246 ++0.0368 +0.8938 +0.0123 +0.0571 ++0.0866 +0.0491 +0.8398 +0.0246 ++0.0368 +0.1142 +0.0123 +0.8367 + ++0.8499 +0.0725 +0.0413 +0.0363 ++0.0544 +0.8462 +0.0181 +0.0812 ++0.1239 +0.0725 +0.7673 +0.0363 ++0.0544 +0.1625 +0.0181 +0.7650 + ++0.7954 +0.0999 +0.0547 +0.0500 ++0.0749 +0.7931 +0.0250 +0.1070 ++0.1641 +0.0999 +0.6861 +0.0500 ++0.0749 +0.2139 +0.0250 +0.6862 + ++0.7355 +0.1308 +0.0683 +0.0654 ++0.0981 +0.7366 +0.0327 +0.1326 ++0.2048 +0.1308 +0.5990 +0.0654 ++0.0981 +0.2653 +0.0327 +0.6039 + ++0.6718 +0.1646 +0.0812 +0.0823 ++0.1235 +0.6786 +0.0412 +0.1567 ++0.2437 +0.1646 +0.5094 +0.0823 ++0.1235 +0.3135 +0.0412 +0.5219 + ++0.6062 +0.2007 +0.0927 +0.1004 ++0.1505 +0.6216 +0.0502 +0.1777 ++0.2782 +0.2007 +0.4207 +0.1004 ++0.1505 +0.3554 +0.0502 +0.4438 + ++0.5407 +0.2383 +0.1019 +0.1191 ++0.1787 +0.5675 +0.0596 +0.1942 ++0.3058 +0.2383 +0.3368 +0.1191 ++0.1787 +0.3885 +0.0596 +0.3732 + ++0.4776 +0.2762 +0.1081 +0.1381 ++0.2071 +0.5184 +0.0690 +0.2054 ++0.3244 +0.2762 +0.2613 +0.1381 ++0.2071 +0.4107 +0.0690 +0.3131 + ++0.4193 +0.3132 +0.1109 +0.1566 ++0.2349 +0.4762 +0.0783 +0.2106 ++0.3326 +0.3132 +0.1976 +0.1566 ++0.2349 +0.4213 +0.0783 +0.2655 + ++0.3688 +0.3475 +0.1100 +0.1737 ++0.2606 +0.4420 +0.0869 +0.2105 ++0.3300 +0.3475 +0.1488 +0.1737 ++0.2606 +0.4209 +0.0869 +0.2316 + ++0.3290 +0.3766 +0.1061 +0.1883 ++0.2824 +0.4171 +0.0941 +0.2063 ++0.3184 +0.3766 +0.1168 +0.1883 ++0.2824 +0.4126 +0.0941 +0.2109 + ++0.3043 +0.3963 +0.1012 +0.1982 ++0.2972 +0.4025 +0.0991 +0.2012 ++0.3037 +0.3963 +0.1018 +0.1982 ++0.2972 +0.4024 +0.0991 +0.2013 + + +[1] P-matrix for branch length 1.000000 ++0.9987 +0.0006 +0.0004 +0.0003 ++0.0005 +0.9986 +0.0002 +0.0008 ++0.0012 +0.0006 +0.9979 +0.0003 ++0.0005 +0.0015 +0.0002 +0.9978 + ++0.9882 +0.0056 +0.0035 +0.0028 ++0.0042 +0.9875 +0.0014 +0.0069 ++0.0104 +0.0056 +0.9813 +0.0028 ++0.0042 +0.0138 +0.0014 +0.9806 + ++0.9675 +0.0154 +0.0094 +0.0077 ++0.0115 +0.9658 +0.0038 +0.0188 ++0.0283 +0.0154 +0.9486 +0.0077 ++0.0115 +0.0376 +0.0038 +0.9470 + ++0.9370 +0.0300 +0.0181 +0.0150 ++0.0225 +0.9342 +0.0075 +0.0359 ++0.0542 +0.0300 +0.9009 +0.0150 ++0.0225 +0.0717 +0.0075 +0.8983 + ++0.8975 +0.0491 +0.0289 +0.0246 ++0.0368 +0.8938 +0.0123 +0.0571 ++0.0866 +0.0491 +0.8398 +0.0246 ++0.0368 +0.1142 +0.0123 +0.8367 + ++0.8499 +0.0725 +0.0413 +0.0363 ++0.0544 +0.8462 +0.0181 +0.0812 ++0.1239 +0.0725 +0.7673 +0.0363 ++0.0544 +0.1625 +0.0181 +0.7650 + ++0.7954 +0.0999 +0.0547 +0.0500 ++0.0749 +0.7931 +0.0250 +0.1070 ++0.1641 +0.0999 +0.6861 +0.0500 ++0.0749 +0.2139 +0.0250 +0.6862 + ++0.7355 +0.1308 +0.0683 +0.0654 ++0.0981 +0.7366 +0.0327 +0.1326 ++0.2048 +0.1308 +0.5990 +0.0654 ++0.0981 +0.2653 +0.0327 +0.6039 + ++0.6718 +0.1646 +0.0812 +0.0823 ++0.1235 +0.6786 +0.0412 +0.1567 ++0.2437 +0.1646 +0.5094 +0.0823 ++0.1235 +0.3135 +0.0412 +0.5219 + ++0.6062 +0.2007 +0.0927 +0.1004 ++0.1505 +0.6216 +0.0502 +0.1777 ++0.2782 +0.2007 +0.4207 +0.1004 ++0.1505 +0.3554 +0.0502 +0.4438 + ++0.5407 +0.2383 +0.1019 +0.1191 ++0.1787 +0.5675 +0.0596 +0.1942 ++0.3058 +0.2383 +0.3368 +0.1191 ++0.1787 +0.3885 +0.0596 +0.3732 + ++0.4776 +0.2762 +0.1081 +0.1381 ++0.2071 +0.5184 +0.0690 +0.2054 ++0.3244 +0.2762 +0.2613 +0.1381 ++0.2071 +0.4107 +0.0690 +0.3131 + ++0.4193 +0.3132 +0.1109 +0.1566 ++0.2349 +0.4762 +0.0783 +0.2106 ++0.3326 +0.3132 +0.1976 +0.1566 ++0.2349 +0.4213 +0.0783 +0.2655 + ++0.3688 +0.3475 +0.1100 +0.1737 ++0.2606 +0.4420 +0.0869 +0.2105 ++0.3300 +0.3475 +0.1488 +0.1737 ++0.2606 +0.4209 +0.0869 +0.2316 + ++0.3290 +0.3766 +0.1061 +0.1883 ++0.2824 +0.4171 +0.0941 +0.2063 ++0.3184 +0.3766 +0.1168 +0.1883 ++0.2824 +0.4126 +0.0941 +0.2109 + ++0.3043 +0.3963 +0.1012 +0.1982 ++0.2972 +0.4025 +0.0991 +0.2012 ++0.3037 +0.3963 +0.1018 +0.1982 ++0.2972 +0.4024 +0.0991 +0.2013 + + +[1] CLV 5: [ {(0.00012,0.00025,0.00000,0.00031),(0.00112,0.00223,0.00000,0.00279),(0.00311,0.00619,0.00002,0.00772),(0.00612,0.01213,0.00009,0.01506),(0.01017,0.02002,0.00025,0.02476),(0.01530,0.02987,0.00058,0.03673),(0.02154,0.04163,0.00116,0.05085),(0.02897,0.05529,0.00214,0.06697),(0.03766,0.07080,0.00370,0.08488),(0.04774,0.08808,0.00611,0.10433),(0.05935,0.10705,0.00976,0.12496),(0.07272,0.12754,0.01526,0.14628),(0.08820,0.14931,0.02361,0.16761),(0.10641,0.17186,0.03670,0.18787),(0.12862,0.19413,0.05876,0.20511),(0.15906,0.21222,0.10475,0.21451)} {(0.99947,0.00000,0.00000,0.00000),(0.99525,0.00000,0.00000,0.00000),(0.98677,0.00001,0.00003,0.00001),(0.97395,0.00002,0.00013,0.00002),(0.95668,0.00006,0.00037,0.00006),(0.93478,0.00014,0.00083,0.00014),(0.90801,0.00028,0.00166,0.00028),(0.87607,0.00052,0.00302,0.00052),(0.83852,0.00091,0.00515,0.00091),(0.79478,0.00152,0.00835,0.00152),(0.74403,0.00247,0.01302,0.00247),(0.68507,0.00393,0.01977,0.00393),(0.61597,0.00624,0.02943,0.00624),(0.53342,0.01003,0.04334,0.01003),(0.43031,0.01688,0.06381,0.01688),(0.28311,0.03330,0.09539,0.03330)} {(0.00012,0.00009,0.00000,0.00000),(0.00112,0.00084,0.00000,0.00000),(0.00311,0.00233,0.00002,0.00002),(0.00610,0.00457,0.00007,0.00007),(0.01012,0.00758,0.00020,0.00020),(0.01517,0.01136,0.00045,0.00045),(0.02129,0.01593,0.00091,0.00091),(0.02851,0.02131,0.00167,0.00166),(0.03685,0.02754,0.00289,0.00286),(0.04638,0.03464,0.00475,0.00470),(0.05715,0.04268,0.00756,0.00745),(0.06922,0.05171,0.01176,0.01154),(0.08266,0.06185,0.01807,0.01765),(0.09750,0.07327,0.02779,0.02698),(0.11362,0.08634,0.04375,0.04214),(0.12946,0.10231,0.07515,0.07155)} {(0.00000,0.99944,0.00000,0.00000),(0.00000,0.99497,0.00000,0.00001),(0.00001,0.98601,0.00001,0.00006),(0.00004,0.97250,0.00004,0.00023),(0.00011,0.95437,0.00011,0.00065),(0.00025,0.93148,0.00025,0.00147),(0.00050,0.90367,0.00050,0.00292),(0.00093,0.87074,0.00093,0.00530),(0.00162,0.83236,0.00162,0.00899),(0.00271,0.78815,0.00271,0.01449),(0.00439,0.73752,0.00439,0.02247),(0.00699,0.67960,0.00699,0.03385),(0.01109,0.61305,0.01109,0.04991),(0.01782,0.53547,0.01782,0.07262),(0.03000,0.44170,0.03000,0.10522),(0.05920,0.31431,0.05920,0.15375)} {(0.00006,0.00000,0.00000,0.00009),(0.00056,0.00000,0.00000,0.00084),(0.00155,0.00001,0.00001,0.00232),(0.00305,0.00004,0.00004,0.00454),(0.00506,0.00010,0.00010,0.00748),(0.00759,0.00023,0.00023,0.01113),(0.01065,0.00045,0.00046,0.01548),(0.01425,0.00083,0.00084,0.02048),(0.01843,0.00143,0.00144,0.02611),(0.02319,0.00235,0.00238,0.03229),(0.02858,0.00372,0.00378,0.03895),(0.03461,0.00577,0.00588,0.04594),(0.04133,0.00882,0.00903,0.05302),(0.04875,0.01349,0.01390,0.05978),(0.05681,0.02107,0.02188,0.06527),(0.06473,0.03578,0.03757,0.06653)} {(0.00000,0.00015,0.00000,0.00031),(0.00000,0.00139,0.00000,0.00278),(0.00000,0.00386,0.00000,0.00770),(0.00002,0.00755,0.00002,0.01499),(0.00005,0.01245,0.00005,0.02457),(0.00012,0.01851,0.00012,0.03628),(0.00025,0.02570,0.00025,0.04995),(0.00046,0.03398,0.00046,0.06530),(0.00081,0.04326,0.00081,0.08202),(0.00135,0.05344,0.00135,0.09963),(0.00219,0.06437,0.00219,0.11751),(0.00350,0.07583,0.00350,0.13474),(0.00555,0.08746,0.00555,0.14997),(0.00891,0.09860,0.00891,0.16088),(0.01500,0.10779,0.01500,0.16297),(0.02960,0.10992,0.02960,0.14295)} {(0.00000,0.00000,0.99916,0.00000),(0.00000,0.00000,0.99247,0.00000),(0.00000,0.00000,0.97905,0.00000),(0.00001,0.00000,0.95887,0.00000),(0.00004,0.00001,0.93186,0.00001),(0.00009,0.00002,0.89793,0.00002),(0.00018,0.00003,0.85696,0.00003),(0.00034,0.00006,0.80878,0.00006),(0.00057,0.00010,0.75319,0.00010),(0.00093,0.00017,0.68990,0.00017),(0.00145,0.00027,0.61857,0.00027),(0.00220,0.00044,0.53869,0.00044),(0.00327,0.00069,0.44954,0.00069),(0.00482,0.00111,0.34995,0.00111),(0.00709,0.00188,0.23773,0.00188),(0.01060,0.00370,0.10639,0.00370)} 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{(0.00000,0.00000,0.99916,0.00000),(0.00000,0.00000,0.99247,0.00000),(0.00000,0.00000,0.97905,0.00000),(0.00001,0.00000,0.95887,0.00000),(0.00004,0.00001,0.93186,0.00001),(0.00009,0.00002,0.89793,0.00002),(0.00018,0.00003,0.85696,0.00003),(0.00034,0.00006,0.80878,0.00006),(0.00057,0.00010,0.75319,0.00010),(0.00093,0.00017,0.68990,0.00017),(0.00145,0.00027,0.61857,0.00027),(0.00220,0.00044,0.53869,0.00044),(0.00327,0.00069,0.44954,0.00069),(0.00482,0.00111,0.34995,0.00111),(0.00709,0.00188,0.23773,0.00188),(0.01060,0.00370,0.10639,0.00370)} ] + + + TEST alpha(ncats) = 0.50(16), mode = MEDIAN 0.002048 0.014396 0.039400 0.077707 0.130352 0.198858 0.285400 0.393054 0.526241 0.691473 0.898778 1.164582 1.518420 2.021781 2.842245 5.195265 [1] P-matrix for branch length 0.100000 @@ -3932,23 +7880,359 @@ +0.3308 +0.3438 +0.1535 +0.1719 +0.2579 +0.4215 +0.0860 +0.2347 -+0.3315 +0.3747 +0.1065 +0.1873 -+0.2810 +0.4186 +0.0937 +0.2067 -+0.3194 +0.3747 +0.1186 +0.1873 -+0.2810 +0.4134 +0.0937 +0.2120 ++0.3315 +0.3747 +0.1065 +0.1873 ++0.2810 +0.4186 +0.0937 +0.2067 ++0.3194 +0.3747 +0.1186 +0.1873 ++0.2810 +0.4134 +0.0937 +0.2120 + ++0.3030 +0.3974 +0.1009 +0.1987 ++0.2981 +0.4017 +0.0994 +0.2008 ++0.3027 +0.3974 +0.1012 +0.1987 ++0.2981 +0.4017 +0.0994 +0.2009 + + +[1] CLV 5: [ {(0.00016,0.00032,0.00000,0.00040),(0.00111,0.00223,0.00000,0.00278),(0.00303,0.00604,0.00002,0.00752),(0.00593,0.01176,0.00008,0.01460),(0.00984,0.01937,0.00024,0.02397),(0.01478,0.02889,0.00054,0.03554),(0.02082,0.04028,0.00108,0.04924),(0.02801,0.05355,0.00199,0.06492),(0.03645,0.06866,0.00345,0.08243),(0.04625,0.08557,0.00571,0.10154),(0.05759,0.10424,0.00914,0.12196),(0.07071,0.12457,0.01434,0.14326),(0.08602,0.14637,0.02229,0.16482),(0.10419,0.16930,0.03489,0.18568),(0.12679,0.19254,0.05663,0.20401),(0.16288,0.21315,0.11229,0.21447)} 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{(0.00008,0.00000,0.00000,0.00012),(0.00056,0.00000,0.00000,0.00083),(0.00151,0.00001,0.00001,0.00226),(0.00296,0.00003,0.00003,0.00440),(0.00489,0.00009,0.00009,0.00724),(0.00733,0.00021,0.00021,0.01077),(0.01029,0.00042,0.00042,0.01498),(0.01379,0.00078,0.00078,0.01984),(0.01785,0.00134,0.00135,0.02534),(0.02249,0.00220,0.00222,0.03140),(0.02777,0.00349,0.00354,0.03798),(0.03372,0.00543,0.00553,0.04494),(0.04040,0.00834,0.00854,0.05209),(0.04788,0.01285,0.01323,0.05905),(0.05620,0.02036,0.02112,0.06494),(0.06530,0.03804,0.04000,0.06608)} {(0.00000,0.99928,0.00000,0.00000),(0.00000,0.99499,0.00000,0.00001),(0.00001,0.98636,0.00001,0.00006),(0.00004,0.97335,0.00004,0.00022),(0.00010,0.95587,0.00010,0.00061),(0.00023,0.93377,0.00023,0.00137),(0.00047,0.90690,0.00047,0.00273),(0.00086,0.87499,0.00086,0.00496),(0.00151,0.83773,0.00151,0.00842),(0.00253,0.79466,0.00253,0.01360),(0.00410,0.74516,0.00410,0.02115),(0.00655,0.68825,0.00655,0.03200),(0.01043,0.62243,0.01043,0.04745),(0.01687,0.54492,0.01687,0.06963),(0.02878,0.44940,0.02878,0.10236),(0.06459,0.29841,0.06459,0.15935)} {(0.00000,0.00000,0.00000,0.99889),(0.00000,0.00000,0.00000,0.99221),(0.00000,0.00001,0.00000,0.97884),(0.00001,0.00006,0.00001,0.95876),(0.00002,0.00015,0.00002,0.93193),(0.00006,0.00034,0.00006,0.89831),(0.00012,0.00068,0.00012,0.85782),(0.00022,0.00124,0.00022,0.81038),(0.00038,0.00210,0.00038,0.75587),(0.00063,0.00340,0.00063,0.69412),(0.00103,0.00529,0.00103,0.62490),(0.00164,0.00800,0.00164,0.54785),(0.00261,0.01186,0.00261,0.46243),(0.00422,0.01741,0.00422,0.36753),(0.00720,0.02559,0.00720,0.26051),(0.01615,0.03984,0.01615,0.12019)} {(0.00000,0.00000,0.00000,0.99889),(0.00000,0.00000,0.00000,0.99221),(0.00000,0.00001,0.00000,0.97884),(0.00001,0.00006,0.00001,0.95876),(0.00002,0.00015,0.00002,0.93193),(0.00006,0.00034,0.00006,0.89831),(0.00012,0.00068,0.00012,0.85782),(0.00022,0.00124,0.00022,0.81038),(0.00038,0.00210,0.00038,0.75587),(0.00063,0.00340,0.00063,0.69412),(0.00103,0.00529,0.00103,0.62490),(0.00164,0.00800,0.00164,0.54785),(0.00261,0.01186,0.00261,0.46243),(0.00422,0.01741,0.00422,0.36753),(0.00720,0.02559,0.00720,0.26051),(0.01615,0.03984,0.01615,0.12019)} {(0.00000,0.00000,0.99893,0.00000),(0.00000,0.00000,0.99248,0.00000),(0.00000,0.00000,0.97957,0.00000),(0.00001,0.00000,0.96013,0.00000),(0.00004,0.00001,0.93409,0.00001),(0.00009,0.00001,0.90133,0.00001),(0.00017,0.00003,0.86170,0.00003),(0.00031,0.00005,0.81498,0.00005),(0.00054,0.00009,0.76092,0.00009),(0.00087,0.00016,0.69917,0.00016),(0.00136,0.00026,0.62925,0.00026),(0.00207,0.00041,0.55049,0.00041),(0.00310,0.00065,0.46190,0.00065),(0.00461,0.00105,0.36179,0.00105),(0.00689,0.00180,0.24654,0.00180),(0.01101,0.00404,0.09242,0.00404)} {(0.00000,0.99928,0.00000,0.00000),(0.00000,0.99499,0.00000,0.00001),(0.00001,0.98636,0.00001,0.00006),(0.00004,0.97335,0.00004,0.00022),(0.00010,0.95587,0.00010,0.00061),(0.00023,0.93377,0.00023,0.00137),(0.00047,0.90690,0.00047,0.00273),(0.00086,0.87499,0.00086,0.00496),(0.00151,0.83773,0.00151,0.00842),(0.00253,0.79466,0.00253,0.01360),(0.00410,0.74516,0.00410,0.02115),(0.00655,0.68825,0.00655,0.03200),(0.01043,0.62243,0.01043,0.04745),(0.01687,0.54492,0.01687,0.06963),(0.02878,0.44940,0.02878,0.10236),(0.06459,0.29841,0.06459,0.15935)} {(0.00016,0.00012,0.00000,0.00000),(0.00111,0.00084,0.00000,0.00000),(0.00303,0.00227,0.00002,0.00002),(0.00591,0.00443,0.00007,0.00007),(0.00979,0.00733,0.00019,0.00018),(0.01467,0.01098,0.00042,0.00042),(0.02058,0.01540,0.00085,0.00085),(0.02758,0.02062,0.00156,0.00155),(0.03569,0.02667,0.00270,0.00267),(0.04499,0.03360,0.00445,0.00440),(0.05554,0.04147,0.00709,0.00699),(0.06744,0.05037,0.01106,0.01086),(0.08080,0.06044,0.01707,0.01669),(0.09576,0.07190,0.02646,0.02570),(0.11240,0.08530,0.04224,0.04071),(0.13059,0.10412,0.08000,0.07608)} {(0.99932,0.00000,0.00000,0.00000),(0.99526,0.00000,0.00000,0.00000),(0.98710,0.00001,0.00003,0.00001),(0.97476,0.00002,0.00012,0.00002),(0.95811,0.00006,0.00034,0.00006),(0.93698,0.00013,0.00078,0.00013),(0.91112,0.00026,0.00155,0.00026),(0.88021,0.00049,0.00282,0.00049),(0.84379,0.00085,0.00482,0.00085),(0.80126,0.00142,0.00782,0.00142),(0.75174,0.00231,0.01225,0.00231),(0.69394,0.00369,0.01866,0.00369),(0.62579,0.00587,0.02794,0.00587),(0.54359,0.00949,0.04149,0.00949),(0.43893,0.01619,0.06200,0.01619),(0.26406,0.03633,0.09909,0.03633)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99932,0.00000,0.00000,0.00000),(0.99526,0.00000,0.00000,0.00000),(0.98710,0.00001,0.00003,0.00001),(0.97476,0.00002,0.00012,0.00002),(0.95811,0.00006,0.00034,0.00006),(0.93698,0.00013,0.00078,0.00013),(0.91112,0.00026,0.00155,0.00026),(0.88021,0.00049,0.00282,0.00049),(0.84379,0.00085,0.00482,0.00085),(0.80126,0.00142,0.00782,0.00142),(0.75174,0.00231,0.01225,0.00231),(0.69394,0.00369,0.01866,0.00369),(0.62579,0.00587,0.02794,0.00587),(0.54359,0.00949,0.04149,0.00949),(0.43893,0.01619,0.06200,0.01619),(0.26406,0.03633,0.09909,0.03633)} {(0.00000,0.00000,0.00000,0.99889),(0.00000,0.00000,0.00000,0.99221),(0.00000,0.00001,0.00000,0.97884),(0.00001,0.00006,0.00001,0.95876),(0.00002,0.00015,0.00002,0.93193),(0.00006,0.00034,0.00006,0.89831),(0.00012,0.00068,0.00012,0.85782),(0.00022,0.00124,0.00022,0.81038),(0.00038,0.00210,0.00038,0.75587),(0.00063,0.00340,0.00063,0.69412),(0.00103,0.00529,0.00103,0.62490),(0.00164,0.00800,0.00164,0.54785),(0.00261,0.01186,0.00261,0.46243),(0.00422,0.01741,0.00422,0.36753),(0.00720,0.02559,0.00720,0.26051),(0.01615,0.03984,0.01615,0.12019)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00020,0.00000,0.00040),(0.00000,0.00139,0.00000,0.00278),(0.00000,0.00377,0.00000,0.00751),(0.00002,0.00732,0.00002,0.01454),(0.00005,0.01204,0.00005,0.02378),(0.00011,0.01791,0.00011,0.03512),(0.00023,0.02488,0.00023,0.04839),(0.00043,0.03292,0.00043,0.06337),(0.00075,0.04198,0.00075,0.07976),(0.00126,0.05197,0.00126,0.09715),(0.00205,0.06277,0.00205,0.11497),(0.00328,0.07420,0.00328,0.13240),(0.00522,0.08593,0.00522,0.14814),(0.00843,0.09740,0.00843,0.15998),(0.01439,0.10724,0.01439,0.16330),(0.03229,0.10903,0.03229,0.13839)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99932,0.00000,0.00000,0.00000),(0.99526,0.00000,0.00000,0.00000),(0.98710,0.00001,0.00003,0.00001),(0.97476,0.00002,0.00012,0.00002),(0.95811,0.00006,0.00034,0.00006),(0.93698,0.00013,0.00078,0.00013),(0.91112,0.00026,0.00155,0.00026),(0.88021,0.00049,0.00282,0.00049),(0.84379,0.00085,0.00482,0.00085),(0.80126,0.00142,0.00782,0.00142),(0.75174,0.00231,0.01225,0.00231),(0.69394,0.00369,0.01866,0.00369),(0.62579,0.00587,0.02794,0.00587),(0.54359,0.00949,0.04149,0.00949),(0.43893,0.01619,0.06200,0.01619),(0.26406,0.03633,0.09909,0.03633)} {(0.99932,0.00000,0.00000,0.00000),(0.99526,0.00000,0.00000,0.00000),(0.98710,0.00001,0.00003,0.00001),(0.97476,0.00002,0.00012,0.00002),(0.95811,0.00006,0.00034,0.00006),(0.93698,0.00013,0.00078,0.00013),(0.91112,0.00026,0.00155,0.00026),(0.88021,0.00049,0.00282,0.00049),(0.84379,0.00085,0.00482,0.00085),(0.80126,0.00142,0.00782,0.00142),(0.75174,0.00231,0.01225,0.00231),(0.69394,0.00369,0.01866,0.00369),(0.62579,0.00587,0.02794,0.00587),(0.54359,0.00949,0.04149,0.00949),(0.43893,0.01619,0.06200,0.01619),(0.26406,0.03633,0.09909,0.03633)} {(0.00000,0.00000,0.99893,0.00000),(0.00000,0.00000,0.99248,0.00000),(0.00000,0.00000,0.97957,0.00000),(0.00001,0.00000,0.96013,0.00000),(0.00004,0.00001,0.93409,0.00001),(0.00009,0.00001,0.90133,0.00001),(0.00017,0.00003,0.86170,0.00003),(0.00031,0.00005,0.81498,0.00005),(0.00054,0.00009,0.76092,0.00009),(0.00087,0.00016,0.69917,0.00016),(0.00136,0.00026,0.62925,0.00026),(0.00207,0.00041,0.55049,0.00041),(0.00310,0.00065,0.46190,0.00065),(0.00461,0.00105,0.36179,0.00105),(0.00689,0.00180,0.24654,0.00180),(0.01101,0.00404,0.09242,0.00404)} ] + + + TEST alpha(ncats) = 0.75(16), mode = MEAN + +0.012120 0.053344 0.107800 0.173412 0.250055 0.338481 0.440148 0.557304 0.693259 0.852915 1.043796 1.278129 1.577630 1.986573 2.620010 4.015024 +[2] P-matrix for branch length 0.100000 ++0.9990 +0.0005 +0.0003 +0.0002 ++0.0004 +0.9989 +0.0001 +0.0006 ++0.0009 +0.0005 +0.9984 +0.0002 ++0.0004 +0.0012 +0.0001 +0.9984 + ++0.9956 +0.0021 +0.0013 +0.0010 ++0.0015 +0.9954 +0.0005 +0.0026 ++0.0039 +0.0021 +0.9930 +0.0010 ++0.0015 +0.0052 +0.0005 +0.9928 + ++0.9912 +0.0042 +0.0026 +0.0021 ++0.0031 +0.9907 +0.0010 +0.0052 ++0.0078 +0.0042 +0.9860 +0.0021 ++0.0031 +0.0103 +0.0010 +0.9855 + ++0.9858 +0.0067 +0.0041 +0.0033 ++0.0050 +0.9851 +0.0017 +0.0083 ++0.0124 +0.0067 +0.9776 +0.0033 ++0.0050 +0.0165 +0.0017 +0.9768 + ++0.9797 +0.0096 +0.0059 +0.0048 ++0.0072 +0.9786 +0.0024 +0.0118 ++0.0178 +0.0096 +0.9678 +0.0048 ++0.0072 +0.0237 +0.0024 +0.9667 + ++0.9726 +0.0129 +0.0080 +0.0065 ++0.0097 +0.9712 +0.0032 +0.0159 ++0.0239 +0.0129 +0.9567 +0.0065 ++0.0097 +0.0317 +0.0032 +0.9553 + ++0.9647 +0.0167 +0.0102 +0.0084 ++0.0125 +0.9629 +0.0042 +0.0204 ++0.0307 +0.0167 +0.9442 +0.0084 ++0.0125 +0.0408 +0.0042 +0.9424 + ++0.9556 +0.0211 +0.0128 +0.0105 ++0.0158 +0.9534 +0.0053 +0.0255 ++0.0385 +0.0211 +0.9299 +0.0105 ++0.0158 +0.0511 +0.0053 +0.9278 + ++0.9452 +0.0260 +0.0158 +0.0130 ++0.0195 +0.9426 +0.0065 +0.0313 ++0.0473 +0.0260 +0.9137 +0.0130 ++0.0195 +0.0627 +0.0065 +0.9113 + ++0.9332 +0.0318 +0.0191 +0.0159 ++0.0238 +0.9303 +0.0079 +0.0379 ++0.0573 +0.0318 +0.8950 +0.0159 ++0.0238 +0.0759 +0.0079 +0.8923 + ++0.9192 +0.0385 +0.0230 +0.0193 ++0.0289 +0.9159 +0.0096 +0.0455 ++0.0689 +0.0385 +0.8733 +0.0193 ++0.0289 +0.0911 +0.0096 +0.8704 + ++0.9025 +0.0467 +0.0275 +0.0233 ++0.0350 +0.8989 +0.0117 +0.0545 ++0.0825 +0.0467 +0.8474 +0.0233 ++0.0350 +0.1089 +0.0117 +0.8444 + ++0.8818 +0.0568 +0.0330 +0.0284 ++0.0426 +0.8780 +0.0142 +0.0652 ++0.0991 +0.0568 +0.8157 +0.0284 ++0.0426 +0.1305 +0.0142 +0.8127 + ++0.8547 +0.0702 +0.0401 +0.0351 ++0.0526 +0.8510 +0.0175 +0.0789 ++0.1202 +0.0702 +0.7745 +0.0351 ++0.0526 +0.1578 +0.0175 +0.7721 + ++0.8153 +0.0898 +0.0499 +0.0449 ++0.0674 +0.8124 +0.0225 +0.0978 ++0.1497 +0.0898 +0.7155 +0.0449 ++0.0674 +0.1956 +0.0225 +0.7145 + ++0.7387 +0.1291 +0.0676 +0.0646 ++0.0968 +0.7395 +0.0323 +0.1314 ++0.2028 +0.1291 +0.6035 +0.0646 ++0.0968 +0.2627 +0.0323 +0.6082 + + +[2] P-matrix for branch length 0.200000 ++0.9980 +0.0009 +0.0006 +0.0005 ++0.0007 +0.9979 +0.0002 +0.0012 ++0.0018 +0.0009 +0.9968 +0.0005 ++0.0007 +0.0023 +0.0002 +0.9967 + ++0.9913 +0.0041 +0.0026 +0.0021 ++0.0031 +0.9908 +0.0010 +0.0051 ++0.0077 +0.0041 +0.9861 +0.0021 ++0.0031 +0.0102 +0.0010 +0.9856 + ++0.9824 +0.0083 +0.0051 +0.0041 ++0.0062 +0.9815 +0.0021 +0.0102 ++0.0154 +0.0083 +0.9722 +0.0041 ++0.0062 +0.0205 +0.0021 +0.9712 + ++0.9720 +0.0132 +0.0081 +0.0066 ++0.0099 +0.9705 +0.0033 +0.0162 ++0.0244 +0.0132 +0.9557 +0.0066 ++0.0099 +0.0325 +0.0033 +0.9543 + ++0.9600 +0.0190 +0.0116 +0.0095 ++0.0142 +0.9580 +0.0047 +0.0231 ++0.0347 +0.0190 +0.9368 +0.0095 ++0.0142 +0.0461 +0.0047 +0.9349 + ++0.9464 +0.0254 +0.0154 +0.0127 ++0.0191 +0.9439 +0.0064 +0.0306 ++0.0462 +0.0254 +0.9156 +0.0127 ++0.0191 +0.0613 +0.0064 +0.9133 + ++0.9312 +0.0328 +0.0197 +0.0164 ++0.0246 +0.9282 +0.0082 +0.0390 ++0.0590 +0.0328 +0.8919 +0.0164 ++0.0246 +0.0781 +0.0082 +0.8892 + ++0.9141 +0.0410 +0.0244 +0.0205 ++0.0308 +0.9107 +0.0103 +0.0483 ++0.0731 +0.0410 +0.8654 +0.0205 ++0.0308 +0.0965 +0.0103 +0.8624 + ++0.8949 +0.0504 +0.0295 +0.0252 ++0.0378 +0.8912 +0.0126 +0.0584 ++0.0886 +0.0504 +0.8358 +0.0252 ++0.0378 +0.1169 +0.0126 +0.8328 + ++0.8731 +0.0611 +0.0353 +0.0305 ++0.0458 +0.8693 +0.0153 +0.0696 ++0.1059 +0.0611 +0.8025 +0.0305 ++0.0458 +0.1393 +0.0153 +0.7997 + ++0.8482 +0.0734 +0.0417 +0.0367 ++0.0550 +0.8445 +0.0183 +0.0821 ++0.1252 +0.0734 +0.7648 +0.0367 ++0.0550 +0.1642 +0.0183 +0.7625 + ++0.8192 +0.0879 +0.0490 +0.0440 ++0.0659 +0.8161 +0.0220 +0.0960 ++0.1469 +0.0879 +0.7212 +0.0440 ++0.0659 +0.1920 +0.0220 +0.7201 + ++0.7844 +0.1055 +0.0573 +0.0528 ++0.0792 +0.7826 +0.0264 +0.1119 ++0.1719 +0.1055 +0.6698 +0.0528 ++0.0792 +0.2238 +0.0264 +0.6707 + ++0.7408 +0.1280 +0.0671 +0.0640 ++0.0960 +0.7415 +0.0320 +0.1305 ++0.2014 +0.1280 +0.6066 +0.0640 ++0.0960 +0.2610 +0.0320 +0.6110 + ++0.6813 +0.1595 +0.0794 +0.0797 ++0.1196 +0.6871 +0.0399 +0.1534 ++0.2382 +0.1595 +0.5225 +0.0797 ++0.1196 +0.3068 +0.0399 +0.5337 + ++0.5782 +0.2166 +0.0970 +0.1083 ++0.1624 +0.5981 +0.0541 +0.1854 ++0.2909 +0.2166 +0.3842 +0.1083 ++0.1624 +0.3707 +0.0541 +0.4127 + -+0.3030 +0.3974 +0.1009 +0.1987 -+0.2981 +0.4017 +0.0994 +0.2008 -+0.3027 +0.3974 +0.1012 +0.1987 -+0.2981 +0.4017 +0.0994 +0.2009 +[2] P-matrix for branch length 1.000000 ++0.9901 +0.0047 +0.0029 +0.0023 ++0.0035 +0.9895 +0.0012 +0.0058 ++0.0087 +0.0047 +0.9843 +0.0023 ++0.0035 +0.0116 +0.0012 +0.9837 + ++0.9574 +0.0202 +0.0123 +0.0101 ++0.0151 +0.9553 +0.0050 +0.0245 ++0.0369 +0.0202 +0.9328 +0.0101 ++0.0151 +0.0490 +0.0050 +0.9308 + ++0.9167 +0.0397 +0.0236 +0.0199 ++0.0298 +0.9134 +0.0099 +0.0469 ++0.0709 +0.0397 +0.8695 +0.0199 ++0.0298 +0.0937 +0.0099 +0.8665 + ++0.8712 +0.0620 +0.0358 +0.0310 ++0.0465 +0.8674 +0.0155 +0.0706 ++0.1074 +0.0620 +0.7996 +0.0310 ++0.0465 +0.1412 +0.0155 +0.7968 + ++0.8225 +0.0862 +0.0481 +0.0431 ++0.0647 +0.8193 +0.0216 +0.0944 ++0.1444 +0.0862 +0.7263 +0.0431 ++0.0647 +0.1889 +0.0216 +0.7249 + ++0.7717 +0.1120 +0.0602 +0.0560 ++0.0840 +0.7705 +0.0280 +0.1175 ++0.1806 +0.1120 +0.6513 +0.0560 ++0.0840 +0.2349 +0.0280 +0.6530 + ++0.7197 +0.1391 +0.0717 +0.0696 ++0.1043 +0.7219 +0.0348 +0.1390 ++0.2150 +0.1391 +0.5764 +0.0696 ++0.1043 +0.2779 +0.0348 +0.5830 + ++0.6671 +0.1672 +0.0821 +0.0836 ++0.1254 +0.6745 +0.0418 +0.1584 ++0.2464 +0.1672 +0.5029 +0.0836 ++0.1254 +0.3168 +0.0418 +0.5161 + ++0.6147 +0.1959 +0.0914 +0.0980 ++0.1470 +0.6288 +0.0490 +0.1752 ++0.2741 +0.1959 +0.4320 +0.0980 ++0.1470 +0.3505 +0.0490 +0.4536 + ++0.5631 +0.2252 +0.0991 +0.1126 ++0.1689 +0.5856 +0.0563 +0.1891 ++0.2972 +0.2252 +0.3649 +0.1126 ++0.1689 +0.3783 +0.0563 +0.3965 + ++0.5127 +0.2548 +0.1050 +0.1274 ++0.1911 +0.5454 +0.0637 +0.1998 ++0.3151 +0.2548 +0.3027 +0.1274 ++0.1911 +0.3996 +0.0637 +0.3456 + ++0.4644 +0.2844 +0.1090 +0.1422 ++0.2133 +0.5086 +0.0711 +0.2070 ++0.3271 +0.2844 +0.2464 +0.1422 ++0.2133 +0.4140 +0.0711 +0.3016 + ++0.4188 +0.3135 +0.1109 +0.1568 ++0.2351 +0.4758 +0.0784 +0.2107 ++0.3326 +0.3135 +0.1971 +0.1568 ++0.2351 +0.4213 +0.0784 +0.2651 + ++0.3768 +0.3419 +0.1104 +0.1709 ++0.2564 +0.4473 +0.0855 +0.2108 ++0.3311 +0.3419 +0.1561 +0.1709 ++0.2564 +0.4217 +0.0855 +0.2365 + ++0.3396 +0.3686 +0.1075 +0.1843 ++0.2764 +0.4236 +0.0921 +0.2078 ++0.3225 +0.3686 +0.1246 +0.1843 ++0.2764 +0.4156 +0.0921 +0.2158 + ++0.3096 +0.3919 +0.1026 +0.1959 ++0.2939 +0.4056 +0.0980 +0.2025 ++0.3077 +0.3919 +0.1045 +0.1959 ++0.2939 +0.4050 +0.0980 +0.2031 -[1] CLV 5: [ {(0.00016,0.00032,0.00000,0.00040),(0.00111,0.00223,0.00000,0.00278),(0.00303,0.00604,0.00002,0.00752),(0.00593,0.01176,0.00008,0.01460),(0.00984,0.01937,0.00024,0.02397),(0.01478,0.02889,0.00054,0.03554),(0.02082,0.04028,0.00108,0.04924),(0.02801,0.05355,0.00199,0.06492),(0.03645,0.06866,0.00345,0.08243),(0.04625,0.08557,0.00571,0.10154),(0.05759,0.10424,0.00914,0.12196),(0.07071,0.12457,0.01434,0.14326),(0.08602,0.14637,0.02229,0.16482),(0.10419,0.16930,0.03489,0.18568),(0.12679,0.19254,0.05663,0.20401),(0.16288,0.21315,0.11229,0.21447)} {(0.99932,0.00000,0.00000,0.00000),(0.99526,0.00000,0.00000,0.00000),(0.98710,0.00001,0.00003,0.00001),(0.97476,0.00002,0.00012,0.00002),(0.95811,0.00006,0.00034,0.00006),(0.93698,0.00013,0.00078,0.00013),(0.91112,0.00026,0.00155,0.00026),(0.88021,0.00049,0.00282,0.00049),(0.84379,0.00085,0.00482,0.00085),(0.80126,0.00142,0.00782,0.00142),(0.75174,0.00231,0.01225,0.00231),(0.69394,0.00369,0.01866,0.00369),(0.62579,0.00587,0.02794,0.00587),(0.54359,0.00949,0.04149,0.00949),(0.43893,0.01619,0.06200,0.01619),(0.26406,0.03633,0.09909,0.03633)} {(0.00016,0.00012,0.00000,0.00000),(0.00111,0.00084,0.00000,0.00000),(0.00303,0.00227,0.00002,0.00002),(0.00591,0.00443,0.00007,0.00007),(0.00979,0.00733,0.00019,0.00018),(0.01467,0.01098,0.00042,0.00042),(0.02058,0.01540,0.00085,0.00085),(0.02758,0.02062,0.00156,0.00155),(0.03569,0.02667,0.00270,0.00267),(0.04499,0.03360,0.00445,0.00440),(0.05554,0.04147,0.00709,0.00699),(0.06744,0.05037,0.01106,0.01086),(0.08080,0.06044,0.01707,0.01669),(0.09576,0.07190,0.02646,0.02570),(0.11240,0.08530,0.04224,0.04071),(0.13059,0.10412,0.08000,0.07608)} {(0.00000,0.99928,0.00000,0.00000),(0.00000,0.99499,0.00000,0.00001),(0.00001,0.98636,0.00001,0.00006),(0.00004,0.97335,0.00004,0.00022),(0.00010,0.95587,0.00010,0.00061),(0.00023,0.93377,0.00023,0.00137),(0.00047,0.90690,0.00047,0.00273),(0.00086,0.87499,0.00086,0.00496),(0.00151,0.83773,0.00151,0.00842),(0.00253,0.79466,0.00253,0.01360),(0.00410,0.74516,0.00410,0.02115),(0.00655,0.68825,0.00655,0.03200),(0.01043,0.62243,0.01043,0.04745),(0.01687,0.54492,0.01687,0.06963),(0.02878,0.44940,0.02878,0.10236),(0.06459,0.29841,0.06459,0.15935)} {(0.00008,0.00000,0.00000,0.00012),(0.00056,0.00000,0.00000,0.00083),(0.00151,0.00001,0.00001,0.00226),(0.00296,0.00003,0.00003,0.00440),(0.00489,0.00009,0.00009,0.00724),(0.00733,0.00021,0.00021,0.01077),(0.01029,0.00042,0.00042,0.01498),(0.01379,0.00078,0.00078,0.01984),(0.01785,0.00134,0.00135,0.02534),(0.02249,0.00220,0.00222,0.03140),(0.02777,0.00349,0.00354,0.03798),(0.03372,0.00543,0.00553,0.04494),(0.04040,0.00834,0.00854,0.05209),(0.04788,0.01285,0.01323,0.05905),(0.05620,0.02036,0.02112,0.06494),(0.06530,0.03804,0.04000,0.06608)} {(0.00000,0.00020,0.00000,0.00040),(0.00000,0.00139,0.00000,0.00278),(0.00000,0.00377,0.00000,0.00751),(0.00002,0.00732,0.00002,0.01454),(0.00005,0.01204,0.00005,0.02378),(0.00011,0.01791,0.00011,0.03512),(0.00023,0.02488,0.00023,0.04839),(0.00043,0.03292,0.00043,0.06337),(0.00075,0.04198,0.00075,0.07976),(0.00126,0.05197,0.00126,0.09715),(0.00205,0.06277,0.00205,0.11497),(0.00328,0.07420,0.00328,0.13240),(0.00522,0.08593,0.00522,0.14814),(0.00843,0.09740,0.00843,0.15998),(0.01439,0.10724,0.01439,0.16330),(0.03229,0.10903,0.03229,0.13839)} {(0.00000,0.00000,0.99893,0.00000),(0.00000,0.00000,0.99248,0.00000),(0.00000,0.00000,0.97957,0.00000),(0.00001,0.00000,0.96013,0.00000),(0.00004,0.00001,0.93409,0.00001),(0.00009,0.00001,0.90133,0.00001),(0.00017,0.00003,0.86170,0.00003),(0.00031,0.00005,0.81498,0.00005),(0.00054,0.00009,0.76092,0.00009),(0.00087,0.00016,0.69917,0.00016),(0.00136,0.00026,0.62925,0.00026),(0.00207,0.00041,0.55049,0.00041),(0.00310,0.00065,0.46190,0.00065),(0.00461,0.00105,0.36179,0.00105),(0.00689,0.00180,0.24654,0.00180),(0.01101,0.00404,0.09242,0.00404)} {(0.00000,0.99928,0.00000,0.00000),(0.00000,0.99499,0.00000,0.00001),(0.00001,0.98636,0.00001,0.00006),(0.00004,0.97335,0.00004,0.00022),(0.00010,0.95587,0.00010,0.00061),(0.00023,0.93377,0.00023,0.00137),(0.00047,0.90690,0.00047,0.00273),(0.00086,0.87499,0.00086,0.00496),(0.00151,0.83773,0.00151,0.00842),(0.00253,0.79466,0.00253,0.01360),(0.00410,0.74516,0.00410,0.02115),(0.00655,0.68825,0.00655,0.03200),(0.01043,0.62243,0.01043,0.04745),(0.01687,0.54492,0.01687,0.06963),(0.02878,0.44940,0.02878,0.10236),(0.06459,0.29841,0.06459,0.15935)} {(0.00000,0.00000,0.00000,0.99889),(0.00000,0.00000,0.00000,0.99221),(0.00000,0.00001,0.00000,0.97884),(0.00001,0.00006,0.00001,0.95876),(0.00002,0.00015,0.00002,0.93193),(0.00006,0.00034,0.00006,0.89831),(0.00012,0.00068,0.00012,0.85782),(0.00022,0.00124,0.00022,0.81038),(0.00038,0.00210,0.00038,0.75587),(0.00063,0.00340,0.00063,0.69412),(0.00103,0.00529,0.00103,0.62490),(0.00164,0.00800,0.00164,0.54785),(0.00261,0.01186,0.00261,0.46243),(0.00422,0.01741,0.00422,0.36753),(0.00720,0.02559,0.00720,0.26051),(0.01615,0.03984,0.01615,0.12019)} {(0.99932,0.00000,0.00000,0.00000),(0.99526,0.00000,0.00000,0.00000),(0.98710,0.00001,0.00003,0.00001),(0.97476,0.00002,0.00012,0.00002),(0.95811,0.00006,0.00034,0.00006),(0.93698,0.00013,0.00078,0.00013),(0.91112,0.00026,0.00155,0.00026),(0.88021,0.00049,0.00282,0.00049),(0.84379,0.00085,0.00482,0.00085),(0.80126,0.00142,0.00782,0.00142),(0.75174,0.00231,0.01225,0.00231),(0.69394,0.00369,0.01866,0.00369),(0.62579,0.00587,0.02794,0.00587),(0.54359,0.00949,0.04149,0.00949),(0.43893,0.01619,0.06200,0.01619),(0.26406,0.03633,0.09909,0.03633)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99932,0.00000,0.00000,0.00000),(0.99526,0.00000,0.00000,0.00000),(0.98710,0.00001,0.00003,0.00001),(0.97476,0.00002,0.00012,0.00002),(0.95811,0.00006,0.00034,0.00006),(0.93698,0.00013,0.00078,0.00013),(0.91112,0.00026,0.00155,0.00026),(0.88021,0.00049,0.00282,0.00049),(0.84379,0.00085,0.00482,0.00085),(0.80126,0.00142,0.00782,0.00142),(0.75174,0.00231,0.01225,0.00231),(0.69394,0.00369,0.01866,0.00369),(0.62579,0.00587,0.02794,0.00587),(0.54359,0.00949,0.04149,0.00949),(0.43893,0.01619,0.06200,0.01619),(0.26406,0.03633,0.09909,0.03633)} {(0.00000,0.00000,0.00000,0.99889),(0.00000,0.00000,0.00000,0.99221),(0.00000,0.00001,0.00000,0.97884),(0.00001,0.00006,0.00001,0.95876),(0.00002,0.00015,0.00002,0.93193),(0.00006,0.00034,0.00006,0.89831),(0.00012,0.00068,0.00012,0.85782),(0.00022,0.00124,0.00022,0.81038),(0.00038,0.00210,0.00038,0.75587),(0.00063,0.00340,0.00063,0.69412),(0.00103,0.00529,0.00103,0.62490),(0.00164,0.00800,0.00164,0.54785),(0.00261,0.01186,0.00261,0.46243),(0.00422,0.01741,0.00422,0.36753),(0.00720,0.02559,0.00720,0.26051),(0.01615,0.03984,0.01615,0.12019)} 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{(0.00000,0.99928,0.00000,0.00000),(0.00000,0.99499,0.00000,0.00001),(0.00001,0.98636,0.00001,0.00006),(0.00004,0.97335,0.00004,0.00022),(0.00010,0.95587,0.00010,0.00061),(0.00023,0.93377,0.00023,0.00137),(0.00047,0.90690,0.00047,0.00273),(0.00086,0.87499,0.00086,0.00496),(0.00151,0.83773,0.00151,0.00842),(0.00253,0.79466,0.00253,0.01360),(0.00410,0.74516,0.00410,0.02115),(0.00655,0.68825,0.00655,0.03200),(0.01043,0.62243,0.01043,0.04745),(0.01687,0.54492,0.01687,0.06963),(0.02878,0.44940,0.02878,0.10236),(0.06459,0.29841,0.06459,0.15935)} 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{(0.00008,0.00000,0.00000,0.00012),(0.00056,0.00000,0.00000,0.00083),(0.00151,0.00001,0.00001,0.00226),(0.00296,0.00003,0.00003,0.00440),(0.00489,0.00009,0.00009,0.00724),(0.00733,0.00021,0.00021,0.01077),(0.01029,0.00042,0.00042,0.01498),(0.01379,0.00078,0.00078,0.01984),(0.01785,0.00134,0.00135,0.02534),(0.02249,0.00220,0.00222,0.03140),(0.02777,0.00349,0.00354,0.03798),(0.03372,0.00543,0.00553,0.04494),(0.04040,0.00834,0.00854,0.05209),(0.04788,0.01285,0.01323,0.05905),(0.05620,0.02036,0.02112,0.06494),(0.06530,0.03804,0.04000,0.06608)} {(0.00000,0.99928,0.00000,0.00000),(0.00000,0.99499,0.00000,0.00001),(0.00001,0.98636,0.00001,0.00006),(0.00004,0.97335,0.00004,0.00022),(0.00010,0.95587,0.00010,0.00061),(0.00023,0.93377,0.00023,0.00137),(0.00047,0.90690,0.00047,0.00273),(0.00086,0.87499,0.00086,0.00496),(0.00151,0.83773,0.00151,0.00842),(0.00253,0.79466,0.00253,0.01360),(0.00410,0.74516,0.00410,0.02115),(0.00655,0.68825,0.00655,0.03200),(0.01043,0.62243,0.01043,0.04745),(0.01687,0.54492,0.01687,0.06963),(0.02878,0.44940,0.02878,0.10236),(0.06459,0.29841,0.06459,0.15935)} {(0.00000,0.00000,0.00000,0.99889),(0.00000,0.00000,0.00000,0.99221),(0.00000,0.00001,0.00000,0.97884),(0.00001,0.00006,0.00001,0.95876),(0.00002,0.00015,0.00002,0.93193),(0.00006,0.00034,0.00006,0.89831),(0.00012,0.00068,0.00012,0.85782),(0.00022,0.00124,0.00022,0.81038),(0.00038,0.00210,0.00038,0.75587),(0.00063,0.00340,0.00063,0.69412),(0.00103,0.00529,0.00103,0.62490),(0.00164,0.00800,0.00164,0.54785),(0.00261,0.01186,0.00261,0.46243),(0.00422,0.01741,0.00422,0.36753),(0.00720,0.02559,0.00720,0.26051),(0.01615,0.03984,0.01615,0.12019)} {(0.00000,0.00000,0.00000,0.99889),(0.00000,0.00000,0.00000,0.99221),(0.00000,0.00001,0.00000,0.97884),(0.00001,0.00006,0.00001,0.95876),(0.00002,0.00015,0.00002,0.93193),(0.00006,0.00034,0.00006,0.89831),(0.00012,0.00068,0.00012,0.85782),(0.00022,0.00124,0.00022,0.81038),(0.00038,0.00210,0.00038,0.75587),(0.00063,0.00340,0.00063,0.69412),(0.00103,0.00529,0.00103,0.62490),(0.00164,0.00800,0.00164,0.54785),(0.00261,0.01186,0.00261,0.46243),(0.00422,0.01741,0.00422,0.36753),(0.00720,0.02559,0.00720,0.26051),(0.01615,0.03984,0.01615,0.12019)} {(0.00000,0.00000,0.99893,0.00000),(0.00000,0.00000,0.99248,0.00000),(0.00000,0.00000,0.97957,0.00000),(0.00001,0.00000,0.96013,0.00000),(0.00004,0.00001,0.93409,0.00001),(0.00009,0.00001,0.90133,0.00001),(0.00017,0.00003,0.86170,0.00003),(0.00031,0.00005,0.81498,0.00005),(0.00054,0.00009,0.76092,0.00009),(0.00087,0.00016,0.69917,0.00016),(0.00136,0.00026,0.62925,0.00026),(0.00207,0.00041,0.55049,0.00041),(0.00310,0.00065,0.46190,0.00065),(0.00461,0.00105,0.36179,0.00105),(0.00689,0.00180,0.24654,0.00180),(0.01101,0.00404,0.09242,0.00404)} {(0.00000,0.99928,0.00000,0.00000),(0.00000,0.99499,0.00000,0.00001),(0.00001,0.98636,0.00001,0.00006),(0.00004,0.97335,0.00004,0.00022),(0.00010,0.95587,0.00010,0.00061),(0.00023,0.93377,0.00023,0.00137),(0.00047,0.90690,0.00047,0.00273),(0.00086,0.87499,0.00086,0.00496),(0.00151,0.83773,0.00151,0.00842),(0.00253,0.79466,0.00253,0.01360),(0.00410,0.74516,0.00410,0.02115),(0.00655,0.68825,0.00655,0.03200),(0.01043,0.62243,0.01043,0.04745),(0.01687,0.54492,0.01687,0.06963),(0.02878,0.44940,0.02878,0.10236),(0.06459,0.29841,0.06459,0.15935)} {(0.00016,0.00012,0.00000,0.00000),(0.00111,0.00084,0.00000,0.00000),(0.00303,0.00227,0.00002,0.00002),(0.00591,0.00443,0.00007,0.00007),(0.00979,0.00733,0.00019,0.00018),(0.01467,0.01098,0.00042,0.00042),(0.02058,0.01540,0.00085,0.00085),(0.02758,0.02062,0.00156,0.00155),(0.03569,0.02667,0.00270,0.00267),(0.04499,0.03360,0.00445,0.00440),(0.05554,0.04147,0.00709,0.00699),(0.06744,0.05037,0.01106,0.01086),(0.08080,0.06044,0.01707,0.01669),(0.09576,0.07190,0.02646,0.02570),(0.11240,0.08530,0.04224,0.04071),(0.13059,0.10412,0.08000,0.07608)} {(0.99932,0.00000,0.00000,0.00000),(0.99526,0.00000,0.00000,0.00000),(0.98710,0.00001,0.00003,0.00001),(0.97476,0.00002,0.00012,0.00002),(0.95811,0.00006,0.00034,0.00006),(0.93698,0.00013,0.00078,0.00013),(0.91112,0.00026,0.00155,0.00026),(0.88021,0.00049,0.00282,0.00049),(0.84379,0.00085,0.00482,0.00085),(0.80126,0.00142,0.00782,0.00142),(0.75174,0.00231,0.01225,0.00231),(0.69394,0.00369,0.01866,0.00369),(0.62579,0.00587,0.02794,0.00587),(0.54359,0.00949,0.04149,0.00949),(0.43893,0.01619,0.06200,0.01619),(0.26406,0.03633,0.09909,0.03633)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99932,0.00000,0.00000,0.00000),(0.99526,0.00000,0.00000,0.00000),(0.98710,0.00001,0.00003,0.00001),(0.97476,0.00002,0.00012,0.00002),(0.95811,0.00006,0.00034,0.00006),(0.93698,0.00013,0.00078,0.00013),(0.91112,0.00026,0.00155,0.00026),(0.88021,0.00049,0.00282,0.00049),(0.84379,0.00085,0.00482,0.00085),(0.80126,0.00142,0.00782,0.00142),(0.75174,0.00231,0.01225,0.00231),(0.69394,0.00369,0.01866,0.00369),(0.62579,0.00587,0.02794,0.00587),(0.54359,0.00949,0.04149,0.00949),(0.43893,0.01619,0.06200,0.01619),(0.26406,0.03633,0.09909,0.03633)} {(0.00000,0.00000,0.00000,0.99889),(0.00000,0.00000,0.00000,0.99221),(0.00000,0.00001,0.00000,0.97884),(0.00001,0.00006,0.00001,0.95876),(0.00002,0.00015,0.00002,0.93193),(0.00006,0.00034,0.00006,0.89831),(0.00012,0.00068,0.00012,0.85782),(0.00022,0.00124,0.00022,0.81038),(0.00038,0.00210,0.00038,0.75587),(0.00063,0.00340,0.00063,0.69412),(0.00103,0.00529,0.00103,0.62490),(0.00164,0.00800,0.00164,0.54785),(0.00261,0.01186,0.00261,0.46243),(0.00422,0.01741,0.00422,0.36753),(0.00720,0.02559,0.00720,0.26051),(0.01615,0.03984,0.01615,0.12019)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00020,0.00000,0.00040),(0.00000,0.00139,0.00000,0.00278),(0.00000,0.00377,0.00000,0.00751),(0.00002,0.00732,0.00002,0.01454),(0.00005,0.01204,0.00005,0.02378),(0.00011,0.01791,0.00011,0.03512),(0.00023,0.02488,0.00023,0.04839),(0.00043,0.03292,0.00043,0.06337),(0.00075,0.04198,0.00075,0.07976),(0.00126,0.05197,0.00126,0.09715),(0.00205,0.06277,0.00205,0.11497),(0.00328,0.07420,0.00328,0.13240),(0.00522,0.08593,0.00522,0.14814),(0.00843,0.09740,0.00843,0.15998),(0.01439,0.10724,0.01439,0.16330),(0.03229,0.10903,0.03229,0.13839)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99932,0.00000,0.00000,0.00000),(0.99526,0.00000,0.00000,0.00000),(0.98710,0.00001,0.00003,0.00001),(0.97476,0.00002,0.00012,0.00002),(0.95811,0.00006,0.00034,0.00006),(0.93698,0.00013,0.00078,0.00013),(0.91112,0.00026,0.00155,0.00026),(0.88021,0.00049,0.00282,0.00049),(0.84379,0.00085,0.00482,0.00085),(0.80126,0.00142,0.00782,0.00142),(0.75174,0.00231,0.01225,0.00231),(0.69394,0.00369,0.01866,0.00369),(0.62579,0.00587,0.02794,0.00587),(0.54359,0.00949,0.04149,0.00949),(0.43893,0.01619,0.06200,0.01619),(0.26406,0.03633,0.09909,0.03633)} {(0.99932,0.00000,0.00000,0.00000),(0.99526,0.00000,0.00000,0.00000),(0.98710,0.00001,0.00003,0.00001),(0.97476,0.00002,0.00012,0.00002),(0.95811,0.00006,0.00034,0.00006),(0.93698,0.00013,0.00078,0.00013),(0.91112,0.00026,0.00155,0.00026),(0.88021,0.00049,0.00282,0.00049),(0.84379,0.00085,0.00482,0.00085),(0.80126,0.00142,0.00782,0.00142),(0.75174,0.00231,0.01225,0.00231),(0.69394,0.00369,0.01866,0.00369),(0.62579,0.00587,0.02794,0.00587),(0.54359,0.00949,0.04149,0.00949),(0.43893,0.01619,0.06200,0.01619),(0.26406,0.03633,0.09909,0.03633)} {(0.00000,0.00000,0.99893,0.00000),(0.00000,0.00000,0.99248,0.00000),(0.00000,0.00000,0.97957,0.00000),(0.00001,0.00000,0.96013,0.00000),(0.00004,0.00001,0.93409,0.00001),(0.00009,0.00001,0.90133,0.00001),(0.00017,0.00003,0.86170,0.00003),(0.00031,0.00005,0.81498,0.00005),(0.00054,0.00009,0.76092,0.00009),(0.00087,0.00016,0.69917,0.00016),(0.00136,0.00026,0.62925,0.00026),(0.00207,0.00041,0.55049,0.00041),(0.00310,0.00065,0.46190,0.00065),(0.00461,0.00105,0.36179,0.00105),(0.00689,0.00180,0.24654,0.00180),(0.01101,0.00404,0.09242,0.00404)} ] +[2] P-matrix for branch length 1.000000 ++0.9901 +0.0047 +0.0029 +0.0023 ++0.0035 +0.9895 +0.0012 +0.0058 ++0.0087 +0.0047 +0.9843 +0.0023 ++0.0035 +0.0116 +0.0012 +0.9837 + ++0.9574 +0.0202 +0.0123 +0.0101 ++0.0151 +0.9553 +0.0050 +0.0245 ++0.0369 +0.0202 +0.9328 +0.0101 ++0.0151 +0.0490 +0.0050 +0.9308 + ++0.9167 +0.0397 +0.0236 +0.0199 ++0.0298 +0.9134 +0.0099 +0.0469 ++0.0709 +0.0397 +0.8695 +0.0199 ++0.0298 +0.0937 +0.0099 +0.8665 + ++0.8712 +0.0620 +0.0358 +0.0310 ++0.0465 +0.8674 +0.0155 +0.0706 ++0.1074 +0.0620 +0.7996 +0.0310 ++0.0465 +0.1412 +0.0155 +0.7968 + ++0.8225 +0.0862 +0.0481 +0.0431 ++0.0647 +0.8193 +0.0216 +0.0944 ++0.1444 +0.0862 +0.7263 +0.0431 ++0.0647 +0.1889 +0.0216 +0.7249 + ++0.7717 +0.1120 +0.0602 +0.0560 ++0.0840 +0.7705 +0.0280 +0.1175 ++0.1806 +0.1120 +0.6513 +0.0560 ++0.0840 +0.2349 +0.0280 +0.6530 + ++0.7197 +0.1391 +0.0717 +0.0696 ++0.1043 +0.7219 +0.0348 +0.1390 ++0.2150 +0.1391 +0.5764 +0.0696 ++0.1043 +0.2779 +0.0348 +0.5830 + ++0.6671 +0.1672 +0.0821 +0.0836 ++0.1254 +0.6745 +0.0418 +0.1584 ++0.2464 +0.1672 +0.5029 +0.0836 ++0.1254 +0.3168 +0.0418 +0.5161 + ++0.6147 +0.1959 +0.0914 +0.0980 ++0.1470 +0.6288 +0.0490 +0.1752 ++0.2741 +0.1959 +0.4320 +0.0980 ++0.1470 +0.3505 +0.0490 +0.4536 + ++0.5631 +0.2252 +0.0991 +0.1126 ++0.1689 +0.5856 +0.0563 +0.1891 ++0.2972 +0.2252 +0.3649 +0.1126 ++0.1689 +0.3783 +0.0563 +0.3965 + ++0.5127 +0.2548 +0.1050 +0.1274 ++0.1911 +0.5454 +0.0637 +0.1998 ++0.3151 +0.2548 +0.3027 +0.1274 ++0.1911 +0.3996 +0.0637 +0.3456 + ++0.4644 +0.2844 +0.1090 +0.1422 ++0.2133 +0.5086 +0.0711 +0.2070 ++0.3271 +0.2844 +0.2464 +0.1422 ++0.2133 +0.4140 +0.0711 +0.3016 + ++0.4188 +0.3135 +0.1109 +0.1568 ++0.2351 +0.4758 +0.0784 +0.2107 ++0.3326 +0.3135 +0.1971 +0.1568 ++0.2351 +0.4213 +0.0784 +0.2651 + ++0.3768 +0.3419 +0.1104 +0.1709 ++0.2564 +0.4473 +0.0855 +0.2108 ++0.3311 +0.3419 +0.1561 +0.1709 ++0.2564 +0.4217 +0.0855 +0.2365 + ++0.3396 +0.3686 +0.1075 +0.1843 ++0.2764 +0.4236 +0.0921 +0.2078 ++0.3225 +0.3686 +0.1246 +0.1843 ++0.2764 +0.4156 +0.0921 +0.2158 + ++0.3096 +0.3919 +0.1026 +0.1959 ++0.2939 +0.4056 +0.0980 +0.2025 ++0.3077 +0.3919 +0.1045 +0.1959 ++0.2939 +0.4050 +0.0980 +0.2031 + +[2] CLV 5: [ {(0.00094,0.00187,0.00000,0.00234),(0.00409,0.00814,0.00004,0.01013),(0.00817,0.01614,0.00016,0.02001),(0.01296,0.02540,0.00041,0.03132),(0.01838,0.03571,0.00084,0.04377),(0.02440,0.04694,0.00150,0.05715),(0.03105,0.05905,0.00247,0.07134),(0.03834,0.07198,0.00384,0.08624),(0.04635,0.08575,0.00573,0.10174),(0.05517,0.10034,0.00833,0.11775),(0.06494,0.11580,0.01188,0.13419),(0.07588,0.13216,0.01678,0.15094),(0.08836,0.14951,0.02371,0.16781),(0.10304,0.16795,0.03398,0.18452),(0.12139,0.18759,0.05072,0.20042),(0.14866,0.20800,0.08645,0.21322)} 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{(0.00047,0.00000,0.00000,0.00070),(0.00204,0.00002,0.00002,0.00305),(0.00407,0.00006,0.00006,0.00604),(0.00644,0.00016,0.00016,0.00948),(0.00910,0.00033,0.00033,0.01329),(0.01204,0.00058,0.00059,0.01743),(0.01526,0.00096,0.00097,0.02185),(0.01875,0.00149,0.00150,0.02654),(0.02254,0.00221,0.00223,0.03146),(0.02665,0.00319,0.00323,0.03662),(0.03112,0.00452,0.00459,0.04196),(0.03601,0.00633,0.00646,0.04748),(0.04139,0.00886,0.00907,0.05309),(0.04742,0.01253,0.01289,0.05867),(0.05434,0.01835,0.01900,0.06385),(0.06261,0.03011,0.03150,0.06703)} {(0.00000,0.00117,0.00000,0.00234),(0.00001,0.00507,0.00001,0.01010),(0.00003,0.01005,0.00003,0.01988),(0.00009,0.01576,0.00009,0.03100),(0.00018,0.02209,0.00018,0.04311),(0.00032,0.02893,0.00032,0.05598),(0.00054,0.03624,0.00054,0.06943),(0.00084,0.04396,0.00084,0.08327),(0.00127,0.05207,0.00127,0.09732),(0.00186,0.06054,0.00186,0.11138),(0.00269,0.06932,0.00269,0.12516),(0.00386,0.07836,0.00386,0.13827),(0.00557,0.08757,0.00557,0.15009),(0.00819,0.09676,0.00819,0.15946),(0.01272,0.10539,0.01272,0.16373),(0.02345,0.11086,0.02345,0.15300)} {(0.00000,0.00000,0.99367,0.00000),(0.00001,0.00000,0.97245,0.00000),(0.00003,0.00000,0.94515,0.00000),(0.00007,0.00001,0.91335,0.00001),(0.00013,0.00002,0.87765,0.00002),(0.00024,0.00004,0.83831,0.00004),(0.00039,0.00007,0.79541,0.00007),(0.00059,0.00011,0.74888,0.00011),(0.00087,0.00016,0.69853,0.00016),(0.00125,0.00023,0.64404,0.00023),(0.00174,0.00034,0.58486,0.00034),(0.00240,0.00048,0.52019,0.00048),(0.00328,0.00070,0.44867,0.00070),(0.00451,0.00102,0.36795,0.00102),(0.00631,0.00159,0.27301,0.00159),(0.00940,0.00293,0.14763,0.00293)} 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{(0.99601,0.00000,0.00000,0.00000),(0.98258,0.00001,0.00006,0.00001),(0.96520,0.00004,0.00024,0.00004),(0.94476,0.00010,0.00060,0.00010),(0.92157,0.00020,0.00121,0.00020),(0.89571,0.00036,0.00214,0.00036),(0.86711,0.00060,0.00348,0.00060),(0.83558,0.00095,0.00534,0.00095),(0.80082,0.00143,0.00786,0.00143),(0.76234,0.00210,0.01122,0.00210),(0.71945,0.00303,0.01567,0.00303),(0.67103,0.00435,0.02158,0.00435),(0.61528,0.00627,0.02953,0.00627),(0.54884,0.00922,0.04055,0.00922),(0.46422,0.01431,0.05676,0.01431),(0.33429,0.02638,0.08463,0.02638)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99601,0.00000,0.00000,0.00000),(0.98258,0.00001,0.00006,0.00001),(0.96520,0.00004,0.00024,0.00004),(0.94476,0.00010,0.00060,0.00010),(0.92157,0.00020,0.00121,0.00020),(0.89571,0.00036,0.00214,0.00036),(0.86711,0.00060,0.00348,0.00060),(0.83558,0.00095,0.00534,0.00095),(0.80082,0.00143,0.00786,0.00143),(0.76234,0.00210,0.01122,0.00210),(0.71945,0.00303,0.01567,0.00303),(0.67103,0.00435,0.02158,0.00435),(0.61528,0.00627,0.02953,0.00627),(0.54884,0.00922,0.04055,0.00922),(0.46422,0.01431,0.05676,0.01431),(0.33429,0.02638,0.08463,0.02638)} {(0.00000,0.00000,0.00000,0.99344),(0.00000,0.00003,0.00000,0.97147),(0.00002,0.00010,0.00002,0.94332),(0.00004,0.00026,0.00004,0.91063),(0.00009,0.00053,0.00009,0.87409),(0.00016,0.00094,0.00016,0.83404),(0.00027,0.00152,0.00027,0.79059),(0.00042,0.00233,0.00042,0.74378),(0.00063,0.00341,0.00063,0.69348),(0.00093,0.00485,0.00093,0.63947),(0.00135,0.00674,0.00135,0.58135),(0.00193,0.00922,0.00193,0.51848),(0.00278,0.01252,0.00278,0.44978),(0.00410,0.01703,0.00410,0.37332),(0.00636,0.02352,0.00636,0.28489),(0.01173,0.03436,0.01173,0.17033)} {(0.00000,0.00000,0.00000,0.99344),(0.00000,0.00003,0.00000,0.97147),(0.00002,0.00010,0.00002,0.94332),(0.00004,0.00026,0.00004,0.91063),(0.00009,0.00053,0.00009,0.87409),(0.00016,0.00094,0.00016,0.83404),(0.00027,0.00152,0.00027,0.79059),(0.00042,0.00233,0.00042,0.74378),(0.00063,0.00341,0.00063,0.69348),(0.00093,0.00485,0.00093,0.63947),(0.00135,0.00674,0.00135,0.58135),(0.00193,0.00922,0.00193,0.51848),(0.00278,0.01252,0.00278,0.44978),(0.00410,0.01703,0.00410,0.37332),(0.00636,0.02352,0.00636,0.28489),(0.01173,0.03436,0.01173,0.17033)} {(0.00000,0.00023,0.00094,0.00000),(0.00001,0.00102,0.00406,0.00001),(0.00004,0.00203,0.00806,0.00004),(0.00011,0.00321,0.01266,0.00011),(0.00022,0.00454,0.01776,0.00022),(0.00039,0.00600,0.02330,0.00039),(0.00064,0.00760,0.02922,0.00064),(0.00100,0.00934,0.03550,0.00099),(0.00149,0.01122,0.04211,0.00147),(0.00216,0.01327,0.04899,0.00213),(0.00306,0.01549,0.05612,0.00301),(0.00430,0.01794,0.06341,0.00422),(0.00605,0.02065,0.07070,0.00591),(0.00859,0.02373,0.07766,0.00835),(0.01267,0.02740,0.08334,0.01223),(0.02100,0.03238,0.08321,0.02007)} 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{(0.00094,0.00070,0.00000,0.00000),(0.00409,0.00306,0.00003,0.00003),(0.00814,0.00610,0.00013,0.00013),(0.01287,0.00964,0.00032,0.00032),(0.01820,0.01362,0.00066,0.00066),(0.02408,0.01801,0.00118,0.00117),(0.03051,0.02281,0.00193,0.00192),(0.03750,0.02802,0.00300,0.00297),(0.04508,0.03367,0.00447,0.00442),(0.05330,0.03980,0.00647,0.00638),(0.06224,0.04648,0.00918,0.00903),(0.07201,0.05381,0.01291,0.01266),(0.08279,0.06195,0.01814,0.01772),(0.09484,0.07119,0.02578,0.02506),(0.10867,0.08220,0.03800,0.03670),(0.12521,0.09714,0.06300,0.06021)} {(0.00047,0.00000,0.00000,0.00070),(0.00204,0.00002,0.00002,0.00305),(0.00407,0.00006,0.00006,0.00604),(0.00644,0.00016,0.00016,0.00948),(0.00910,0.00033,0.00033,0.01329),(0.01204,0.00058,0.00059,0.01743),(0.01526,0.00096,0.00097,0.02185),(0.01875,0.00149,0.00150,0.02654),(0.02254,0.00221,0.00223,0.03146),(0.02665,0.00319,0.00323,0.03662),(0.03112,0.00452,0.00459,0.04196),(0.03601,0.00633,0.00646,0.04748),(0.04139,0.00886,0.00907,0.05309),(0.04742,0.01253,0.01289,0.05867),(0.05434,0.01835,0.01900,0.06385),(0.06261,0.03011,0.03150,0.06703)} {(0.00000,0.00000,0.00000,0.99344),(0.00000,0.00003,0.00000,0.97147),(0.00002,0.00010,0.00002,0.94332),(0.00004,0.00026,0.00004,0.91063),(0.00009,0.00053,0.00009,0.87409),(0.00016,0.00094,0.00016,0.83404),(0.00027,0.00152,0.00027,0.79059),(0.00042,0.00233,0.00042,0.74378),(0.00063,0.00341,0.00063,0.69348),(0.00093,0.00485,0.00093,0.63947),(0.00135,0.00674,0.00135,0.58135),(0.00193,0.00922,0.00193,0.51848),(0.00278,0.01252,0.00278,0.44978),(0.00410,0.01703,0.00410,0.37332),(0.00636,0.02352,0.00636,0.28489),(0.01173,0.03436,0.01173,0.17033)} ] +[2] CLV 6: [ 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{(0.00000,0.00000,0.99367,0.00000),(0.00001,0.00000,0.97245,0.00000),(0.00003,0.00000,0.94515,0.00000),(0.00007,0.00001,0.91335,0.00001),(0.00013,0.00002,0.87765,0.00002),(0.00024,0.00004,0.83831,0.00004),(0.00039,0.00007,0.79541,0.00007),(0.00059,0.00011,0.74888,0.00011),(0.00087,0.00016,0.69853,0.00016),(0.00125,0.00023,0.64404,0.00023),(0.00174,0.00034,0.58486,0.00034),(0.00240,0.00048,0.52019,0.00048),(0.00328,0.00070,0.44867,0.00070),(0.00451,0.00102,0.36795,0.00102),(0.00631,0.00159,0.27301,0.00159),(0.00940,0.00293,0.14763,0.00293)} ] - TEST alpha(ncats) = 0.75(16) + + TEST alpha(ncats) = 0.75(16), mode = MEDIAN 0.012768 0.052396 0.105284 0.169090 0.243657 0.329712 0.428675 0.542743 0.675156 0.830724 1.016841 1.245582 1.538542 1.940413 2.572099 4.296318 [2] P-matrix for branch length 0.100000 @@ -4284,7 +8568,343 @@ [2] CLV 7: [ 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{(0.00000,0.99555,0.00000,0.00001),(0.00002,0.98192,0.00002,0.00010),(0.00007,0.96414,0.00007,0.00040),(0.00017,0.94328,0.00017,0.00101),(0.00034,0.91972,0.00034,0.00202),(0.00062,0.89356,0.00062,0.00358),(0.00102,0.86479,0.00102,0.00581),(0.00160,0.83328,0.00160,0.00889),(0.00242,0.79877,0.00242,0.01305),(0.00355,0.76088,0.00355,0.01856),(0.00514,0.71902,0.00514,0.02584),(0.00738,0.67224,0.00738,0.03547),(0.01067,0.61899,0.01067,0.04835),(0.01577,0.55632,0.01577,0.06611),(0.02473,0.47732,0.02473,0.09225),(0.05122,0.34117,0.05122,0.14376)} {(0.00099,0.00074,0.00000,0.00000),(0.00401,0.00301,0.00003,0.00003),(0.00796,0.00596,0.00012,0.00012),(0.01257,0.00941,0.00031,0.00031),(0.01776,0.01329,0.00063,0.00062),(0.02351,0.01759,0.00112,0.00111),(0.02980,0.02228,0.00184,0.00183),(0.03666,0.02739,0.00286,0.00283),(0.04411,0.03294,0.00426,0.00421),(0.05220,0.03898,0.00617,0.00609),(0.06104,0.04558,0.00878,0.00864),(0.07073,0.05284,0.01237,0.01214),(0.08148,0.06095,0.01743,0.01704),(0.09362,0.07025,0.02490,0.02421),(0.10780,0.08148,0.03708,0.03582),(0.12701,0.09914,0.06744,0.06436)} {(0.99580,0.00000,0.00000,0.00000),(0.98289,0.00001,0.00006,0.00001),(0.96599,0.00004,0.00023,0.00004),(0.94609,0.00009,0.00057,0.00009),(0.92348,0.00019,0.00115,0.00019),(0.89823,0.00035,0.00204,0.00035),(0.87028,0.00057,0.00332,0.00057),(0.83942,0.00090,0.00509,0.00090),(0.80533,0.00136,0.00750,0.00136),(0.76754,0.00200,0.01073,0.00200),(0.72531,0.00289,0.01501,0.00289),(0.67750,0.00415,0.02073,0.00415),(0.62219,0.00600,0.02848,0.00600),(0.55583,0.00887,0.03932,0.00887),(0.46995,0.01391,0.05560,0.01391),(0.31494,0.02881,0.08879,0.02881)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99580,0.00000,0.00000,0.00000),(0.98289,0.00001,0.00006,0.00001),(0.96599,0.00004,0.00023,0.00004),(0.94609,0.00009,0.00057,0.00009),(0.92348,0.00019,0.00115,0.00019),(0.89823,0.00035,0.00204,0.00035),(0.87028,0.00057,0.00332,0.00057),(0.83942,0.00090,0.00509,0.00090),(0.80533,0.00136,0.00750,0.00136),(0.76754,0.00200,0.01073,0.00200),(0.72531,0.00289,0.01501,0.00289),(0.67750,0.00415,0.02073,0.00415),(0.62219,0.00600,0.02848,0.00600),(0.55583,0.00887,0.03932,0.00887),(0.46995,0.01391,0.05560,0.01391),(0.31494,0.02881,0.08879,0.02881)} {(0.00000,0.00000,0.00000,0.99309),(0.00000,0.00003,0.00000,0.97197),(0.00002,0.00010,0.00002,0.94460),(0.00004,0.00025,0.00004,0.91274),(0.00009,0.00051,0.00009,0.87708),(0.00015,0.00089,0.00015,0.83791),(0.00026,0.00145,0.00026,0.79536),(0.00040,0.00222,0.00040,0.74942),(0.00060,0.00326,0.00060,0.69994),(0.00089,0.00464,0.00089,0.64667),(0.00128,0.00646,0.00128,0.58916),(0.00185,0.00887,0.00185,0.52670),(0.00267,0.01209,0.00267,0.45808),(0.00394,0.01653,0.00394,0.38108),(0.00618,0.02306,0.00618,0.29054),(0.01280,0.03594,0.01280,0.15565)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00123,0.00000,0.00246),(0.00001,0.00499,0.00001,0.00992),(0.00003,0.00982,0.00003,0.01944),(0.00008,0.01540,0.00008,0.03029),(0.00017,0.02157,0.00017,0.04214),(0.00031,0.02827,0.00031,0.05476),(0.00051,0.03544,0.00051,0.06798),(0.00080,0.04304,0.00080,0.08164),(0.00121,0.05104,0.00121,0.09557),(0.00178,0.05943,0.00178,0.10957),(0.00257,0.06816,0.00257,0.12339),(0.00369,0.07720,0.00369,0.13668),(0.00534,0.08650,0.00534,0.14882),(0.00788,0.09589,0.00788,0.15872),(0.01236,0.10492,0.01236,0.16372),(0.02561,0.11073,0.02561,0.14959)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.99580,0.00000,0.00000,0.00000),(0.98289,0.00001,0.00006,0.00001),(0.96599,0.00004,0.00023,0.00004),(0.94609,0.00009,0.00057,0.00009),(0.92348,0.00019,0.00115,0.00019),(0.89823,0.00035,0.00204,0.00035),(0.87028,0.00057,0.00332,0.00057),(0.83942,0.00090,0.00509,0.00090),(0.80533,0.00136,0.00750,0.00136),(0.76754,0.00200,0.01073,0.00200),(0.72531,0.00289,0.01501,0.00289),(0.67750,0.00415,0.02073,0.00415),(0.62219,0.00600,0.02848,0.00600),(0.55583,0.00887,0.03932,0.00887),(0.46995,0.01391,0.05560,0.01391),(0.31494,0.02881,0.08879,0.02881)} {(0.99580,0.00000,0.00000,0.00000),(0.98289,0.00001,0.00006,0.00001),(0.96599,0.00004,0.00023,0.00004),(0.94609,0.00009,0.00057,0.00009),(0.92348,0.00019,0.00115,0.00019),(0.89823,0.00035,0.00204,0.00035),(0.87028,0.00057,0.00332,0.00057),(0.83942,0.00090,0.00509,0.00090),(0.80533,0.00136,0.00750,0.00136),(0.76754,0.00200,0.01073,0.00200),(0.72531,0.00289,0.01501,0.00289),(0.67750,0.00415,0.02073,0.00415),(0.62219,0.00600,0.02848,0.00600),(0.55583,0.00887,0.03932,0.00887),(0.46995,0.01391,0.05560,0.01391),(0.31494,0.02881,0.08879,0.02881)} {(0.00000,0.00000,0.99333,0.00000),(0.00001,0.00000,0.97293,0.00000),(0.00003,0.00000,0.94640,0.00000),(0.00006,0.00001,0.91541,0.00001),(0.00013,0.00002,0.88058,0.00002),(0.00023,0.00004,0.84213,0.00004),(0.00037,0.00006,0.80013,0.00006),(0.00057,0.00010,0.75450,0.00010),(0.00083,0.00015,0.70502,0.00015),(0.00119,0.00022,0.65133,0.00022),(0.00167,0.00032,0.59285,0.00032),(0.00230,0.00046,0.52868,0.00046),(0.00316,0.00067,0.45736,0.00067),(0.00437,0.00099,0.37620,0.00099),(0.00618,0.00155,0.27913,0.00155),(0.00987,0.00320,0.13144,0.00320)} ] - TEST alpha(ncats) = 1.00(16) + TEST alpha(ncats) = 1.00(16), mode = MEAN + +0.032446 0.100603 0.173632 0.252284 0.337497 0.430468 0.532750 0.646419 0.774332 0.920577 1.091302 1.296381 1.553217 1.897082 2.419130 3.541880 +[3] P-matrix for branch length 0.100000 ++0.9973 +0.0013 +0.0008 +0.0006 ++0.0009 +0.9972 +0.0003 +0.0016 ++0.0024 +0.0013 +0.9958 +0.0006 ++0.0009 +0.0031 +0.0003 +0.9956 + ++0.9917 +0.0039 +0.0024 +0.0019 ++0.0029 +0.9913 +0.0010 +0.0048 ++0.0073 +0.0039 +0.9869 +0.0019 ++0.0029 +0.0097 +0.0010 +0.9864 + ++0.9858 +0.0067 +0.0041 +0.0033 ++0.0050 +0.9850 +0.0017 +0.0083 ++0.0124 +0.0067 +0.9775 +0.0033 ++0.0050 +0.0166 +0.0017 +0.9768 + ++0.9795 +0.0097 +0.0060 +0.0048 ++0.0073 +0.9784 +0.0024 +0.0119 ++0.0179 +0.0097 +0.9675 +0.0048 ++0.0073 +0.0239 +0.0024 +0.9665 + ++0.9727 +0.0129 +0.0079 +0.0064 ++0.0097 +0.9713 +0.0032 +0.0158 ++0.0238 +0.0129 +0.9569 +0.0064 ++0.0097 +0.0316 +0.0032 +0.9555 + ++0.9654 +0.0164 +0.0100 +0.0082 ++0.0123 +0.9636 +0.0041 +0.0200 ++0.0301 +0.0164 +0.9453 +0.0082 ++0.0123 +0.0400 +0.0041 +0.9437 + ++0.9575 +0.0202 +0.0123 +0.0101 ++0.0151 +0.9554 +0.0050 +0.0245 ++0.0369 +0.0202 +0.9329 +0.0101 ++0.0151 +0.0490 +0.0050 +0.9309 + ++0.9487 +0.0243 +0.0148 +0.0122 ++0.0182 +0.9463 +0.0061 +0.0294 ++0.0443 +0.0243 +0.9192 +0.0122 ++0.0182 +0.0587 +0.0061 +0.9170 + ++0.9391 +0.0290 +0.0175 +0.0145 ++0.0217 +0.9363 +0.0072 +0.0347 ++0.0524 +0.0290 +0.9041 +0.0145 ++0.0217 +0.0694 +0.0072 +0.9016 + ++0.9282 +0.0342 +0.0205 +0.0171 ++0.0256 +0.9251 +0.0085 +0.0407 ++0.0615 +0.0342 +0.8872 +0.0171 ++0.0256 +0.0813 +0.0085 +0.8845 + ++0.9158 +0.0402 +0.0239 +0.0201 ++0.0302 +0.9124 +0.0101 +0.0474 ++0.0717 +0.0402 +0.8680 +0.0201 ++0.0302 +0.0948 +0.0101 +0.8650 + ++0.9012 +0.0473 +0.0279 +0.0237 ++0.0355 +0.8976 +0.0118 +0.0551 ++0.0836 +0.0473 +0.8455 +0.0237 ++0.0355 +0.1103 +0.0118 +0.8424 + ++0.8834 +0.0560 +0.0326 +0.0280 ++0.0420 +0.8796 +0.0140 +0.0644 ++0.0978 +0.0560 +0.8182 +0.0280 ++0.0420 +0.1288 +0.0140 +0.8153 + ++0.8605 +0.0673 +0.0386 +0.0336 ++0.0505 +0.8567 +0.0168 +0.0760 ++0.1157 +0.0673 +0.7833 +0.0336 ++0.0505 +0.1520 +0.0168 +0.7807 + ++0.8275 +0.0837 +0.0469 +0.0419 ++0.0628 +0.8242 +0.0209 +0.0921 ++0.1407 +0.0837 +0.7337 +0.0419 ++0.0628 +0.1842 +0.0209 +0.7321 + ++0.7633 +0.1164 +0.0621 +0.0582 ++0.0873 +0.7625 +0.0291 +0.1211 ++0.1864 +0.1164 +0.6390 +0.0582 ++0.0873 +0.2422 +0.0291 +0.6414 + + +[3] P-matrix for branch length 0.200000 ++0.9947 +0.0025 +0.0016 +0.0013 ++0.0019 +0.9944 +0.0006 +0.0031 ++0.0047 +0.0025 +0.9915 +0.0013 ++0.0019 +0.0063 +0.0006 +0.9912 + ++0.9836 +0.0077 +0.0048 +0.0039 ++0.0058 +0.9827 +0.0019 +0.0096 ++0.0144 +0.0077 +0.9740 +0.0039 ++0.0058 +0.0191 +0.0019 +0.9731 + ++0.9720 +0.0133 +0.0082 +0.0066 ++0.0099 +0.9705 +0.0033 +0.0163 ++0.0245 +0.0133 +0.9556 +0.0066 ++0.0099 +0.0325 +0.0033 +0.9542 + ++0.9596 +0.0191 +0.0117 +0.0096 ++0.0143 +0.9576 +0.0048 +0.0233 ++0.0350 +0.0191 +0.9363 +0.0096 ++0.0143 +0.0465 +0.0048 +0.9344 + ++0.9466 +0.0254 +0.0154 +0.0127 ++0.0190 +0.9441 +0.0063 +0.0306 ++0.0461 +0.0254 +0.9158 +0.0127 ++0.0190 +0.0611 +0.0063 +0.9135 + ++0.9326 +0.0321 +0.0193 +0.0160 ++0.0241 +0.9297 +0.0080 +0.0383 ++0.0578 +0.0321 +0.8941 +0.0160 ++0.0241 +0.0765 +0.0080 +0.8914 + ++0.9176 +0.0393 +0.0234 +0.0197 ++0.0295 +0.9143 +0.0098 +0.0464 ++0.0702 +0.0393 +0.8709 +0.0197 ++0.0295 +0.0928 +0.0098 +0.8679 + ++0.9014 +0.0472 +0.0278 +0.0236 ++0.0354 +0.8978 +0.0118 +0.0550 ++0.0834 +0.0472 +0.8458 +0.0236 ++0.0354 +0.1100 +0.0118 +0.8428 + ++0.8837 +0.0558 +0.0325 +0.0279 ++0.0419 +0.8799 +0.0140 +0.0642 ++0.0975 +0.0558 +0.8187 +0.0279 ++0.0419 +0.1284 +0.0140 +0.8157 + ++0.8642 +0.0655 +0.0376 +0.0327 ++0.0491 +0.8604 +0.0164 +0.0742 ++0.1129 +0.0655 +0.7889 +0.0327 ++0.0491 +0.1483 +0.0164 +0.7862 + ++0.8422 +0.0764 +0.0432 +0.0382 ++0.0573 +0.8386 +0.0191 +0.0850 ++0.1297 +0.0764 +0.7557 +0.0382 ++0.0573 +0.1700 +0.0191 +0.7536 + ++0.8170 +0.0890 +0.0495 +0.0445 ++0.0668 +0.8139 +0.0223 +0.0970 ++0.1485 +0.0890 +0.7180 +0.0445 ++0.0668 +0.1941 +0.0223 +0.7169 + ++0.7871 +0.1041 +0.0566 +0.0521 ++0.0781 +0.7852 +0.0260 +0.1107 ++0.1699 +0.1041 +0.6738 +0.0521 ++0.0781 +0.2214 +0.0260 +0.6745 + ++0.7500 +0.1233 +0.0651 +0.0616 ++0.0924 +0.7500 +0.0308 +0.1267 ++0.1953 +0.1233 +0.6198 +0.0616 ++0.0924 +0.2534 +0.0308 +0.6233 + ++0.6992 +0.1499 +0.0759 +0.0750 ++0.1124 +0.7033 +0.0375 +0.1468 ++0.2276 +0.1499 +0.5475 +0.0750 ++0.1124 +0.2936 +0.0375 +0.5564 + ++0.6094 +0.1989 +0.0922 +0.0995 ++0.1492 +0.6243 +0.0497 +0.1768 ++0.2767 +0.1989 +0.4250 +0.0995 ++0.1492 +0.3536 +0.0497 +0.4475 + + +[3] P-matrix for branch length 1.000000 ++0.9738 +0.0124 +0.0076 +0.0062 ++0.0093 +0.9724 +0.0031 +0.0152 ++0.0229 +0.0124 +0.9585 +0.0062 ++0.0093 +0.0305 +0.0031 +0.9571 + ++0.9220 +0.0372 +0.0222 +0.0186 ++0.0279 +0.9187 +0.0093 +0.0441 ++0.0666 +0.0372 +0.8775 +0.0186 ++0.0279 +0.0881 +0.0093 +0.8747 + ++0.8711 +0.0621 +0.0358 +0.0310 ++0.0465 +0.8673 +0.0155 +0.0707 ++0.1075 +0.0621 +0.7994 +0.0310 ++0.0465 +0.1413 +0.0155 +0.7966 + ++0.8212 +0.0869 +0.0485 +0.0434 ++0.0652 +0.8180 +0.0217 +0.0951 ++0.1454 +0.0869 +0.7242 +0.0434 ++0.0652 +0.1901 +0.0217 +0.7230 + ++0.7723 +0.1118 +0.0601 +0.0559 ++0.0838 +0.7710 +0.0279 +0.1172 ++0.1803 +0.1118 +0.6521 +0.0559 ++0.0838 +0.2345 +0.0279 +0.6538 + ++0.7244 +0.1366 +0.0707 +0.0683 ++0.1025 +0.7262 +0.0342 +0.1371 ++0.2120 +0.1366 +0.5830 +0.0683 ++0.1025 +0.2742 +0.0342 +0.5891 + ++0.6776 +0.1615 +0.0801 +0.0808 ++0.1211 +0.6837 +0.0404 +0.1547 ++0.2404 +0.1615 +0.5173 +0.0808 ++0.1211 +0.3095 +0.0404 +0.5290 + ++0.6318 +0.1864 +0.0885 +0.0932 ++0.1398 +0.6435 +0.0466 +0.1700 ++0.2655 +0.1864 +0.4548 +0.0932 ++0.1398 +0.3400 +0.0466 +0.4735 + ++0.5873 +0.2114 +0.0956 +0.1057 ++0.1585 +0.6056 +0.0528 +0.1830 ++0.2869 +0.2114 +0.3960 +0.1057 ++0.1585 +0.3659 +0.0528 +0.4227 + ++0.5439 +0.2364 +0.1015 +0.1182 ++0.1773 +0.5701 +0.0591 +0.1935 ++0.3046 +0.2364 +0.3408 +0.1182 ++0.1773 +0.3871 +0.0591 +0.3766 + ++0.5019 +0.2614 +0.1061 +0.1307 ++0.1960 +0.5370 +0.0653 +0.2017 ++0.3183 +0.2614 +0.2897 +0.1307 ++0.1960 +0.4034 +0.0653 +0.3353 + ++0.4612 +0.2864 +0.1092 +0.1432 ++0.2148 +0.5062 +0.0716 +0.2074 ++0.3277 +0.2864 +0.2427 +0.1432 ++0.2148 +0.4147 +0.0716 +0.2989 + ++0.4220 +0.3115 +0.1108 +0.1557 ++0.2336 +0.4780 +0.0779 +0.2105 ++0.3324 +0.3115 +0.2004 +0.1557 ++0.2336 +0.4210 +0.0779 +0.2675 + ++0.3845 +0.3366 +0.1107 +0.1683 ++0.2524 +0.4523 +0.0841 +0.2111 ++0.3320 +0.3366 +0.1632 +0.1683 ++0.2524 +0.4221 +0.0841 +0.2413 + ++0.3488 +0.3618 +0.1085 +0.1809 ++0.2714 +0.4293 +0.0905 +0.2089 ++0.3255 +0.3618 +0.1318 +0.1809 ++0.2714 +0.4178 +0.0905 +0.2204 + ++0.3155 +0.3872 +0.1038 +0.1936 ++0.2904 +0.4090 +0.0968 +0.2038 ++0.3114 +0.3872 +0.1079 +0.1936 ++0.2904 +0.4076 +0.0968 +0.2052 + + +[3] P-matrix for branch length 1.000000 ++0.9738 +0.0124 +0.0076 +0.0062 ++0.0093 +0.9724 +0.0031 +0.0152 ++0.0229 +0.0124 +0.9585 +0.0062 ++0.0093 +0.0305 +0.0031 +0.9571 + ++0.9220 +0.0372 +0.0222 +0.0186 ++0.0279 +0.9187 +0.0093 +0.0441 ++0.0666 +0.0372 +0.8775 +0.0186 ++0.0279 +0.0881 +0.0093 +0.8747 + ++0.8711 +0.0621 +0.0358 +0.0310 ++0.0465 +0.8673 +0.0155 +0.0707 ++0.1075 +0.0621 +0.7994 +0.0310 ++0.0465 +0.1413 +0.0155 +0.7966 + ++0.8212 +0.0869 +0.0485 +0.0434 ++0.0652 +0.8180 +0.0217 +0.0951 ++0.1454 +0.0869 +0.7242 +0.0434 ++0.0652 +0.1901 +0.0217 +0.7230 + ++0.7723 +0.1118 +0.0601 +0.0559 ++0.0838 +0.7710 +0.0279 +0.1172 ++0.1803 +0.1118 +0.6521 +0.0559 ++0.0838 +0.2345 +0.0279 +0.6538 + ++0.7244 +0.1366 +0.0707 +0.0683 ++0.1025 +0.7262 +0.0342 +0.1371 ++0.2120 +0.1366 +0.5830 +0.0683 ++0.1025 +0.2742 +0.0342 +0.5891 + ++0.6776 +0.1615 +0.0801 +0.0808 ++0.1211 +0.6837 +0.0404 +0.1547 ++0.2404 +0.1615 +0.5173 +0.0808 ++0.1211 +0.3095 +0.0404 +0.5290 + ++0.6318 +0.1864 +0.0885 +0.0932 ++0.1398 +0.6435 +0.0466 +0.1700 ++0.2655 +0.1864 +0.4548 +0.0932 ++0.1398 +0.3400 +0.0466 +0.4735 + ++0.5873 +0.2114 +0.0956 +0.1057 ++0.1585 +0.6056 +0.0528 +0.1830 ++0.2869 +0.2114 +0.3960 +0.1057 ++0.1585 +0.3659 +0.0528 +0.4227 + ++0.5439 +0.2364 +0.1015 +0.1182 ++0.1773 +0.5701 +0.0591 +0.1935 ++0.3046 +0.2364 +0.3408 +0.1182 ++0.1773 +0.3871 +0.0591 +0.3766 + ++0.5019 +0.2614 +0.1061 +0.1307 ++0.1960 +0.5370 +0.0653 +0.2017 ++0.3183 +0.2614 +0.2897 +0.1307 ++0.1960 +0.4034 +0.0653 +0.3353 + ++0.4612 +0.2864 +0.1092 +0.1432 ++0.2148 +0.5062 +0.0716 +0.2074 ++0.3277 +0.2864 +0.2427 +0.1432 ++0.2148 +0.4147 +0.0716 +0.2989 + ++0.4220 +0.3115 +0.1108 +0.1557 ++0.2336 +0.4780 +0.0779 +0.2105 ++0.3324 +0.3115 +0.2004 +0.1557 ++0.2336 +0.4210 +0.0779 +0.2675 + ++0.3845 +0.3366 +0.1107 +0.1683 ++0.2524 +0.4523 +0.0841 +0.2111 ++0.3320 +0.3366 +0.1632 +0.1683 ++0.2524 +0.4221 +0.0841 +0.2413 + ++0.3488 +0.3618 +0.1085 +0.1809 ++0.2714 +0.4293 +0.0905 +0.2089 ++0.3255 +0.3618 +0.1318 +0.1809 ++0.2714 +0.4178 +0.0905 +0.2204 + ++0.3155 +0.3872 +0.1038 +0.1936 ++0.2904 +0.4090 +0.0968 +0.2038 ++0.3114 +0.3872 +0.1079 +0.1936 ++0.2904 +0.4076 +0.0968 +0.2052 + + +[3] CLV 5: [ {(0.00250,0.00498,0.00001,0.00621),(0.00764,0.01510,0.00014,0.01873),(0.01298,0.02543,0.00041,0.03136),(0.01853,0.03600,0.00085,0.04412),(0.02434,0.04682,0.00149,0.05701),(0.03043,0.05793,0.00237,0.07005),(0.03685,0.06936,0.00353,0.08324),(0.04365,0.08115,0.00505,0.09660),(0.05091,0.09336,0.00701,0.11015),(0.05872,0.10606,0.00954,0.12390),(0.06725,0.11934,0.01283,0.13787),(0.07669,0.13333,0.01718,0.15210),(0.08740,0.14823,0.02312,0.16660),(0.10004,0.16437,0.03167,0.18138),(0.11608,0.18233,0.04537,0.19640),(0.14100,0.20351,0.07482,0.21098)} {(0.98936,0.00000,0.00002,0.00000),(0.96747,0.00003,0.00021,0.00003),(0.94469,0.00010,0.00060,0.00010),(0.92091,0.00021,0.00123,0.00021),(0.89599,0.00036,0.00213,0.00036),(0.86978,0.00058,0.00334,0.00058),(0.84206,0.00087,0.00493,0.00087),(0.81258,0.00125,0.00695,0.00125),(0.78097,0.00175,0.00952,0.00175),(0.74676,0.00241,0.01275,0.00241),(0.70927,0.00328,0.01683,0.00328),(0.66745,0.00446,0.02205,0.00446),(0.61959,0.00610,0.02888,0.00610),(0.56251,0.00855,0.03816,0.00855),(0.48892,0.01264,0.05181,0.01264),(0.37137,0.02226,0.07654,0.02226)} {(0.00250,0.00187,0.00001,0.00001),(0.00761,0.00570,0.00011,0.00011),(0.01289,0.00965,0.00032,0.00032),(0.01835,0.01373,0.00067,0.00067),(0.02402,0.01797,0.00117,0.00116),(0.02991,0.02236,0.00185,0.00184),(0.03607,0.02696,0.00276,0.00273),(0.04253,0.03177,0.00393,0.00389),(0.04935,0.03685,0.00545,0.00538),(0.05658,0.04225,0.00739,0.00728),(0.06433,0.04804,0.00991,0.00974),(0.07272,0.05434,0.01322,0.01296),(0.08198,0.06133,0.01770,0.01729),(0.09244,0.06933,0.02408,0.02342),(0.10484,0.07908,0.03413,0.03302),(0.12122,0.09314,0.05503,0.05275)} {(0.00001,0.98875,0.00001,0.00004),(0.00006,0.96569,0.00006,0.00037),(0.00018,0.94182,0.00018,0.00106),(0.00037,0.91705,0.00037,0.00216),(0.00064,0.89125,0.00064,0.00374),(0.00103,0.86428,0.00103,0.00585),(0.00155,0.83597,0.00155,0.00860),(0.00223,0.80608,0.00223,0.01210),(0.00312,0.77430,0.00312,0.01650),(0.00429,0.74022,0.00429,0.02200),(0.00583,0.70325,0.00583,0.02891),(0.00792,0.66250,0.00792,0.03767),(0.01085,0.61650,0.01085,0.04900),(0.01519,0.56256,0.01519,0.06421),(0.02248,0.49457,0.02248,0.08621),(0.03957,0.38974,0.03957,0.12502)} {(0.00125,0.00001,0.00001,0.00187),(0.00381,0.00006,0.00006,0.00565),(0.00644,0.00016,0.00016,0.00949),(0.00918,0.00033,0.00033,0.01340),(0.01201,0.00058,0.00059,0.01738),(0.01496,0.00092,0.00093,0.02144),(0.01804,0.00137,0.00138,0.02559),(0.02127,0.00195,0.00197,0.02983),(0.02467,0.00269,0.00272,0.03416),(0.02829,0.00364,0.00370,0.03861),(0.03216,0.00487,0.00495,0.04317),(0.03636,0.00648,0.00661,0.04786),(0.04099,0.00865,0.00885,0.05268),(0.04622,0.01171,0.01204,0.05762),(0.05242,0.01651,0.01706,0.06257),(0.06061,0.02638,0.02752,0.06676)} {(0.00000,0.00311,0.00000,0.00620),(0.00003,0.00940,0.00003,0.01862),(0.00009,0.01578,0.00009,0.03104),(0.00018,0.02227,0.00018,0.04345),(0.00032,0.02886,0.00032,0.05585),(0.00051,0.03557,0.00051,0.06820),(0.00077,0.04240,0.00077,0.08050),(0.00111,0.04938,0.00111,0.09271),(0.00156,0.05651,0.00156,0.10477),(0.00214,0.06381,0.00214,0.11661),(0.00292,0.07129,0.00292,0.12813),(0.00396,0.07899,0.00396,0.13914),(0.00542,0.08690,0.00542,0.14931),(0.00760,0.09503,0.00760,0.15796),(0.01124,0.10325,0.01124,0.16338),(0.01978,0.11037,0.01978,0.15823)} {(0.00000,0.00000,0.98314,0.00000),(0.00002,0.00000,0.94871,0.00000),(0.00007,0.00001,0.91325,0.00001),(0.00014,0.00002,0.87664,0.00002),(0.00024,0.00004,0.83874,0.00004),(0.00037,0.00006,0.79939,0.00006),(0.00055,0.00010,0.75838,0.00010),(0.00077,0.00014,0.71545,0.00014),(0.00106,0.00019,0.67026,0.00019),(0.00142,0.00027,0.62235,0.00027),(0.00187,0.00036,0.57107,0.00036),(0.00245,0.00050,0.51549,0.00050),(0.00321,0.00068,0.45407,0.00068),(0.00424,0.00095,0.38413,0.00095),(0.00576,0.00140,0.29975,0.00140),(0.00850,0.00247,0.18059,0.00247)} {(0.00001,0.98875,0.00001,0.00004),(0.00006,0.96569,0.00006,0.00037),(0.00018,0.94182,0.00018,0.00106),(0.00037,0.91705,0.00037,0.00216),(0.00064,0.89125,0.00064,0.00374),(0.00103,0.86428,0.00103,0.00585),(0.00155,0.83597,0.00155,0.00860),(0.00223,0.80608,0.00223,0.01210),(0.00312,0.77430,0.00312,0.01650),(0.00429,0.74022,0.00429,0.02200),(0.00583,0.70325,0.00583,0.02891),(0.00792,0.66250,0.00792,0.03767),(0.01085,0.61650,0.01085,0.04900),(0.01519,0.56256,0.01519,0.06421),(0.02248,0.49457,0.02248,0.08621),(0.03957,0.38974,0.03957,0.12502)} {(0.00000,0.00001,0.00000,0.98254),(0.00001,0.00009,0.00001,0.94698),(0.00004,0.00026,0.00004,0.91052),(0.00009,0.00054,0.00009,0.87306),(0.00016,0.00093,0.00016,0.83447),(0.00026,0.00146,0.00026,0.79462),(0.00039,0.00215,0.00039,0.75332),(0.00056,0.00302,0.00056,0.71034),(0.00078,0.00412,0.00078,0.66541),(0.00107,0.00550,0.00107,0.61811),(0.00146,0.00723,0.00146,0.56789),(0.00198,0.00942,0.00198,0.51394),(0.00271,0.01225,0.00271,0.45494),(0.00380,0.01605,0.00380,0.38855),(0.00562,0.02155,0.00562,0.30963),(0.00989,0.03126,0.00989,0.20026)} {(0.98936,0.00000,0.00002,0.00000),(0.96747,0.00003,0.00021,0.00003),(0.94469,0.00010,0.00060,0.00010),(0.92091,0.00021,0.00123,0.00021),(0.89599,0.00036,0.00213,0.00036),(0.86978,0.00058,0.00334,0.00058),(0.84206,0.00087,0.00493,0.00087),(0.81258,0.00125,0.00695,0.00125),(0.78097,0.00175,0.00952,0.00175),(0.74676,0.00241,0.01275,0.00241),(0.70927,0.00328,0.01683,0.00328),(0.66745,0.00446,0.02205,0.00446),(0.61959,0.00610,0.02888,0.00610),(0.56251,0.00855,0.03816,0.00855),(0.48892,0.01264,0.05181,0.01264),(0.37137,0.02226,0.07654,0.02226)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.98936,0.00000,0.00002,0.00000),(0.96747,0.00003,0.00021,0.00003),(0.94469,0.00010,0.00060,0.00010),(0.92091,0.00021,0.00123,0.00021),(0.89599,0.00036,0.00213,0.00036),(0.86978,0.00058,0.00334,0.00058),(0.84206,0.00087,0.00493,0.00087),(0.81258,0.00125,0.00695,0.00125),(0.78097,0.00175,0.00952,0.00175),(0.74676,0.00241,0.01275,0.00241),(0.70927,0.00328,0.01683,0.00328),(0.66745,0.00446,0.02205,0.00446),(0.61959,0.00610,0.02888,0.00610),(0.56251,0.00855,0.03816,0.00855),(0.48892,0.01264,0.05181,0.01264),(0.37137,0.02226,0.07654,0.02226)} {(0.00000,0.00001,0.00000,0.98254),(0.00001,0.00009,0.00001,0.94698),(0.00004,0.00026,0.00004,0.91052),(0.00009,0.00054,0.00009,0.87306),(0.00016,0.00093,0.00016,0.83447),(0.00026,0.00146,0.00026,0.79462),(0.00039,0.00215,0.00039,0.75332),(0.00056,0.00302,0.00056,0.71034),(0.00078,0.00412,0.00078,0.66541),(0.00107,0.00550,0.00107,0.61811),(0.00146,0.00723,0.00146,0.56789),(0.00198,0.00942,0.00198,0.51394),(0.00271,0.01225,0.00271,0.45494),(0.00380,0.01605,0.00380,0.38855),(0.00562,0.02155,0.00562,0.30963),(0.00989,0.03126,0.00989,0.20026)} {(0.00000,0.00001,0.00000,0.98254),(0.00001,0.00009,0.00001,0.94698),(0.00004,0.00026,0.00004,0.91052),(0.00009,0.00054,0.00009,0.87306),(0.00016,0.00093,0.00016,0.83447),(0.00026,0.00146,0.00026,0.79462),(0.00039,0.00215,0.00039,0.75332),(0.00056,0.00302,0.00056,0.71034),(0.00078,0.00412,0.00078,0.66541),(0.00107,0.00550,0.00107,0.61811),(0.00146,0.00723,0.00146,0.56789),(0.00198,0.00942,0.00198,0.51394),(0.00271,0.01225,0.00271,0.45494),(0.00380,0.01605,0.00380,0.38855),(0.00562,0.02155,0.00562,0.30963),(0.00989,0.03126,0.00989,0.20026)} 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{(0.00001,0.98893,0.00001,0.00004),(0.00006,0.96635,0.00006,0.00035),(0.00017,0.94295,0.00017,0.00102),(0.00035,0.91864,0.00035,0.00208),(0.00062,0.89331,0.00062,0.00360),(0.00099,0.86681,0.00099,0.00564),(0.00149,0.83895,0.00149,0.00829),(0.00214,0.80950,0.00214,0.01167),(0.00300,0.77815,0.00300,0.01593),(0.00413,0.74447,0.00413,0.02127),(0.00562,0.70787,0.00562,0.02799),(0.00765,0.66742,0.00765,0.03655),(0.01049,0.62160,0.01049,0.04767),(0.01474,0.56755,0.01474,0.06272),(0.02200,0.49842,0.02200,0.08489),(0.04315,0.37339,0.04315,0.13136)} {(0.00000,0.00001,0.00000,0.98282),(0.00001,0.00009,0.00001,0.94799),(0.00004,0.00025,0.00004,0.91223),(0.00009,0.00052,0.00009,0.87546),(0.00015,0.00090,0.00015,0.83754),(0.00025,0.00141,0.00025,0.79832),(0.00037,0.00207,0.00037,0.75763),(0.00054,0.00292,0.00054,0.71523),(0.00075,0.00398,0.00075,0.67081),(0.00103,0.00532,0.00103,0.62396),(0.00141,0.00700,0.00141,0.57410),(0.00191,0.00914,0.00191,0.52037),(0.00262,0.01192,0.00262,0.46138),(0.00369,0.01568,0.00369,0.39455),(0.00550,0.02122,0.00550,0.31394),(0.01079,0.03284,0.01079,0.18476)} {(0.00000,0.00001,0.00000,0.98282),(0.00001,0.00009,0.00001,0.94799),(0.00004,0.00025,0.00004,0.91223),(0.00009,0.00052,0.00009,0.87546),(0.00015,0.00090,0.00015,0.83754),(0.00025,0.00141,0.00025,0.79832),(0.00037,0.00207,0.00037,0.75763),(0.00054,0.00292,0.00054,0.71523),(0.00075,0.00398,0.00075,0.67081),(0.00103,0.00532,0.00103,0.62396),(0.00141,0.00700,0.00141,0.57410),(0.00191,0.00914,0.00191,0.52037),(0.00262,0.01192,0.00262,0.46138),(0.00369,0.01568,0.00369,0.39455),(0.00550,0.02122,0.00550,0.31394),(0.01079,0.03284,0.01079,0.18476)} {(0.00000,0.00000,0.98341,0.00000),(0.00002,0.00000,0.94969,0.00000),(0.00006,0.00001,0.91492,0.00001),(0.00013,0.00002,0.87899,0.00002),(0.00023,0.00004,0.84176,0.00004),(0.00036,0.00006,0.80306,0.00006),(0.00053,0.00009,0.76268,0.00009),(0.00074,0.00013,0.72035,0.00013),(0.00102,0.00019,0.67571,0.00019),(0.00137,0.00026,0.62830,0.00026),(0.00181,0.00035,0.57744,0.00035),(0.00238,0.00048,0.52214,0.00048),(0.00312,0.00066,0.46081,0.00066),(0.00414,0.00092,0.39049,0.00092),(0.00566,0.00138,0.30439,0.00138),(0.00896,0.00270,0.16354,0.00270)} {(0.00001,0.98893,0.00001,0.00004),(0.00006,0.96635,0.00006,0.00035),(0.00017,0.94295,0.00017,0.00102),(0.00035,0.91864,0.00035,0.00208),(0.00062,0.89331,0.00062,0.00360),(0.00099,0.86681,0.00099,0.00564),(0.00149,0.83895,0.00149,0.00829),(0.00214,0.80950,0.00214,0.01167),(0.00300,0.77815,0.00300,0.01593),(0.00413,0.74447,0.00413,0.02127),(0.00562,0.70787,0.00562,0.02799),(0.00765,0.66742,0.00765,0.03655),(0.01049,0.62160,0.01049,0.04767),(0.01474,0.56755,0.01474,0.06272),(0.02200,0.49842,0.02200,0.08489),(0.04315,0.37339,0.04315,0.13136)} {(0.00246,0.00184,0.00001,0.00001),(0.00747,0.00559,0.00011,0.00011),(0.01264,0.00947,0.00031,0.00031),(0.01800,0.01347,0.00064,0.00064),(0.02357,0.01763,0.00112,0.00112),(0.02936,0.02195,0.00178,0.00177),(0.03543,0.02648,0.00265,0.00263),(0.04180,0.03122,0.00379,0.00375),(0.04852,0.03624,0.00525,0.00518),(0.05568,0.04158,0.00713,0.00703),(0.06337,0.04732,0.00957,0.00941),(0.07172,0.05358,0.01279,0.01254),(0.08096,0.06056,0.01716,0.01677),(0.09149,0.06860,0.02343,0.02281),(0.10417,0.07854,0.03349,0.03241),(0.12334,0.09520,0.05900,0.05647)} {(0.98953,0.00000,0.00002,0.00000),(0.96809,0.00003,0.00020,0.00003),(0.94577,0.00010,0.00058,0.00010),(0.92245,0.00020,0.00118,0.00020),(0.89799,0.00035,0.00205,0.00035),(0.87224,0.00056,0.00322,0.00056),(0.84499,0.00084,0.00474,0.00084),(0.81596,0.00120,0.00670,0.00120),(0.78481,0.00169,0.00918,0.00169),(0.75105,0.00232,0.01231,0.00232),(0.71398,0.00316,0.01629,0.00316),(0.67253,0.00430,0.02138,0.00430),(0.62493,0.00590,0.02807,0.00590),(0.56783,0.00829,0.03724,0.00829),(0.49314,0.01238,0.05098,0.01238),(0.35253,0.02427,0.08066,0.02427)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.98953,0.00000,0.00002,0.00000),(0.96809,0.00003,0.00020,0.00003),(0.94577,0.00010,0.00058,0.00010),(0.92245,0.00020,0.00118,0.00020),(0.89799,0.00035,0.00205,0.00035),(0.87224,0.00056,0.00322,0.00056),(0.84499,0.00084,0.00474,0.00084),(0.81596,0.00120,0.00670,0.00120),(0.78481,0.00169,0.00918,0.00169),(0.75105,0.00232,0.01231,0.00232),(0.71398,0.00316,0.01629,0.00316),(0.67253,0.00430,0.02138,0.00430),(0.62493,0.00590,0.02807,0.00590),(0.56783,0.00829,0.03724,0.00829),(0.49314,0.01238,0.05098,0.01238),(0.35253,0.02427,0.08066,0.02427)} {(0.00000,0.00001,0.00000,0.98282),(0.00001,0.00009,0.00001,0.94799),(0.00004,0.00025,0.00004,0.91223),(0.00009,0.00052,0.00009,0.87546),(0.00015,0.00090,0.00015,0.83754),(0.00025,0.00141,0.00025,0.79832),(0.00037,0.00207,0.00037,0.75763),(0.00054,0.00292,0.00054,0.71523),(0.00075,0.00398,0.00075,0.67081),(0.00103,0.00532,0.00103,0.62396),(0.00141,0.00700,0.00141,0.57410),(0.00191,0.00914,0.00191,0.52037),(0.00262,0.01192,0.00262,0.46138),(0.00369,0.01568,0.00369,0.39455),(0.00550,0.02122,0.00550,0.31394),(0.01079,0.03284,0.01079,0.18476)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00000,0.00306,0.00000,0.00610),(0.00003,0.00922,0.00003,0.01827),(0.00008,0.01548,0.00008,0.03046),(0.00018,0.02185,0.00018,0.04267),(0.00031,0.02834,0.00031,0.05488),(0.00049,0.03495,0.00049,0.06707),(0.00074,0.04169,0.00074,0.07924),(0.00107,0.04859,0.00107,0.09135),(0.00150,0.05566,0.00150,0.10336),(0.00206,0.06292,0.00206,0.11520),(0.00281,0.07038,0.00281,0.12677),(0.00382,0.07809,0.00382,0.13791),(0.00524,0.08607,0.00524,0.14830),(0.00737,0.09434,0.00737,0.15731),(0.01100,0.10285,0.01100,0.16325),(0.02157,0.11073,0.02157,0.15579)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.98953,0.00000,0.00002,0.00000),(0.96809,0.00003,0.00020,0.00003),(0.94577,0.00010,0.00058,0.00010),(0.92245,0.00020,0.00118,0.00020),(0.89799,0.00035,0.00205,0.00035),(0.87224,0.00056,0.00322,0.00056),(0.84499,0.00084,0.00474,0.00084),(0.81596,0.00120,0.00670,0.00120),(0.78481,0.00169,0.00918,0.00169),(0.75105,0.00232,0.01231,0.00232),(0.71398,0.00316,0.01629,0.00316),(0.67253,0.00430,0.02138,0.00430),(0.62493,0.00590,0.02807,0.00590),(0.56783,0.00829,0.03724,0.00829),(0.49314,0.01238,0.05098,0.01238),(0.35253,0.02427,0.08066,0.02427)} {(0.98953,0.00000,0.00002,0.00000),(0.96809,0.00003,0.00020,0.00003),(0.94577,0.00010,0.00058,0.00010),(0.92245,0.00020,0.00118,0.00020),(0.89799,0.00035,0.00205,0.00035),(0.87224,0.00056,0.00322,0.00056),(0.84499,0.00084,0.00474,0.00084),(0.81596,0.00120,0.00670,0.00120),(0.78481,0.00169,0.00918,0.00169),(0.75105,0.00232,0.01231,0.00232),(0.71398,0.00316,0.01629,0.00316),(0.67253,0.00430,0.02138,0.00430),(0.62493,0.00590,0.02807,0.00590),(0.56783,0.00829,0.03724,0.00829),(0.49314,0.01238,0.05098,0.01238),(0.35253,0.02427,0.08066,0.02427)} {(0.00000,0.00000,0.98341,0.00000),(0.00002,0.00000,0.94969,0.00000),(0.00006,0.00001,0.91492,0.00001),(0.00013,0.00002,0.87899,0.00002),(0.00023,0.00004,0.84176,0.00004),(0.00036,0.00006,0.80306,0.00006),(0.00053,0.00009,0.76268,0.00009),(0.00074,0.00013,0.72035,0.00013),(0.00102,0.00019,0.67571,0.00019),(0.00137,0.00026,0.62830,0.00026),(0.00181,0.00035,0.57744,0.00035),(0.00238,0.00048,0.52214,0.00048),(0.00312,0.00066,0.46081,0.00066),(0.00414,0.00092,0.39049,0.00092),(0.00566,0.00138,0.30439,0.00138),(0.00896,0.00270,0.16354,0.00270)} ] - TEST alpha(ncats) = 1.50(16) + TEST alpha(ncats) = 1.50(16), mode = MEAN + +0.085360 0.188440 0.278832 0.366434 0.454812 0.546200 0.642513 0.745773 0.858422 0.983717 1.126370 1.293782 1.498817 1.767316 2.165541 2.997672 +[4] P-matrix for branch length 0.100000 ++0.9930 +0.0033 +0.0021 +0.0017 ++0.0025 +0.9926 +0.0008 +0.0041 ++0.0062 +0.0033 +0.9889 +0.0017 ++0.0025 +0.0082 +0.0008 +0.9885 + ++0.9846 +0.0073 +0.0045 +0.0036 ++0.0054 +0.9838 +0.0018 +0.0090 ++0.0135 +0.0073 +0.9756 +0.0036 ++0.0054 +0.0179 +0.0018 +0.9748 + ++0.9774 +0.0107 +0.0066 +0.0053 ++0.0080 +0.9762 +0.0027 +0.0132 ++0.0198 +0.0107 +0.9642 +0.0053 ++0.0080 +0.0263 +0.0027 +0.9630 + ++0.9704 +0.0140 +0.0086 +0.0070 ++0.0105 +0.9689 +0.0035 +0.0171 ++0.0258 +0.0140 +0.9533 +0.0070 ++0.0105 +0.0343 +0.0035 +0.9518 + ++0.9635 +0.0173 +0.0106 +0.0086 ++0.0130 +0.9617 +0.0043 +0.0211 ++0.0317 +0.0173 +0.9424 +0.0086 ++0.0130 +0.0421 +0.0043 +0.9406 + ++0.9564 +0.0207 +0.0126 +0.0103 ++0.0155 +0.9543 +0.0052 +0.0251 ++0.0378 +0.0207 +0.9312 +0.0103 ++0.0155 +0.0501 +0.0052 +0.9292 + ++0.9490 +0.0242 +0.0147 +0.0121 ++0.0181 +0.9466 +0.0060 +0.0292 ++0.0440 +0.0242 +0.9197 +0.0121 ++0.0181 +0.0584 +0.0060 +0.9174 + ++0.9412 +0.0279 +0.0169 +0.0140 ++0.0210 +0.9385 +0.0070 +0.0335 ++0.0506 +0.0279 +0.9075 +0.0140 ++0.0210 +0.0671 +0.0070 +0.9050 + ++0.9328 +0.0320 +0.0192 +0.0160 ++0.0240 +0.9299 +0.0080 +0.0382 ++0.0576 +0.0320 +0.8944 +0.0160 ++0.0240 +0.0763 +0.0080 +0.8917 + ++0.9236 +0.0364 +0.0218 +0.0182 ++0.0273 +0.9204 +0.0091 +0.0432 ++0.0653 +0.0364 +0.8801 +0.0182 ++0.0273 +0.0863 +0.0091 +0.8772 + ++0.9133 +0.0414 +0.0246 +0.0207 ++0.0311 +0.9098 +0.0104 +0.0487 ++0.0738 +0.0414 +0.8641 +0.0207 ++0.0311 +0.0975 +0.0104 +0.8611 + ++0.9014 +0.0472 +0.0278 +0.0236 ++0.0354 +0.8978 +0.0118 +0.0550 ++0.0834 +0.0472 +0.8457 +0.0236 ++0.0354 +0.1101 +0.0118 +0.8427 + ++0.8871 +0.0542 +0.0316 +0.0271 ++0.0406 +0.8834 +0.0135 +0.0625 ++0.0948 +0.0542 +0.8239 +0.0271 ++0.0406 +0.1249 +0.0135 +0.8209 + ++0.8690 +0.0631 +0.0364 +0.0315 ++0.0473 +0.8652 +0.0158 +0.0717 ++0.1091 +0.0631 +0.7963 +0.0315 ++0.0473 +0.1434 +0.0158 +0.7935 + ++0.8433 +0.0758 +0.0430 +0.0379 ++0.0569 +0.8397 +0.0190 +0.0845 ++0.1289 +0.0758 +0.7573 +0.0379 ++0.0569 +0.1690 +0.0190 +0.7552 + ++0.7933 +0.1010 +0.0552 +0.0505 ++0.0758 +0.7911 +0.0253 +0.1079 ++0.1656 +0.1010 +0.6829 +0.0505 ++0.0758 +0.2158 +0.0253 +0.6832 + + +[4] P-matrix for branch length 0.200000 ++0.9861 +0.0066 +0.0041 +0.0033 ++0.0049 +0.9853 +0.0016 +0.0081 ++0.0122 +0.0066 +0.9779 +0.0033 ++0.0049 +0.0163 +0.0016 +0.9771 + ++0.9696 +0.0144 +0.0088 +0.0072 ++0.0108 +0.9680 +0.0036 +0.0176 ++0.0265 +0.0144 +0.9520 +0.0072 ++0.0108 +0.0352 +0.0036 +0.9504 + ++0.9555 +0.0211 +0.0128 +0.0105 ++0.0158 +0.9534 +0.0053 +0.0256 ++0.0385 +0.0211 +0.9299 +0.0105 ++0.0158 +0.0511 +0.0053 +0.9278 + ++0.9422 +0.0275 +0.0166 +0.0137 ++0.0206 +0.9395 +0.0069 +0.0330 ++0.0498 +0.0275 +0.9090 +0.0137 ++0.0206 +0.0660 +0.0069 +0.9065 + ++0.9290 +0.0338 +0.0203 +0.0169 ++0.0254 +0.9260 +0.0085 +0.0402 ++0.0608 +0.0338 +0.8885 +0.0169 ++0.0254 +0.0804 +0.0085 +0.8857 + ++0.9157 +0.0403 +0.0239 +0.0201 ++0.0302 +0.9123 +0.0101 +0.0474 ++0.0718 +0.0403 +0.8678 +0.0201 ++0.0302 +0.0948 +0.0101 +0.8649 + ++0.9020 +0.0469 +0.0276 +0.0235 ++0.0352 +0.8984 +0.0117 +0.0547 ++0.0829 +0.0469 +0.8467 +0.0235 ++0.0352 +0.1094 +0.0117 +0.8437 + ++0.8876 +0.0539 +0.0315 +0.0270 ++0.0404 +0.8839 +0.0135 +0.0622 ++0.0944 +0.0539 +0.8247 +0.0270 ++0.0404 +0.1244 +0.0135 +0.8217 + ++0.8724 +0.0614 +0.0355 +0.0307 ++0.0461 +0.8686 +0.0154 +0.0700 ++0.1065 +0.0614 +0.8014 +0.0307 ++0.0461 +0.1400 +0.0154 +0.7986 + ++0.8559 +0.0696 +0.0398 +0.0348 ++0.0522 +0.8522 +0.0174 +0.0783 ++0.1193 +0.0696 +0.7764 +0.0348 ++0.0522 +0.1565 +0.0174 +0.7739 + ++0.8378 +0.0786 +0.0444 +0.0393 ++0.0589 +0.8343 +0.0196 +0.0871 ++0.1331 +0.0786 +0.7491 +0.0393 ++0.0589 +0.1743 +0.0196 +0.7471 + ++0.8173 +0.0889 +0.0494 +0.0444 ++0.0666 +0.8142 +0.0222 +0.0969 ++0.1483 +0.0889 +0.7184 +0.0444 ++0.0666 +0.1938 +0.0222 +0.7173 + ++0.7933 +0.1010 +0.0552 +0.0505 ++0.0758 +0.7911 +0.0253 +0.1079 ++0.1656 +0.1010 +0.6829 +0.0505 ++0.0758 +0.2158 +0.0253 +0.6832 + ++0.7637 +0.1162 +0.0621 +0.0581 ++0.0871 +0.7629 +0.0290 +0.1209 ++0.1862 +0.1162 +0.6395 +0.0581 ++0.0871 +0.2419 +0.0290 +0.6419 + ++0.7231 +0.1373 +0.0709 +0.0687 ++0.1030 +0.7251 +0.0343 +0.1376 ++0.2128 +0.1373 +0.5812 +0.0687 ++0.1030 +0.2753 +0.0343 +0.5874 + ++0.6499 +0.1765 +0.0853 +0.0883 ++0.1324 +0.6593 +0.0441 +0.1642 ++0.2559 +0.1765 +0.4793 +0.0883 ++0.1324 +0.3284 +0.0441 +0.4951 + + +[4] P-matrix for branch length 1.000000 ++0.9332 +0.0318 +0.0191 +0.0159 ++0.0239 +0.9302 +0.0080 +0.0380 ++0.0573 +0.0318 +0.8949 +0.0159 ++0.0239 +0.0759 +0.0080 +0.8923 + ++0.8613 +0.0669 +0.0384 +0.0334 ++0.0502 +0.8575 +0.0167 +0.0756 ++0.1151 +0.0669 +0.7846 +0.0334 ++0.0502 +0.1512 +0.0167 +0.7820 + ++0.8054 +0.0949 +0.0523 +0.0474 ++0.0711 +0.8027 +0.0237 +0.1024 ++0.1569 +0.0949 +0.7008 +0.0474 ++0.0711 +0.2048 +0.0237 +0.7003 + ++0.7568 +0.1197 +0.0636 +0.0599 ++0.0898 +0.7564 +0.0299 +0.1239 ++0.1908 +0.1197 +0.6296 +0.0599 ++0.0898 +0.2477 +0.0299 +0.6325 + ++0.7127 +0.1428 +0.0731 +0.0714 ++0.1071 +0.7155 +0.0357 +0.1417 ++0.2193 +0.1428 +0.5665 +0.0714 ++0.1071 +0.2834 +0.0357 +0.5738 + ++0.6718 +0.1646 +0.0812 +0.0823 ++0.1235 +0.6786 +0.0412 +0.1568 ++0.2437 +0.1646 +0.5093 +0.0823 ++0.1235 +0.3135 +0.0412 +0.5219 + ++0.6333 +0.1856 +0.0882 +0.0928 ++0.1392 +0.6448 +0.0464 +0.1696 ++0.2647 +0.1856 +0.4568 +0.0928 ++0.1392 +0.3391 +0.0464 +0.4752 + ++0.5966 +0.2061 +0.0942 +0.1030 ++0.1546 +0.6135 +0.0515 +0.1804 ++0.2827 +0.2061 +0.4082 +0.1030 ++0.1546 +0.3608 +0.0515 +0.4331 + ++0.5614 +0.2262 +0.0993 +0.1131 ++0.1696 +0.5843 +0.0565 +0.1895 ++0.2979 +0.2262 +0.3629 +0.1131 ++0.1696 +0.3790 +0.0565 +0.3948 + ++0.5274 +0.2461 +0.1035 +0.1230 ++0.1846 +0.5569 +0.0615 +0.1970 ++0.3104 +0.2461 +0.3204 +0.1230 ++0.1846 +0.3940 +0.0615 +0.3599 + ++0.4942 +0.2660 +0.1068 +0.1330 ++0.1995 +0.5311 +0.0665 +0.2029 ++0.3204 +0.2660 +0.2806 +0.1330 ++0.1995 +0.4059 +0.0665 +0.3281 + ++0.4616 +0.2861 +0.1092 +0.1430 ++0.2146 +0.5066 +0.0715 +0.2073 ++0.3276 +0.2861 +0.2432 +0.1430 ++0.2146 +0.4146 +0.0715 +0.2993 + ++0.4294 +0.3067 +0.1106 +0.1533 ++0.2300 +0.4832 +0.0767 +0.2101 ++0.3319 +0.3067 +0.2081 +0.1533 ++0.2300 +0.4202 +0.0767 +0.2731 + ++0.3970 +0.3281 +0.1109 +0.1640 ++0.2461 +0.4607 +0.0820 +0.2112 ++0.3327 +0.3281 +0.1751 +0.1640 ++0.2461 +0.4224 +0.0820 +0.2496 + ++0.3636 +0.3511 +0.1097 +0.1756 ++0.2634 +0.4387 +0.0878 +0.2101 ++0.3290 +0.3511 +0.1443 +0.1756 ++0.2634 +0.4203 +0.0878 +0.2286 + ++0.3269 +0.3782 +0.1058 +0.1891 ++0.2837 +0.4158 +0.0946 +0.2059 ++0.3174 +0.3782 +0.1153 +0.1891 ++0.2837 +0.4119 +0.0946 +0.2099 + + +[4] P-matrix for branch length 1.000000 ++0.9332 +0.0318 +0.0191 +0.0159 ++0.0239 +0.9302 +0.0080 +0.0380 ++0.0573 +0.0318 +0.8949 +0.0159 ++0.0239 +0.0759 +0.0080 +0.8923 + ++0.8613 +0.0669 +0.0384 +0.0334 ++0.0502 +0.8575 +0.0167 +0.0756 ++0.1151 +0.0669 +0.7846 +0.0334 ++0.0502 +0.1512 +0.0167 +0.7820 + ++0.8054 +0.0949 +0.0523 +0.0474 ++0.0711 +0.8027 +0.0237 +0.1024 ++0.1569 +0.0949 +0.7008 +0.0474 ++0.0711 +0.2048 +0.0237 +0.7003 + ++0.7568 +0.1197 +0.0636 +0.0599 ++0.0898 +0.7564 +0.0299 +0.1239 ++0.1908 +0.1197 +0.6296 +0.0599 ++0.0898 +0.2477 +0.0299 +0.6325 + ++0.7127 +0.1428 +0.0731 +0.0714 ++0.1071 +0.7155 +0.0357 +0.1417 ++0.2193 +0.1428 +0.5665 +0.0714 ++0.1071 +0.2834 +0.0357 +0.5738 + ++0.6718 +0.1646 +0.0812 +0.0823 ++0.1235 +0.6786 +0.0412 +0.1568 ++0.2437 +0.1646 +0.5093 +0.0823 ++0.1235 +0.3135 +0.0412 +0.5219 + ++0.6333 +0.1856 +0.0882 +0.0928 ++0.1392 +0.6448 +0.0464 +0.1696 ++0.2647 +0.1856 +0.4568 +0.0928 ++0.1392 +0.3391 +0.0464 +0.4752 + ++0.5966 +0.2061 +0.0942 +0.1030 ++0.1546 +0.6135 +0.0515 +0.1804 ++0.2827 +0.2061 +0.4082 +0.1030 ++0.1546 +0.3608 +0.0515 +0.4331 + ++0.5614 +0.2262 +0.0993 +0.1131 ++0.1696 +0.5843 +0.0565 +0.1895 ++0.2979 +0.2262 +0.3629 +0.1131 ++0.1696 +0.3790 +0.0565 +0.3948 + ++0.5274 +0.2461 +0.1035 +0.1230 ++0.1846 +0.5569 +0.0615 +0.1970 ++0.3104 +0.2461 +0.3204 +0.1230 ++0.1846 +0.3940 +0.0615 +0.3599 + ++0.4942 +0.2660 +0.1068 +0.1330 ++0.1995 +0.5311 +0.0665 +0.2029 ++0.3204 +0.2660 +0.2806 +0.1330 ++0.1995 +0.4059 +0.0665 +0.3281 + ++0.4616 +0.2861 +0.1092 +0.1430 ++0.2146 +0.5066 +0.0715 +0.2073 ++0.3276 +0.2861 +0.2432 +0.1430 ++0.2146 +0.4146 +0.0715 +0.2993 + ++0.4294 +0.3067 +0.1106 +0.1533 ++0.2300 +0.4832 +0.0767 +0.2101 ++0.3319 +0.3067 +0.2081 +0.1533 ++0.2300 +0.4202 +0.0767 +0.2731 + ++0.3970 +0.3281 +0.1109 +0.1640 ++0.2461 +0.4607 +0.0820 +0.2112 ++0.3327 +0.3281 +0.1751 +0.1640 ++0.2461 +0.4224 +0.0820 +0.2496 + ++0.3636 +0.3511 +0.1097 +0.1756 ++0.2634 +0.4387 +0.0878 +0.2101 ++0.3290 +0.3511 +0.1443 +0.1756 ++0.2634 +0.4203 +0.0878 +0.2286 + ++0.3269 +0.3782 +0.1058 +0.1891 ++0.2837 +0.4158 +0.0946 +0.2059 ++0.3174 +0.3782 +0.1153 +0.1891 ++0.2837 +0.4119 +0.0946 +0.2099 + + +[4] CLV 5: [ {(0.00651,0.01288,0.00010,0.01599),(0.01404,0.02747,0.00048,0.03383),(0.02037,0.03944,0.00103,0.04823),(0.02626,0.05036,0.00175,0.06118),(0.03198,0.06072,0.00263,0.07329),(0.03767,0.07080,0.00370,0.08489),(0.04342,0.08076,0.00499,0.09616),(0.04932,0.09073,0.00655,0.10725),(0.05546,0.10082,0.00843,0.11827),(0.06195,0.11115,0.01071,0.12931),(0.06892,0.12187,0.01354,0.14049),(0.07657,0.13316,0.01712,0.15193),(0.08523,0.14530,0.02182,0.16380),(0.09548,0.15874,0.02838,0.17635),(0.10872,0.17446,0.03865,0.19004),(0.13029,0.19553,0.06075,0.20606)} {(0.97231,0.00002,0.00015,0.00002),(0.94016,0.00012,0.00070,0.00012),(0.91305,0.00025,0.00148,0.00025),(0.88773,0.00042,0.00248,0.00042),(0.86308,0.00064,0.00370,0.00064),(0.83850,0.00091,0.00515,0.00091),(0.81357,0.00124,0.00688,0.00124),(0.78789,0.00164,0.00892,0.00164),(0.76106,0.00212,0.01134,0.00212),(0.73260,0.00272,0.01422,0.00272),(0.70188,0.00347,0.01770,0.00347),(0.66796,0.00444,0.02198,0.00444),(0.62933,0.00574,0.02742,0.00574),(0.58317,0.00759,0.03466,0.00759),(0.52287,0.01061,0.04529,0.01061),(0.42242,0.01752,0.06549,0.01752)} {(0.00648,0.00486,0.00008,0.00008),(0.01393,0.01043,0.00038,0.00038),(0.02014,0.01507,0.00081,0.00081),(0.02588,0.01936,0.00137,0.00136),(0.03141,0.02348,0.00206,0.00204),(0.03686,0.02754,0.00289,0.00286),(0.04232,0.03161,0.00389,0.00385),(0.04787,0.03575,0.00509,0.00503),(0.05358,0.04001,0.00654,0.00645),(0.05953,0.04445,0.00829,0.00817),(0.06583,0.04917,0.01046,0.01027),(0.07262,0.05426,0.01318,0.01292),(0.08013,0.05993,0.01672,0.01635),(0.08873,0.06648,0.02163,0.02108),(0.09929,0.07467,0.02922,0.02835),(0.11472,0.08728,0.04517,0.04347)} {(0.00004,0.97078,0.00004,0.00027),(0.00021,0.93709,0.00021,0.00124),(0.00044,0.90890,0.00044,0.00261),(0.00075,0.88273,0.00075,0.00435),(0.00114,0.85742,0.00114,0.00647),(0.00162,0.83235,0.00162,0.00899),(0.00220,0.80708,0.00220,0.01197),(0.00291,0.78123,0.00291,0.01548),(0.00377,0.75442,0.00377,0.01961),(0.00484,0.72621,0.00484,0.02450),(0.00617,0.69601,0.00617,0.03038),(0.00790,0.66299,0.00790,0.03756),(0.01020,0.62581,0.01020,0.04658),(0.01350,0.58197,0.01350,0.05850),(0.01885,0.52571,0.01885,0.07577),(0.03115,0.43467,0.03115,0.10784)} {(0.00324,0.00004,0.00004,0.00482),(0.00697,0.00019,0.00019,0.01024),(0.01007,0.00040,0.00041,0.01467),(0.01294,0.00068,0.00068,0.01868),(0.01571,0.00102,0.00103,0.02246),(0.01843,0.00143,0.00144,0.02611),(0.02116,0.00193,0.00195,0.02969),(0.02393,0.00252,0.00255,0.03323),(0.02679,0.00322,0.00327,0.03678),(0.02977,0.00408,0.00415,0.04037),(0.03292,0.00514,0.00523,0.04403),(0.03631,0.00646,0.00659,0.04781),(0.04006,0.00818,0.00836,0.05175),(0.04437,0.01054,0.01082,0.05594),(0.04964,0.01417,0.01461,0.06050),(0.05736,0.02174,0.02258,0.06554)} {(0.00002,0.00802,0.00002,0.01591),(0.00010,0.01703,0.00010,0.03345),(0.00022,0.02437,0.00022,0.04743),(0.00038,0.03100,0.00038,0.05982),(0.00057,0.03724,0.00057,0.07125),(0.00081,0.04326,0.00081,0.08202),(0.00110,0.04915,0.00110,0.09231),(0.00145,0.05498,0.00145,0.10222),(0.00189,0.06081,0.00189,0.11182),(0.00242,0.06670,0.00242,0.12115),(0.00309,0.07271,0.00309,0.13022),(0.00395,0.07890,0.00395,0.13902),(0.00510,0.08537,0.00510,0.14745),(0.00675,0.09226,0.00675,0.15527),(0.00943,0.09979,0.00943,0.16169),(0.01558,0.10826,0.01558,0.16259)} {(0.00002,0.00000,0.95630,0.00000),(0.00008,0.00001,0.90623,0.00001),(0.00016,0.00003,0.86464,0.00003),(0.00028,0.00005,0.82627,0.00005),(0.00041,0.00007,0.78942,0.00007),(0.00057,0.00010,0.75316,0.00010),(0.00076,0.00014,0.71688,0.00014),(0.00099,0.00018,0.68008,0.00018),(0.00126,0.00024,0.64224,0.00024),(0.00158,0.00030,0.60282,0.00030),(0.00197,0.00039,0.56112,0.00039),(0.00244,0.00049,0.51615,0.00049),(0.00305,0.00064,0.46638,0.00064),(0.00385,0.00084,0.40902,0.00084),(0.00503,0.00118,0.33782,0.00118),(0.00728,0.00195,0.22976,0.00195)} {(0.00004,0.97078,0.00004,0.00027),(0.00021,0.93709,0.00021,0.00124),(0.00044,0.90890,0.00044,0.00261),(0.00075,0.88273,0.00075,0.00435),(0.00114,0.85742,0.00114,0.00647),(0.00162,0.83235,0.00162,0.00899),(0.00220,0.80708,0.00220,0.01197),(0.00291,0.78123,0.00291,0.01548),(0.00377,0.75442,0.00377,0.01961),(0.00484,0.72621,0.00484,0.02450),(0.00617,0.69601,0.00617,0.03038),(0.00790,0.66299,0.00790,0.03756),(0.01020,0.62581,0.01020,0.04658),(0.01350,0.58197,0.01350,0.05850),(0.01885,0.52571,0.01885,0.07577),(0.03115,0.43467,0.03115,0.10784)} {(0.00001,0.00007,0.00001,0.95480),(0.00005,0.00031,0.00005,0.90333),(0.00011,0.00065,0.00011,0.86082),(0.00019,0.00109,0.00019,0.82182),(0.00029,0.00162,0.00029,0.78455),(0.00041,0.00225,0.00041,0.74807),(0.00055,0.00299,0.00055,0.71177),(0.00073,0.00387,0.00073,0.67514),(0.00094,0.00490,0.00094,0.63770),(0.00121,0.00613,0.00121,0.59893),(0.00154,0.00759,0.00154,0.55819),(0.00197,0.00939,0.00197,0.51458),(0.00255,0.01165,0.00255,0.46671),(0.00338,0.01463,0.00338,0.41208),(0.00471,0.01894,0.00471,0.34508),(0.00779,0.02696,0.00779,0.24512)} {(0.97231,0.00002,0.00015,0.00002),(0.94016,0.00012,0.00070,0.00012),(0.91305,0.00025,0.00148,0.00025),(0.88773,0.00042,0.00248,0.00042),(0.86308,0.00064,0.00370,0.00064),(0.83850,0.00091,0.00515,0.00091),(0.81357,0.00124,0.00688,0.00124),(0.78789,0.00164,0.00892,0.00164),(0.76106,0.00212,0.01134,0.00212),(0.73260,0.00272,0.01422,0.00272),(0.70188,0.00347,0.01770,0.00347),(0.66796,0.00444,0.02198,0.00444),(0.62933,0.00574,0.02742,0.00574),(0.58317,0.00759,0.03466,0.00759),(0.52287,0.01061,0.04529,0.01061),(0.42242,0.01752,0.06549,0.01752)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} 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{(0.00002,0.00000,0.95630,0.00000),(0.00008,0.00001,0.90623,0.00001),(0.00016,0.00003,0.86464,0.00003),(0.00028,0.00005,0.82627,0.00005),(0.00041,0.00007,0.78942,0.00007),(0.00057,0.00010,0.75316,0.00010),(0.00076,0.00014,0.71688,0.00014),(0.00099,0.00018,0.68008,0.00018),(0.00126,0.00024,0.64224,0.00024),(0.00158,0.00030,0.60282,0.00030),(0.00197,0.00039,0.56112,0.00039),(0.00244,0.00049,0.51615,0.00049),(0.00305,0.00064,0.46638,0.00064),(0.00385,0.00084,0.40902,0.00084),(0.00503,0.00118,0.33782,0.00118),(0.00728,0.00195,0.22976,0.00195)} ] + + + TEST alpha(ncats) = 1.50(16), mode = MEDIAN 0.080674 0.185159 0.274520 0.360938 0.448071 0.538157 0.633099 0.734899 0.845979 0.969573 1.110370 1.275764 1.478706 1.745588 2.146831 3.171673 [4] P-matrix for branch length 0.100000 @@ -4956,7 +9912,343 @@ [4] CLV 7: [ {(0.00004,0.97235,0.00004,0.00024),(0.00020,0.93813,0.00020,0.00120),(0.00043,0.91021,0.00043,0.00254),(0.00073,0.88434,0.00073,0.00423),(0.00111,0.85931,0.00111,0.00630),(0.00158,0.83451,0.00158,0.00876),(0.00214,0.80950,0.00214,0.01167),(0.00283,0.78389,0.00283,0.01509),(0.00367,0.75731,0.00367,0.01914),(0.00471,0.72931,0.00471,0.02394),(0.00602,0.69930,0.00602,0.02971),(0.00770,0.66642,0.00770,0.03677),(0.00997,0.62930,0.00997,0.04569),(0.01322,0.58533,0.01322,0.05754),(0.01859,0.52815,0.01859,0.07497),(0.03383,0.41924,0.03383,0.11368)} {(0.00001,0.00000,0.95865,0.00000),(0.00008,0.00001,0.90778,0.00001),(0.00016,0.00003,0.86657,0.00003),(0.00027,0.00005,0.82863,0.00005),(0.00040,0.00007,0.79217,0.00007),(0.00056,0.00010,0.75628,0.00010),(0.00074,0.00013,0.72035,0.00013),(0.00097,0.00018,0.68386,0.00018),(0.00123,0.00023,0.64631,0.00023),(0.00154,0.00029,0.60714,0.00029),(0.00192,0.00038,0.56564,0.00038),(0.00239,0.00048,0.52080,0.00048),(0.00299,0.00062,0.47102,0.00062),(0.00379,0.00083,0.41335,0.00083),(0.00498,0.00116,0.34083,0.00116),(0.00769,0.00211,0.21252,0.00211)} {(0.00307,0.00004,0.00004,0.00456),(0.00685,0.00018,0.00018,0.01008),(0.00993,0.00039,0.00039,0.01446),(0.01277,0.00066,0.00066,0.01843),(0.01550,0.00099,0.00100,0.02218),(0.01819,0.00139,0.00141,0.02580),(0.02090,0.00187,0.00189,0.02935),(0.02365,0.00245,0.00248,0.03287),(0.02648,0.00314,0.00319,0.03641),(0.02944,0.00398,0.00404,0.03998),(0.03257,0.00501,0.00510,0.04364),(0.03596,0.00631,0.00644,0.04743),(0.03971,0.00800,0.00818,0.05139),(0.04404,0.01034,0.01061,0.05564),(0.04942,0.01400,0.01443,0.06032),(0.05853,0.02326,0.02420,0.06606)} {(0.00004,0.97235,0.00004,0.00024),(0.00020,0.93813,0.00020,0.00120),(0.00043,0.91021,0.00043,0.00254),(0.00073,0.88434,0.00073,0.00423),(0.00111,0.85931,0.00111,0.00630),(0.00158,0.83451,0.00158,0.00876),(0.00214,0.80950,0.00214,0.01167),(0.00283,0.78389,0.00283,0.01509),(0.00367,0.75731,0.00367,0.01914),(0.00471,0.72931,0.00471,0.02394),(0.00602,0.69930,0.00602,0.02971),(0.00770,0.66642,0.00770,0.03677),(0.00997,0.62930,0.00997,0.04569),(0.01322,0.58533,0.01322,0.05754),(0.01859,0.52815,0.01859,0.07497),(0.03383,0.41924,0.03383,0.11368)} {(0.00001,0.00006,0.00001,0.95722),(0.00005,0.00030,0.00005,0.90492),(0.00011,0.00063,0.00011,0.86279),(0.00018,0.00106,0.00018,0.82421),(0.00028,0.00157,0.00028,0.78732),(0.00039,0.00219,0.00039,0.75120),(0.00054,0.00292,0.00054,0.71523),(0.00071,0.00377,0.00071,0.67889),(0.00092,0.00478,0.00092,0.64171),(0.00118,0.00598,0.00118,0.60317),(0.00150,0.00743,0.00150,0.56259),(0.00193,0.00919,0.00193,0.51907),(0.00249,0.01142,0.00249,0.47115),(0.00331,0.01439,0.00331,0.41619),(0.00465,0.01874,0.00465,0.34790),(0.00846,0.02842,0.00846,0.22935)} {(0.00001,0.00006,0.00001,0.95722),(0.00005,0.00030,0.00005,0.90492),(0.00011,0.00063,0.00011,0.86279),(0.00018,0.00106,0.00018,0.82421),(0.00028,0.00157,0.00028,0.78732),(0.00039,0.00219,0.00039,0.75120),(0.00054,0.00292,0.00054,0.71523),(0.00071,0.00377,0.00071,0.67889),(0.00092,0.00478,0.00092,0.64171),(0.00118,0.00598,0.00118,0.60317),(0.00150,0.00743,0.00150,0.56259),(0.00193,0.00919,0.00193,0.51907),(0.00249,0.01142,0.00249,0.47115),(0.00331,0.01439,0.00331,0.41619),(0.00465,0.01874,0.00465,0.34790),(0.00846,0.02842,0.00846,0.22935)} {(0.00001,0.00000,0.95865,0.00000),(0.00008,0.00001,0.90778,0.00001),(0.00016,0.00003,0.86657,0.00003),(0.00027,0.00005,0.82863,0.00005),(0.00040,0.00007,0.79217,0.00007),(0.00056,0.00010,0.75628,0.00010),(0.00074,0.00013,0.72035,0.00013),(0.00097,0.00018,0.68386,0.00018),(0.00123,0.00023,0.64631,0.00023),(0.00154,0.00029,0.60714,0.00029),(0.00192,0.00038,0.56564,0.00038),(0.00239,0.00048,0.52080,0.00048),(0.00299,0.00062,0.47102,0.00062),(0.00379,0.00083,0.41335,0.00083),(0.00498,0.00116,0.34083,0.00116),(0.00769,0.00211,0.21252,0.00211)} {(0.00004,0.97235,0.00004,0.00024),(0.00020,0.93813,0.00020,0.00120),(0.00043,0.91021,0.00043,0.00254),(0.00073,0.88434,0.00073,0.00423),(0.00111,0.85931,0.00111,0.00630),(0.00158,0.83451,0.00158,0.00876),(0.00214,0.80950,0.00214,0.01167),(0.00283,0.78389,0.00283,0.01509),(0.00367,0.75731,0.00367,0.01914),(0.00471,0.72931,0.00471,0.02394),(0.00602,0.69930,0.00602,0.02971),(0.00770,0.66642,0.00770,0.03677),(0.00997,0.62930,0.00997,0.04569),(0.01322,0.58533,0.01322,0.05754),(0.01859,0.52815,0.01859,0.07497),(0.03383,0.41924,0.03383,0.11368)} {(0.00614,0.00460,0.00007,0.00007),(0.01370,0.01026,0.00037,0.00037),(0.01985,0.01486,0.00079,0.00078),(0.02553,0.01910,0.00133,0.00132),(0.03100,0.02317,0.00200,0.00198),(0.03639,0.02719,0.00281,0.00279),(0.04180,0.03122,0.00379,0.00375),(0.04730,0.03532,0.00496,0.00490),(0.05296,0.03955,0.00637,0.00629),(0.05888,0.04397,0.00809,0.00797),(0.06515,0.04866,0.01020,0.01003),(0.07192,0.05374,0.01287,0.01262),(0.07943,0.05940,0.01637,0.01601),(0.08808,0.06598,0.02123,0.02069),(0.09885,0.07432,0.02886,0.02800),(0.11705,0.08932,0.04839,0.04651)} {(0.97381,0.00002,0.00013,0.00002),(0.94116,0.00011,0.00068,0.00011),(0.91432,0.00024,0.00144,0.00024),(0.88929,0.00041,0.00241,0.00041),(0.86493,0.00062,0.00360,0.00062),(0.84063,0.00089,0.00502,0.00089),(0.81596,0.00120,0.00670,0.00120),(0.79054,0.00159,0.00870,0.00159),(0.76396,0.00207,0.01106,0.00207),(0.73574,0.00265,0.01389,0.00265),(0.70524,0.00339,0.01730,0.00339),(0.67150,0.00433,0.02152,0.00433),(0.63298,0.00561,0.02688,0.00561),(0.58673,0.00744,0.03407,0.00744),(0.52550,0.01046,0.04480,0.01046),(0.40501,0.01903,0.06922,0.01903)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.97381,0.00002,0.00013,0.00002),(0.94116,0.00011,0.00068,0.00011),(0.91432,0.00024,0.00144,0.00024),(0.88929,0.00041,0.00241,0.00041),(0.86493,0.00062,0.00360,0.00062),(0.84063,0.00089,0.00502,0.00089),(0.81596,0.00120,0.00670,0.00120),(0.79054,0.00159,0.00870,0.00159),(0.76396,0.00207,0.01106,0.00207),(0.73574,0.00265,0.01389,0.00265),(0.70524,0.00339,0.01730,0.00339),(0.67150,0.00433,0.02152,0.00433),(0.63298,0.00561,0.02688,0.00561),(0.58673,0.00744,0.03407,0.00744),(0.52550,0.01046,0.04480,0.01046),(0.40501,0.01903,0.06922,0.01903)} {(0.00001,0.00006,0.00001,0.95722),(0.00005,0.00030,0.00005,0.90492),(0.00011,0.00063,0.00011,0.86279),(0.00018,0.00106,0.00018,0.82421),(0.00028,0.00157,0.00028,0.78732),(0.00039,0.00219,0.00039,0.75120),(0.00054,0.00292,0.00054,0.71523),(0.00071,0.00377,0.00071,0.67889),(0.00092,0.00478,0.00092,0.64171),(0.00118,0.00598,0.00118,0.60317),(0.00150,0.00743,0.00150,0.56259),(0.00193,0.00919,0.00193,0.51907),(0.00249,0.01142,0.00249,0.47115),(0.00331,0.01439,0.00331,0.41619),(0.00465,0.01874,0.00465,0.34790),(0.00846,0.02842,0.00846,0.22935)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00002,0.00760,0.00002,0.01507),(0.00010,0.01676,0.00010,0.03292),(0.00022,0.02403,0.00022,0.04679),(0.00037,0.03059,0.00037,0.05907),(0.00056,0.03678,0.00056,0.07042),(0.00079,0.04275,0.00079,0.08112),(0.00107,0.04859,0.00107,0.09135),(0.00141,0.05439,0.00141,0.10123),(0.00184,0.06019,0.00184,0.11082),(0.00236,0.06607,0.00236,0.12016),(0.00301,0.07207,0.00301,0.12928),(0.00385,0.07827,0.00385,0.13816),(0.00498,0.08479,0.00498,0.14673),(0.00661,0.09176,0.00661,0.15475),(0.00930,0.09950,0.00930,0.16150),(0.01691,0.10915,0.01691,0.16147)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.97381,0.00002,0.00013,0.00002),(0.94116,0.00011,0.00068,0.00011),(0.91432,0.00024,0.00144,0.00024),(0.88929,0.00041,0.00241,0.00041),(0.86493,0.00062,0.00360,0.00062),(0.84063,0.00089,0.00502,0.00089),(0.81596,0.00120,0.00670,0.00120),(0.79054,0.00159,0.00870,0.00159),(0.76396,0.00207,0.01106,0.00207),(0.73574,0.00265,0.01389,0.00265),(0.70524,0.00339,0.01730,0.00339),(0.67150,0.00433,0.02152,0.00433),(0.63298,0.00561,0.02688,0.00561),(0.58673,0.00744,0.03407,0.00744),(0.52550,0.01046,0.04480,0.01046),(0.40501,0.01903,0.06922,0.01903)} {(0.97381,0.00002,0.00013,0.00002),(0.94116,0.00011,0.00068,0.00011),(0.91432,0.00024,0.00144,0.00024),(0.88929,0.00041,0.00241,0.00041),(0.86493,0.00062,0.00360,0.00062),(0.84063,0.00089,0.00502,0.00089),(0.81596,0.00120,0.00670,0.00120),(0.79054,0.00159,0.00870,0.00159),(0.76396,0.00207,0.01106,0.00207),(0.73574,0.00265,0.01389,0.00265),(0.70524,0.00339,0.01730,0.00339),(0.67150,0.00433,0.02152,0.00433),(0.63298,0.00561,0.02688,0.00561),(0.58673,0.00744,0.03407,0.00744),(0.52550,0.01046,0.04480,0.01046),(0.40501,0.01903,0.06922,0.01903)} {(0.00001,0.00000,0.95865,0.00000),(0.00008,0.00001,0.90778,0.00001),(0.00016,0.00003,0.86657,0.00003),(0.00027,0.00005,0.82863,0.00005),(0.00040,0.00007,0.79217,0.00007),(0.00056,0.00010,0.75628,0.00010),(0.00074,0.00013,0.72035,0.00013),(0.00097,0.00018,0.68386,0.00018),(0.00123,0.00023,0.64631,0.00023),(0.00154,0.00029,0.60714,0.00029),(0.00192,0.00038,0.56564,0.00038),(0.00239,0.00048,0.52080,0.00048),(0.00299,0.00062,0.47102,0.00062),(0.00379,0.00083,0.41335,0.00083),(0.00498,0.00116,0.34083,0.00116),(0.00769,0.00211,0.21252,0.00211)} ] - TEST alpha(ncats) = 5.00(16) + TEST alpha(ncats) = 5.00(16), mode = MEAN + +0.346763 0.478958 0.567808 0.642444 0.710569 0.775729 0.840099 0.905353 0.973065 1.044995 1.123417 1.211675 1.315349 1.445356 1.629111 1.989309 +[5] P-matrix for branch length 0.100000 ++0.9720 +0.0132 +0.0081 +0.0066 ++0.0099 +0.9705 +0.0033 +0.0162 ++0.0244 +0.0132 +0.9557 +0.0066 ++0.0099 +0.0325 +0.0033 +0.9543 + ++0.9616 +0.0182 +0.0111 +0.0091 ++0.0136 +0.9597 +0.0045 +0.0221 ++0.0333 +0.0182 +0.9394 +0.0091 ++0.0136 +0.0443 +0.0045 +0.9376 + ++0.9548 +0.0215 +0.0131 +0.0107 ++0.0161 +0.9525 +0.0054 +0.0260 ++0.0392 +0.0215 +0.9286 +0.0107 ++0.0161 +0.0520 +0.0054 +0.9266 + ++0.9490 +0.0242 +0.0147 +0.0121 ++0.0181 +0.9466 +0.0060 +0.0292 ++0.0440 +0.0242 +0.9197 +0.0121 ++0.0181 +0.0584 +0.0060 +0.9174 + ++0.9439 +0.0267 +0.0161 +0.0133 ++0.0200 +0.9413 +0.0067 +0.0321 ++0.0484 +0.0267 +0.9116 +0.0133 ++0.0200 +0.0641 +0.0067 +0.9092 + ++0.9390 +0.0290 +0.0175 +0.0145 ++0.0218 +0.9362 +0.0073 +0.0348 ++0.0525 +0.0290 +0.9040 +0.0145 ++0.0218 +0.0695 +0.0073 +0.9014 + ++0.9342 +0.0313 +0.0188 +0.0157 ++0.0235 +0.9313 +0.0078 +0.0374 ++0.0565 +0.0313 +0.8965 +0.0157 ++0.0235 +0.0748 +0.0078 +0.8939 + ++0.9293 +0.0337 +0.0202 +0.0168 ++0.0252 +0.9263 +0.0084 +0.0400 ++0.0605 +0.0337 +0.8890 +0.0168 ++0.0252 +0.0801 +0.0084 +0.8862 + ++0.9244 +0.0361 +0.0215 +0.0180 ++0.0270 +0.9212 +0.0090 +0.0428 ++0.0646 +0.0361 +0.8813 +0.0180 ++0.0270 +0.0855 +0.0090 +0.8784 + ++0.9191 +0.0386 +0.0230 +0.0193 ++0.0289 +0.9158 +0.0096 +0.0456 ++0.0690 +0.0386 +0.8731 +0.0193 ++0.0289 +0.0912 +0.0096 +0.8703 + ++0.9135 +0.0413 +0.0245 +0.0207 ++0.0310 +0.9101 +0.0103 +0.0486 ++0.0736 +0.0413 +0.8644 +0.0207 ++0.0310 +0.0972 +0.0103 +0.8614 + ++0.9072 +0.0444 +0.0262 +0.0222 ++0.0333 +0.9036 +0.0111 +0.0520 ++0.0787 +0.0444 +0.8547 +0.0222 ++0.0333 +0.1039 +0.0111 +0.8517 + ++0.8999 +0.0480 +0.0282 +0.0240 ++0.0360 +0.8962 +0.0120 +0.0558 ++0.0847 +0.0480 +0.8434 +0.0240 ++0.0360 +0.1117 +0.0120 +0.8404 + ++0.8908 +0.0524 +0.0306 +0.0262 ++0.0393 +0.8871 +0.0131 +0.0606 ++0.0919 +0.0524 +0.8295 +0.0262 ++0.0393 +0.1211 +0.0131 +0.8265 + ++0.8783 +0.0585 +0.0340 +0.0293 ++0.0439 +0.8745 +0.0146 +0.0670 ++0.1019 +0.0585 +0.8104 +0.0293 ++0.0439 +0.1340 +0.0146 +0.8075 + ++0.8545 +0.0703 +0.0401 +0.0351 ++0.0527 +0.8508 +0.0176 +0.0790 ++0.1203 +0.0703 +0.7743 +0.0351 ++0.0527 +0.1579 +0.0176 +0.7718 + + +[5] P-matrix for branch length 0.200000 ++0.9452 +0.0260 +0.0158 +0.0130 ++0.0195 +0.9426 +0.0065 +0.0313 ++0.0473 +0.0260 +0.9136 +0.0130 ++0.0195 +0.0627 +0.0065 +0.9113 + ++0.9255 +0.0355 +0.0212 +0.0178 ++0.0266 +0.9223 +0.0089 +0.0421 ++0.0637 +0.0355 +0.8830 +0.0178 ++0.0266 +0.0843 +0.0089 +0.8802 + ++0.9126 +0.0418 +0.0248 +0.0209 ++0.0313 +0.9092 +0.0104 +0.0491 ++0.0743 +0.0418 +0.8630 +0.0209 ++0.0313 +0.0982 +0.0104 +0.8601 + ++0.9020 +0.0469 +0.0276 +0.0235 ++0.0352 +0.8984 +0.0117 +0.0547 ++0.0829 +0.0469 +0.8467 +0.0235 ++0.0352 +0.1094 +0.0117 +0.8437 + ++0.8925 +0.0516 +0.0302 +0.0258 ++0.0387 +0.8888 +0.0129 +0.0597 ++0.0906 +0.0516 +0.8321 +0.0258 ++0.0387 +0.1194 +0.0129 +0.8291 + ++0.8835 +0.0559 +0.0326 +0.0280 ++0.0419 +0.8798 +0.0140 +0.0643 ++0.0977 +0.0559 +0.8184 +0.0280 ++0.0419 +0.1286 +0.0140 +0.8154 + ++0.8748 +0.0602 +0.0349 +0.0301 ++0.0452 +0.8710 +0.0151 +0.0688 ++0.1046 +0.0602 +0.8051 +0.0301 ++0.0452 +0.1375 +0.0151 +0.8023 + ++0.8662 +0.0645 +0.0371 +0.0322 ++0.0484 +0.8624 +0.0161 +0.0732 ++0.1113 +0.0645 +0.7919 +0.0322 ++0.0484 +0.1463 +0.0161 +0.7892 + ++0.8573 +0.0689 +0.0394 +0.0344 ++0.0517 +0.8535 +0.0172 +0.0776 ++0.1182 +0.0689 +0.7785 +0.0344 ++0.0517 +0.1552 +0.0172 +0.7760 + ++0.8481 +0.0735 +0.0418 +0.0367 ++0.0551 +0.8444 +0.0184 +0.0822 ++0.1253 +0.0735 +0.7645 +0.0367 ++0.0551 +0.1643 +0.0184 +0.7622 + ++0.8382 +0.0784 +0.0443 +0.0392 ++0.0588 +0.8346 +0.0196 +0.0870 ++0.1328 +0.0784 +0.7496 +0.0392 ++0.0588 +0.1739 +0.0196 +0.7477 + ++0.8272 +0.0839 +0.0470 +0.0419 ++0.0629 +0.8239 +0.0210 +0.0922 ++0.1409 +0.0839 +0.7333 +0.0419 ++0.0629 +0.1844 +0.0210 +0.7317 + ++0.8147 +0.0902 +0.0501 +0.0451 ++0.0676 +0.8117 +0.0225 +0.0981 ++0.1502 +0.0902 +0.7146 +0.0451 ++0.0676 +0.1962 +0.0225 +0.7136 + ++0.7994 +0.0979 +0.0537 +0.0489 ++0.0734 +0.7970 +0.0245 +0.1051 ++0.1612 +0.0979 +0.6920 +0.0489 ++0.0734 +0.2103 +0.0245 +0.6918 + ++0.7787 +0.1085 +0.0586 +0.0542 ++0.0814 +0.7771 +0.0271 +0.1144 ++0.1759 +0.1085 +0.6614 +0.0542 ++0.0814 +0.2289 +0.0271 +0.6627 + ++0.7406 +0.1282 +0.0672 +0.0641 ++0.0961 +0.7412 +0.0320 +0.1306 ++0.2016 +0.1282 +0.6062 +0.0641 ++0.0961 +0.2612 +0.0320 +0.6106 + + +[5] P-matrix for branch length 1.000000 ++0.7672 +0.1143 +0.0612 +0.0572 ++0.0858 +0.7663 +0.0286 +0.1194 ++0.1837 +0.1143 +0.6448 +0.0572 ++0.0858 +0.2388 +0.0286 +0.6469 + ++0.7015 +0.1487 +0.0754 +0.0744 ++0.1116 +0.7053 +0.0372 +0.1460 ++0.2263 +0.1487 +0.5506 +0.0744 ++0.1116 +0.2919 +0.0372 +0.5593 + ++0.6628 +0.1695 +0.0829 +0.0848 ++0.1271 +0.6706 +0.0424 +0.1599 ++0.2488 +0.1695 +0.4969 +0.0848 ++0.1271 +0.3198 +0.0424 +0.5107 + ++0.6333 +0.1856 +0.0882 +0.0928 ++0.1392 +0.6448 +0.0464 +0.1696 ++0.2647 +0.1856 +0.4569 +0.0928 ++0.1392 +0.3391 +0.0464 +0.4753 + ++0.6086 +0.1993 +0.0923 +0.0997 ++0.1495 +0.6236 +0.0498 +0.1770 ++0.2770 +0.1993 +0.4240 +0.0997 ++0.1495 +0.3540 +0.0498 +0.4466 + ++0.5868 +0.2116 +0.0957 +0.1058 ++0.1587 +0.6053 +0.0529 +0.1831 ++0.2871 +0.2116 +0.3954 +0.1058 ++0.1587 +0.3662 +0.0529 +0.4222 + ++0.5669 +0.2231 +0.0986 +0.1115 ++0.1673 +0.5887 +0.0558 +0.1882 ++0.2957 +0.2231 +0.3697 +0.1115 ++0.1673 +0.3764 +0.0558 +0.4005 + ++0.5481 +0.2339 +0.1010 +0.1170 ++0.1754 +0.5735 +0.0585 +0.1926 ++0.3031 +0.2339 +0.3461 +0.1170 ++0.1754 +0.3852 +0.0585 +0.3809 + ++0.5301 +0.2445 +0.1032 +0.1222 ++0.1834 +0.5591 +0.0611 +0.1965 ++0.3095 +0.2445 +0.3237 +0.1222 ++0.1834 +0.3929 +0.0611 +0.3626 + ++0.5125 +0.2550 +0.1051 +0.1275 ++0.1912 +0.5452 +0.0637 +0.1998 ++0.3152 +0.2550 +0.3023 +0.1275 ++0.1912 +0.3997 +0.0637 +0.3453 + ++0.4948 +0.2656 +0.1067 +0.1328 ++0.1992 +0.5316 +0.0664 +0.2028 ++0.3202 +0.2656 +0.2814 +0.1328 ++0.1992 +0.4057 +0.0664 +0.3287 + ++0.4768 +0.2766 +0.1082 +0.1383 ++0.2075 +0.5179 +0.0692 +0.2055 ++0.3246 +0.2766 +0.2604 +0.1383 ++0.2075 +0.4109 +0.0692 +0.3124 + ++0.4579 +0.2885 +0.1094 +0.1442 ++0.2163 +0.5038 +0.0721 +0.2077 ++0.3283 +0.2885 +0.2390 +0.1442 ++0.2163 +0.4155 +0.0721 +0.2961 + ++0.4371 +0.3017 +0.1104 +0.1508 ++0.2263 +0.4887 +0.0754 +0.2096 ++0.3312 +0.3017 +0.2163 +0.1508 ++0.2263 +0.4192 +0.0754 +0.2791 + ++0.4124 +0.3177 +0.1109 +0.1589 ++0.2383 +0.4713 +0.0794 +0.2109 ++0.3328 +0.3177 +0.1905 +0.1589 ++0.2383 +0.4218 +0.0794 +0.2604 + ++0.3766 +0.3420 +0.1104 +0.1710 ++0.2565 +0.4471 +0.0855 +0.2108 ++0.3311 +0.3420 +0.1559 +0.1710 ++0.2565 +0.4217 +0.0855 +0.2363 + + +[5] P-matrix for branch length 1.000000 ++0.7672 +0.1143 +0.0612 +0.0572 ++0.0858 +0.7663 +0.0286 +0.1194 ++0.1837 +0.1143 +0.6448 +0.0572 ++0.0858 +0.2388 +0.0286 +0.6469 + ++0.7015 +0.1487 +0.0754 +0.0744 ++0.1116 +0.7053 +0.0372 +0.1460 ++0.2263 +0.1487 +0.5506 +0.0744 ++0.1116 +0.2919 +0.0372 +0.5593 + ++0.6628 +0.1695 +0.0829 +0.0848 ++0.1271 +0.6706 +0.0424 +0.1599 ++0.2488 +0.1695 +0.4969 +0.0848 ++0.1271 +0.3198 +0.0424 +0.5107 + ++0.6333 +0.1856 +0.0882 +0.0928 ++0.1392 +0.6448 +0.0464 +0.1696 ++0.2647 +0.1856 +0.4569 +0.0928 ++0.1392 +0.3391 +0.0464 +0.4753 + ++0.6086 +0.1993 +0.0923 +0.0997 ++0.1495 +0.6236 +0.0498 +0.1770 ++0.2770 +0.1993 +0.4240 +0.0997 ++0.1495 +0.3540 +0.0498 +0.4466 + ++0.5868 +0.2116 +0.0957 +0.1058 ++0.1587 +0.6053 +0.0529 +0.1831 ++0.2871 +0.2116 +0.3954 +0.1058 ++0.1587 +0.3662 +0.0529 +0.4222 + ++0.5669 +0.2231 +0.0986 +0.1115 ++0.1673 +0.5887 +0.0558 +0.1882 ++0.2957 +0.2231 +0.3697 +0.1115 ++0.1673 +0.3764 +0.0558 +0.4005 + ++0.5481 +0.2339 +0.1010 +0.1170 ++0.1754 +0.5735 +0.0585 +0.1926 ++0.3031 +0.2339 +0.3461 +0.1170 ++0.1754 +0.3852 +0.0585 +0.3809 + ++0.5301 +0.2445 +0.1032 +0.1222 ++0.1834 +0.5591 +0.0611 +0.1965 ++0.3095 +0.2445 +0.3237 +0.1222 ++0.1834 +0.3929 +0.0611 +0.3626 + ++0.5125 +0.2550 +0.1051 +0.1275 ++0.1912 +0.5452 +0.0637 +0.1998 ++0.3152 +0.2550 +0.3023 +0.1275 ++0.1912 +0.3997 +0.0637 +0.3453 + ++0.4948 +0.2656 +0.1067 +0.1328 ++0.1992 +0.5316 +0.0664 +0.2028 ++0.3202 +0.2656 +0.2814 +0.1328 ++0.1992 +0.4057 +0.0664 +0.3287 + ++0.4768 +0.2766 +0.1082 +0.1383 ++0.2075 +0.5179 +0.0692 +0.2055 ++0.3246 +0.2766 +0.2604 +0.1383 ++0.2075 +0.4109 +0.0692 +0.3124 + ++0.4579 +0.2885 +0.1094 +0.1442 ++0.2163 +0.5038 +0.0721 +0.2077 ++0.3283 +0.2885 +0.2390 +0.1442 ++0.2163 +0.4155 +0.0721 +0.2961 + ++0.4371 +0.3017 +0.1104 +0.1508 ++0.2263 +0.4887 +0.0754 +0.2096 ++0.3312 +0.3017 +0.2163 +0.1508 ++0.2263 +0.4192 +0.0754 +0.2791 + ++0.4124 +0.3177 +0.1109 +0.1589 ++0.2383 +0.4713 +0.0794 +0.2109 ++0.3328 +0.3177 +0.1905 +0.1589 ++0.2383 +0.4218 +0.0794 +0.2604 + ++0.3766 +0.3420 +0.1104 +0.1710 ++0.2565 +0.4471 +0.0855 +0.2108 ++0.3311 +0.3420 +0.1559 +0.1710 ++0.2565 +0.4217 +0.0855 +0.2363 + + +[5] CLV 5: [ {(0.02496,0.04796,0.00157,0.05835),(0.03351,0.06345,0.00289,0.07644),(0.03898,0.07309,0.00398,0.08750),(0.04341,0.08075,0.00499,0.09615),(0.04734,0.08741,0.00600,0.10358),(0.05098,0.09349,0.00703,0.11029),(0.05448,0.09923,0.00811,0.11655),(0.05793,0.10479,0.00926,0.12255),(0.06141,0.11031,0.01051,0.12842),(0.06500,0.11589,0.01190,0.13429),(0.06878,0.12166,0.01348,0.14028),(0.07289,0.12779,0.01533,0.14654),(0.07752,0.13452,0.01760,0.15329),(0.08304,0.14230,0.02057,0.16091),(0.09035,0.15214,0.02496,0.17027),(0.10313,0.16806,0.03405,0.18461)} {(0.89334,0.00038,0.00224,0.00038),(0.85650,0.00071,0.00406,0.00071),(0.83282,0.00098,0.00552,0.00098),(0.81359,0.00124,0.00688,0.00124),(0.79652,0.00149,0.00820,0.00149),(0.78064,0.00176,0.00954,0.00176),(0.76534,0.00204,0.01093,0.00204),(0.75023,0.00234,0.01240,0.00234),(0.73497,0.00267,0.01397,0.00267),(0.71919,0.00304,0.01569,0.00304),(0.70250,0.00346,0.01763,0.00346),(0.68431,0.00396,0.01986,0.00396),(0.66375,0.00457,0.02255,0.00457),(0.63911,0.00539,0.02599,0.00539),(0.60633,0.00662,0.03092,0.00662),(0.54843,0.00924,0.04063,0.00924)} {(0.02462,0.01841,0.00123,0.00122),(0.03288,0.02457,0.00226,0.00225),(0.03811,0.02847,0.00310,0.00307),(0.04231,0.03161,0.00389,0.00385),(0.04601,0.03436,0.00467,0.00462),(0.04942,0.03691,0.00546,0.00540),(0.05267,0.03933,0.00630,0.00621),(0.05585,0.04171,0.00718,0.00708),(0.05904,0.04409,0.00814,0.00801),(0.06230,0.04652,0.00920,0.00905),(0.06571,0.04907,0.01041,0.01023),(0.06937,0.05182,0.01182,0.01160),(0.07345,0.05489,0.01354,0.01327),(0.07825,0.05851,0.01578,0.01544),(0.08447,0.06322,0.01908,0.01862),(0.09492,0.07125,0.02583,0.02511)} {(0.00068,0.88851,0.00068,0.00393),(0.00126,0.85069,0.00126,0.00711),(0.00174,0.82658,0.00174,0.00964),(0.00220,0.80709,0.00220,0.01197),(0.00266,0.78990,0.00266,0.01425),(0.00313,0.77396,0.00313,0.01655),(0.00362,0.75869,0.00362,0.01892),(0.00416,0.74366,0.00416,0.02141),(0.00474,0.72854,0.00474,0.02408),(0.00540,0.71299,0.00540,0.02699),(0.00615,0.69662,0.00615,0.03026),(0.00703,0.67887,0.00703,0.03401),(0.00813,0.65892,0.00813,0.03850),(0.00958,0.63517,0.00958,0.04422),(0.01177,0.60388,0.01177,0.05237),(0.01643,0.54942,0.01643,0.06823)} {(0.01231,0.00061,0.00062,0.01780),(0.01644,0.00112,0.00113,0.02345),(0.01905,0.00154,0.00155,0.02694),(0.02116,0.00192,0.00195,0.02968),(0.02300,0.00231,0.00233,0.03206),(0.02471,0.00270,0.00273,0.03421),(0.02634,0.00311,0.00315,0.03623),(0.02793,0.00354,0.00359,0.03817),(0.02952,0.00401,0.00407,0.04008),(0.03115,0.00453,0.00460,0.04200),(0.03285,0.00511,0.00520,0.04396),(0.03469,0.00580,0.00591,0.04602),(0.03673,0.00663,0.00677,0.04826),(0.03913,0.00772,0.00789,0.05079),(0.04223,0.00931,0.00954,0.05391),(0.04746,0.01255,0.01292,0.05870)} {(0.00034,0.02955,0.00034,0.05713),(0.00063,0.03888,0.00063,0.07420),(0.00087,0.04462,0.00087,0.08443),(0.00110,0.04915,0.00110,0.09231),(0.00133,0.05305,0.00133,0.09897),(0.00156,0.05658,0.00156,0.10489),(0.00181,0.05990,0.00181,0.11034),(0.00208,0.06309,0.00208,0.11547),(0.00237,0.06622,0.00237,0.12041),(0.00270,0.06937,0.00270,0.12524),(0.00307,0.07259,0.00307,0.13005),(0.00352,0.07597,0.00352,0.13494),(0.00406,0.07963,0.00406,0.14002),(0.00479,0.08379,0.00479,0.14548),(0.00588,0.08892,0.00588,0.15166),(0.00821,0.09681,0.00821,0.15950)} {(0.00025,0.00004,0.83473,0.00004),(0.00045,0.00008,0.77966,0.00008),(0.00061,0.00011,0.74485,0.00011),(0.00076,0.00014,0.71691,0.00014),(0.00091,0.00017,0.69239,0.00017),(0.00106,0.00020,0.66979,0.00020),(0.00121,0.00023,0.64824,0.00023),(0.00138,0.00026,0.62716,0.00026),(0.00155,0.00030,0.60607,0.00030),(0.00174,0.00034,0.58451,0.00034),(0.00196,0.00038,0.56195,0.00038),(0.00221,0.00044,0.53769,0.00044),(0.00251,0.00051,0.51065,0.00051),(0.00289,0.00060,0.47883,0.00060),(0.00344,0.00074,0.43750,0.00074),(0.00451,0.00103,0.36746,0.00103)} 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{(0.00034,0.02955,0.00034,0.05713),(0.00063,0.03888,0.00063,0.07420),(0.00087,0.04462,0.00087,0.08443),(0.00110,0.04915,0.00110,0.09231),(0.00133,0.05305,0.00133,0.09897),(0.00156,0.05658,0.00156,0.10489),(0.00181,0.05990,0.00181,0.11034),(0.00208,0.06309,0.00208,0.11547),(0.00237,0.06622,0.00237,0.12041),(0.00270,0.06937,0.00270,0.12524),(0.00307,0.07259,0.00307,0.13005),(0.00352,0.07597,0.00352,0.13494),(0.00406,0.07963,0.00406,0.14002),(0.00479,0.08379,0.00479,0.14548),(0.00588,0.08892,0.00588,0.15166),(0.00821,0.09681,0.00821,0.15950)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.89334,0.00038,0.00224,0.00038),(0.85650,0.00071,0.00406,0.00071),(0.83282,0.00098,0.00552,0.00098),(0.81359,0.00124,0.00688,0.00124),(0.79652,0.00149,0.00820,0.00149),(0.78064,0.00176,0.00954,0.00176),(0.76534,0.00204,0.01093,0.00204),(0.75023,0.00234,0.01240,0.00234),(0.73497,0.00267,0.01397,0.00267),(0.71919,0.00304,0.01569,0.00304),(0.70250,0.00346,0.01763,0.00346),(0.68431,0.00396,0.01986,0.00396),(0.66375,0.00457,0.02255,0.00457),(0.63911,0.00539,0.02599,0.00539),(0.60633,0.00662,0.03092,0.00662),(0.54843,0.00924,0.04063,0.00924)} {(0.89334,0.00038,0.00224,0.00038),(0.85650,0.00071,0.00406,0.00071),(0.83282,0.00098,0.00552,0.00098),(0.81359,0.00124,0.00688,0.00124),(0.79652,0.00149,0.00820,0.00149),(0.78064,0.00176,0.00954,0.00176),(0.76534,0.00204,0.01093,0.00204),(0.75023,0.00234,0.01240,0.00234),(0.73497,0.00267,0.01397,0.00267),(0.71919,0.00304,0.01569,0.00304),(0.70250,0.00346,0.01763,0.00346),(0.68431,0.00396,0.01986,0.00396),(0.66375,0.00457,0.02255,0.00457),(0.63911,0.00539,0.02599,0.00539),(0.60633,0.00662,0.03092,0.00662),(0.54843,0.00924,0.04063,0.00924)} {(0.00025,0.00004,0.83473,0.00004),(0.00045,0.00008,0.77966,0.00008),(0.00061,0.00011,0.74485,0.00011),(0.00076,0.00014,0.71691,0.00014),(0.00091,0.00017,0.69239,0.00017),(0.00106,0.00020,0.66979,0.00020),(0.00121,0.00023,0.64824,0.00023),(0.00138,0.00026,0.62716,0.00026),(0.00155,0.00030,0.60607,0.00030),(0.00174,0.00034,0.58451,0.00034),(0.00196,0.00038,0.56195,0.00038),(0.00221,0.00044,0.53769,0.00044),(0.00251,0.00051,0.51065,0.00051),(0.00289,0.00060,0.47883,0.00060),(0.00344,0.00074,0.43750,0.00074),(0.00451,0.00103,0.36746,0.00103)} ] + + + TEST alpha(ncats) = 5.00(16), mode = MEDIAN 0.329700 0.475124 0.564463 0.639024 0.706955 0.771882 0.836003 0.901001 0.968452 1.040121 1.118293 1.206340 1.309932 1.440322 1.626881 2.065506 [5] P-matrix for branch length 0.100000 @@ -5276,23 +10568,359 @@ +0.3311 +0.3012 +0.2171 +0.1506 +0.2259 +0.4191 +0.0753 +0.2797 -+0.4127 +0.3176 +0.1109 +0.1588 -+0.2382 +0.4715 +0.0794 +0.2109 -+0.3328 +0.3176 +0.1908 +0.1588 -+0.2382 +0.4218 +0.0794 +0.2606 ++0.4127 +0.3176 +0.1109 +0.1588 ++0.2382 +0.4715 +0.0794 +0.2109 ++0.3328 +0.3176 +0.1908 +0.1588 ++0.2382 +0.4218 +0.0794 +0.2606 + ++0.3707 +0.3462 +0.1101 +0.1731 ++0.2596 +0.4433 +0.0865 +0.2106 ++0.3303 +0.3462 +0.1505 +0.1731 ++0.2596 +0.4211 +0.0865 +0.2327 + + +[5] CLV 5: [ {(0.02382,0.04586,0.00143,0.05587),(0.03327,0.06302,0.00285,0.07595),(0.03878,0.07274,0.00393,0.08710),(0.04321,0.08041,0.00494,0.09577),(0.04713,0.08706,0.00594,0.10320),(0.05077,0.09314,0.00697,0.10990),(0.05426,0.09887,0.00804,0.11616),(0.05771,0.10443,0.00918,0.12216),(0.06118,0.10994,0.01042,0.12803),(0.06476,0.11552,0.01180,0.13390),(0.06854,0.12129,0.01338,0.13990),(0.07264,0.12743,0.01522,0.14617),(0.07728,0.13418,0.01748,0.15295),(0.08283,0.14201,0.02045,0.16064),(0.09026,0.15203,0.02490,0.17017),(0.10559,0.17093,0.03603,0.18707)} 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{(0.00062,0.89357,0.00062,0.00358),(0.00124,0.85175,0.00124,0.00700),(0.00172,0.82747,0.00172,0.00953),(0.00218,0.80797,0.00218,0.01186),(0.00263,0.79080,0.00263,0.01412),(0.00310,0.77489,0.00310,0.01641),(0.00359,0.75965,0.00359,0.01876),(0.00412,0.74465,0.00412,0.02124),(0.00470,0.72956,0.00470,0.02389),(0.00535,0.71403,0.00535,0.02679),(0.00610,0.69767,0.00610,0.03004),(0.00698,0.67992,0.00698,0.03378),(0.00807,0.65994,0.00807,0.03826),(0.00952,0.63607,0.00952,0.04399),(0.01174,0.60425,0.01174,0.05228),(0.01747,0.53895,0.01747,0.07151)} 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{(0.00023,0.00004,0.84213,0.00004),(0.00044,0.00008,0.78120,0.00008),(0.00061,0.00011,0.74613,0.00011),(0.00076,0.00014,0.71817,0.00014),(0.00090,0.00016,0.69367,0.00016),(0.00105,0.00019,0.67110,0.00019),(0.00120,0.00022,0.64959,0.00022),(0.00137,0.00026,0.62854,0.00026),(0.00154,0.00029,0.60748,0.00029),(0.00173,0.00033,0.58595,0.00033),(0.00194,0.00038,0.56340,0.00038),(0.00219,0.00044,0.53913,0.00044),(0.00249,0.00050,0.51203,0.00050),(0.00287,0.00060,0.48002,0.00060),(0.00343,0.00073,0.43798,0.00073),(0.00474,0.00109,0.35430,0.00109)} {(0.00062,0.89357,0.00062,0.00358),(0.00124,0.85175,0.00124,0.00700),(0.00172,0.82747,0.00172,0.00953),(0.00218,0.80797,0.00218,0.01186),(0.00263,0.79080,0.00263,0.01412),(0.00310,0.77489,0.00310,0.01641),(0.00359,0.75965,0.00359,0.01876),(0.00412,0.74465,0.00412,0.02124),(0.00470,0.72956,0.00470,0.02389),(0.00535,0.71403,0.00535,0.02679),(0.00610,0.69767,0.00610,0.03004),(0.00698,0.67992,0.00698,0.03378),(0.00807,0.65994,0.00807,0.03826),(0.00952,0.63607,0.00952,0.04399),(0.01174,0.60425,0.01174,0.05228),(0.01747,0.53895,0.01747,0.07151)} {(0.02351,0.01759,0.00112,0.00111),(0.03264,0.02440,0.00223,0.00221),(0.03791,0.02833,0.00307,0.00304),(0.04212,0.03147,0.00385,0.00381),(0.04582,0.03422,0.00463,0.00457),(0.04922,0.03676,0.00542,0.00535),(0.05247,0.03918,0.00624,0.00616),(0.05565,0.04155,0.00712,0.00702),(0.05883,0.04393,0.00807,0.00795),(0.06208,0.04636,0.00913,0.00898),(0.06549,0.04891,0.01033,0.01015),(0.06915,0.05166,0.01173,0.01151),(0.07325,0.05473,0.01345,0.01318),(0.07807,0.05837,0.01569,0.01535),(0.08439,0.06317,0.01903,0.01858),(0.09686,0.07277,0.02729,0.02651)} {(0.89824,0.00035,0.00204,0.00035),(0.85754,0.00070,0.00400,0.00070),(0.83370,0.00097,0.00546,0.00097),(0.81446,0.00123,0.00681,0.00123),(0.79742,0.00148,0.00813,0.00148),(0.78156,0.00174,0.00946,0.00174),(0.76630,0.00202,0.01084,0.00202),(0.75123,0.00232,0.01230,0.00232),(0.73599,0.00264,0.01386,0.00264),(0.72025,0.00301,0.01558,0.00301),(0.70357,0.00343,0.01750,0.00343),(0.68540,0.00392,0.01973,0.00392),(0.66480,0.00454,0.02241,0.00454),(0.64004,0.00536,0.02585,0.00536),(0.60672,0.00660,0.03086,0.00660),(0.53717,0.00982,0.04265,0.00982)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.89824,0.00035,0.00204,0.00035),(0.85754,0.00070,0.00400,0.00070),(0.83370,0.00097,0.00546,0.00097),(0.81446,0.00123,0.00681,0.00123),(0.79742,0.00148,0.00813,0.00148),(0.78156,0.00174,0.00946,0.00174),(0.76630,0.00202,0.01084,0.00202),(0.75123,0.00232,0.01230,0.00232),(0.73599,0.00264,0.01386,0.00264),(0.72025,0.00301,0.01558,0.00301),(0.70357,0.00343,0.01750,0.00343),(0.68540,0.00392,0.01973,0.00392),(0.66480,0.00454,0.02241,0.00454),(0.64004,0.00536,0.02585,0.00536),(0.60672,0.00660,0.03086,0.00660),(0.53717,0.00982,0.04265,0.00982)} {(0.00015,0.00089,0.00015,0.83792),(0.00031,0.00175,0.00031,0.77627),(0.00043,0.00238,0.00043,0.74103),(0.00054,0.00296,0.00054,0.71305),(0.00066,0.00353,0.00066,0.68864),(0.00077,0.00410,0.00077,0.66623),(0.00090,0.00469,0.00090,0.64495),(0.00103,0.00531,0.00103,0.62420),(0.00118,0.00597,0.00118,0.60350),(0.00134,0.00670,0.00134,0.58241),(0.00152,0.00751,0.00152,0.56041),(0.00174,0.00844,0.00174,0.53682),(0.00202,0.00957,0.00202,0.51060),(0.00238,0.01100,0.00238,0.47979),(0.00293,0.01307,0.00293,0.43959),(0.00437,0.01788,0.00437,0.36051)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00031,0.02827,0.00031,0.05475),(0.00062,0.03862,0.00062,0.07373),(0.00086,0.04441,0.00086,0.08406),(0.00109,0.04894,0.00109,0.09196),(0.00132,0.05284,0.00132,0.09863),(0.00155,0.05638,0.00155,0.10455),(0.00180,0.05969,0.00180,0.11000),(0.00206,0.06288,0.00206,0.11514),(0.00235,0.06601,0.00235,0.12008),(0.00268,0.06916,0.00268,0.12492),(0.00305,0.07238,0.00305,0.12975),(0.00349,0.07577,0.00349,0.13466),(0.00404,0.07945,0.00404,0.13977),(0.00476,0.08364,0.00476,0.14528),(0.00587,0.08886,0.00587,0.15159),(0.00873,0.09816,0.00873,0.16056)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.89824,0.00035,0.00204,0.00035),(0.85754,0.00070,0.00400,0.00070),(0.83370,0.00097,0.00546,0.00097),(0.81446,0.00123,0.00681,0.00123),(0.79742,0.00148,0.00813,0.00148),(0.78156,0.00174,0.00946,0.00174),(0.76630,0.00202,0.01084,0.00202),(0.75123,0.00232,0.01230,0.00232),(0.73599,0.00264,0.01386,0.00264),(0.72025,0.00301,0.01558,0.00301),(0.70357,0.00343,0.01750,0.00343),(0.68540,0.00392,0.01973,0.00392),(0.66480,0.00454,0.02241,0.00454),(0.64004,0.00536,0.02585,0.00536),(0.60672,0.00660,0.03086,0.00660),(0.53717,0.00982,0.04265,0.00982)} {(0.89824,0.00035,0.00204,0.00035),(0.85754,0.00070,0.00400,0.00070),(0.83370,0.00097,0.00546,0.00097),(0.81446,0.00123,0.00681,0.00123),(0.79742,0.00148,0.00813,0.00148),(0.78156,0.00174,0.00946,0.00174),(0.76630,0.00202,0.01084,0.00202),(0.75123,0.00232,0.01230,0.00232),(0.73599,0.00264,0.01386,0.00264),(0.72025,0.00301,0.01558,0.00301),(0.70357,0.00343,0.01750,0.00343),(0.68540,0.00392,0.01973,0.00392),(0.66480,0.00454,0.02241,0.00454),(0.64004,0.00536,0.02585,0.00536),(0.60672,0.00660,0.03086,0.00660),(0.53717,0.00982,0.04265,0.00982)} {(0.00023,0.00004,0.84213,0.00004),(0.00044,0.00008,0.78120,0.00008),(0.00061,0.00011,0.74613,0.00011),(0.00076,0.00014,0.71817,0.00014),(0.00090,0.00016,0.69367,0.00016),(0.00105,0.00019,0.67110,0.00019),(0.00120,0.00022,0.64959,0.00022),(0.00137,0.00026,0.62854,0.00026),(0.00154,0.00029,0.60748,0.00029),(0.00173,0.00033,0.58595,0.00033),(0.00194,0.00038,0.56340,0.00038),(0.00219,0.00044,0.53913,0.00044),(0.00249,0.00050,0.51203,0.00050),(0.00287,0.00060,0.48002,0.00060),(0.00343,0.00073,0.43798,0.00073),(0.00474,0.00109,0.35430,0.00109)} ] + + + TEST alpha(ncats) = 10.00(16), mode = MEAN + +0.499646 0.615338 0.688394 0.747621 0.800287 0.849601 0.897432 0.945129 0.993875 1.044912 1.099775 1.160652 1.231124 1.318109 1.438808 1.669295 +[6] P-matrix for branch length 0.100000 ++0.9600 +0.0189 +0.0116 +0.0095 ++0.0142 +0.9580 +0.0047 +0.0230 ++0.0347 +0.0189 +0.9369 +0.0095 ++0.0142 +0.0461 +0.0047 +0.9350 + ++0.9511 +0.0232 +0.0141 +0.0116 ++0.0174 +0.9488 +0.0058 +0.0280 ++0.0423 +0.0232 +0.9229 +0.0116 ++0.0174 +0.0561 +0.0058 +0.9207 + ++0.9456 +0.0259 +0.0157 +0.0129 ++0.0194 +0.9430 +0.0065 +0.0311 ++0.0470 +0.0259 +0.9142 +0.0129 ++0.0194 +0.0623 +0.0065 +0.9119 + ++0.9411 +0.0280 +0.0169 +0.0140 ++0.0210 +0.9384 +0.0070 +0.0336 ++0.0507 +0.0280 +0.9073 +0.0140 ++0.0210 +0.0672 +0.0070 +0.9048 + ++0.9371 +0.0299 +0.0180 +0.0150 ++0.0224 +0.9343 +0.0075 +0.0358 ++0.0540 +0.0299 +0.9011 +0.0150 ++0.0224 +0.0716 +0.0075 +0.8985 + ++0.9335 +0.0317 +0.0190 +0.0158 ++0.0238 +0.9305 +0.0079 +0.0378 ++0.0571 +0.0317 +0.8954 +0.0158 ++0.0238 +0.0756 +0.0079 +0.8927 + ++0.9299 +0.0334 +0.0200 +0.0167 ++0.0250 +0.9269 +0.0083 +0.0397 ++0.0600 +0.0334 +0.8899 +0.0167 ++0.0250 +0.0795 +0.0083 +0.8872 + ++0.9264 +0.0351 +0.0210 +0.0175 ++0.0263 +0.9233 +0.0088 +0.0416 ++0.0630 +0.0351 +0.8844 +0.0175 ++0.0263 +0.0833 +0.0088 +0.8816 + ++0.9228 +0.0368 +0.0220 +0.0184 ++0.0276 +0.9196 +0.0092 +0.0436 ++0.0659 +0.0368 +0.8789 +0.0184 ++0.0276 +0.0871 +0.0092 +0.8761 + ++0.9191 +0.0386 +0.0230 +0.0193 ++0.0289 +0.9158 +0.0096 +0.0456 ++0.0690 +0.0386 +0.8732 +0.0193 ++0.0289 +0.0911 +0.0096 +0.8703 + ++0.9152 +0.0405 +0.0241 +0.0203 ++0.0304 +0.9118 +0.0101 +0.0477 ++0.0722 +0.0405 +0.8670 +0.0203 ++0.0304 +0.0954 +0.0101 +0.8641 + ++0.9108 +0.0426 +0.0253 +0.0213 ++0.0320 +0.9073 +0.0107 +0.0500 ++0.0758 +0.0426 +0.8603 +0.0213 ++0.0320 +0.1001 +0.0107 +0.8573 + ++0.9058 +0.0451 +0.0266 +0.0225 ++0.0338 +0.9022 +0.0113 +0.0527 ++0.0799 +0.0451 +0.8526 +0.0225 ++0.0338 +0.1054 +0.0113 +0.8495 + ++0.8997 +0.0480 +0.0283 +0.0240 ++0.0360 +0.8960 +0.0120 +0.0559 ++0.0848 +0.0480 +0.8431 +0.0240 ++0.0360 +0.1119 +0.0120 +0.8401 + ++0.8913 +0.0521 +0.0305 +0.0261 ++0.0391 +0.8875 +0.0130 +0.0603 ++0.0915 +0.0521 +0.8302 +0.0261 ++0.0391 +0.1206 +0.0130 +0.8272 + ++0.8756 +0.0598 +0.0347 +0.0299 ++0.0449 +0.8718 +0.0150 +0.0684 ++0.1040 +0.0598 +0.8062 +0.0299 ++0.0449 +0.1368 +0.0150 +0.8034 + + +[6] P-matrix for branch length 0.200000 ++0.9224 +0.0370 +0.0221 +0.0185 ++0.0277 +0.9192 +0.0092 +0.0438 ++0.0662 +0.0370 +0.8783 +0.0185 ++0.0277 +0.0876 +0.0092 +0.8754 + ++0.9058 +0.0450 +0.0266 +0.0225 ++0.0338 +0.9023 +0.0113 +0.0527 ++0.0798 +0.0450 +0.8526 +0.0225 ++0.0338 +0.1054 +0.0113 +0.8496 + ++0.8956 +0.0500 +0.0294 +0.0250 ++0.0375 +0.8919 +0.0125 +0.0581 ++0.0881 +0.0500 +0.8368 +0.0250 ++0.0375 +0.1162 +0.0125 +0.8338 + ++0.8874 +0.0540 +0.0315 +0.0270 ++0.0405 +0.8836 +0.0135 +0.0623 ++0.0946 +0.0540 +0.8243 +0.0270 ++0.0405 +0.1247 +0.0135 +0.8213 + ++0.8802 +0.0576 +0.0334 +0.0288 ++0.0432 +0.8764 +0.0144 +0.0660 ++0.1003 +0.0576 +0.8133 +0.0288 ++0.0432 +0.1321 +0.0144 +0.8104 + ++0.8736 +0.0608 +0.0352 +0.0304 ++0.0456 +0.8698 +0.0152 +0.0694 ++0.1056 +0.0608 +0.8032 +0.0304 ++0.0456 +0.1388 +0.0152 +0.8003 + ++0.8672 +0.0640 +0.0368 +0.0320 ++0.0480 +0.8634 +0.0160 +0.0726 ++0.1105 +0.0640 +0.7935 +0.0320 ++0.0480 +0.1453 +0.0160 +0.7908 + ++0.8609 +0.0671 +0.0385 +0.0335 ++0.0503 +0.8572 +0.0168 +0.0758 ++0.1154 +0.0671 +0.7840 +0.0335 ++0.0503 +0.1515 +0.0168 +0.7814 + ++0.8546 +0.0702 +0.0401 +0.0351 ++0.0527 +0.8509 +0.0176 +0.0789 ++0.1203 +0.0702 +0.7744 +0.0351 ++0.0527 +0.1578 +0.0176 +0.7720 + ++0.8481 +0.0735 +0.0418 +0.0367 ++0.0551 +0.8444 +0.0184 +0.0821 ++0.1253 +0.0735 +0.7645 +0.0367 ++0.0551 +0.1643 +0.0184 +0.7623 + ++0.8411 +0.0769 +0.0435 +0.0385 ++0.0577 +0.8376 +0.0192 +0.0855 ++0.1305 +0.0769 +0.7541 +0.0385 ++0.0577 +0.1711 +0.0192 +0.7520 + ++0.8335 +0.0807 +0.0454 +0.0404 ++0.0605 +0.8301 +0.0202 +0.0892 ++0.1363 +0.0807 +0.7427 +0.0404 ++0.0605 +0.1784 +0.0202 +0.7409 + ++0.8249 +0.0851 +0.0476 +0.0425 ++0.0638 +0.8216 +0.0213 +0.0933 ++0.1427 +0.0851 +0.7297 +0.0425 ++0.0638 +0.1867 +0.0213 +0.7283 + ++0.8144 +0.0903 +0.0501 +0.0452 ++0.0677 +0.8114 +0.0226 +0.0983 ++0.1504 +0.0903 +0.7141 +0.0452 ++0.0677 +0.1965 +0.0226 +0.7132 + ++0.8002 +0.0975 +0.0536 +0.0487 ++0.0731 +0.7977 +0.0244 +0.1048 ++0.1607 +0.0975 +0.6931 +0.0487 ++0.0731 +0.2096 +0.0244 +0.6929 + ++0.7743 +0.1107 +0.0596 +0.0554 ++0.0831 +0.7729 +0.0277 +0.1164 ++0.1789 +0.1107 +0.6550 +0.0554 ++0.0831 +0.2327 +0.0277 +0.6565 + + +[6] P-matrix for branch length 1.000000 ++0.6921 +0.1537 +0.0773 +0.0769 ++0.1153 +0.6968 +0.0384 +0.1495 ++0.2319 +0.1537 +0.5375 +0.0769 ++0.1153 +0.2989 +0.0384 +0.5473 + ++0.6437 +0.1799 +0.0864 +0.0900 ++0.1349 +0.6539 +0.0450 +0.1662 ++0.2592 +0.1799 +0.4709 +0.0900 ++0.1349 +0.3325 +0.0450 +0.4876 + ++0.6165 +0.1950 +0.0911 +0.0975 ++0.1462 +0.6303 +0.0487 +0.1747 ++0.2732 +0.1950 +0.4343 +0.0975 ++0.1462 +0.3494 +0.0487 +0.4556 + ++0.5960 +0.2064 +0.0943 +0.1032 ++0.1548 +0.6130 +0.0516 +0.1806 ++0.2830 +0.2064 +0.4074 +0.1032 ++0.1548 +0.3612 +0.0516 +0.4324 + ++0.5790 +0.2161 +0.0969 +0.1080 ++0.1621 +0.5988 +0.0540 +0.1851 ++0.2906 +0.2161 +0.3853 +0.1080 ++0.1621 +0.3703 +0.0540 +0.4136 + ++0.5640 +0.2247 +0.0989 +0.1123 ++0.1685 +0.5864 +0.0562 +0.1889 ++0.2968 +0.2247 +0.3661 +0.1123 ++0.1685 +0.3778 +0.0562 +0.3975 + ++0.5503 +0.2326 +0.1007 +0.1163 ++0.1745 +0.5752 +0.0582 +0.1921 ++0.3022 +0.2326 +0.3488 +0.1163 ++0.1745 +0.3842 +0.0582 +0.3831 + ++0.5374 +0.2402 +0.1023 +0.1201 ++0.1802 +0.5648 +0.0601 +0.1950 ++0.3070 +0.2402 +0.3327 +0.1201 ++0.1802 +0.3899 +0.0601 +0.3699 + ++0.5248 +0.2476 +0.1038 +0.1238 ++0.1857 +0.5549 +0.0619 +0.1975 ++0.3113 +0.2476 +0.3173 +0.1238 ++0.1857 +0.3950 +0.0619 +0.3574 + ++0.5125 +0.2550 +0.1051 +0.1275 ++0.1912 +0.5452 +0.0637 +0.1998 ++0.3152 +0.2550 +0.3023 +0.1275 ++0.1912 +0.3997 +0.0637 +0.3454 + ++0.5000 +0.2625 +0.1063 +0.1312 ++0.1969 +0.5355 +0.0656 +0.2020 ++0.3188 +0.2625 +0.2874 +0.1312 ++0.1969 +0.4040 +0.0656 +0.3335 + ++0.4870 +0.2704 +0.1074 +0.1352 ++0.2028 +0.5256 +0.0676 +0.2040 ++0.3222 +0.2704 +0.2722 +0.1352 ++0.2028 +0.4081 +0.0676 +0.3216 + ++0.4731 +0.2790 +0.1085 +0.1395 ++0.2092 +0.5151 +0.0697 +0.2059 ++0.3254 +0.2790 +0.2562 +0.1395 ++0.2092 +0.4119 +0.0697 +0.3092 + ++0.4574 +0.2888 +0.1095 +0.1444 ++0.2166 +0.5035 +0.0722 +0.2078 ++0.3284 +0.2888 +0.2385 +0.1444 ++0.2166 +0.4156 +0.0722 +0.2957 + ++0.4381 +0.3011 +0.1104 +0.1505 ++0.2258 +0.4894 +0.0753 +0.2095 ++0.3311 +0.3011 +0.2173 +0.1505 ++0.2258 +0.4191 +0.0753 +0.2799 + ++0.4077 +0.3209 +0.1110 +0.1604 ++0.2407 +0.4681 +0.0802 +0.2110 ++0.3329 +0.3209 +0.1858 +0.1604 ++0.2407 +0.4221 +0.0802 +0.2570 + + +[6] P-matrix for branch length 1.000000 ++0.6921 +0.1537 +0.0773 +0.0769 ++0.1153 +0.6968 +0.0384 +0.1495 ++0.2319 +0.1537 +0.5375 +0.0769 ++0.1153 +0.2989 +0.0384 +0.5473 + ++0.6437 +0.1799 +0.0864 +0.0900 ++0.1349 +0.6539 +0.0450 +0.1662 ++0.2592 +0.1799 +0.4709 +0.0900 ++0.1349 +0.3325 +0.0450 +0.4876 + ++0.6165 +0.1950 +0.0911 +0.0975 ++0.1462 +0.6303 +0.0487 +0.1747 ++0.2732 +0.1950 +0.4343 +0.0975 ++0.1462 +0.3494 +0.0487 +0.4556 + ++0.5960 +0.2064 +0.0943 +0.1032 ++0.1548 +0.6130 +0.0516 +0.1806 ++0.2830 +0.2064 +0.4074 +0.1032 ++0.1548 +0.3612 +0.0516 +0.4324 + ++0.5790 +0.2161 +0.0969 +0.1080 ++0.1621 +0.5988 +0.0540 +0.1851 ++0.2906 +0.2161 +0.3853 +0.1080 ++0.1621 +0.3703 +0.0540 +0.4136 + ++0.5640 +0.2247 +0.0989 +0.1123 ++0.1685 +0.5864 +0.0562 +0.1889 ++0.2968 +0.2247 +0.3661 +0.1123 ++0.1685 +0.3778 +0.0562 +0.3975 + ++0.5503 +0.2326 +0.1007 +0.1163 ++0.1745 +0.5752 +0.0582 +0.1921 ++0.3022 +0.2326 +0.3488 +0.1163 ++0.1745 +0.3842 +0.0582 +0.3831 + ++0.5374 +0.2402 +0.1023 +0.1201 ++0.1802 +0.5648 +0.0601 +0.1950 ++0.3070 +0.2402 +0.3327 +0.1201 ++0.1802 +0.3899 +0.0601 +0.3699 + ++0.5248 +0.2476 +0.1038 +0.1238 ++0.1857 +0.5549 +0.0619 +0.1975 ++0.3113 +0.2476 +0.3173 +0.1238 ++0.1857 +0.3950 +0.0619 +0.3574 + ++0.5125 +0.2550 +0.1051 +0.1275 ++0.1912 +0.5452 +0.0637 +0.1998 ++0.3152 +0.2550 +0.3023 +0.1275 ++0.1912 +0.3997 +0.0637 +0.3454 + ++0.5000 +0.2625 +0.1063 +0.1312 ++0.1969 +0.5355 +0.0656 +0.2020 ++0.3188 +0.2625 +0.2874 +0.1312 ++0.1969 +0.4040 +0.0656 +0.3335 + ++0.4870 +0.2704 +0.1074 +0.1352 ++0.2028 +0.5256 +0.0676 +0.2040 ++0.3222 +0.2704 +0.2722 +0.1352 ++0.2028 +0.4081 +0.0676 +0.3216 + ++0.4731 +0.2790 +0.1085 +0.1395 ++0.2092 +0.5151 +0.0697 +0.2059 ++0.3254 +0.2790 +0.2562 +0.1395 ++0.2092 +0.4119 +0.0697 +0.3092 + ++0.4574 +0.2888 +0.1095 +0.1444 ++0.2166 +0.5035 +0.0722 +0.2078 ++0.3284 +0.2888 +0.2385 +0.1444 ++0.2166 +0.4156 +0.0722 +0.2957 + ++0.4381 +0.3011 +0.1104 +0.1505 ++0.2258 +0.4894 +0.0753 +0.2095 ++0.3311 +0.3011 +0.2173 +0.1505 ++0.2258 +0.4191 +0.0753 +0.2799 -+0.3707 +0.3462 +0.1101 +0.1731 -+0.2596 +0.4433 +0.0865 +0.2106 -+0.3303 +0.3462 +0.1505 +0.1731 -+0.2596 +0.4211 +0.0865 +0.2327 ++0.4077 +0.3209 +0.1110 +0.1604 ++0.2407 +0.4681 +0.0802 +0.2110 ++0.3329 +0.3209 +0.1858 +0.1604 ++0.2407 +0.4221 +0.0802 +0.2570 -[5] CLV 5: [ {(0.02382,0.04586,0.00143,0.05587),(0.03327,0.06302,0.00285,0.07595),(0.03878,0.07274,0.00393,0.08710),(0.04321,0.08041,0.00494,0.09577),(0.04713,0.08706,0.00594,0.10320),(0.05077,0.09314,0.00697,0.10990),(0.05426,0.09887,0.00804,0.11616),(0.05771,0.10443,0.00918,0.12216),(0.06118,0.10994,0.01042,0.12803),(0.06476,0.11552,0.01180,0.13390),(0.06854,0.12129,0.01338,0.13990),(0.07264,0.12743,0.01522,0.14617),(0.07728,0.13418,0.01748,0.15295),(0.08283,0.14201,0.02045,0.16064),(0.09026,0.15203,0.02490,0.17017),(0.10559,0.17093,0.03603,0.18707)} {(0.89824,0.00035,0.00204,0.00035),(0.85754,0.00070,0.00400,0.00070),(0.83370,0.00097,0.00546,0.00097),(0.81446,0.00123,0.00681,0.00123),(0.79742,0.00148,0.00813,0.00148),(0.78156,0.00174,0.00946,0.00174),(0.76630,0.00202,0.01084,0.00202),(0.75123,0.00232,0.01230,0.00232),(0.73599,0.00264,0.01386,0.00264),(0.72025,0.00301,0.01558,0.00301),(0.70357,0.00343,0.01750,0.00343),(0.68540,0.00392,0.01973,0.00392),(0.66480,0.00454,0.02241,0.00454),(0.64004,0.00536,0.02585,0.00536),(0.60672,0.00660,0.03086,0.00660),(0.53717,0.00982,0.04265,0.00982)} {(0.02351,0.01759,0.00112,0.00111),(0.03264,0.02440,0.00223,0.00221),(0.03791,0.02833,0.00307,0.00304),(0.04212,0.03147,0.00385,0.00381),(0.04582,0.03422,0.00463,0.00457),(0.04922,0.03676,0.00542,0.00535),(0.05247,0.03918,0.00624,0.00616),(0.05565,0.04155,0.00712,0.00702),(0.05883,0.04393,0.00807,0.00795),(0.06208,0.04636,0.00913,0.00898),(0.06549,0.04891,0.01033,0.01015),(0.06915,0.05166,0.01173,0.01151),(0.07325,0.05473,0.01345,0.01318),(0.07807,0.05837,0.01569,0.01535),(0.08439,0.06317,0.01903,0.01858),(0.09686,0.07277,0.02729,0.02651)} {(0.00062,0.89357,0.00062,0.00358),(0.00124,0.85175,0.00124,0.00700),(0.00172,0.82747,0.00172,0.00953),(0.00218,0.80797,0.00218,0.01186),(0.00263,0.79080,0.00263,0.01412),(0.00310,0.77489,0.00310,0.01641),(0.00359,0.75965,0.00359,0.01876),(0.00412,0.74465,0.00412,0.02124),(0.00470,0.72956,0.00470,0.02389),(0.00535,0.71403,0.00535,0.02679),(0.00610,0.69767,0.00610,0.03004),(0.00698,0.67992,0.00698,0.03378),(0.00807,0.65994,0.00807,0.03826),(0.00952,0.63607,0.00952,0.04399),(0.01174,0.60425,0.01174,0.05228),(0.01747,0.53895,0.01747,0.07151)} {(0.01175,0.00056,0.00056,0.01703),(0.01632,0.00111,0.00112,0.02329),(0.01896,0.00152,0.00153,0.02681),(0.02106,0.00191,0.00193,0.02956),(0.02291,0.00229,0.00231,0.03193),(0.02461,0.00267,0.00271,0.03408),(0.02623,0.00308,0.00312,0.03610),(0.02782,0.00351,0.00356,0.03804),(0.02941,0.00397,0.00404,0.03995),(0.03104,0.00449,0.00456,0.04187),(0.03274,0.00507,0.00516,0.04384),(0.03458,0.00576,0.00587,0.04590),(0.03662,0.00659,0.00672,0.04814),(0.03904,0.00768,0.00785,0.05070),(0.04220,0.00929,0.00952,0.05388),(0.04843,0.01325,0.01365,0.05951)} {(0.00031,0.02827,0.00031,0.05475),(0.00062,0.03862,0.00062,0.07373),(0.00086,0.04441,0.00086,0.08406),(0.00109,0.04894,0.00109,0.09196),(0.00132,0.05284,0.00132,0.09863),(0.00155,0.05638,0.00155,0.10455),(0.00180,0.05969,0.00180,0.11000),(0.00206,0.06288,0.00206,0.11514),(0.00235,0.06601,0.00235,0.12008),(0.00268,0.06916,0.00268,0.12492),(0.00305,0.07238,0.00305,0.12975),(0.00349,0.07577,0.00349,0.13466),(0.00404,0.07945,0.00404,0.13977),(0.00476,0.08364,0.00476,0.14528),(0.00587,0.08886,0.00587,0.15159),(0.00873,0.09816,0.00873,0.16056)} 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{(0.00049,0.00009,0.77140,0.00009),(0.00071,0.00013,0.72693,0.00013),(0.00086,0.00016,0.70027,0.00016),(0.00100,0.00018,0.67944,0.00018),(0.00112,0.00021,0.66147,0.00021),(0.00124,0.00023,0.64512,0.00023),(0.00136,0.00026,0.62968,0.00026),(0.00148,0.00028,0.61468,0.00028),(0.00161,0.00031,0.59975,0.00031),(0.00174,0.00034,0.58454,0.00034),(0.00189,0.00037,0.56865,0.00037),(0.00206,0.00041,0.55158,0.00041),(0.00226,0.00045,0.53250,0.00045),(0.00251,0.00051,0.50995,0.00051),(0.00287,0.00059,0.48038,0.00059),(0.00356,0.00077,0.42900,0.00077)} {(0.00137,0.84498,0.00137,0.00767),(0.00203,0.81409,0.00203,0.01110),(0.00250,0.79544,0.00250,0.01349),(0.00292,0.78078,0.00292,0.01554),(0.00331,0.76808,0.00331,0.01744),(0.00370,0.75647,0.00370,0.01927),(0.00409,0.74546,0.00409,0.02110),(0.00450,0.73472,0.00450,0.02297),(0.00493,0.72399,0.00493,0.02491),(0.00540,0.71301,0.00540,0.02699),(0.00592,0.70149,0.00592,0.02926),(0.00651,0.68904,0.00651,0.03183),(0.00723,0.67506,0.00723,0.03484),(0.00816,0.65840,0.00816,0.03862),(0.00951,0.63634,0.00951,0.04393),(0.01226,0.59737,0.01226,0.05416)} {(0.03412,0.02550,0.00245,0.00243),(0.04081,0.03048,0.00360,0.00356),(0.04482,0.03348,0.00441,0.00436),(0.04796,0.03582,0.00512,0.00505),(0.05067,0.03784,0.00578,0.00570),(0.05314,0.03968,0.00642,0.00633),(0.05547,0.04142,0.00707,0.00697),(0.05774,0.04311,0.00774,0.00762),(0.06000,0.04480,0.00844,0.00831),(0.06229,0.04652,0.00920,0.00905),(0.06469,0.04832,0.01004,0.00987),(0.06727,0.05025,0.01100,0.01080),(0.07015,0.05241,0.01214,0.01191),(0.07356,0.05497,0.01359,0.01331),(0.07802,0.05833,0.01566,0.01533),(0.08574,0.06419,0.01981,0.01933)} {(0.85091,0.00077,0.00439,0.00077),(0.82051,0.00114,0.00637,0.00114),(0.80203,0.00141,0.00776,0.00141),(0.78744,0.00164,0.00896,0.00164),(0.77475,0.00186,0.01007,0.00186),(0.76312,0.00208,0.01114,0.00208),(0.75205,0.00230,0.01222,0.00230),(0.74121,0.00253,0.01331,0.00253),(0.73036,0.00277,0.01446,0.00277),(0.71921,0.00304,0.01569,0.00304),(0.70747,0.00333,0.01704,0.00333),(0.69475,0.00366,0.01856,0.00366),(0.68039,0.00407,0.02036,0.00407),(0.66321,0.00459,0.02262,0.00459),(0.64032,0.00535,0.02581,0.00535),(0.59947,0.00690,0.03201,0.00690)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.85091,0.00077,0.00439,0.00077),(0.82051,0.00114,0.00637,0.00114),(0.80203,0.00141,0.00776,0.00141),(0.78744,0.00164,0.00896,0.00164),(0.77475,0.00186,0.01007,0.00186),(0.76312,0.00208,0.01114,0.00208),(0.75205,0.00230,0.01222,0.00230),(0.74121,0.00253,0.01331,0.00253),(0.73036,0.00277,0.01446,0.00277),(0.71921,0.00304,0.01569,0.00304),(0.70747,0.00333,0.01704,0.00333),(0.69475,0.00366,0.01856,0.00366),(0.68039,0.00407,0.02036,0.00407),(0.66321,0.00459,0.02262,0.00459),(0.64032,0.00535,0.02581,0.00535),(0.59947,0.00690,0.03201,0.00690)} {(0.00034,0.00192,0.00034,0.76640),(0.00051,0.00278,0.00051,0.72180),(0.00063,0.00337,0.00063,0.69521),(0.00073,0.00389,0.00073,0.67450),(0.00083,0.00436,0.00083,0.65670),(0.00093,0.00482,0.00093,0.64054),(0.00102,0.00528,0.00102,0.62532),(0.00112,0.00574,0.00112,0.61057),(0.00123,0.00623,0.00123,0.59592),(0.00135,0.00675,0.00135,0.58103),(0.00148,0.00732,0.00148,0.56553),(0.00163,0.00796,0.00163,0.54891),(0.00181,0.00871,0.00181,0.53040),(0.00204,0.00965,0.00204,0.50860),(0.00238,0.01098,0.00238,0.48013),(0.00307,0.01354,0.00307,0.43104)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00068,0.04025,0.00068,0.07666),(0.00101,0.04753,0.00101,0.08952),(0.00125,0.05180,0.00125,0.09685),(0.00146,0.05508,0.00146,0.10239),(0.00166,0.05787,0.00166,0.10702),(0.00185,0.06037,0.00185,0.11111),(0.00205,0.06271,0.00205,0.11487),(0.00225,0.06495,0.00225,0.11842),(0.00246,0.06715,0.00246,0.12185),(0.00270,0.06936,0.00270,0.12523),(0.00296,0.07164,0.00296,0.12865),(0.00326,0.07405,0.00326,0.13218),(0.00362,0.07668,0.00362,0.13594),(0.00408,0.07973,0.00408,0.14015),(0.00475,0.08359,0.00475,0.14523),(0.00613,0.08994,0.00613,0.15279)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.85091,0.00077,0.00439,0.00077),(0.82051,0.00114,0.00637,0.00114),(0.80203,0.00141,0.00776,0.00141),(0.78744,0.00164,0.00896,0.00164),(0.77475,0.00186,0.01007,0.00186),(0.76312,0.00208,0.01114,0.00208),(0.75205,0.00230,0.01222,0.00230),(0.74121,0.00253,0.01331,0.00253),(0.73036,0.00277,0.01446,0.00277),(0.71921,0.00304,0.01569,0.00304),(0.70747,0.00333,0.01704,0.00333),(0.69475,0.00366,0.01856,0.00366),(0.68039,0.00407,0.02036,0.00407),(0.66321,0.00459,0.02262,0.00459),(0.64032,0.00535,0.02581,0.00535),(0.59947,0.00690,0.03201,0.00690)} {(0.85091,0.00077,0.00439,0.00077),(0.82051,0.00114,0.00637,0.00114),(0.80203,0.00141,0.00776,0.00141),(0.78744,0.00164,0.00896,0.00164),(0.77475,0.00186,0.01007,0.00186),(0.76312,0.00208,0.01114,0.00208),(0.75205,0.00230,0.01222,0.00230),(0.74121,0.00253,0.01331,0.00253),(0.73036,0.00277,0.01446,0.00277),(0.71921,0.00304,0.01569,0.00304),(0.70747,0.00333,0.01704,0.00333),(0.69475,0.00366,0.01856,0.00366),(0.68039,0.00407,0.02036,0.00407),(0.66321,0.00459,0.02262,0.00459),(0.64032,0.00535,0.02581,0.00535),(0.59947,0.00690,0.03201,0.00690)} {(0.00049,0.00009,0.77140,0.00009),(0.00071,0.00013,0.72693,0.00013),(0.00086,0.00016,0.70027,0.00016),(0.00100,0.00018,0.67944,0.00018),(0.00112,0.00021,0.66147,0.00021),(0.00124,0.00023,0.64512,0.00023),(0.00136,0.00026,0.62968,0.00026),(0.00148,0.00028,0.61468,0.00028),(0.00161,0.00031,0.59975,0.00031),(0.00174,0.00034,0.58454,0.00034),(0.00189,0.00037,0.56865,0.00037),(0.00206,0.00041,0.55158,0.00041),(0.00226,0.00045,0.53250,0.00045),(0.00251,0.00051,0.50995,0.00051),(0.00287,0.00059,0.48038,0.00059),(0.00356,0.00077,0.42900,0.00077)} ] - TEST alpha(ncats) = 10.00(16) + TEST alpha(ncats) = 10.00(16), mode = MEDIAN 0.481913 0.612355 0.686134 0.745487 0.798149 0.847415 0.895181 0.942807 0.991482 1.042454 1.097269 1.158138 1.228706 1.316117 1.438827 1.717565 [6] P-matrix for branch length 0.100000 @@ -5628,7 +11256,343 @@ [6] CLV 7: [ {(0.00128,0.84987,0.00128,0.00719),(0.00201,0.81487,0.00201,0.01101),(0.00249,0.79600,0.00249,0.01342),(0.00291,0.78130,0.00291,0.01547),(0.00330,0.76859,0.00330,0.01736),(0.00368,0.75698,0.00368,0.01919),(0.00407,0.74597,0.00407,0.02101),(0.00448,0.73524,0.00448,0.02287),(0.00491,0.72451,0.00491,0.02482),(0.00537,0.71353,0.00537,0.02689),(0.00589,0.70201,0.00589,0.02916),(0.00649,0.68955,0.00649,0.03172),(0.00721,0.67553,0.00721,0.03474),(0.00814,0.65877,0.00814,0.03853),(0.00951,0.63633,0.00951,0.04393),(0.01287,0.58971,0.01287,0.05630)} {(0.00046,0.00008,0.77847,0.00008),(0.00070,0.00013,0.72804,0.00013),(0.00086,0.00016,0.70108,0.00016),(0.00099,0.00018,0.68018,0.00018),(0.00111,0.00021,0.66219,0.00021),(0.00123,0.00023,0.64584,0.00023),(0.00135,0.00025,0.63040,0.00025),(0.00147,0.00028,0.61540,0.00028),(0.00160,0.00031,0.60047,0.00031),(0.00174,0.00034,0.58526,0.00034),(0.00189,0.00037,0.56937,0.00037),(0.00206,0.00041,0.55227,0.00041),(0.00226,0.00045,0.53315,0.00045),(0.00251,0.00051,0.51046,0.00051),(0.00287,0.00059,0.48037,0.00059),(0.00370,0.00080,0.41903,0.00080)} {(0.01653,0.00114,0.00115,0.02357),(0.02032,0.00176,0.00178,0.02860),(0.02235,0.00217,0.00219,0.03122),(0.02393,0.00251,0.00254,0.03322),(0.02528,0.00284,0.00287,0.03492),(0.02652,0.00315,0.00320,0.03645),(0.02768,0.00347,0.00352,0.03787),(0.02882,0.00380,0.00385,0.03924),(0.02994,0.00414,0.00420,0.04058),(0.03109,0.00451,0.00458,0.04193),(0.03229,0.00492,0.00500,0.04332),(0.03358,0.00538,0.00548,0.04479),(0.03503,0.00593,0.00605,0.04640),(0.03674,0.00664,0.00678,0.04827),(0.03901,0.00766,0.00783,0.05067),(0.04362,0.01009,0.01035,0.05524)} {(0.00128,0.84987,0.00128,0.00719),(0.00201,0.81487,0.00201,0.01101),(0.00249,0.79600,0.00249,0.01342),(0.00291,0.78130,0.00291,0.01547),(0.00330,0.76859,0.00330,0.01736),(0.00368,0.75698,0.00368,0.01919),(0.00407,0.74597,0.00407,0.02101),(0.00448,0.73524,0.00448,0.02287),(0.00491,0.72451,0.00491,0.02482),(0.00537,0.71353,0.00537,0.02689),(0.00589,0.70201,0.00589,0.02916),(0.00649,0.68955,0.00649,0.03172),(0.00721,0.67553,0.00721,0.03474),(0.00814,0.65877,0.00814,0.03853),(0.00951,0.63633,0.00951,0.04393),(0.01287,0.58971,0.01287,0.05630)} {(0.00032,0.00180,0.00032,0.77352),(0.00050,0.00275,0.00050,0.72291),(0.00062,0.00335,0.00062,0.69602),(0.00073,0.00387,0.00073,0.67524),(0.00082,0.00434,0.00082,0.65742),(0.00092,0.00480,0.00092,0.64125),(0.00102,0.00525,0.00102,0.62602),(0.00112,0.00572,0.00112,0.61127),(0.00123,0.00620,0.00123,0.59663),(0.00134,0.00672,0.00134,0.58174),(0.00147,0.00729,0.00147,0.56623),(0.00162,0.00793,0.00162,0.54958),(0.00180,0.00868,0.00180,0.53102),(0.00203,0.00963,0.00203,0.50908),(0.00238,0.01098,0.00238,0.48013),(0.00322,0.01408,0.00322,0.42157)} {(0.00032,0.00180,0.00032,0.77352),(0.00050,0.00275,0.00050,0.72291),(0.00062,0.00335,0.00062,0.69602),(0.00073,0.00387,0.00073,0.67524),(0.00082,0.00434,0.00082,0.65742),(0.00092,0.00480,0.00092,0.64125),(0.00102,0.00525,0.00102,0.62602),(0.00112,0.00572,0.00112,0.61127),(0.00123,0.00620,0.00123,0.59663),(0.00134,0.00672,0.00134,0.58174),(0.00147,0.00729,0.00147,0.56623),(0.00162,0.00793,0.00162,0.54958),(0.00180,0.00868,0.00180,0.53102),(0.00203,0.00963,0.00203,0.50908),(0.00238,0.01098,0.00238,0.48013),(0.00322,0.01408,0.00322,0.42157)} {(0.00046,0.00008,0.77847,0.00008),(0.00070,0.00013,0.72804,0.00013),(0.00086,0.00016,0.70108,0.00016),(0.00099,0.00018,0.68018,0.00018),(0.00111,0.00021,0.66219,0.00021),(0.00123,0.00023,0.64584,0.00023),(0.00135,0.00025,0.63040,0.00025),(0.00147,0.00028,0.61540,0.00028),(0.00160,0.00031,0.60047,0.00031),(0.00174,0.00034,0.58526,0.00034),(0.00189,0.00037,0.56937,0.00037),(0.00206,0.00041,0.55227,0.00041),(0.00226,0.00045,0.53315,0.00045),(0.00251,0.00051,0.51046,0.00051),(0.00287,0.00059,0.48037,0.00059),(0.00370,0.00080,0.41903,0.00080)} {(0.00128,0.84987,0.00128,0.00719),(0.00201,0.81487,0.00201,0.01101),(0.00249,0.79600,0.00249,0.01342),(0.00291,0.78130,0.00291,0.01547),(0.00330,0.76859,0.00330,0.01736),(0.00368,0.75698,0.00368,0.01919),(0.00407,0.74597,0.00407,0.02101),(0.00448,0.73524,0.00448,0.02287),(0.00491,0.72451,0.00491,0.02482),(0.00537,0.71353,0.00537,0.02689),(0.00589,0.70201,0.00589,0.02916),(0.00649,0.68955,0.00649,0.03172),(0.00721,0.67553,0.00721,0.03474),(0.00814,0.65877,0.00814,0.03853),(0.00951,0.63633,0.00951,0.04393),(0.01287,0.58971,0.01287,0.05630)} {(0.03305,0.02471,0.00229,0.00227),(0.04064,0.03036,0.00356,0.00353),(0.04470,0.03339,0.00438,0.00433),(0.04785,0.03574,0.00509,0.00503),(0.05056,0.03776,0.00575,0.00567),(0.05303,0.03960,0.00639,0.00631),(0.05537,0.04134,0.00704,0.00694),(0.05763,0.04303,0.00771,0.00759),(0.05989,0.04472,0.00841,0.00828),(0.06218,0.04644,0.00916,0.00901),(0.06459,0.04823,0.01000,0.00983),(0.06717,0.05017,0.01096,0.01076),(0.07006,0.05234,0.01210,0.01187),(0.07348,0.05491,0.01355,0.01328),(0.07802,0.05833,0.01566,0.01533),(0.08723,0.06533,0.02070,0.02019)} {(0.85570,0.00072,0.00411,0.00072),(0.82127,0.00113,0.00632,0.00113),(0.80259,0.00140,0.00772,0.00140),(0.78796,0.00163,0.00891,0.00163),(0.77526,0.00186,0.01002,0.00186),(0.76363,0.00207,0.01109,0.00207),(0.75256,0.00229,0.01216,0.00229),(0.74174,0.00252,0.01326,0.00252),(0.73088,0.00276,0.01441,0.00276),(0.71974,0.00302,0.01563,0.00302),(0.70801,0.00331,0.01698,0.00331),(0.69527,0.00365,0.01850,0.00365),(0.68088,0.00405,0.02030,0.00405),(0.66360,0.00458,0.02257,0.00458),(0.64031,0.00535,0.02581,0.00535),(0.59137,0.00724,0.03331,0.00724)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.85570,0.00072,0.00411,0.00072),(0.82127,0.00113,0.00632,0.00113),(0.80259,0.00140,0.00772,0.00140),(0.78796,0.00163,0.00891,0.00163),(0.77526,0.00186,0.01002,0.00186),(0.76363,0.00207,0.01109,0.00207),(0.75256,0.00229,0.01216,0.00229),(0.74174,0.00252,0.01326,0.00252),(0.73088,0.00276,0.01441,0.00276),(0.71974,0.00302,0.01563,0.00302),(0.70801,0.00331,0.01698,0.00331),(0.69527,0.00365,0.01850,0.00365),(0.68088,0.00405,0.02030,0.00405),(0.66360,0.00458,0.02257,0.00458),(0.64031,0.00535,0.02581,0.00535),(0.59137,0.00724,0.03331,0.00724)} {(0.00032,0.00180,0.00032,0.77352),(0.00050,0.00275,0.00050,0.72291),(0.00062,0.00335,0.00062,0.69602),(0.00073,0.00387,0.00073,0.67524),(0.00082,0.00434,0.00082,0.65742),(0.00092,0.00480,0.00092,0.64125),(0.00102,0.00525,0.00102,0.62602),(0.00112,0.00572,0.00112,0.61127),(0.00123,0.00620,0.00123,0.59663),(0.00134,0.00672,0.00134,0.58174),(0.00147,0.00729,0.00147,0.56623),(0.00162,0.00793,0.00162,0.54958),(0.00180,0.00868,0.00180,0.53102),(0.00203,0.00963,0.00203,0.50908),(0.00238,0.01098,0.00238,0.48013),(0.00322,0.01408,0.00322,0.42157)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00064,0.03907,0.00064,0.07455),(0.00101,0.04735,0.00101,0.08920),(0.00124,0.05167,0.00124,0.09663),(0.00145,0.05496,0.00145,0.10219),(0.00165,0.05776,0.00165,0.10683),(0.00184,0.06026,0.00184,0.11093),(0.00204,0.06260,0.00204,0.11470),(0.00224,0.06484,0.00224,0.11825),(0.00245,0.06705,0.00245,0.12168),(0.00269,0.06926,0.00269,0.12507),(0.00295,0.07154,0.00295,0.12850),(0.00324,0.07395,0.00324,0.13204),(0.00360,0.07659,0.00360,0.13582),(0.00407,0.07966,0.00407,0.14006),(0.00475,0.08359,0.00475,0.14523),(0.00643,0.09111,0.00643,0.15406)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.85570,0.00072,0.00411,0.00072),(0.82127,0.00113,0.00632,0.00113),(0.80259,0.00140,0.00772,0.00140),(0.78796,0.00163,0.00891,0.00163),(0.77526,0.00186,0.01002,0.00186),(0.76363,0.00207,0.01109,0.00207),(0.75256,0.00229,0.01216,0.00229),(0.74174,0.00252,0.01326,0.00252),(0.73088,0.00276,0.01441,0.00276),(0.71974,0.00302,0.01563,0.00302),(0.70801,0.00331,0.01698,0.00331),(0.69527,0.00365,0.01850,0.00365),(0.68088,0.00405,0.02030,0.00405),(0.66360,0.00458,0.02257,0.00458),(0.64031,0.00535,0.02581,0.00535),(0.59137,0.00724,0.03331,0.00724)} {(0.85570,0.00072,0.00411,0.00072),(0.82127,0.00113,0.00632,0.00113),(0.80259,0.00140,0.00772,0.00140),(0.78796,0.00163,0.00891,0.00163),(0.77526,0.00186,0.01002,0.00186),(0.76363,0.00207,0.01109,0.00207),(0.75256,0.00229,0.01216,0.00229),(0.74174,0.00252,0.01326,0.00252),(0.73088,0.00276,0.01441,0.00276),(0.71974,0.00302,0.01563,0.00302),(0.70801,0.00331,0.01698,0.00331),(0.69527,0.00365,0.01850,0.00365),(0.68088,0.00405,0.02030,0.00405),(0.66360,0.00458,0.02257,0.00458),(0.64031,0.00535,0.02581,0.00535),(0.59137,0.00724,0.03331,0.00724)} {(0.00046,0.00008,0.77847,0.00008),(0.00070,0.00013,0.72804,0.00013),(0.00086,0.00016,0.70108,0.00016),(0.00099,0.00018,0.68018,0.00018),(0.00111,0.00021,0.66219,0.00021),(0.00123,0.00023,0.64584,0.00023),(0.00135,0.00025,0.63040,0.00025),(0.00147,0.00028,0.61540,0.00028),(0.00160,0.00031,0.60047,0.00031),(0.00174,0.00034,0.58526,0.00034),(0.00189,0.00037,0.56937,0.00037),(0.00206,0.00041,0.55227,0.00041),(0.00226,0.00045,0.53315,0.00045),(0.00251,0.00051,0.51046,0.00051),(0.00287,0.00059,0.48037,0.00059),(0.00370,0.00080,0.41903,0.00080)} ] - TEST alpha(ncats) = 50.00(16) + TEST alpha(ncats) = 50.00(16), mode = MEAN + +0.753910 0.819477 0.858213 0.888396 0.914442 0.938225 0.960788 0.982835 1.004938 1.027653 1.051623 1.077721 1.107331 1.143076 1.191366 1.280007 +[7] P-matrix for branch length 0.100000 ++0.9406 +0.0282 +0.0170 +0.0141 ++0.0212 +0.9379 +0.0071 +0.0339 ++0.0511 +0.0282 +0.9065 +0.0141 ++0.0212 +0.0677 +0.0071 +0.9040 + ++0.9357 +0.0306 +0.0184 +0.0153 ++0.0229 +0.9328 +0.0076 +0.0366 ++0.0552 +0.0306 +0.8989 +0.0153 ++0.0229 +0.0731 +0.0076 +0.8963 + ++0.9328 +0.0320 +0.0192 +0.0160 ++0.0240 +0.9299 +0.0080 +0.0381 ++0.0576 +0.0320 +0.8944 +0.0160 ++0.0240 +0.0763 +0.0080 +0.8917 + ++0.9306 +0.0331 +0.0198 +0.0165 ++0.0248 +0.9276 +0.0083 +0.0394 ++0.0595 +0.0331 +0.8909 +0.0165 ++0.0248 +0.0787 +0.0083 +0.8882 + ++0.9287 +0.0340 +0.0204 +0.0170 ++0.0255 +0.9256 +0.0085 +0.0404 ++0.0611 +0.0340 +0.8879 +0.0170 ++0.0255 +0.0808 +0.0085 +0.8852 + ++0.9269 +0.0348 +0.0208 +0.0174 ++0.0261 +0.9238 +0.0087 +0.0414 ++0.0625 +0.0348 +0.8852 +0.0174 ++0.0261 +0.0827 +0.0087 +0.8824 + ++0.9253 +0.0356 +0.0213 +0.0178 ++0.0267 +0.9221 +0.0089 +0.0423 ++0.0639 +0.0356 +0.8827 +0.0178 ++0.0267 +0.0845 +0.0089 +0.8798 + ++0.9236 +0.0364 +0.0217 +0.0182 ++0.0273 +0.9205 +0.0091 +0.0431 ++0.0652 +0.0364 +0.8802 +0.0182 ++0.0273 +0.0863 +0.0091 +0.8773 + ++0.9220 +0.0372 +0.0222 +0.0186 ++0.0279 +0.9188 +0.0093 +0.0440 ++0.0666 +0.0372 +0.8777 +0.0186 ++0.0279 +0.0880 +0.0093 +0.8748 + ++0.9204 +0.0380 +0.0226 +0.0190 ++0.0285 +0.9171 +0.0095 +0.0449 ++0.0679 +0.0380 +0.8751 +0.0190 ++0.0285 +0.0898 +0.0095 +0.8722 + ++0.9186 +0.0388 +0.0231 +0.0194 ++0.0291 +0.9153 +0.0097 +0.0458 ++0.0694 +0.0388 +0.8724 +0.0194 ++0.0291 +0.0917 +0.0097 +0.8695 + ++0.9168 +0.0397 +0.0236 +0.0199 ++0.0298 +0.9134 +0.0099 +0.0469 ++0.0709 +0.0397 +0.8695 +0.0199 ++0.0298 +0.0937 +0.0099 +0.8666 + ++0.9146 +0.0408 +0.0242 +0.0204 ++0.0306 +0.9112 +0.0102 +0.0480 ++0.0727 +0.0408 +0.8662 +0.0204 ++0.0306 +0.0960 +0.0102 +0.8632 + ++0.9121 +0.0420 +0.0249 +0.0210 ++0.0315 +0.9086 +0.0105 +0.0494 ++0.0748 +0.0420 +0.8622 +0.0210 ++0.0315 +0.0987 +0.0105 +0.8593 + ++0.9086 +0.0437 +0.0259 +0.0218 ++0.0328 +0.9051 +0.0109 +0.0512 ++0.0776 +0.0437 +0.8569 +0.0218 ++0.0328 +0.1024 +0.0109 +0.8539 + ++0.9023 +0.0467 +0.0275 +0.0234 ++0.0351 +0.8987 +0.0117 +0.0545 ++0.0826 +0.0467 +0.8472 +0.0234 ++0.0351 +0.1090 +0.0117 +0.8442 + + +[7] P-matrix for branch length 0.200000 ++0.8865 +0.0545 +0.0318 +0.0272 ++0.0409 +0.8827 +0.0136 +0.0628 ++0.0953 +0.0545 +0.8230 +0.0272 ++0.0409 +0.1256 +0.0136 +0.8200 + ++0.8776 +0.0588 +0.0341 +0.0294 ++0.0441 +0.8738 +0.0147 +0.0674 ++0.1024 +0.0588 +0.8094 +0.0294 ++0.0441 +0.1347 +0.0147 +0.8064 + ++0.8724 +0.0614 +0.0355 +0.0307 ++0.0460 +0.8686 +0.0153 +0.0700 ++0.1065 +0.0614 +0.8014 +0.0307 ++0.0460 +0.1400 +0.0153 +0.7986 + ++0.8684 +0.0634 +0.0365 +0.0317 ++0.0475 +0.8646 +0.0158 +0.0720 ++0.1096 +0.0634 +0.7953 +0.0317 ++0.0475 +0.1441 +0.0158 +0.7926 + ++0.8650 +0.0651 +0.0374 +0.0325 ++0.0488 +0.8612 +0.0163 +0.0738 ++0.1123 +0.0651 +0.7901 +0.0325 ++0.0488 +0.1475 +0.0163 +0.7874 + ++0.8618 +0.0666 +0.0382 +0.0333 ++0.0500 +0.8581 +0.0167 +0.0753 ++0.1147 +0.0666 +0.7854 +0.0333 ++0.0500 +0.1506 +0.0167 +0.7827 + ++0.8589 +0.0681 +0.0390 +0.0340 ++0.0511 +0.8551 +0.0170 +0.0768 ++0.1170 +0.0681 +0.7809 +0.0340 ++0.0511 +0.1536 +0.0170 +0.7783 + ++0.8560 +0.0695 +0.0397 +0.0347 ++0.0521 +0.8523 +0.0174 +0.0782 ++0.1192 +0.0695 +0.7766 +0.0347 ++0.0521 +0.1564 +0.0174 +0.7741 + ++0.8532 +0.0709 +0.0405 +0.0355 ++0.0532 +0.8495 +0.0177 +0.0796 ++0.1214 +0.0709 +0.7723 +0.0355 ++0.0532 +0.1593 +0.0177 +0.7698 + ++0.8503 +0.0724 +0.0412 +0.0362 ++0.0543 +0.8466 +0.0181 +0.0811 ++0.1236 +0.0724 +0.7679 +0.0362 ++0.0543 +0.1621 +0.0181 +0.7655 + ++0.8472 +0.0739 +0.0420 +0.0369 ++0.0554 +0.8436 +0.0185 +0.0826 ++0.1259 +0.0739 +0.7633 +0.0369 ++0.0554 +0.1651 +0.0185 +0.7610 + ++0.8439 +0.0755 +0.0428 +0.0378 ++0.0566 +0.8403 +0.0189 +0.0842 ++0.1284 +0.0755 +0.7583 +0.0378 ++0.0566 +0.1684 +0.0189 +0.7561 + ++0.8402 +0.0774 +0.0438 +0.0387 ++0.0580 +0.8366 +0.0193 +0.0860 ++0.1313 +0.0774 +0.7527 +0.0387 ++0.0580 +0.1720 +0.0193 +0.7506 + ++0.8357 +0.0796 +0.0449 +0.0398 ++0.0597 +0.8322 +0.0199 +0.0882 ++0.1346 +0.0796 +0.7460 +0.0398 ++0.0597 +0.1763 +0.0199 +0.7441 + ++0.8297 +0.0826 +0.0464 +0.0413 ++0.0620 +0.8264 +0.0207 +0.0910 ++0.1391 +0.0826 +0.7370 +0.0413 ++0.0620 +0.1820 +0.0207 +0.7354 + ++0.8189 +0.0880 +0.0490 +0.0440 ++0.0660 +0.8159 +0.0220 +0.0961 ++0.1471 +0.0880 +0.7209 +0.0440 ++0.0660 +0.1922 +0.0220 +0.7197 + + +[7] P-matrix for branch length 1.000000 ++0.5939 +0.2076 +0.0946 +0.1038 ++0.1557 +0.6112 +0.0519 +0.1812 ++0.2839 +0.2076 +0.4047 +0.1038 ++0.1557 +0.3623 +0.0519 +0.4301 + ++0.5731 +0.2195 +0.0977 +0.1097 ++0.1646 +0.5939 +0.0549 +0.1867 ++0.2931 +0.2195 +0.3777 +0.1097 ++0.1646 +0.3733 +0.0549 +0.4072 + ++0.5615 +0.2261 +0.0993 +0.1131 ++0.1696 +0.5844 +0.0565 +0.1895 ++0.2979 +0.2261 +0.3629 +0.1131 ++0.1696 +0.3790 +0.0565 +0.3948 + ++0.5528 +0.2312 +0.1004 +0.1156 ++0.1734 +0.5773 +0.0578 +0.1915 ++0.3013 +0.2312 +0.3520 +0.1156 ++0.1734 +0.3831 +0.0578 +0.3858 + ++0.5456 +0.2354 +0.1013 +0.1177 ++0.1765 +0.5715 +0.0588 +0.1932 ++0.3040 +0.2354 +0.3429 +0.1177 ++0.1765 +0.3863 +0.0588 +0.3783 + ++0.5392 +0.2391 +0.1021 +0.1196 ++0.1794 +0.5663 +0.0598 +0.1946 ++0.3063 +0.2391 +0.3349 +0.1196 ++0.1794 +0.3891 +0.0598 +0.3717 + ++0.5333 +0.2426 +0.1028 +0.1213 ++0.1820 +0.5616 +0.0607 +0.1958 ++0.3084 +0.2426 +0.3276 +0.1213 ++0.1820 +0.3916 +0.0607 +0.3658 + ++0.5276 +0.2460 +0.1035 +0.1230 ++0.1845 +0.5571 +0.0615 +0.1970 ++0.3104 +0.2460 +0.3207 +0.1230 ++0.1845 +0.3939 +0.0615 +0.3601 + ++0.5221 +0.2492 +0.1041 +0.1246 ++0.1869 +0.5527 +0.0623 +0.1980 ++0.3122 +0.2492 +0.3140 +0.1246 ++0.1869 +0.3961 +0.0623 +0.3547 + ++0.5166 +0.2525 +0.1046 +0.1263 ++0.1894 +0.5484 +0.0631 +0.1991 ++0.3139 +0.2525 +0.3073 +0.1263 ++0.1894 +0.3982 +0.0631 +0.3493 + ++0.5109 +0.2559 +0.1052 +0.1280 ++0.1919 +0.5440 +0.0640 +0.2001 ++0.3157 +0.2559 +0.3005 +0.1280 ++0.1919 +0.4002 +0.0640 +0.3438 + ++0.5049 +0.2595 +0.1058 +0.1298 ++0.1946 +0.5393 +0.0649 +0.2012 ++0.3174 +0.2595 +0.2933 +0.1298 ++0.1946 +0.4023 +0.0649 +0.3381 + ++0.4983 +0.2635 +0.1064 +0.1317 ++0.1976 +0.5342 +0.0659 +0.2023 ++0.3193 +0.2635 +0.2855 +0.1317 ++0.1976 +0.4045 +0.0659 +0.3320 + ++0.4907 +0.2681 +0.1071 +0.1341 ++0.2011 +0.5284 +0.0670 +0.2035 ++0.3213 +0.2681 +0.2765 +0.1341 ++0.2011 +0.4070 +0.0670 +0.3249 + ++0.4808 +0.2742 +0.1079 +0.1371 ++0.2056 +0.5209 +0.0685 +0.2049 ++0.3237 +0.2742 +0.2650 +0.1371 ++0.2056 +0.4098 +0.0685 +0.3160 + ++0.4641 +0.2846 +0.1091 +0.1423 ++0.2134 +0.5084 +0.0711 +0.2070 ++0.3272 +0.2846 +0.2460 +0.1423 ++0.2134 +0.4141 +0.0711 +0.3014 + + +[7] P-matrix for branch length 1.000000 ++0.5939 +0.2076 +0.0946 +0.1038 ++0.1557 +0.6112 +0.0519 +0.1812 ++0.2839 +0.2076 +0.4047 +0.1038 ++0.1557 +0.3623 +0.0519 +0.4301 + ++0.5731 +0.2195 +0.0977 +0.1097 ++0.1646 +0.5939 +0.0549 +0.1867 ++0.2931 +0.2195 +0.3777 +0.1097 ++0.1646 +0.3733 +0.0549 +0.4072 + ++0.5615 +0.2261 +0.0993 +0.1131 ++0.1696 +0.5844 +0.0565 +0.1895 ++0.2979 +0.2261 +0.3629 +0.1131 ++0.1696 +0.3790 +0.0565 +0.3948 + ++0.5528 +0.2312 +0.1004 +0.1156 ++0.1734 +0.5773 +0.0578 +0.1915 ++0.3013 +0.2312 +0.3520 +0.1156 ++0.1734 +0.3831 +0.0578 +0.3858 + ++0.5456 +0.2354 +0.1013 +0.1177 ++0.1765 +0.5715 +0.0588 +0.1932 ++0.3040 +0.2354 +0.3429 +0.1177 ++0.1765 +0.3863 +0.0588 +0.3783 + ++0.5392 +0.2391 +0.1021 +0.1196 ++0.1794 +0.5663 +0.0598 +0.1946 ++0.3063 +0.2391 +0.3349 +0.1196 ++0.1794 +0.3891 +0.0598 +0.3717 + ++0.5333 +0.2426 +0.1028 +0.1213 ++0.1820 +0.5616 +0.0607 +0.1958 ++0.3084 +0.2426 +0.3276 +0.1213 ++0.1820 +0.3916 +0.0607 +0.3658 + ++0.5276 +0.2460 +0.1035 +0.1230 ++0.1845 +0.5571 +0.0615 +0.1970 ++0.3104 +0.2460 +0.3207 +0.1230 ++0.1845 +0.3939 +0.0615 +0.3601 + ++0.5221 +0.2492 +0.1041 +0.1246 ++0.1869 +0.5527 +0.0623 +0.1980 ++0.3122 +0.2492 +0.3140 +0.1246 ++0.1869 +0.3961 +0.0623 +0.3547 + ++0.5166 +0.2525 +0.1046 +0.1263 ++0.1894 +0.5484 +0.0631 +0.1991 ++0.3139 +0.2525 +0.3073 +0.1263 ++0.1894 +0.3982 +0.0631 +0.3493 + ++0.5109 +0.2559 +0.1052 +0.1280 ++0.1919 +0.5440 +0.0640 +0.2001 ++0.3157 +0.2559 +0.3005 +0.1280 ++0.1919 +0.4002 +0.0640 +0.3438 + ++0.5049 +0.2595 +0.1058 +0.1298 ++0.1946 +0.5393 +0.0649 +0.2012 ++0.3174 +0.2595 +0.2933 +0.1298 ++0.1946 +0.4023 +0.0649 +0.3381 + ++0.4983 +0.2635 +0.1064 +0.1317 ++0.1976 +0.5342 +0.0659 +0.2023 ++0.3193 +0.2635 +0.2855 +0.1317 ++0.1976 +0.4045 +0.0659 +0.3320 + ++0.4907 +0.2681 +0.1071 +0.1341 ++0.2011 +0.5284 +0.0670 +0.2035 ++0.3213 +0.2681 +0.2765 +0.1341 ++0.2011 +0.4070 +0.0670 +0.3249 + ++0.4808 +0.2742 +0.1079 +0.1371 ++0.2056 +0.5209 +0.0685 +0.2049 ++0.3237 +0.2742 +0.2650 +0.1371 ++0.2056 +0.4098 +0.0685 +0.3160 + ++0.4641 +0.2846 +0.1091 +0.1423 ++0.2134 +0.5084 +0.0711 +0.2070 ++0.3272 +0.2846 +0.2460 +0.1423 ++0.2134 +0.4141 +0.0711 +0.3014 + + +[7] CLV 5: [ {(0.04977,0.09148,0.00668,0.10808),(0.05337,0.09742,0.00776,0.11458),(0.05545,0.10080,0.00842,0.11825),(0.05705,0.10337,0.00895,0.12102),(0.05841,0.10555,0.00942,0.12336),(0.05963,0.10750,0.00986,0.12544),(0.06079,0.10933,0.01028,0.12738),(0.06190,0.11108,0.01070,0.12924),(0.06301,0.11282,0.01112,0.13107),(0.06414,0.11457,0.01156,0.13291),(0.06532,0.11639,0.01203,0.13481),(0.06659,0.11834,0.01255,0.13684),(0.06801,0.12050,0.01315,0.13908),(0.06971,0.12306,0.01389,0.14171),(0.07196,0.12641,0.01490,0.14514),(0.07596,0.13228,0.01682,0.15106)} {(0.78591,0.00167,0.00909,0.00167),(0.77020,0.00195,0.01048,0.00195),(0.76111,0.00212,0.01133,0.00212),(0.75412,0.00226,0.01201,0.00226),(0.74816,0.00238,0.01260,0.00238),(0.74277,0.00250,0.01315,0.00250),(0.73770,0.00261,0.01368,0.00261),(0.73280,0.00272,0.01420,0.00272),(0.72792,0.00283,0.01473,0.00283),(0.72295,0.00295,0.01527,0.00295),(0.71776,0.00307,0.01586,0.00307),(0.71216,0.00321,0.01650,0.00321),(0.70588,0.00337,0.01723,0.00337),(0.69839,0.00357,0.01812,0.00357),(0.68844,0.00384,0.01934,0.00384),(0.67066,0.00436,0.02163,0.00436)} {(0.04829,0.03606,0.00519,0.00513),(0.05164,0.03856,0.00602,0.00595),(0.05357,0.04000,0.00654,0.00645),(0.05504,0.04110,0.00695,0.00685),(0.05629,0.04203,0.00731,0.00720),(0.05742,0.04287,0.00764,0.00753),(0.05847,0.04366,0.00796,0.00784),(0.05949,0.04442,0.00828,0.00815),(0.06050,0.04518,0.00861,0.00847),(0.06152,0.04594,0.00894,0.00880),(0.06259,0.04674,0.00930,0.00915),(0.06374,0.04760,0.00970,0.00954),(0.06502,0.04856,0.01016,0.00998),(0.06654,0.04970,0.01072,0.01053),(0.06854,0.05120,0.01149,0.01128),(0.07209,0.05386,0.01295,0.01269)} {(0.00297,0.77925,0.00297,0.01577),(0.00346,0.76353,0.00346,0.01815),(0.00377,0.75447,0.00377,0.01960),(0.00402,0.74752,0.00402,0.02075),(0.00423,0.74160,0.00423,0.02176),(0.00444,0.73626,0.00444,0.02269),(0.00463,0.73125,0.00463,0.02359),(0.00483,0.72640,0.00483,0.02447),(0.00503,0.72159,0.00503,0.02536),(0.00524,0.71670,0.00524,0.02628),(0.00546,0.71159,0.00546,0.02727),(0.00570,0.70609,0.00570,0.02835),(0.00599,0.69993,0.00599,0.02958),(0.00634,0.69260,0.00634,0.03108),(0.00682,0.68289,0.00682,0.03314),(0.00775,0.66561,0.00775,0.03696)} {(0.02415,0.00256,0.00260,0.03350),(0.02582,0.00297,0.00301,0.03559),(0.02678,0.00322,0.00327,0.03678),(0.02752,0.00342,0.00347,0.03767),(0.02814,0.00360,0.00365,0.03843),(0.02871,0.00376,0.00382,0.03911),(0.02924,0.00392,0.00398,0.03974),(0.02974,0.00408,0.00414,0.04035),(0.03025,0.00423,0.00430,0.04094),(0.03076,0.00440,0.00447,0.04154),(0.03130,0.00457,0.00465,0.04217),(0.03187,0.00477,0.00485,0.04283),(0.03251,0.00499,0.00508,0.04357),(0.03327,0.00526,0.00536,0.04443),(0.03427,0.00564,0.00574,0.04556),(0.03604,0.00635,0.00647,0.04752)} {(0.00148,0.05542,0.00148,0.10295),(0.00173,0.05885,0.00173,0.10864),(0.00188,0.06080,0.00188,0.11180),(0.00201,0.06228,0.00201,0.11417),(0.00212,0.06352,0.00212,0.11616),(0.00222,0.06463,0.00222,0.11792),(0.00232,0.06567,0.00232,0.11954),(0.00241,0.06666,0.00241,0.12109),(0.00251,0.06764,0.00251,0.12260),(0.00262,0.06863,0.00262,0.12411),(0.00273,0.06965,0.00273,0.12566),(0.00285,0.07074,0.00285,0.12730),(0.00299,0.07194,0.00299,0.12910),(0.00317,0.07336,0.00317,0.13119),(0.00341,0.07521,0.00341,0.13386),(0.00387,0.07842,0.00387,0.13836)} {(0.00101,0.00019,0.67727,0.00019),(0.00116,0.00022,0.65506,0.00022),(0.00126,0.00024,0.64231,0.00024),(0.00133,0.00025,0.63256,0.00025),(0.00140,0.00026,0.62428,0.00026),(0.00146,0.00028,0.61682,0.00028),(0.00152,0.00029,0.60984,0.00029),(0.00158,0.00030,0.60309,0.00030),(0.00164,0.00031,0.59641,0.00031),(0.00170,0.00033,0.58963,0.00033),(0.00176,0.00034,0.58257,0.00034),(0.00183,0.00036,0.57498,0.00036),(0.00191,0.00037,0.56650,0.00037),(0.00201,0.00040,0.55645,0.00040),(0.00215,0.00043,0.54317,0.00043),(0.00240,0.00048,0.51970,0.00048)} {(0.00297,0.77925,0.00297,0.01577),(0.00346,0.76353,0.00346,0.01815),(0.00377,0.75447,0.00377,0.01960),(0.00402,0.74752,0.00402,0.02075),(0.00423,0.74160,0.00423,0.02176),(0.00444,0.73626,0.00444,0.02269),(0.00463,0.73125,0.00463,0.02359),(0.00483,0.72640,0.00483,0.02447),(0.00503,0.72159,0.00503,0.02536),(0.00524,0.71670,0.00524,0.02628),(0.00546,0.71159,0.00546,0.02727),(0.00570,0.70609,0.00570,0.02835),(0.00599,0.69993,0.00599,0.02958),(0.00634,0.69260,0.00634,0.03108),(0.00682,0.68289,0.00682,0.03314),(0.00775,0.66561,0.00775,0.03696)} {(0.00074,0.00394,0.00074,0.67235),(0.00087,0.00454,0.00087,0.65036),(0.00094,0.00490,0.00094,0.63777),(0.00100,0.00519,0.00100,0.62816),(0.00106,0.00544,0.00106,0.62001),(0.00111,0.00567,0.00111,0.61267),(0.00116,0.00590,0.00116,0.60581),(0.00121,0.00612,0.00121,0.59920),(0.00126,0.00634,0.00126,0.59265),(0.00131,0.00657,0.00131,0.58602),(0.00136,0.00682,0.00136,0.57911),(0.00143,0.00709,0.00143,0.57170),(0.00150,0.00740,0.00150,0.56343),(0.00158,0.00777,0.00158,0.55364),(0.00171,0.00828,0.00171,0.54075),(0.00194,0.00924,0.00194,0.51801)} {(0.78591,0.00167,0.00909,0.00167),(0.77020,0.00195,0.01048,0.00195),(0.76111,0.00212,0.01133,0.00212),(0.75412,0.00226,0.01201,0.00226),(0.74816,0.00238,0.01260,0.00238),(0.74277,0.00250,0.01315,0.00250),(0.73770,0.00261,0.01368,0.00261),(0.73280,0.00272,0.01420,0.00272),(0.72792,0.00283,0.01473,0.00283),(0.72295,0.00295,0.01527,0.00295),(0.71776,0.00307,0.01586,0.00307),(0.71216,0.00321,0.01650,0.00321),(0.70588,0.00337,0.01723,0.00337),(0.69839,0.00357,0.01812,0.00357),(0.68844,0.00384,0.01934,0.00384),(0.67066,0.00436,0.02163,0.00436)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} 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{(0.00101,0.00019,0.67727,0.00019),(0.00116,0.00022,0.65506,0.00022),(0.00126,0.00024,0.64231,0.00024),(0.00133,0.00025,0.63256,0.00025),(0.00140,0.00026,0.62428,0.00026),(0.00146,0.00028,0.61682,0.00028),(0.00152,0.00029,0.60984,0.00029),(0.00158,0.00030,0.60309,0.00030),(0.00164,0.00031,0.59641,0.00031),(0.00170,0.00033,0.58963,0.00033),(0.00176,0.00034,0.58257,0.00034),(0.00183,0.00036,0.57498,0.00036),(0.00191,0.00037,0.56650,0.00037),(0.00201,0.00040,0.55645,0.00040),(0.00215,0.00043,0.54317,0.00043),(0.00240,0.00048,0.51970,0.00048)} ] + + + TEST alpha(ncats) = 50.00(16), mode = MEDIAN 0.742216 0.818161 0.857444 0.887779 0.913886 0.937699 0.960279 0.982339 1.004454 1.027184 1.051177 1.077317 1.107016 1.142983 1.192101 1.297965 [7] P-matrix for branch length 0.100000 @@ -5964,7 +11928,343 @@ [7] CLV 7: [ {(0.00288,0.78210,0.00288,0.01535),(0.00345,0.76384,0.00345,0.01810),(0.00376,0.75465,0.00376,0.01957),(0.00401,0.74766,0.00401,0.02073),(0.00423,0.74173,0.00423,0.02174),(0.00443,0.73638,0.00443,0.02267),(0.00463,0.73136,0.00463,0.02357),(0.00483,0.72651,0.00483,0.02445),(0.00502,0.72169,0.00502,0.02534),(0.00523,0.71680,0.00523,0.02627),(0.00545,0.71168,0.00545,0.02725),(0.00570,0.70617,0.00570,0.02833),(0.00599,0.69999,0.00599,0.02957),(0.00634,0.69262,0.00634,0.03108),(0.00683,0.68275,0.00683,0.03317),(0.00794,0.66220,0.00794,0.03774)} {(0.00098,0.00018,0.68131,0.00018),(0.00116,0.00022,0.65550,0.00022),(0.00126,0.00024,0.64256,0.00024),(0.00133,0.00025,0.63276,0.00025),(0.00140,0.00026,0.62446,0.00026),(0.00146,0.00028,0.61699,0.00028),(0.00152,0.00029,0.60999,0.00029),(0.00158,0.00030,0.60324,0.00030),(0.00164,0.00031,0.59656,0.00031),(0.00170,0.00033,0.58977,0.00033),(0.00176,0.00034,0.58270,0.00034),(0.00183,0.00036,0.57510,0.00036),(0.00191,0.00037,0.56659,0.00037),(0.00201,0.00040,0.55647,0.00040),(0.00215,0.00043,0.54297,0.00043),(0.00245,0.00050,0.51508,0.00050)} {(0.02384,0.00249,0.00252,0.03311),(0.02579,0.00296,0.00300,0.03555),(0.02676,0.00322,0.00326,0.03675),(0.02750,0.00342,0.00347,0.03766),(0.02813,0.00360,0.00365,0.03842),(0.02870,0.00376,0.00382,0.03909),(0.02922,0.00392,0.00398,0.03973),(0.02973,0.00407,0.00414,0.04033),(0.03024,0.00423,0.00430,0.04093),(0.03075,0.00440,0.00447,0.04153),(0.03129,0.00457,0.00465,0.04215),(0.03186,0.00477,0.00485,0.04282),(0.03250,0.00499,0.00508,0.04356),(0.03327,0.00526,0.00536,0.04443),(0.03429,0.00564,0.00575,0.04558),(0.03639,0.00649,0.00662,0.04789)} {(0.00288,0.78210,0.00288,0.01535),(0.00345,0.76384,0.00345,0.01810),(0.00376,0.75465,0.00376,0.01957),(0.00401,0.74766,0.00401,0.02073),(0.00423,0.74173,0.00423,0.02174),(0.00443,0.73638,0.00443,0.02267),(0.00463,0.73136,0.00463,0.02357),(0.00483,0.72651,0.00483,0.02445),(0.00502,0.72169,0.00502,0.02534),(0.00523,0.71680,0.00523,0.02627),(0.00545,0.71168,0.00545,0.02725),(0.00570,0.70617,0.00570,0.02833),(0.00599,0.69999,0.00599,0.02957),(0.00634,0.69262,0.00634,0.03108),(0.00683,0.68275,0.00683,0.03317),(0.00794,0.66220,0.00794,0.03774)} {(0.00072,0.00384,0.00072,0.67636),(0.00086,0.00452,0.00086,0.65079),(0.00094,0.00489,0.00094,0.63802),(0.00100,0.00518,0.00100,0.62836),(0.00106,0.00543,0.00106,0.62018),(0.00111,0.00567,0.00111,0.61284),(0.00116,0.00589,0.00116,0.60597),(0.00121,0.00611,0.00121,0.59935),(0.00126,0.00634,0.00126,0.59279),(0.00131,0.00657,0.00131,0.58615),(0.00136,0.00681,0.00136,0.57924),(0.00143,0.00708,0.00143,0.57181),(0.00150,0.00739,0.00150,0.56352),(0.00158,0.00777,0.00158,0.55367),(0.00171,0.00829,0.00171,0.54055),(0.00199,0.00943,0.00199,0.51355)} {(0.00072,0.00384,0.00072,0.67636),(0.00086,0.00452,0.00086,0.65079),(0.00094,0.00489,0.00094,0.63802),(0.00100,0.00518,0.00100,0.62836),(0.00106,0.00543,0.00106,0.62018),(0.00111,0.00567,0.00111,0.61284),(0.00116,0.00589,0.00116,0.60597),(0.00121,0.00611,0.00121,0.59935),(0.00126,0.00634,0.00126,0.59279),(0.00131,0.00657,0.00131,0.58615),(0.00136,0.00681,0.00136,0.57924),(0.00143,0.00708,0.00143,0.57181),(0.00150,0.00739,0.00150,0.56352),(0.00158,0.00777,0.00158,0.55367),(0.00171,0.00829,0.00171,0.54055),(0.00199,0.00943,0.00199,0.51355)} {(0.00098,0.00018,0.68131,0.00018),(0.00116,0.00022,0.65550,0.00022),(0.00126,0.00024,0.64256,0.00024),(0.00133,0.00025,0.63276,0.00025),(0.00140,0.00026,0.62446,0.00026),(0.00146,0.00028,0.61699,0.00028),(0.00152,0.00029,0.60999,0.00029),(0.00158,0.00030,0.60324,0.00030),(0.00164,0.00031,0.59656,0.00031),(0.00170,0.00033,0.58977,0.00033),(0.00176,0.00034,0.58270,0.00034),(0.00183,0.00036,0.57510,0.00036),(0.00191,0.00037,0.56659,0.00037),(0.00201,0.00040,0.55647,0.00040),(0.00215,0.00043,0.54297,0.00043),(0.00245,0.00050,0.51508,0.00050)} {(0.00288,0.78210,0.00288,0.01535),(0.00345,0.76384,0.00345,0.01810),(0.00376,0.75465,0.00376,0.01957),(0.00401,0.74766,0.00401,0.02073),(0.00423,0.74173,0.00423,0.02174),(0.00443,0.73638,0.00443,0.02267),(0.00463,0.73136,0.00463,0.02357),(0.00483,0.72651,0.00483,0.02445),(0.00502,0.72169,0.00502,0.02534),(0.00523,0.71680,0.00523,0.02627),(0.00545,0.71168,0.00545,0.02725),(0.00570,0.70617,0.00570,0.02833),(0.00599,0.69999,0.00599,0.02957),(0.00634,0.69262,0.00634,0.03108),(0.00683,0.68275,0.00683,0.03317),(0.00794,0.66220,0.00794,0.03774)} {(0.04768,0.03561,0.00505,0.00499),(0.05158,0.03851,0.00601,0.00593),(0.05353,0.03997,0.00653,0.00644),(0.05501,0.04107,0.00694,0.00684),(0.05626,0.04201,0.00730,0.00719),(0.05739,0.04285,0.00763,0.00752),(0.05845,0.04364,0.00796,0.00783),(0.05947,0.04441,0.00827,0.00815),(0.06048,0.04516,0.00860,0.00846),(0.06150,0.04593,0.00894,0.00879),(0.06257,0.04673,0.00930,0.00914),(0.06372,0.04759,0.00969,0.00953),(0.06501,0.04855,0.01015,0.00998),(0.06653,0.04969,0.01072,0.01053),(0.06857,0.05122,0.01150,0.01129),(0.07279,0.05439,0.01325,0.01298)} {(0.78876,0.00162,0.00885,0.00162),(0.77051,0.00194,0.01045,0.00194),(0.76129,0.00212,0.01132,0.00212),(0.75426,0.00226,0.01200,0.00226),(0.74829,0.00238,0.01259,0.00238),(0.74289,0.00249,0.01314,0.00249),(0.73782,0.00260,0.01367,0.00260),(0.73291,0.00271,0.01419,0.00271),(0.72803,0.00283,0.01472,0.00283),(0.72306,0.00294,0.01526,0.00294),(0.71786,0.00307,0.01584,0.00307),(0.71225,0.00321,0.01649,0.00321),(0.70594,0.00337,0.01722,0.00337),(0.69841,0.00357,0.01812,0.00357),(0.68829,0.00384,0.01936,0.00384),(0.66714,0.00447,0.02209,0.00447)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.78876,0.00162,0.00885,0.00162),(0.77051,0.00194,0.01045,0.00194),(0.76129,0.00212,0.01132,0.00212),(0.75426,0.00226,0.01200,0.00226),(0.74829,0.00238,0.01259,0.00238),(0.74289,0.00249,0.01314,0.00249),(0.73782,0.00260,0.01367,0.00260),(0.73291,0.00271,0.01419,0.00271),(0.72803,0.00283,0.01472,0.00283),(0.72306,0.00294,0.01526,0.00294),(0.71786,0.00307,0.01584,0.00307),(0.71225,0.00321,0.01649,0.00321),(0.70594,0.00337,0.01722,0.00337),(0.69841,0.00357,0.01812,0.00357),(0.68829,0.00384,0.01936,0.00384),(0.66714,0.00447,0.02209,0.00447)} {(0.00072,0.00384,0.00072,0.67636),(0.00086,0.00452,0.00086,0.65079),(0.00094,0.00489,0.00094,0.63802),(0.00100,0.00518,0.00100,0.62836),(0.00106,0.00543,0.00106,0.62018),(0.00111,0.00567,0.00111,0.61284),(0.00116,0.00589,0.00116,0.60597),(0.00121,0.00611,0.00121,0.59935),(0.00126,0.00634,0.00126,0.59279),(0.00131,0.00657,0.00131,0.58615),(0.00136,0.00681,0.00136,0.57924),(0.00143,0.00708,0.00143,0.57181),(0.00150,0.00739,0.00150,0.56352),(0.00158,0.00777,0.00158,0.55367),(0.00171,0.00829,0.00171,0.54055),(0.00199,0.00943,0.00199,0.51355)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00144,0.05479,0.00144,0.10190),(0.00173,0.05879,0.00173,0.10853),(0.00188,0.06076,0.00188,0.11174),(0.00201,0.06225,0.00201,0.11413),(0.00212,0.06349,0.00212,0.11611),(0.00222,0.06461,0.00222,0.11788),(0.00231,0.06564,0.00231,0.11950),(0.00241,0.06664,0.00241,0.12105),(0.00251,0.06762,0.00251,0.12256),(0.00262,0.06861,0.00262,0.12408),(0.00273,0.06963,0.00273,0.12563),(0.00285,0.07072,0.00285,0.12728),(0.00299,0.07193,0.00299,0.12908),(0.00317,0.07336,0.00317,0.13118),(0.00342,0.07524,0.00342,0.13390),(0.00397,0.07904,0.00397,0.13922)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.78876,0.00162,0.00885,0.00162),(0.77051,0.00194,0.01045,0.00194),(0.76129,0.00212,0.01132,0.00212),(0.75426,0.00226,0.01200,0.00226),(0.74829,0.00238,0.01259,0.00238),(0.74289,0.00249,0.01314,0.00249),(0.73782,0.00260,0.01367,0.00260),(0.73291,0.00271,0.01419,0.00271),(0.72803,0.00283,0.01472,0.00283),(0.72306,0.00294,0.01526,0.00294),(0.71786,0.00307,0.01584,0.00307),(0.71225,0.00321,0.01649,0.00321),(0.70594,0.00337,0.01722,0.00337),(0.69841,0.00357,0.01812,0.00357),(0.68829,0.00384,0.01936,0.00384),(0.66714,0.00447,0.02209,0.00447)} {(0.78876,0.00162,0.00885,0.00162),(0.77051,0.00194,0.01045,0.00194),(0.76129,0.00212,0.01132,0.00212),(0.75426,0.00226,0.01200,0.00226),(0.74829,0.00238,0.01259,0.00238),(0.74289,0.00249,0.01314,0.00249),(0.73782,0.00260,0.01367,0.00260),(0.73291,0.00271,0.01419,0.00271),(0.72803,0.00283,0.01472,0.00283),(0.72306,0.00294,0.01526,0.00294),(0.71786,0.00307,0.01584,0.00307),(0.71225,0.00321,0.01649,0.00321),(0.70594,0.00337,0.01722,0.00337),(0.69841,0.00357,0.01812,0.00357),(0.68829,0.00384,0.01936,0.00384),(0.66714,0.00447,0.02209,0.00447)} {(0.00098,0.00018,0.68131,0.00018),(0.00116,0.00022,0.65550,0.00022),(0.00126,0.00024,0.64256,0.00024),(0.00133,0.00025,0.63276,0.00025),(0.00140,0.00026,0.62446,0.00026),(0.00146,0.00028,0.61699,0.00028),(0.00152,0.00029,0.60999,0.00029),(0.00158,0.00030,0.60324,0.00030),(0.00164,0.00031,0.59656,0.00031),(0.00170,0.00033,0.58977,0.00033),(0.00176,0.00034,0.58270,0.00034),(0.00183,0.00036,0.57510,0.00036),(0.00191,0.00037,0.56659,0.00037),(0.00201,0.00040,0.55647,0.00040),(0.00215,0.00043,0.54297,0.00043),(0.00245,0.00050,0.51508,0.00050)} ] - TEST alpha(ncats) = 100.00(16) + TEST alpha(ncats) = 100.00(16), mode = MEAN + +0.822345 0.871069 0.899465 0.921407 0.940219 0.957302 0.973429 0.989114 1.004770 1.020790 1.037620 1.055860 1.076455 1.101179 1.134353 1.194621 +[8] P-matrix for branch length 0.100000 ++0.9355 +0.0307 +0.0185 +0.0153 ++0.0230 +0.9326 +0.0077 +0.0367 ++0.0554 +0.0307 +0.8985 +0.0153 ++0.0230 +0.0734 +0.0077 +0.8959 + ++0.9319 +0.0324 +0.0195 +0.0162 ++0.0243 +0.9289 +0.0081 +0.0387 ++0.0584 +0.0324 +0.8929 +0.0162 ++0.0243 +0.0773 +0.0081 +0.8902 + ++0.9298 +0.0334 +0.0201 +0.0167 ++0.0251 +0.9267 +0.0084 +0.0398 ++0.0602 +0.0334 +0.8897 +0.0167 ++0.0251 +0.0796 +0.0084 +0.8869 + ++0.9282 +0.0342 +0.0205 +0.0171 ++0.0257 +0.9251 +0.0086 +0.0407 ++0.0615 +0.0342 +0.8871 +0.0171 ++0.0257 +0.0814 +0.0086 +0.8844 + ++0.9268 +0.0349 +0.0209 +0.0174 ++0.0262 +0.9237 +0.0087 +0.0414 ++0.0627 +0.0349 +0.8850 +0.0174 ++0.0262 +0.0829 +0.0087 +0.8822 + ++0.9255 +0.0355 +0.0212 +0.0178 ++0.0266 +0.9224 +0.0089 +0.0421 ++0.0637 +0.0355 +0.8831 +0.0178 ++0.0266 +0.0843 +0.0089 +0.8802 + ++0.9243 +0.0361 +0.0216 +0.0180 ++0.0271 +0.9212 +0.0090 +0.0428 ++0.0647 +0.0361 +0.8812 +0.0180 ++0.0271 +0.0855 +0.0090 +0.8784 + ++0.9232 +0.0366 +0.0219 +0.0183 ++0.0275 +0.9200 +0.0092 +0.0434 ++0.0656 +0.0366 +0.8794 +0.0183 ++0.0275 +0.0868 +0.0092 +0.8766 + ++0.9220 +0.0372 +0.0222 +0.0186 ++0.0279 +0.9188 +0.0093 +0.0440 ++0.0666 +0.0372 +0.8777 +0.0186 ++0.0279 +0.0880 +0.0093 +0.8748 + ++0.9209 +0.0377 +0.0225 +0.0189 ++0.0283 +0.9176 +0.0094 +0.0446 ++0.0675 +0.0377 +0.8759 +0.0189 ++0.0283 +0.0893 +0.0094 +0.8730 + ++0.9197 +0.0383 +0.0228 +0.0192 ++0.0287 +0.9164 +0.0096 +0.0453 ++0.0685 +0.0383 +0.8740 +0.0192 ++0.0287 +0.0906 +0.0096 +0.8711 + ++0.9183 +0.0390 +0.0232 +0.0195 ++0.0292 +0.9150 +0.0097 +0.0460 ++0.0696 +0.0390 +0.8719 +0.0195 ++0.0292 +0.0920 +0.0097 +0.8690 + ++0.9168 +0.0397 +0.0236 +0.0198 ++0.0298 +0.9135 +0.0099 +0.0468 ++0.0708 +0.0397 +0.8696 +0.0198 ++0.0298 +0.0936 +0.0099 +0.8667 + ++0.9151 +0.0406 +0.0241 +0.0203 ++0.0304 +0.9117 +0.0101 +0.0478 ++0.0723 +0.0406 +0.8669 +0.0203 ++0.0304 +0.0955 +0.0101 +0.8639 + ++0.9127 +0.0417 +0.0247 +0.0209 ++0.0313 +0.9093 +0.0104 +0.0490 ++0.0742 +0.0417 +0.8632 +0.0209 ++0.0313 +0.0981 +0.0104 +0.8602 + ++0.9084 +0.0438 +0.0259 +0.0219 ++0.0329 +0.9049 +0.0110 +0.0513 ++0.0777 +0.0438 +0.8565 +0.0219 ++0.0329 +0.1026 +0.0110 +0.8535 + + +[8] P-matrix for branch length 0.200000 ++0.8772 +0.0590 +0.0342 +0.0295 ++0.0443 +0.8734 +0.0148 +0.0676 ++0.1027 +0.0590 +0.8088 +0.0295 ++0.0443 +0.1351 +0.0148 +0.8059 + ++0.8707 +0.0622 +0.0359 +0.0311 ++0.0467 +0.8669 +0.0156 +0.0709 ++0.1078 +0.0622 +0.7988 +0.0311 ++0.0467 +0.1417 +0.0156 +0.7960 + ++0.8669 +0.0641 +0.0369 +0.0321 ++0.0481 +0.8631 +0.0160 +0.0728 ++0.1107 +0.0641 +0.7931 +0.0321 ++0.0481 +0.1455 +0.0160 +0.7904 + ++0.8640 +0.0655 +0.0377 +0.0328 ++0.0491 +0.8603 +0.0164 +0.0742 ++0.1130 +0.0655 +0.7887 +0.0328 ++0.0491 +0.1484 +0.0164 +0.7860 + ++0.8616 +0.0667 +0.0383 +0.0334 ++0.0501 +0.8578 +0.0167 +0.0755 ++0.1149 +0.0667 +0.7850 +0.0334 ++0.0501 +0.1509 +0.0167 +0.7823 + ++0.8594 +0.0679 +0.0389 +0.0339 ++0.0509 +0.8556 +0.0170 +0.0766 ++0.1166 +0.0679 +0.7816 +0.0339 ++0.0509 +0.1531 +0.0170 +0.7790 + ++0.8573 +0.0689 +0.0394 +0.0344 ++0.0517 +0.8535 +0.0172 +0.0776 ++0.1182 +0.0689 +0.7784 +0.0344 ++0.0517 +0.1552 +0.0172 +0.7759 + ++0.8552 +0.0699 +0.0399 +0.0349 ++0.0524 +0.8515 +0.0175 +0.0786 ++0.1198 +0.0699 +0.7754 +0.0349 ++0.0524 +0.1572 +0.0175 +0.7729 + ++0.8532 +0.0709 +0.0404 +0.0354 ++0.0532 +0.8495 +0.0177 +0.0796 ++0.1213 +0.0709 +0.7723 +0.0354 ++0.0532 +0.1592 +0.0177 +0.7699 + ++0.8511 +0.0719 +0.0410 +0.0360 ++0.0539 +0.8474 +0.0180 +0.0806 ++0.1229 +0.0719 +0.7692 +0.0360 ++0.0539 +0.1613 +0.0180 +0.7668 + ++0.8490 +0.0730 +0.0415 +0.0365 ++0.0547 +0.8453 +0.0182 +0.0817 ++0.1246 +0.0730 +0.7660 +0.0365 ++0.0547 +0.1634 +0.0182 +0.7636 + ++0.8467 +0.0741 +0.0421 +0.0371 ++0.0556 +0.8430 +0.0185 +0.0828 ++0.1263 +0.0741 +0.7624 +0.0371 ++0.0556 +0.1657 +0.0185 +0.7602 + ++0.8441 +0.0754 +0.0428 +0.0377 ++0.0566 +0.8404 +0.0189 +0.0841 ++0.1283 +0.0754 +0.7585 +0.0377 ++0.0566 +0.1682 +0.0189 +0.7563 + ++0.8409 +0.0770 +0.0436 +0.0385 ++0.0578 +0.8374 +0.0193 +0.0856 ++0.1307 +0.0770 +0.7538 +0.0385 ++0.0578 +0.1712 +0.0193 +0.7518 + ++0.8368 +0.0791 +0.0446 +0.0395 ++0.0593 +0.8333 +0.0198 +0.0876 ++0.1338 +0.0791 +0.7476 +0.0395 ++0.0593 +0.1753 +0.0198 +0.7457 + ++0.8293 +0.0828 +0.0465 +0.0414 ++0.0621 +0.8260 +0.0207 +0.0912 ++0.1394 +0.0828 +0.7364 +0.0414 ++0.0621 +0.1824 +0.0207 +0.7348 + + +[8] P-matrix for branch length 1.000000 ++0.5722 +0.2200 +0.0978 +0.1100 ++0.1650 +0.5931 +0.0550 +0.1869 ++0.2935 +0.2200 +0.3766 +0.1100 ++0.1650 +0.3738 +0.0550 +0.4063 + ++0.5578 +0.2283 +0.0998 +0.1141 ++0.1712 +0.5813 +0.0571 +0.1904 ++0.2993 +0.2283 +0.3582 +0.1141 ++0.1712 +0.3808 +0.0571 +0.3909 + ++0.5497 +0.2330 +0.1008 +0.1165 ++0.1747 +0.5748 +0.0582 +0.1922 ++0.3025 +0.2330 +0.3481 +0.1165 ++0.1747 +0.3845 +0.0582 +0.3825 + ++0.5437 +0.2365 +0.1016 +0.1182 ++0.1774 +0.5699 +0.0591 +0.1936 ++0.3047 +0.2365 +0.3406 +0.1182 ++0.1774 +0.3872 +0.0591 +0.3763 + ++0.5387 +0.2394 +0.1022 +0.1197 ++0.1796 +0.5659 +0.0599 +0.1947 ++0.3065 +0.2394 +0.3343 +0.1197 ++0.1796 +0.3894 +0.0599 +0.3712 + ++0.5342 +0.2421 +0.1027 +0.1210 ++0.1816 +0.5623 +0.0605 +0.1956 ++0.3081 +0.2421 +0.3287 +0.1210 ++0.1816 +0.3913 +0.0605 +0.3667 + ++0.5300 +0.2445 +0.1032 +0.1223 ++0.1834 +0.5590 +0.0611 +0.1965 ++0.3096 +0.2445 +0.3236 +0.1223 ++0.1834 +0.3930 +0.0611 +0.3625 + ++0.5260 +0.2469 +0.1036 +0.1234 ++0.1852 +0.5558 +0.0617 +0.1973 ++0.3109 +0.2469 +0.3188 +0.1234 ++0.1852 +0.3946 +0.0617 +0.3586 + ++0.5221 +0.2492 +0.1041 +0.1246 ++0.1869 +0.5528 +0.0623 +0.1980 ++0.3122 +0.2492 +0.3140 +0.1246 ++0.1869 +0.3961 +0.0623 +0.3547 + ++0.5182 +0.2515 +0.1045 +0.1258 ++0.1886 +0.5497 +0.0629 +0.1988 ++0.3134 +0.2515 +0.3093 +0.1258 ++0.1886 +0.3976 +0.0629 +0.3509 + ++0.5142 +0.2539 +0.1049 +0.1270 ++0.1904 +0.5465 +0.0635 +0.1995 ++0.3147 +0.2539 +0.3044 +0.1270 ++0.1904 +0.3991 +0.0635 +0.3470 + ++0.5099 +0.2565 +0.1053 +0.1282 ++0.1924 +0.5432 +0.0641 +0.2003 ++0.3160 +0.2565 +0.2993 +0.1282 ++0.1924 +0.4006 +0.0641 +0.3429 + ++0.5052 +0.2593 +0.1058 +0.1297 ++0.1945 +0.5395 +0.0648 +0.2011 ++0.3174 +0.2593 +0.2936 +0.1297 ++0.1945 +0.4023 +0.0648 +0.3384 + ++0.4997 +0.2627 +0.1063 +0.1313 ++0.1970 +0.5353 +0.0657 +0.2021 ++0.3189 +0.2627 +0.2871 +0.1313 ++0.1970 +0.4041 +0.0657 +0.3332 + ++0.4925 +0.2670 +0.1069 +0.1335 ++0.2003 +0.5298 +0.0668 +0.2032 ++0.3208 +0.2670 +0.2786 +0.1335 ++0.2003 +0.4064 +0.0668 +0.3266 + ++0.4802 +0.2746 +0.1079 +0.1373 ++0.2059 +0.5204 +0.0686 +0.2050 ++0.3238 +0.2746 +0.2643 +0.1373 ++0.2059 +0.4100 +0.0686 +0.3154 + + +[8] P-matrix for branch length 1.000000 ++0.5722 +0.2200 +0.0978 +0.1100 ++0.1650 +0.5931 +0.0550 +0.1869 ++0.2935 +0.2200 +0.3766 +0.1100 ++0.1650 +0.3738 +0.0550 +0.4063 + ++0.5578 +0.2283 +0.0998 +0.1141 ++0.1712 +0.5813 +0.0571 +0.1904 ++0.2993 +0.2283 +0.3582 +0.1141 ++0.1712 +0.3808 +0.0571 +0.3909 + ++0.5497 +0.2330 +0.1008 +0.1165 ++0.1747 +0.5748 +0.0582 +0.1922 ++0.3025 +0.2330 +0.3481 +0.1165 ++0.1747 +0.3845 +0.0582 +0.3825 + ++0.5437 +0.2365 +0.1016 +0.1182 ++0.1774 +0.5699 +0.0591 +0.1936 ++0.3047 +0.2365 +0.3406 +0.1182 ++0.1774 +0.3872 +0.0591 +0.3763 + ++0.5387 +0.2394 +0.1022 +0.1197 ++0.1796 +0.5659 +0.0599 +0.1947 ++0.3065 +0.2394 +0.3343 +0.1197 ++0.1796 +0.3894 +0.0599 +0.3712 + ++0.5342 +0.2421 +0.1027 +0.1210 ++0.1816 +0.5623 +0.0605 +0.1956 ++0.3081 +0.2421 +0.3287 +0.1210 ++0.1816 +0.3913 +0.0605 +0.3667 + ++0.5300 +0.2445 +0.1032 +0.1223 ++0.1834 +0.5590 +0.0611 +0.1965 ++0.3096 +0.2445 +0.3236 +0.1223 ++0.1834 +0.3930 +0.0611 +0.3625 + ++0.5260 +0.2469 +0.1036 +0.1234 ++0.1852 +0.5558 +0.0617 +0.1973 ++0.3109 +0.2469 +0.3188 +0.1234 ++0.1852 +0.3946 +0.0617 +0.3586 + ++0.5221 +0.2492 +0.1041 +0.1246 ++0.1869 +0.5528 +0.0623 +0.1980 ++0.3122 +0.2492 +0.3140 +0.1246 ++0.1869 +0.3961 +0.0623 +0.3547 + ++0.5182 +0.2515 +0.1045 +0.1258 ++0.1886 +0.5497 +0.0629 +0.1988 ++0.3134 +0.2515 +0.3093 +0.1258 ++0.1886 +0.3976 +0.0629 +0.3509 + ++0.5142 +0.2539 +0.1049 +0.1270 ++0.1904 +0.5465 +0.0635 +0.1995 ++0.3147 +0.2539 +0.3044 +0.1270 ++0.1904 +0.3991 +0.0635 +0.3470 + ++0.5099 +0.2565 +0.1053 +0.1282 ++0.1924 +0.5432 +0.0641 +0.2003 ++0.3160 +0.2565 +0.2993 +0.1282 ++0.1924 +0.4006 +0.0641 +0.3429 + ++0.5052 +0.2593 +0.1058 +0.1297 ++0.1945 +0.5395 +0.0648 +0.2011 ++0.3174 +0.2593 +0.2936 +0.1297 ++0.1945 +0.4023 +0.0648 +0.3384 + ++0.4997 +0.2627 +0.1063 +0.1313 ++0.1970 +0.5353 +0.0657 +0.2021 ++0.3189 +0.2627 +0.2871 +0.1313 ++0.1970 +0.4041 +0.0657 +0.3332 + ++0.4925 +0.2670 +0.1069 +0.1335 ++0.2003 +0.5298 +0.0668 +0.2032 ++0.3208 +0.2670 +0.2786 +0.1335 ++0.2003 +0.4064 +0.0668 +0.3266 + ++0.4802 +0.2746 +0.1079 +0.1373 ++0.2059 +0.5204 +0.0686 +0.2050 ++0.3238 +0.2746 +0.2643 +0.1373 ++0.2059 +0.4100 +0.0686 +0.3154 + + +[8] CLV 5: [ {(0.05353,0.09767,0.00780,0.11486),(0.05613,0.10190,0.00865,0.11944),(0.05763,0.10430,0.00915,0.12202),(0.05877,0.10613,0.00955,0.12397),(0.05974,0.10767,0.00990,0.12562),(0.06061,0.10905,0.01021,0.12708),(0.06143,0.11034,0.01052,0.12845),(0.06222,0.11158,0.01082,0.12976),(0.06301,0.11280,0.01112,0.13105),(0.06380,0.11404,0.01143,0.13236),(0.06463,0.11533,0.01176,0.13370),(0.06553,0.11671,0.01212,0.13514),(0.06653,0.11824,0.01253,0.13674),(0.06772,0.12006,0.01303,0.13862),(0.06930,0.12244,0.01371,0.14108),(0.07211,0.12664,0.01497,0.14536)} {(0.76952,0.00196,0.01054,0.00196),(0.75812,0.00218,0.01162,0.00218),(0.75158,0.00231,0.01226,0.00231),(0.74658,0.00242,0.01276,0.00242),(0.74232,0.00251,0.01320,0.00251),(0.73848,0.00259,0.01360,0.00259),(0.73488,0.00267,0.01398,0.00267),(0.73141,0.00275,0.01435,0.00275),(0.72796,0.00283,0.01472,0.00283),(0.72445,0.00291,0.01511,0.00291),(0.72079,0.00300,0.01552,0.00300),(0.71685,0.00309,0.01596,0.00309),(0.71243,0.00320,0.01646,0.00320),(0.70718,0.00334,0.01707,0.00334),(0.70021,0.00352,0.01790,0.00352),(0.68778,0.00386,0.01943,0.00386)} {(0.05179,0.03867,0.00606,0.00598),(0.05420,0.04047,0.00671,0.00662),(0.05557,0.04150,0.00710,0.00700),(0.05662,0.04228,0.00740,0.00730),(0.05751,0.04294,0.00767,0.00755),(0.05831,0.04354,0.00791,0.00779),(0.05906,0.04410,0.00814,0.00802),(0.05978,0.04464,0.00837,0.00824),(0.06049,0.04517,0.00860,0.00847),(0.06122,0.04571,0.00884,0.00870),(0.06197,0.04628,0.00909,0.00894),(0.06278,0.04688,0.00937,0.00921),(0.06368,0.04756,0.00968,0.00952),(0.06475,0.04836,0.01006,0.00989),(0.06617,0.04942,0.01058,0.01039),(0.06868,0.05130,0.01154,0.01133)} {(0.00348,0.76285,0.00348,0.01825),(0.00387,0.75150,0.00387,0.02009),(0.00411,0.74500,0.00411,0.02118),(0.00429,0.74003,0.00429,0.02203),(0.00446,0.73582,0.00446,0.02277),(0.00460,0.73202,0.00460,0.02345),(0.00475,0.72846,0.00475,0.02409),(0.00489,0.72503,0.00489,0.02472),(0.00503,0.72163,0.00503,0.02535),(0.00517,0.71817,0.00517,0.02600),(0.00533,0.71456,0.00533,0.02669),(0.00550,0.71069,0.00550,0.02744),(0.00569,0.70635,0.00569,0.02829),(0.00593,0.70120,0.00593,0.02932),(0.00625,0.69438,0.00625,0.03072),(0.00686,0.68224,0.00686,0.03328)} {(0.02589,0.00299,0.00303,0.03568),(0.02710,0.00331,0.00335,0.03716),(0.02779,0.00350,0.00355,0.03800),(0.02831,0.00365,0.00370,0.03863),(0.02875,0.00378,0.00383,0.03917),(0.02915,0.00390,0.00396,0.03964),(0.02953,0.00401,0.00407,0.04009),(0.02989,0.00412,0.00419,0.04052),(0.03025,0.00423,0.00430,0.04094),(0.03061,0.00435,0.00442,0.04136),(0.03098,0.00447,0.00455,0.04180),(0.03139,0.00461,0.00468,0.04228),(0.03184,0.00476,0.00484,0.04280),(0.03238,0.00494,0.00503,0.04342),(0.03309,0.00520,0.00529,0.04422),(0.03434,0.00566,0.00577,0.04564)} {(0.00174,0.05900,0.00174,0.10888),(0.00194,0.06143,0.00194,0.11282),(0.00205,0.06281,0.00205,0.11502),(0.00215,0.06385,0.00215,0.11668),(0.00223,0.06472,0.00223,0.11806),(0.00230,0.06551,0.00230,0.11929),(0.00237,0.06624,0.00237,0.12043),(0.00244,0.06694,0.00244,0.12152),(0.00251,0.06763,0.00251,0.12259),(0.00259,0.06833,0.00259,0.12366),(0.00266,0.06905,0.00266,0.12476),(0.00275,0.06983,0.00275,0.12593),(0.00285,0.07068,0.00285,0.12722),(0.00296,0.07170,0.00296,0.12873),(0.00313,0.07302,0.00313,0.13068),(0.00343,0.07534,0.00343,0.13404)} {(0.00117,0.00022,0.65411,0.00022),(0.00129,0.00024,0.63814,0.00024),(0.00136,0.00026,0.62903,0.00026),(0.00142,0.00027,0.62209,0.00027),(0.00147,0.00028,0.61620,0.00028),(0.00151,0.00029,0.61091,0.00029),(0.00155,0.00030,0.60596,0.00030),(0.00159,0.00031,0.60119,0.00031),(0.00164,0.00031,0.59646,0.00031),(0.00168,0.00032,0.59167,0.00032),(0.00172,0.00033,0.58668,0.00033),(0.00177,0.00034,0.58133,0.00034),(0.00183,0.00036,0.57534,0.00036),(0.00190,0.00037,0.56825,0.00037),(0.00199,0.00039,0.55888,0.00039),(0.00216,0.00043,0.54229,0.00043)} 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{(0.00117,0.00022,0.65411,0.00022),(0.00129,0.00024,0.63814,0.00024),(0.00136,0.00026,0.62903,0.00026),(0.00142,0.00027,0.62209,0.00027),(0.00147,0.00028,0.61620,0.00028),(0.00151,0.00029,0.61091,0.00029),(0.00155,0.00030,0.60596,0.00030),(0.00159,0.00031,0.60119,0.00031),(0.00164,0.00031,0.59646,0.00031),(0.00168,0.00032,0.59167,0.00032),(0.00172,0.00033,0.58668,0.00033),(0.00177,0.00034,0.58133,0.00034),(0.00183,0.00036,0.57534,0.00036),(0.00190,0.00037,0.56825,0.00037),(0.00199,0.00039,0.55888,0.00039),(0.00216,0.00043,0.54229,0.00043)} ] + + + TEST alpha(ncats) = 100.00(16), mode = MEDIAN 0.813424 0.870167 0.898985 0.921047 0.939910 0.957020 0.973164 0.988862 1.004530 1.020564 1.037414 1.055688 1.076348 1.101227 1.134966 1.206684 [8] P-matrix for branch length 0.100000 @@ -6299,48 +12599,93 @@ [8] CLV 6: [ 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{(0.00115,0.00021,0.65708,0.00021),(0.00129,0.00024,0.63843,0.00024),(0.00136,0.00026,0.62918,0.00026),(0.00142,0.00027,0.62220,0.00027),(0.00147,0.00028,0.61630,0.00028),(0.00151,0.00029,0.61100,0.00029),(0.00155,0.00030,0.60604,0.00030),(0.00159,0.00031,0.60126,0.00031),(0.00164,0.00031,0.59654,0.00031),(0.00168,0.00032,0.59174,0.00032),(0.00172,0.00033,0.58674,0.00033),(0.00177,0.00034,0.58138,0.00034),(0.00183,0.00036,0.57538,0.00036),(0.00190,0.00037,0.56824,0.00037),(0.00199,0.00039,0.55871,0.00039),(0.00219,0.00044,0.53904,0.00044)} {(0.00342,0.76496,0.00342,0.01792),(0.00387,0.75171,0.00387,0.02005),(0.00410,0.74511,0.00410,0.02116),(0.00429,0.74012,0.00429,0.02202),(0.00445,0.73589,0.00445,0.02276),(0.00460,0.73208,0.00460,0.02344),(0.00474,0.72852,0.00474,0.02408),(0.00488,0.72508,0.00488,0.02471),(0.00502,0.72168,0.00502,0.02534),(0.00517,0.71822,0.00517,0.02600),(0.00533,0.71461,0.00533,0.02668),(0.00550,0.71073,0.00550,0.02743),(0.00569,0.70638,0.00569,0.02829),(0.00593,0.70119,0.00593,0.02933),(0.00626,0.69425,0.00626,0.03074),(0.00698,0.67986,0.00698,0.03379)} {(0.05134,0.03834,0.00595,0.00587),(0.05415,0.04044,0.00670,0.00660),(0.05555,0.04148,0.00709,0.00699),(0.05660,0.04227,0.00740,0.00729),(0.05749,0.04293,0.00766,0.00755),(0.05830,0.04353,0.00791,0.00779),(0.05904,0.04409,0.00814,0.00802),(0.05977,0.04463,0.00837,0.00824),(0.06048,0.04516,0.00860,0.00846),(0.06121,0.04570,0.00884,0.00870),(0.06196,0.04627,0.00909,0.00894),(0.06277,0.04688,0.00936,0.00921),(0.06368,0.04755,0.00968,0.00952),(0.06476,0.04836,0.01006,0.00989),(0.06620,0.04944,0.01059,0.01040),(0.06917,0.05167,0.01174,0.01152)} {(0.77163,0.00192,0.01035,0.00192),(0.75833,0.00218,0.01160,0.00218),(0.75169,0.00231,0.01225,0.00231),(0.74666,0.00241,0.01276,0.00241),(0.74239,0.00250,0.01319,0.00250),(0.73855,0.00259,0.01359,0.00259),(0.73494,0.00267,0.01397,0.00267),(0.73146,0.00275,0.01434,0.00275),(0.72801,0.00283,0.01472,0.00283),(0.72450,0.00291,0.01510,0.00291),(0.72083,0.00300,0.01551,0.00300),(0.71688,0.00309,0.01595,0.00309),(0.71245,0.00320,0.01646,0.00320),(0.70717,0.00334,0.01708,0.00334),(0.70008,0.00352,0.01792,0.00352),(0.68533,0.00393,0.01973,0.00393)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.77163,0.00192,0.01035,0.00192),(0.75833,0.00218,0.01160,0.00218),(0.75169,0.00231,0.01225,0.00231),(0.74666,0.00241,0.01276,0.00241),(0.74239,0.00250,0.01319,0.00250),(0.73855,0.00259,0.01359,0.00259),(0.73494,0.00267,0.01397,0.00267),(0.73146,0.00275,0.01434,0.00275),(0.72801,0.00283,0.01472,0.00283),(0.72450,0.00291,0.01510,0.00291),(0.72083,0.00300,0.01551,0.00300),(0.71688,0.00309,0.01595,0.00309),(0.71245,0.00320,0.01646,0.00320),(0.70717,0.00334,0.01708,0.00334),(0.70008,0.00352,0.01792,0.00352),(0.68533,0.00393,0.01973,0.00393)} {(0.00085,0.00448,0.00085,0.65235),(0.00097,0.00501,0.00097,0.63394),(0.00103,0.00529,0.00103,0.62483),(0.00107,0.00550,0.00107,0.61796),(0.00111,0.00569,0.00111,0.61216),(0.00115,0.00586,0.00115,0.60695),(0.00119,0.00602,0.00119,0.60209),(0.00122,0.00618,0.00122,0.59740),(0.00126,0.00634,0.00126,0.59277),(0.00129,0.00650,0.00129,0.58808),(0.00133,0.00667,0.00133,0.58319),(0.00137,0.00686,0.00137,0.57795),(0.00142,0.00707,0.00142,0.57209),(0.00148,0.00733,0.00148,0.56513),(0.00156,0.00769,0.00156,0.55585),(0.00175,0.00845,0.00175,0.53673)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.00171,0.05854,0.00171,0.10813),(0.00193,0.06139,0.00193,0.11275),(0.00205,0.06278,0.00205,0.11499),(0.00215,0.06383,0.00215,0.11665),(0.00223,0.06471,0.00223,0.11804),(0.00230,0.06550,0.00230,0.11927),(0.00237,0.06623,0.00237,0.12041),(0.00244,0.06693,0.00244,0.12150),(0.00251,0.06762,0.00251,0.12257),(0.00259,0.06832,0.00259,0.12364),(0.00266,0.06904,0.00266,0.12475),(0.00275,0.06982,0.00275,0.12592),(0.00285,0.07068,0.00285,0.12722),(0.00296,0.07170,0.00296,0.12873),(0.00313,0.07305,0.00313,0.13072),(0.00349,0.07579,0.00349,0.13468)} {(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000),(1.00000,1.00000,1.00000,1.00000)} {(0.77163,0.00192,0.01035,0.00192),(0.75833,0.00218,0.01160,0.00218),(0.75169,0.00231,0.01225,0.00231),(0.74666,0.00241,0.01276,0.00241),(0.74239,0.00250,0.01319,0.00250),(0.73855,0.00259,0.01359,0.00259),(0.73494,0.00267,0.01397,0.00267),(0.73146,0.00275,0.01434,0.00275),(0.72801,0.00283,0.01472,0.00283),(0.72450,0.00291,0.01510,0.00291),(0.72083,0.00300,0.01551,0.00300),(0.71688,0.00309,0.01595,0.00309),(0.71245,0.00320,0.01646,0.00320),(0.70717,0.00334,0.01708,0.00334),(0.70008,0.00352,0.01792,0.00352),(0.68533,0.00393,0.01973,0.00393)} {(0.77163,0.00192,0.01035,0.00192),(0.75833,0.00218,0.01160,0.00218),(0.75169,0.00231,0.01225,0.00231),(0.74666,0.00241,0.01276,0.00241),(0.74239,0.00250,0.01319,0.00250),(0.73855,0.00259,0.01359,0.00259),(0.73494,0.00267,0.01397,0.00267),(0.73146,0.00275,0.01434,0.00275),(0.72801,0.00283,0.01472,0.00283),(0.72450,0.00291,0.01510,0.00291),(0.72083,0.00300,0.01551,0.00300),(0.71688,0.00309,0.01595,0.00309),(0.71245,0.00320,0.01646,0.00320),(0.70717,0.00334,0.01708,0.00334),(0.70008,0.00352,0.01792,0.00352),(0.68533,0.00393,0.01973,0.00393)} {(0.00115,0.00021,0.65708,0.00021),(0.00129,0.00024,0.63843,0.00024),(0.00136,0.00026,0.62918,0.00026),(0.00142,0.00027,0.62220,0.00027),(0.00147,0.00028,0.61630,0.00028),(0.00151,0.00029,0.61100,0.00029),(0.00155,0.00030,0.60604,0.00030),(0.00159,0.00031,0.60126,0.00031),(0.00164,0.00031,0.59654,0.00031),(0.00168,0.00032,0.59174,0.00032),(0.00172,0.00033,0.58674,0.00033),(0.00177,0.00034,0.58138,0.00034),(0.00183,0.00036,0.57538,0.00036),(0.00190,0.00037,0.56824,0.00037),(0.00199,0.00039,0.55871,0.00039),(0.00219,0.00044,0.53904,0.00044)} ] -ti/tv:alpha(ncats) = 0.10( 1) logL: -91.041015 -ti/tv:alpha(ncats) = 0.50( 1) logL: -91.041015 -ti/tv:alpha(ncats) = 0.75( 1) logL: -91.041015 -ti/tv:alpha(ncats) = 1.00( 1) logL: -91.041015 -ti/tv:alpha(ncats) = 1.50( 1) logL: -91.041015 -ti/tv:alpha(ncats) = 5.00( 1) logL: -91.041015 -ti/tv:alpha(ncats) = 10.00( 1) logL: -91.041015 -ti/tv:alpha(ncats) = 50.00( 1) logL: -91.041015 -ti/tv:alpha(ncats) = 100.00( 1) logL: -91.041015 -ti/tv:alpha(ncats) = 0.10( 2) logL: -93.294324 -ti/tv:alpha(ncats) = 0.50( 2) logL: -91.456606 -ti/tv:alpha(ncats) = 0.75( 2) logL: -91.003531 -ti/tv:alpha(ncats) = 1.00( 2) logL: -90.835262 -ti/tv:alpha(ncats) = 1.50( 2) logL: -90.750305 -ti/tv:alpha(ncats) = 5.00( 2) logL: -90.866235 -ti/tv:alpha(ncats) = 10.00( 2) logL: -90.942023 -ti/tv:alpha(ncats) = 50.00( 2) logL: -91.019222 -ti/tv:alpha(ncats) = 100.00( 2) logL: -91.029989 -ti/tv:alpha(ncats) = 0.10( 4) logL: -98.516530 -ti/tv:alpha(ncats) = 0.50( 4) logL: -91.758223 -ti/tv:alpha(ncats) = 0.75( 4) logL: -91.184045 -ti/tv:alpha(ncats) = 1.00( 4) logL: -90.943555 -ti/tv:alpha(ncats) = 1.50( 4) logL: -90.778310 -ti/tv:alpha(ncats) = 5.00( 4) logL: -90.827140 -ti/tv:alpha(ncats) = 10.00( 4) logL: -90.913620 -ti/tv:alpha(ncats) = 50.00( 4) logL: -91.011843 -ti/tv:alpha(ncats) = 100.00( 4) logL: -91.026184 -ti/tv:alpha(ncats) = 0.10( 8) logL: -98.005634 -ti/tv:alpha(ncats) = 0.50( 8) logL: -91.867331 -ti/tv:alpha(ncats) = 0.75( 8) logL: -91.252501 -ti/tv:alpha(ncats) = 1.00( 8) logL: -90.989516 -ti/tv:alpha(ncats) = 1.50( 8) logL: -90.799009 -ti/tv:alpha(ncats) = 5.00( 8) logL: -90.816779 -ti/tv:alpha(ncats) = 10.00( 8) logL: -90.904376 -ti/tv:alpha(ncats) = 50.00( 8) logL: -91.009134 -ti/tv:alpha(ncats) = 100.00( 8) logL: -91.024767 -ti/tv:alpha(ncats) = 0.10(16) logL: -98.280777 -ti/tv:alpha(ncats) = 0.50(16) logL: -91.913727 -ti/tv:alpha(ncats) = 0.75(16) logL: -91.281056 -ti/tv:alpha(ncats) = 1.00(16) logL: -91.009018 -ti/tv:alpha(ncats) = 1.50(16) logL: -90.809120 -ti/tv:alpha(ncats) = 5.00(16) logL: -90.814052 -ti/tv:alpha(ncats) = 10.00(16) logL: -90.901274 -ti/tv:alpha(ncats) = 50.00(16) logL: -91.008110 -ti/tv:alpha(ncats) = 100.00(16) logL: -91.024225 +ti/tv:alpha(ncats) = 0.10( 1), mode = MEDIAN(1) logL: -91.041015 +ti/tv:alpha(ncats) = 0.10( 1), mode = MEAN(0) logL: -91.041015 +ti/tv:alpha(ncats) = 0.50( 1), mode = MEDIAN(1) logL: -91.041015 +ti/tv:alpha(ncats) = 0.50( 1), mode = MEAN(0) logL: -91.041015 +ti/tv:alpha(ncats) = 0.75( 1), mode = MEDIAN(1) logL: -91.041015 +ti/tv:alpha(ncats) = 0.75( 1), mode = MEAN(0) logL: -91.041015 +ti/tv:alpha(ncats) = 1.00( 1), mode = MEDIAN(1) logL: -91.041015 +ti/tv:alpha(ncats) = 1.00( 1), mode = MEAN(0) logL: -91.041015 +ti/tv:alpha(ncats) = 1.50( 1), mode = MEDIAN(1) logL: -91.041015 +ti/tv:alpha(ncats) = 1.50( 1), mode = MEAN(0) logL: -91.041015 +ti/tv:alpha(ncats) = 5.00( 1), mode = MEDIAN(1) logL: -91.041015 +ti/tv:alpha(ncats) = 5.00( 1), mode = MEAN(0) logL: -91.041015 +ti/tv:alpha(ncats) = 10.00( 1), mode = MEDIAN(1) logL: -91.041015 +ti/tv:alpha(ncats) = 10.00( 1), mode = MEAN(0) logL: -91.041015 +ti/tv:alpha(ncats) = 50.00( 1), mode = MEDIAN(1) logL: -91.041015 +ti/tv:alpha(ncats) = 50.00( 1), mode = MEAN(0) logL: -91.041015 +ti/tv:alpha(ncats) = 100.00( 1), mode = MEDIAN(1) logL: -91.041015 +ti/tv:alpha(ncats) = 100.00( 1), mode = MEAN(0) logL: -91.041015 +ti/tv:alpha(ncats) = 0.10( 2), mode = MEDIAN(1) logL: -93.305813 +ti/tv:alpha(ncats) = 0.10( 2), mode = MEAN(0) logL: -93.294324 +ti/tv:alpha(ncats) = 0.50( 2), mode = MEDIAN(1) logL: -91.457543 +ti/tv:alpha(ncats) = 0.50( 2), mode = MEAN(0) logL: -91.456606 +ti/tv:alpha(ncats) = 0.75( 2), mode = MEDIAN(1) logL: -90.936672 +ti/tv:alpha(ncats) = 0.75( 2), mode = MEAN(0) logL: -91.003531 +ti/tv:alpha(ncats) = 1.00( 2), mode = MEDIAN(1) logL: -90.787765 +ti/tv:alpha(ncats) = 1.00( 2), mode = MEAN(0) logL: -90.835262 +ti/tv:alpha(ncats) = 1.50( 2), mode = MEDIAN(1) logL: -90.749243 +ti/tv:alpha(ncats) = 1.50( 2), mode = MEAN(0) logL: -90.750305 +ti/tv:alpha(ncats) = 5.00( 2), mode = MEDIAN(1) logL: -90.902396 +ti/tv:alpha(ncats) = 5.00( 2), mode = MEAN(0) logL: -90.866235 +ti/tv:alpha(ncats) = 10.00( 2), mode = MEDIAN(1) logL: -90.966448 +ti/tv:alpha(ncats) = 10.00( 2), mode = MEAN(0) logL: -90.942023 +ti/tv:alpha(ncats) = 50.00( 2), mode = MEDIAN(1) logL: -91.025275 +ti/tv:alpha(ncats) = 50.00( 2), mode = MEAN(0) logL: -91.019222 +ti/tv:alpha(ncats) = 100.00( 2), mode = MEDIAN(1) logL: -91.033094 +ti/tv:alpha(ncats) = 100.00( 2), mode = MEAN(0) logL: -91.029989 +ti/tv:alpha(ncats) = 0.10( 4), mode = MEDIAN(1) logL: -98.047421 +ti/tv:alpha(ncats) = 0.10( 4), mode = MEAN(0) logL: -98.516530 +ti/tv:alpha(ncats) = 0.50( 4), mode = MEDIAN(1) logL: -91.628584 +ti/tv:alpha(ncats) = 0.50( 4), mode = MEAN(0) logL: -91.758223 +ti/tv:alpha(ncats) = 0.75( 4), mode = MEDIAN(1) logL: -91.109832 +ti/tv:alpha(ncats) = 0.75( 4), mode = MEAN(0) logL: -91.184045 +ti/tv:alpha(ncats) = 1.00( 4), mode = MEDIAN(1) logL: -90.895886 +ti/tv:alpha(ncats) = 1.00( 4), mode = MEAN(0) logL: -90.943555 +ti/tv:alpha(ncats) = 1.50( 4), mode = MEDIAN(1) logL: -90.763329 +ti/tv:alpha(ncats) = 1.50( 4), mode = MEAN(0) logL: -90.778310 +ti/tv:alpha(ncats) = 5.00( 4), mode = MEDIAN(1) logL: -90.850340 +ti/tv:alpha(ncats) = 5.00( 4), mode = MEAN(0) logL: -90.827140 +ti/tv:alpha(ncats) = 10.00( 4), mode = MEDIAN(1) logL: -90.931461 +ti/tv:alpha(ncats) = 10.00( 4), mode = MEAN(0) logL: -90.913620 +ti/tv:alpha(ncats) = 50.00( 4), mode = MEDIAN(1) logL: -91.016676 +ti/tv:alpha(ncats) = 50.00( 4), mode = MEAN(0) logL: -91.011843 +ti/tv:alpha(ncats) = 100.00( 4), mode = MEDIAN(1) logL: -91.028689 +ti/tv:alpha(ncats) = 100.00( 4), mode = MEAN(0) logL: -91.026184 +ti/tv:alpha(ncats) = 0.10( 8), mode = MEDIAN(1) logL: -97.503618 +ti/tv:alpha(ncats) = 0.10( 8), mode = MEAN(0) logL: -98.005634 +ti/tv:alpha(ncats) = 0.50( 8), mode = MEDIAN(1) logL: -91.760299 +ti/tv:alpha(ncats) = 0.50( 8), mode = MEAN(0) logL: -91.867331 +ti/tv:alpha(ncats) = 0.75( 8), mode = MEDIAN(1) logL: -91.194353 +ti/tv:alpha(ncats) = 0.75( 8), mode = MEAN(0) logL: -91.252501 +ti/tv:alpha(ncats) = 1.00( 8), mode = MEDIAN(1) logL: -90.954201 +ti/tv:alpha(ncats) = 1.00( 8), mode = MEAN(0) logL: -90.989516 +ti/tv:alpha(ncats) = 1.50( 8), mode = MEDIAN(1) logL: -90.786023 +ti/tv:alpha(ncats) = 1.50( 8), mode = MEAN(0) logL: -90.799009 +ti/tv:alpha(ncats) = 5.00( 8), mode = MEDIAN(1) logL: -90.829328 +ti/tv:alpha(ncats) = 5.00( 8), mode = MEAN(0) logL: -90.816779 +ti/tv:alpha(ncats) = 10.00( 8), mode = MEDIAN(1) logL: -90.914891 +ti/tv:alpha(ncats) = 10.00( 8), mode = MEAN(0) logL: -90.904376 +ti/tv:alpha(ncats) = 50.00( 8), mode = MEDIAN(1) logL: -91.012156 +ti/tv:alpha(ncats) = 50.00( 8), mode = MEAN(0) logL: -91.009134 +ti/tv:alpha(ncats) = 100.00( 8), mode = MEDIAN(1) logL: -91.026345 +ti/tv:alpha(ncats) = 100.00( 8), mode = MEAN(0) logL: -91.024767 +ti/tv:alpha(ncats) = 0.10(16), mode = MEDIAN(1) logL: -97.943607 +ti/tv:alpha(ncats) = 0.10(16), mode = MEAN(0) logL: -98.280777 +ti/tv:alpha(ncats) = 0.50(16), mode = MEDIAN(1) logL: -91.841336 +ti/tv:alpha(ncats) = 0.50(16), mode = MEAN(0) logL: -91.913727 +ti/tv:alpha(ncats) = 0.75(16), mode = MEDIAN(1) logL: -91.241476 +ti/tv:alpha(ncats) = 0.75(16), mode = MEAN(0) logL: -91.281056 +ti/tv:alpha(ncats) = 1.00(16), mode = MEDIAN(1) logL: -90.985208 +ti/tv:alpha(ncats) = 1.00(16), mode = MEAN(0) logL: -91.009018 +ti/tv:alpha(ncats) = 1.50(16), mode = MEDIAN(1) logL: -90.799856 +ti/tv:alpha(ncats) = 1.50(16), mode = MEAN(0) logL: -90.809120 +ti/tv:alpha(ncats) = 5.00(16), mode = MEDIAN(1) logL: -90.820404 +ti/tv:alpha(ncats) = 5.00(16), mode = MEAN(0) logL: -90.814052 +ti/tv:alpha(ncats) = 10.00(16), mode = MEDIAN(1) logL: -90.906979 +ti/tv:alpha(ncats) = 10.00(16), mode = MEAN(0) logL: -90.901274 +ti/tv:alpha(ncats) = 50.00(16), mode = MEDIAN(1) logL: -91.009829 +ti/tv:alpha(ncats) = 50.00(16), mode = MEAN(0) logL: -91.008110 +ti/tv:alpha(ncats) = 100.00(16), mode = MEDIAN(1) logL: -91.025128 +ti/tv:alpha(ncats) = 100.00(16), mode = MEAN(0) logL: -91.024225 diff --git a/test/src/00010_NMDU_lkcalc.c b/test/src/00010_NMDU_lkcalc.c index a87950c..138d113 100644 --- a/test/src/00010_NMDU_lkcalc.c +++ b/test/src/00010_NMDU_lkcalc.c @@ -96,7 +96,7 @@ int main(int argc, char * argv[]) double * persite_lnl = (double *) malloc(n_sites * sizeof(double)); double checksum; - if (pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats) == PLL_FAILURE) + if (pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats, PLL_GAMMA_RATES_MEAN) == PLL_FAILURE) { printf("Error %d: %s\n", pll_errno, pll_errmsg); fatal("Fail computing gamma cats"); @@ -142,7 +142,7 @@ int main(int argc, char * argv[]) /* test illegal alpha value */ double invalid_alpha = 0; - if (pll_compute_gamma_cats(invalid_alpha, N_CAT_GAMMA, rate_cats) == PLL_FAILURE) + if (pll_compute_gamma_cats(invalid_alpha, N_CAT_GAMMA, rate_cats, PLL_GAMMA_RATES_MEAN) == PLL_FAILURE) { if (pll_errno != PLL_ERROR_PARAM_INVALID) printf("Error is %d instead of %d\n", pll_errno, PLL_ERROR_PARAM_INVALID); diff --git a/test/src/00011_NMAU_lkcalc.c b/test/src/00011_NMAU_lkcalc.c index 7852e05..2fb4b32 100644 --- a/test/src/00011_NMAU_lkcalc.c +++ b/test/src/00011_NMAU_lkcalc.c @@ -94,7 +94,7 @@ int main(int argc, char * argv[]) double * persite_lnl = (double *) malloc(n_sites * sizeof(double)); double checksum; - if (pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats) == PLL_FAILURE) + if (pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats, PLL_GAMMA_RATES_MEAN) == PLL_FAILURE) { printf("Error %d: %s\n", pll_errno, pll_errmsg); fatal("Fail computing gamma cats"); diff --git a/test/src/00012_NMOU_lkcalc.c b/test/src/00012_NMOU_lkcalc.c index ce10b95..eccd0f8 100644 --- a/test/src/00012_NMOU_lkcalc.c +++ b/test/src/00012_NMOU_lkcalc.c @@ -116,7 +116,7 @@ int main(int argc, char * argv[]) double * persite_lnl = (double *) malloc(n_sites * sizeof(double)); double checksum; - if (pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats) == PLL_FAILURE) + if (pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats, PLL_GAMMA_RATES_MEAN) == PLL_FAILURE) { printf("Error %d: %s\n", pll_errno, pll_errmsg); fatal("Fail computing gamma cats"); diff --git a/test/src/00020_NMDR_lkcalc.c b/test/src/00020_NMDR_lkcalc.c index 85b39bf..d4555fc 100644 --- a/test/src/00020_NMDR_lkcalc.c +++ b/test/src/00020_NMDR_lkcalc.c @@ -105,7 +105,7 @@ int main(int argc, char * argv[]) unsigned int matrix_indices[4] = { 0, 1, 2, 3 }; double subst_params[6] = {1,titv,1,1,titv,1}; - if (pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats) == PLL_FAILURE) + if (pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats, PLL_GAMMA_RATES_MEAN) == PLL_FAILURE) { printf("Error %d: %s\n", pll_errno, pll_errmsg); fatal("Fail computing gamma cats"); @@ -148,7 +148,7 @@ int main(int argc, char * argv[]) /* test illegal alpha value */ double invalid_alpha = 0; - if (pll_compute_gamma_cats(invalid_alpha, N_CAT_GAMMA, rate_cats) == PLL_FAILURE) + if (pll_compute_gamma_cats(invalid_alpha, N_CAT_GAMMA, rate_cats, PLL_GAMMA_RATES_MEAN) == PLL_FAILURE) { if (pll_errno != PLL_ERROR_PARAM_INVALID) printf("Error is %d instead of %d\n", pll_errno, PLL_ERROR_PARAM_INVALID); diff --git a/test/src/00021_NMAR_lkcalc.c b/test/src/00021_NMAR_lkcalc.c index d5983fe..628f5f3 100644 --- a/test/src/00021_NMAR_lkcalc.c +++ b/test/src/00021_NMAR_lkcalc.c @@ -103,7 +103,7 @@ int main(int argc, char * argv[]) double branch_lengths[4] = { 0.5, 0.5, 0.3, 0.2}; unsigned int matrix_indices[4] = { 0, 1, 2, 3 }; - if (pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats) == PLL_FAILURE) + if (pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats, PLL_GAMMA_RATES_MEAN) == PLL_FAILURE) { printf("Error %d: %s\n", pll_errno, pll_errmsg); fatal("Fail computing gamma cats"); diff --git a/test/src/00022_NMOR_lkcalc.c b/test/src/00022_NMOR_lkcalc.c index fa9e4e8..5a6d7bc 100644 --- a/test/src/00022_NMOR_lkcalc.c +++ b/test/src/00022_NMOR_lkcalc.c @@ -125,7 +125,7 @@ int main(int argc, char * argv[]) 3.4, 3.5, 1.0 }; - if (pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats) == PLL_FAILURE) + if (pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats, PLL_GAMMA_RATES_MEAN) == PLL_FAILURE) { printf("Error %d: %s\n", pll_errno, pll_errmsg); fatal("Fail computing gamma cats"); @@ -172,7 +172,7 @@ int main(int argc, char * argv[]) /* test illegal alpha value */ double invalid_alpha = 0; - if (pll_compute_gamma_cats(invalid_alpha, N_CAT_GAMMA, rate_cats) == PLL_FAILURE) + if (pll_compute_gamma_cats(invalid_alpha, N_CAT_GAMMA, rate_cats, PLL_GAMMA_RATES_MEAN) == PLL_FAILURE) { if (pll_errno != PLL_ERROR_PARAM_INVALID) printf("Error is %d instead of %d\n", pll_errno, PLL_ERROR_PARAM_INVALID); diff --git a/test/src/00030_NMDU_gamma.c b/test/src/00030_NMDU_gamma.c index 2156294..a4241dc 100644 --- a/test/src/00030_NMDU_gamma.c +++ b/test/src/00030_NMDU_gamma.c @@ -29,17 +29,55 @@ static double alpha = 0.5; static unsigned int n_cat_gamma = N_CAT_GAMMA; unsigned int params_indices[16] = {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0}; -int main(int argc, char * argv[]) +void test_bad_alpha() { + double rate_cats[N_CAT_GAMMA]; + + /* test illegal alpha value */ + double invalid_alpha = 0; + if (pll_compute_gamma_cats(invalid_alpha, N_CAT_GAMMA, + rate_cats, PLL_GAMMA_RATES_MEAN) == PLL_FAILURE) + { + if (pll_errno != PLL_ERROR_PARAM_INVALID) + printf("Error is %d instead of %d\n", pll_errno, PLL_ERROR_PARAM_INVALID); + } + else + { + printf("Computing gamma rates for alpha = %f should have failed\n", + invalid_alpha); + } +} + +double test_lk(pll_partition_t * partition, int gamma_mode) +{ + double branch_lengths[4] = { 0.1, 0.2, 1, 1}; + unsigned int matrix_indices[4] = { 0, 1, 2, 3 }; + double rate_cats[N_CAT_GAMMA]; unsigned int j; double lk_score; - unsigned int n_sites = 12; - unsigned int n_tips = 5; - double rate_cats[N_CAT_GAMMA]; - int return_val; - pll_operation_t * operations; + unsigned int n_sites = partition->sites; + double * persite_lnl = (double *) malloc(n_sites * sizeof(double)); + double checksum; + char prefix[10]; + pll_operation_t operations[4]; - operations = (pll_operation_t *)malloc(4* sizeof(pll_operation_t)); + strcpy(prefix, gamma_mode == PLL_GAMMA_RATES_MEDIAN ? "MEDIAN" : "MEAN"); + + if (pll_compute_gamma_cats(alpha, n_cat_gamma, + rate_cats, gamma_mode) == PLL_FAILURE) + { + printf("Error %d: %s\n", pll_errno, pll_errmsg); + fatal("Fail computing gamma cats"); + } + + printf ("[%s] Discrete GAMMA rates: ", prefix); + for (j = 0; j < 4; ++j) + { + printf ("%.6lf ", rate_cats[j]); + } + printf ("\n"); + + pll_set_category_rates(partition, rate_cats); operations[0].parent_clv_index = 5; operations[0].child1_clv_index = 0; @@ -68,72 +106,23 @@ int main(int argc, char * argv[]) operations[2].child1_scaler_index = PLL_SCALE_BUFFER_NONE; operations[2].child2_scaler_index = PLL_SCALE_BUFFER_NONE; - /* check attributes */ - unsigned int attributes = get_attributes(argc, argv); - - pll_partition_t * partition; - partition = pll_partition_create( - n_tips, /* numer of tips */ - 4, /* clv buffers */ - N_STATES_NT, /* number of states */ - n_sites, /* sequence length */ - 1, /* different rate parameters */ - 2*n_tips-3, /* probability matrices */ - n_cat_gamma, /* gamma categories */ - 0, /* scale buffers */ - attributes - ); /* attributes */ - - if (!partition) - { - printf("Error %d: %s\n", pll_errno, pll_errmsg); - fatal("Fail creating partition"); - } - - double branch_lengths[4] = { 0.1, 0.2, 1, 1}; - double frequencies[4] = { 0.3, 0.4, 0.1, 0.2 }; - unsigned int matrix_indices[4] = { 0, 1, 2, 3 }; - double subst_params[6] = {1,titv,1,1,titv,1}; - double * persite_lnl = (double *) malloc(n_sites * sizeof(double)); - double checksum; - - if (pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats) == PLL_FAILURE) - { - printf("Error %d: %s\n", pll_errno, pll_errmsg); - fatal("Fail computing gamma cats"); - } - - pll_set_frequencies(partition, 0, frequencies); - pll_set_subst_params(partition, 0, subst_params); - - return_val = PLL_SUCCESS; - return_val &= pll_set_tip_states(partition, 0, pll_map_nt, "WAC-CTA-ATCT"); - return_val &= pll_set_tip_states(partition, 1, pll_map_nt, "CCC-TTA-ATGT"); - return_val &= pll_set_tip_states(partition, 2, pll_map_nt, "A-C-TAG-CTCT"); - return_val &= pll_set_tip_states(partition, 3, pll_map_nt, "CTCTTAA-A-CG"); - return_val &= pll_set_tip_states(partition, 4, pll_map_nt, "CAC-TCA-A-TG"); - - if (!return_val) - fatal("Error setting tip states"); - - pll_set_category_rates(partition, rate_cats); - pll_update_prob_matrices(partition, params_indices, matrix_indices, branch_lengths, 4); pll_update_partials(partition, operations, 3); for (j = 0; j < 4; ++j) { - printf ("[%d] P-matrix for branch length %f\n", j+1, branch_lengths[j]); + printf ("[%s][%d] P-matrix for branch length %f\n", + prefix, j+1, branch_lengths[j]); pll_show_pmatrix(partition, j, FLOAT_PRECISION); printf ("\n"); } /* show CLVs */ - printf ("[5] CLV 5: "); + printf ("[%s][5] CLV 5: ", prefix); pll_show_clv(partition,5,PLL_SCALE_BUFFER_NONE,FLOAT_PRECISION+1); - printf ("[6] CLV 6: "); + printf ("\n[%s][6] CLV 6: ", prefix); pll_show_clv(partition,6,PLL_SCALE_BUFFER_NONE,FLOAT_PRECISION+1); - printf ("[7] CLV 7: "); + printf ("\n[%s][7] CLV 7: ", prefix); pll_show_clv(partition,7,PLL_SCALE_BUFFER_NONE,FLOAT_PRECISION+1); lk_score = pll_compute_edge_loglikelihood(partition, @@ -145,23 +134,10 @@ int main(int argc, char * argv[]) params_indices, persite_lnl); - /* test illegal alpha value */ - double invalid_alpha = 0; - if (pll_compute_gamma_cats(invalid_alpha, N_CAT_GAMMA, rate_cats) == PLL_FAILURE) - { - if (pll_errno != PLL_ERROR_PARAM_INVALID) - printf("Error is %d instead of %d\n", pll_errno, PLL_ERROR_PARAM_INVALID); - } - else - { - printf("Computing gamma rates for alpha = %f should have failed\n", - invalid_alpha); - } - printf("\n"); - printf("inner-inner logL: %.6f\n", - lk_score); - printf("persite logL: "); + printf("[%s] inner-inner logL: %.6f\n", + prefix, lk_score); + printf("[%s] persite logL: ", prefix); checksum = 0.0; for (int i=0; irate_cats, categories); + pll_compute_gamma_cats(alpha, partition->rate_cats, categories, PLL_GAMMA_RATES_MEAN); pll_set_category_rates(partition, categories); pll_update_prob_matrices(partition, diff --git a/test/src/derivatives-oddstates.c b/test/src/derivatives-oddstates.c index e582cc4..3e32ee4 100644 --- a/test/src/derivatives-oddstates.c +++ b/test/src/derivatives-oddstates.c @@ -165,7 +165,7 @@ int main(int argc, char * argv[]) double * rate_cats = (double *) malloc(n_cat_gamma[k] * sizeof(double)); - if (pll_compute_gamma_cats(alpha[i], n_cat_gamma[k], rate_cats) == PLL_FAILURE) + if (pll_compute_gamma_cats(alpha[i], n_cat_gamma[k], rate_cats, PLL_GAMMA_RATES_MEAN) == PLL_FAILURE) { printf("Fail computing the gamma rates\n"); continue; diff --git a/test/src/derivatives.c b/test/src/derivatives.c index dcdc552..a01fec5 100644 --- a/test/src/derivatives.c +++ b/test/src/derivatives.c @@ -153,7 +153,7 @@ int main(int argc, char * argv[]) double * rate_cats = (double *) malloc(n_cat_gamma[k] * sizeof(double)); - if (pll_compute_gamma_cats(alpha[i], n_cat_gamma[k], rate_cats) == PLL_FAILURE) + if (pll_compute_gamma_cats(alpha[i], n_cat_gamma[k], rate_cats, PLL_GAMMA_RATES_MEAN) == PLL_FAILURE) { printf("Fail computing the gamma rates\n"); continue; diff --git a/test/src/hky.c b/test/src/hky.c index b72aa6c..1ed26e8 100644 --- a/test/src/hky.c +++ b/test/src/hky.c @@ -58,7 +58,7 @@ int main(int argc, char * argv[]) double subst_params[6] = {1,1,1,1,1,1}; double rate_cats[4]; - pll_compute_gamma_cats(alpha, N_CAT_GAMMA, rate_cats); + pll_compute_gamma_cats(alpha, N_CAT_GAMMA, rate_cats, PLL_GAMMA_RATES_MEAN); pll_set_frequencies(partition, 0, frequencies); diff --git a/test/src/partial-traversal.c b/test/src/partial-traversal.c index e079c87..8d35982 100644 --- a/test/src/partial-traversal.c +++ b/test/src/partial-traversal.c @@ -204,7 +204,7 @@ int main(int argc, char * argv[]) /* compute the discretized category rates from a gamma distribution with alpha shape 1 and store them in rate_cats */ - pll_compute_gamma_cats(1, 4, rate_cats); + pll_compute_gamma_cats(1, 4, rate_cats, PLL_GAMMA_RATES_MEAN); /* set frequencies at model with index 0 (we currently have only one model) */ pll_set_frequencies(partition, 0, frequencies); diff --git a/test/src/protein-models.c b/test/src/protein-models.c index 850581a..0d74dc0 100644 --- a/test/src/protein-models.c +++ b/test/src/protein-models.c @@ -99,7 +99,7 @@ int main(int argc, char * argv[]) double * rate_cats = (double *) malloc(N_RATE_CATS * sizeof(double)); - if (pll_compute_gamma_cats(ALPHA, N_RATE_CATS, rate_cats) == PLL_FAILURE) + if (pll_compute_gamma_cats(ALPHA, N_RATE_CATS, rate_cats, PLL_GAMMA_RATES_MEAN) == PLL_FAILURE) { printf("Fail computing the gamma rates\n"); exit(1); diff --git a/test/src/rooted-tipinner.c b/test/src/rooted-tipinner.c index 1fea51d..7098a26 100644 --- a/test/src/rooted-tipinner.c +++ b/test/src/rooted-tipinner.c @@ -146,7 +146,7 @@ int main(int argc, char * argv[]) /* compute the discretized category rates from a gamma distribution with alpha shape 1 and store them in rate_cats */ - pll_compute_gamma_cats(1, 4, rate_cats); + pll_compute_gamma_cats(1, 4, rate_cats, PLL_GAMMA_RATES_MEAN); /* set frequencies at model with index 0 (we currently have only one model) */ pll_set_frequencies(partition, 0, frequencies); diff --git a/test/src/rooted.c b/test/src/rooted.c index 630241e..a6e598d 100644 --- a/test/src/rooted.c +++ b/test/src/rooted.c @@ -147,7 +147,7 @@ int main(int argc, char * argv[]) /* compute the discretized category rates from a gamma distribution with alpha shape 1 and store them in rate_cats */ - pll_compute_gamma_cats(1, 4, rate_cats); + pll_compute_gamma_cats(1, 4, rate_cats, PLL_GAMMA_RATES_MEAN); /* set frequencies at model with index 0 (we currently have only one model) */ pll_set_frequencies(partition, 0, frequencies); diff --git a/test/src/scaling.c b/test/src/scaling.c index 00a3f78..d860bed 100644 --- a/test/src/scaling.c +++ b/test/src/scaling.c @@ -211,7 +211,7 @@ int eval(pll_partition_t * partition, double alpha) unsigned int i; double d_f, dd_f; - pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats); + pll_compute_gamma_cats(alpha, n_cat_gamma, rate_cats, PLL_GAMMA_RATES_MEAN); pll_set_category_rates(partition, rate_cats); printf("scaling = ");