From 34059788e8d3cca1aed3be424e4d823da3acf79a Mon Sep 17 00:00:00 2001 From: Andrei Stoian <95410270+andrei-stoian-zama@users.noreply.github.com> Date: Tue, 23 Apr 2024 10:16:07 +0200 Subject: [PATCH] chore: remove sphinx doc build (#631) --- .gitignore | 5 - Makefile | 60 +- deps_licenses/licenses_linux_user.txt | 17 +- deps_licenses/licenses_linux_user.txt.md5 | 2 +- docs/Makefile | 20 - docs/conf.py | 140 --- docs/developer/documenting.md | 22 - docs/index.toc.txt | 101 -- docs/make.bat | 35 - poetry.lock | 1027 ++++++++--------- pyproject.toml | 6 +- script/doc_utils/fix_api_readme_reference.py | 68 -- ..._to_html_conversion_from_sphinx_in_href.py | 68 -- .../doc_utils/sphinx_gitbook_admonitions.py | 128 -- script/make_utils/fix_api_readme_reference.sh | 10 - ..._to_html_conversion_from_sphinx_in_href.sh | 10 - .../make_utils/sphinx_gitbook_admonitions.sh | 9 - 17 files changed, 490 insertions(+), 1238 deletions(-) delete mode 100644 docs/Makefile delete mode 100644 docs/conf.py delete mode 100644 docs/index.toc.txt delete mode 100644 docs/make.bat delete mode 100644 script/doc_utils/fix_api_readme_reference.py delete mode 100644 script/doc_utils/fix_md_to_html_conversion_from_sphinx_in_href.py delete mode 100644 script/doc_utils/sphinx_gitbook_admonitions.py delete mode 100755 script/make_utils/fix_api_readme_reference.sh delete mode 100755 script/make_utils/fix_md_to_html_conversion_from_sphinx_in_href.sh delete mode 100755 script/make_utils/sphinx_gitbook_admonitions.sh diff --git a/.gitignore b/.gitignore index 9c7dc1a3c..07e17e5dc 100644 --- a/.gitignore +++ b/.gitignore @@ -72,11 +72,6 @@ instance/ # Scrapy stuff: .scrapy -# Sphinx documentation -docs/_apidoc/ -docs/_build/ -docs-copy/ - # GitBook docs/references/api/.pages diff --git a/Makefile b/Makefile index b638f6566..998377d6d 100644 --- a/Makefile +++ b/Makefile @@ -401,43 +401,10 @@ docker_clean_volumes: .PHONY: docker_cv # Docker clean volumes docker_cv: docker_clean_volumes - .PHONY: docs_no_links # Build docs -docs_no_links: clean_docs check_docs_dollars - @# Rebuild the index from README.md, to have in the home of Sphinx a copy of README.md - echo " .. Warning, auto-generated by \`make docs\`, don\'t edit" > docs/index.rst - echo "" >> docs/index.rst - pandoc --from markdown --to rst docs/README.md >> docs/index.rst - @# To be sure there is a blank line at the end - echo "" >> docs/index.rst - cat docs/index.toc.txt >> docs/index.rst - @# Create _static if nothing is commited in it - mkdir -p docs/_static/ - @# Generate the auto summary of documentations - @# Cannot do without specifying top module currently with sphinx-apidoc - poetry run sphinx-apidoc --implicit-namespaces -o docs/_apidoc $(CONCRETE_PACKAGE_PATH) - @# Doing a copy of docs, where we modify files - rm -rf docs-copy - cp -r docs docs-copy - @# Admonitions - ./script/make_utils/sphinx_gitbook_admonitions.sh --gitbook_to_sphinx - @# Check that there is no more GitBook hint - ! grep -r "hint style" docs-copy - @# Replace $$, $/$ and /$$ by $ - ./script/make_utils/fix_double_dollars_issues_with_mdformat.sh docs-copy --single_dollar - @# Replace `href="*.md` patterns with `href="*.html` because Sphinx does not handle them - ./script/make_utils/fix_md_to_html_conversion_from_sphinx_in_href.sh docs-copy - @# Replace `references/api/README.md` with `_apidoc/modules.html`. - ./script/make_utils/fix_api_readme_reference.sh docs-copy - @# Fix not-compatible paths - ./script/make_utils/fix_gitbook_paths.sh docs-copy - @# Docs - cd docs-copy && poetry run "$(MAKE)" html SPHINXOPTS='-W --keep-going' - @# Copy images from GitBook - cp docs/.gitbook/assets/*.png docs-copy/_build/html/_images - cp -r use_case_examples docs-copy/_build/ - cp -r docs-copy/_build docs/ - rm -rf docs-copy +docs_no_links: check_docs_dollars + @# Fix not-compatible paths that are sometimes generated by GitBook edits + ./script/make_utils/fix_gitbook_paths.sh docs .PHONY: docs # Build docs and check links docs: docs_no_links @@ -460,9 +427,6 @@ check_apidocs: @# Check nothing has changed ./script/doc_utils/check_apidocs.sh -.PHONY: clean_docs # Clean docs build directory -clean_docs: - rm -rf docs/_apidoc docs/_build .PHONY: check_docs_dollars # Check that latex equations are enclosed by double dollar signs check_docs_dollars: @@ -472,13 +436,6 @@ check_docs_dollars: # show properly in gitbook ./script/make_utils/check_double_dollars_in_doc.sh -.PHONY: open_docs # Launch docs in a browser -open_docs: - python3 -m webbrowser -t "file://${PWD}/docs/_build/html/index.html" - -.PHONY: docs_and_open # Make docs and open them in a browser -docs_and_open: docs open_docs - .PHONY: pydocstyle # Launch syntax checker on source code documentation pydocstyle: @# From http://www.pydocstyle.org/en/stable/error_codes.html @@ -757,7 +714,7 @@ check_links: @# To avoid some issues with priviledges and linkcheckmd find docs/ -name "*.md" -type f | xargs chmod +r - @# Run linkcheck on mardown files. It is mainly used for web links and _api_doc (Sphinx) + @# Run linkcheck on mardown files. It is mainly used for web links poetry run python -m linkcheckmd docs -local poetry run python -m linkcheckmd README.md @@ -774,20 +731,13 @@ check_links: @# --ignore-url=https://www.openml.org: this website returns a lots of timeouts @# --ignore-url=https://github.com/zama-ai/concrete-ml-internal/issues: because issues are @# private - @# --ignore-url=.gitbook/assets : some gitbook functionalities use links to images to include - @# them in the docs. But sphinx does not copy such as images to the _build dir since - @# they are not included by image tags or sphinx image annotations. We ignore links - @# to gitbook images in the HTML checker. But the images are actually checked by the - @# markdown link checker, `local_link_check.sh`. @# --ignore-url=https://arxiv.org: this website returns a lots of timeouts poetry run linkchecker docs --check-extern \ --no-warnings \ - --ignore-url=_static/webpack-macros.html \ --ignore-url=https://www.conventionalcommits.org/en/v1.0.0/ \ --ignore-url=https://www.openml.org \ --ignore-url=https://github.com/zama-ai/concrete-ml-internal/issues \ - --ignore-url=https://arxiv.org \ - --ignore-url=.gitbook/assets + --ignore-url=https://arxiv.org .PHONY: actionlint # Linter for our github actions actionlint: diff --git a/deps_licenses/licenses_linux_user.txt b/deps_licenses/licenses_linux_user.txt index 5cbb4766a..710fc5468 100644 --- a/deps_licenses/licenses_linux_user.txt +++ b/deps_licenses/licenses_linux_user.txt @@ -2,8 +2,8 @@ Name, Version, License GitPython, 3.1.41, BSD License PyYAML, 6.0.1, MIT License anyio, 3.7.1, MIT License -boto3, 1.34.84, Apache Software License -botocore, 1.34.84, Apache Software License +boto3, 1.34.88, Apache Software License +botocore, 1.34.88, Apache Software License brevitas, 0.8.0, UNKNOWN certifi, 2023.7.22, Mozilla Public License 2.0 (MPL 2.0) charset-normalizer, 3.3.2, MIT License @@ -12,7 +12,7 @@ coloredlogs, 15.0.1, MIT License concrete-python, 2.6.0rc1, BSD-3-Clause dependencies, 2.0.1, BSD License dill, 0.3.8, BSD License -exceptiongroup, 1.2.0, MIT License +exceptiongroup, 1.2.1, MIT License fastapi, 0.103.2, MIT License filelock, 3.13.4, The Unlicense (Unlicense) flatbuffers, 24.3.25, Apache Software License @@ -42,7 +42,7 @@ onnxoptimizer, 0.3.13, Apache License v2.0 onnxruntime, 1.17.3, MIT License packaging, 24.0, Apache Software License; BSD License pandas, 2.0.3, BSD License -pluggy, 1.4.0, MIT License +pluggy, 1.5.0, MIT License protobuf, 3.20.3, BSD-3-Clause psutil, 5.9.8, BSD License pydantic, 1.10.15, MIT License @@ -51,7 +51,7 @@ pytest-json-report, 1.5.0, MIT pytest-metadata, 3.1.1, Mozilla Public License 2.0 (MPL 2.0) python-dateutil, 2.9.0.post0, Apache Software License; BSD License pytz, 2024.1, MIT License -regex, 2023.12.25, Apache Software License +regex, 2024.4.16, Apache Software License requests, 2.31.0, Apache Software License s3transfer, 0.10.1, Apache Software License safetensors, 0.4.3, Apache Software License @@ -67,14 +67,15 @@ starlette, 0.27.0, BSD License sympy, 1.12, BSD License tabulate, 0.8.10, MIT License threadpoolctl, 3.4.0, BSD License -tokenizers, 0.15.2, Apache Software License +tokenizers, 0.19.1, Apache Software License tomli, 2.0.1, MIT License torch, 1.13.1, BSD License tqdm, 4.66.2, MIT License; Mozilla Public License 2.0 (MPL 2.0) -transformers, 4.39.3, Apache Software License +transformers, 4.40.0, Apache Software License typing_extensions, 4.5.0, Python Software Foundation License tzdata, 2024.1, Apache Software License -urllib3, 2.2.1, MIT License +urllib3, 1.26.18, MIT License uvicorn, 0.21.1, BSD License xgboost, 1.6.2, Apache Software License z3-solver, 4.13.0.0, MIT License +zipp, 3.18.1, MIT License diff --git a/deps_licenses/licenses_linux_user.txt.md5 b/deps_licenses/licenses_linux_user.txt.md5 index 5ec742f86..9acf7be50 100644 --- a/deps_licenses/licenses_linux_user.txt.md5 +++ b/deps_licenses/licenses_linux_user.txt.md5 @@ -1 +1 @@ -180ea2b3232d89fc71be20d1707620b4 +e672d77021d3214dea6c135c6e33e9a4 diff --git a/docs/Makefile b/docs/Makefile deleted file mode 100644 index d4bb2cbb9..000000000 --- a/docs/Makefile +++ /dev/null @@ -1,20 +0,0 @@ -# Minimal makefile for Sphinx documentation -# - -# You can set these variables from the command line, and also -# from the environment for the first two. -SPHINXOPTS ?= -SPHINXBUILD ?= sphinx-build -SOURCEDIR = . -BUILDDIR = _build - -# Put it first so that "make" without argument is like "make help". -help: - @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) - -.PHONY: help Makefile - -# Catch-all target: route all unknown targets to Sphinx using the new -# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). -%: Makefile - @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) diff --git a/docs/conf.py b/docs/conf.py deleted file mode 100644 index 88215da4e..000000000 --- a/docs/conf.py +++ /dev/null @@ -1,140 +0,0 @@ -# Configuration file for the Sphinx documentation builder. -# -# This file only contains a selection of the most common options. For a full -# list see the documentation: -# https://www.sphinx-doc.org/en/master/usage/configuration.html - -# -- Path setup -------------------------------------------------------------- - -# If extensions (or modules to document with autodoc) are in another directory, -# add these directories to sys.path here. If the directory is relative to the -# documentation root, use os.path.abspath to make it absolute, like shown here. -# -import os - -# import sys - -# sys.path.insert(0, os.path.abspath(".")) - - -# -- Project information ----------------------------------------------------- - -project = "Concrete ML" -copyright = "2022-2023, Zama" -author = "Zama" -description = "Zama Concrete ML" -root_url = os.environ.get("DOC_ROOT_URL", "/concrete-ml") -root_url = root_url if root_url.endswith("/") else root_url + "/" - -# The full version, including alpha/beta/rc tags -release = "1.5.0" - - -# -- General configuration --------------------------------------------------- - -# Add any Sphinx extension module names here, as strings. They can be -# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom -# ones. -extensions = [ - "myst_parser", - "sphinx_copybutton", - "nbsphinx", - "sphinx.ext.napoleon", - # Comment this extension when not at release time - "sphinx.ext.viewcode", -] - -myst_enable_extensions = [ - "amsmath", - "colon_fence", - "dollarmath", -] - -# List of patterns, relative to source directory, that match files and -# directories to ignore when looking for source files. -# This pattern also affects html_static_path and html_extra_path. -exclude_patterns = [ - "_build", - "Thumbs.db", - ".DS_Store", - "SUMMARY.md", - "advanced_examples/*.ipynb", - "references/api/*.md", - "conventions.md", -] - -# Group member variables and methods separately (not alphabetically) -autodoc_member_order = "groupwise" - -# -- Options for nbsphinx ---------------------------------------------------- - -nbsphinx_codecell_lexer = "ipython3" - -# -- Options for HTML output ------------------------------------------------- - -# The theme to use for HTML and HTML Help pages. See the documentation for -# a list of built-in themes. -# - -# We may be back with sphinx_zama_theme, as soon as it provides something which is very close to -# GitBook look, or keep ReadsTheDocs theme e.g., if we want to push docs there -html_theme = "sphinx_rtd_theme" - -# Add any paths that contain custom static files (such as style sheets) here, -# relative to this directory. They are copied after the built-in static files, -# so a file named "default.css" will overwrite the built-in "default.css". -html_static_path = ["_static"] - -# Were options for sphinx_zama_theme theme -# html_theme_options = { -# "github_url": "https://github.com/zama-ai/concrete-ml", -# "twitter_url": "https://twitter.com/zama_fhe", -# "icon_links": [ -# { -# "name": "Discourse", -# "url": "https://community.zama.ai/c/concrete-ml", -# "icon": "fab fa-discourse", -# } -# ], -# "navigation_depth": 2, -# "collapse_navigation": True, -# "google_analytics_id": "G-XRM93J9QBW", -# } - -html_theme_options = { - "analytics_id": "G-XRM93J9QBW", - # 'analytics_anonymize_ip': False, - # 'logo_only': False, - # 'display_version': True, - # 'prev_next_buttons_location': 'bottom', - # 'style_external_links': False, - # 'vcs_pageview_mode': '', - # 'style_nav_header_background': 'white', - # Toc options - "collapse_navigation": True, - "sticky_navigation": False, - "navigation_depth": 0, - "includehidden": True, - "titles_only": True, -} -html_context = { - "show_version": True, - "author": author, - "description": description, - "language": "en", - "versions_url": "#", -} -html_title = "%s Manual" % (project) -html_show_sphinx = False - -# Uncomment for test -# html_extra_path = ["versions.json", "alert.html"] - - -def setup(app): - html_init = f"const CURRENT_VERSION = {release!r};" - html_init += f"const ROOT_URL = {root_url!r};" - app.add_js_file(None, body=html_init, priority=100) - - -suppress_warnings = ["myst.xref_missing"] diff --git a/docs/developer/documenting.md b/docs/developer/documenting.md index 77ceff749..0309df8d4 100644 --- a/docs/developer/documenting.md +++ b/docs/developer/documenting.md @@ -5,25 +5,3 @@ Documentation with GitBook is done mainly by pushing content on GitHub. GitBook then pulls the docs from the repository and publishes. In most cases, GitBook is just a mirror of what is available in GitHub. There are, however, some use-cases where documentation can be modified directly in GitBook (and, then, push the modifications to GitHub), for example when the documentation is modified by a person outside of Zama. In this case, a GitHub branch is created, and a GitHub space is associated to it: modifications are done in this space and automatically pushed to the branch. Once the modifications have been completed, one can simply create a pull-request, to finally merge modifications on the main branch. - -## Using Sphinx - -Documentation can alternatively be built using Sphinx: - -```shell -make docs -``` - -The documentation contains both files written by hand by developers (the .md files) and files automatically created by parsing the source files. - -Then to open it, go to `docs/_build/html/index.html` or use the follwing command: - -```shell -make open_docs -``` - -To build and open the docs at the same time, use: - -```shell -make docs_and_open -``` diff --git a/docs/index.toc.txt b/docs/index.toc.txt deleted file mode 100644 index b13ab4d4a..000000000 --- a/docs/index.toc.txt +++ /dev/null @@ -1,101 +0,0 @@ -.. toctree:: - :maxdepth: 0 - :hidden: - - README.md - -.. toctree:: - :maxdepth: 0 - :hidden: - :caption: Getting Started - - getting-started/README.md - getting-started/pip_installing.md - getting-started/concepts.md - getting-started/cloud.md - -.. toctree:: - :maxdepth: 0 - :hidden: - :caption: Built-in Models - - built-in-models/linear.md - built-in-models/tree.md - built-in-models/neural-networks.md - built-in-models/nearest-neighbors.md - built-in-models/encrypted_dataframe.md - references/pandas.md - built-in-models/training.md - -.. toctree:: - :maxdepth: 0 - :hidden: - :caption: Deep Learning - - deep-learning/torch_support.md - deep-learning/onnx_support.md - deep-learning/fhe_friendly_models.md - deep-learning/fhe_assistant.md - deep-learning/optimizing_inference.md - -.. toctree:: - :maxdepth: 0 - :hidden: - :caption: Guides - - guides/prediction_with_fhe.md - guides/client_server.md - guides/hybrid-models.md - guides/serialization.md - -.. toctree:: - :maxdepth: 0 - :hidden: - :caption: Tutorials - - tutorials/showcase.md - tutorials/ml_examples.md - tutorials/dl_examples.md - -.. toctree:: - :maxdepth: 1 - :hidden: - :caption: API - - API <_apidoc/modules.rst> - -.. toctree:: - :maxdepth: 0 - :hidden: - :caption: Explanations - - explanations/security_and_correctness.md - explanations/quantization.md - explanations/pruning.md - explanations/compilation.md - explanations/advanced_features.md - -.. toctree:: - :maxdepth: 1 - :hidden: - :caption: Project Architecture - - explanations/inner-workings/README.md - explanations/inner-workings/onnx_pipeline.md - explanations/inner-workings/quantization_internal.md - explanations/inner-workings/fhe-op-graphs.md - explanations/inner-workings/external_libraries.md - -.. toctree:: - :maxdepth: 0 - :hidden: - :caption: Developer - - developer/project_setup.md - developer/docker_setup.md - developer/documenting.md - developer/debug_support_submit_issues.md - developer/contributing.md - developer/support_new_onnx_node.md - - diff --git a/docs/make.bat b/docs/make.bat deleted file mode 100644 index 922152e96..000000000 --- a/docs/make.bat +++ /dev/null @@ -1,35 +0,0 @@ -@ECHO OFF - -pushd %~dp0 - -REM Command file for Sphinx documentation - -if "%SPHINXBUILD%" == "" ( - set SPHINXBUILD=sphinx-build -) -set SOURCEDIR=. -set BUILDDIR=_build - -if "%1" == "" goto help - -%SPHINXBUILD% >NUL 2>NUL -if errorlevel 9009 ( - echo. - echo.The 'sphinx-build' command was not found. Make sure you have Sphinx - echo.installed, then set the SPHINXBUILD environment variable to point - echo.to the full path of the 'sphinx-build' executable. Alternatively you - echo.may add the Sphinx directory to PATH. - echo. - echo.If you don't have Sphinx installed, grab it from - echo.http://sphinx-doc.org/ - exit /b 1 -) - -%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% -goto end - -:help -%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% - -:end -popd diff --git a/poetry.lock b/poetry.lock index dd89d298a..7a40a6902 100644 --- a/poetry.lock +++ b/poetry.lock @@ -13,87 +13,87 @@ files = [ [[package]] name = "aiohttp" -version = "3.9.4" +version = "3.9.5" description = "Async http client/server framework (asyncio)" optional = false python-versions = ">=3.8" files = [ - {file = "aiohttp-3.9.4-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:76d32588ef7e4a3f3adff1956a0ba96faabbdee58f2407c122dd45aa6e34f372"}, - {file = "aiohttp-3.9.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:56181093c10dbc6ceb8a29dfeea1e815e1dfdc020169203d87fd8d37616f73f9"}, - {file = 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"sigopt", "tensorflow (>=2.6,<2.16)", "tensorflow-text (<2.16)", "tf2onnx", "timm", "tokenizers (>=0.19,<0.20)", "torch", "torchaudio", "torchvision"] docs-specific = ["hf-doc-builder"] flax = ["flax (>=0.4.1,<=0.7.0)", "jax (>=0.4.1,<=0.4.13)", "jaxlib (>=0.4.1,<=0.4.13)", "optax (>=0.0.8,<=0.1.4)"] flax-speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)"] @@ -7077,16 +6998,16 @@ serving = ["fastapi", "pydantic", "starlette", "uvicorn"] sigopt = ["sigopt"] sklearn = ["scikit-learn"] speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)", "torchaudio"] -testing = ["GitPython (<3.1.19)", "beautifulsoup4", "cookiecutter (==1.7.3)", "datasets (!=2.5.0)", "dill (<0.3.5)", "evaluate (>=0.2.0)", "faiss-cpu", "hf-doc-builder (>=0.3.0)", "nltk", "parameterized", "protobuf", "psutil", "pydantic", "pytest (>=7.2.0,<8.0.0)", "pytest-timeout", "pytest-xdist", "rjieba", "rouge-score (!=0.0.7,!=0.0.8,!=0.1,!=0.1.1)", "ruff (==0.1.5)", "sacrebleu (>=1.4.12,<2.0.0)", "sacremoses", "tensorboard", "timeout-decorator"] +testing = ["GitPython (<3.1.19)", "beautifulsoup4", "cookiecutter (==1.7.3)", "datasets (!=2.5.0)", "dill (<0.3.5)", "evaluate (>=0.2.0)", "faiss-cpu", "hf-doc-builder (>=0.3.0)", "nltk", "parameterized", "protobuf", "psutil", "pydantic", "pytest (>=7.2.0,<8.0.0)", "pytest-timeout", "pytest-xdist", "rjieba", "rouge-score (!=0.0.7,!=0.0.8,!=0.1,!=0.1.1)", "ruff (==0.1.5)", "sacrebleu (>=1.4.12,<2.0.0)", "sacremoses", "sentencepiece (>=0.1.91,!=0.1.92)", "tensorboard", "timeout-decorator"] tf = ["keras-nlp (>=0.3.1)", "onnxconverter-common", "tensorflow (>=2.6,<2.16)", "tensorflow-text (<2.16)", "tf2onnx"] tf-cpu = ["keras-nlp (>=0.3.1)", "onnxconverter-common", "tensorflow-cpu (>=2.6,<2.16)", "tensorflow-text (<2.16)", "tf2onnx"] tf-speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)"] timm = ["timm"] -tokenizers = ["tokenizers (>=0.14,<0.19)"] +tokenizers = ["tokenizers (>=0.19,<0.20)"] torch = ["accelerate (>=0.21.0)", "torch"] torch-speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)", "torchaudio"] torch-vision = ["Pillow (>=10.0.1,<=15.0)", "torchvision"] -torchhub = ["filelock", "huggingface-hub (>=0.19.3,<1.0)", "importlib-metadata", "numpy (>=1.17)", "packaging (>=20.0)", "protobuf", "regex (!=2019.12.17)", "requests", "sentencepiece (>=0.1.91,!=0.1.92)", "tokenizers (>=0.14,<0.19)", "torch", "tqdm (>=4.27)"] +torchhub = ["filelock", "huggingface-hub (>=0.19.3,<1.0)", "importlib-metadata", "numpy (>=1.17)", "packaging (>=20.0)", "protobuf", "regex (!=2019.12.17)", "requests", "sentencepiece (>=0.1.91,!=0.1.92)", "tokenizers (>=0.19,<0.20)", "torch", "tqdm (>=4.27)"] video = ["av (==9.2.0)", "decord (==0.6.0)"] vision = ["Pillow (>=10.0.1,<=15.0)"] @@ -7607,4 +7528,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.8.1,<3.11" -content-hash = "0bdd58e03389819d8a074956b4a14f1e2c22541697d64c17276c432313295cc5" +content-hash = "e4555882abf99305a3e42754afe6de09e177de9948e9781719b7533b7e9bfac8" diff --git a/pyproject.toml b/pyproject.toml index d2b885001..6d782d618 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -108,13 +108,9 @@ lazydocs = "^0.4.0" seaborn = "^0.12.0" mistletoe = "^0.9.0" ruff = "^0.0.191" -nbsphinx = "0.8.12" -sphinx-rtd-theme = "1.2.0" myst_parser = "0.19.1" -sphinx_copybutton = "0.5.1" flake8-bugbear = "23.2.13" flake8 = "6.0.0" -sphinx = "6.1.3" # The following was inspired from https://github.com/python-poetry/poetry/issues/8271 # Note: upgrading tensorflow to >= 2.14 requires dropping support for Python 3.8 tensorflow = {version = "2.13.1"} @@ -149,7 +145,7 @@ filterwarnings = [ [tool.semantic_release] version_toml = "pyproject.toml:tool.poetry.version" -version_variable = "docs/conf.py:release,src/concrete/ml/version.py:__version__" +version_variable = "src/concrete/ml/version.py:__version__" upload_to_pypi = "False" changelog_sections = "breaking, feature, fix, documentation, performance" diff --git a/script/doc_utils/fix_api_readme_reference.py b/script/doc_utils/fix_api_readme_reference.py deleted file mode 100644 index 5d0d164cb..000000000 --- a/script/doc_utils/fix_api_readme_reference.py +++ /dev/null @@ -1,68 +0,0 @@ -"""Helper script to replace Replace `references/api/README.md` with `_apidoc/modules.html`.""" - -import argparse -import multiprocessing -import re -import sys -from pathlib import Path - - -def process_file(file_str: str) -> bool: - """Replace `references/api/README.md` with `_apidoc/modules.html`. - - Also changes "references/api" pattern to Sphinx's "_apidoc" - - Args: - file_str (str): the path to the file to process. - - Returns: - bool: True once done - """ - verbose = False - - file_path = Path(file_str).resolve() - file_path_output = Path(file_str).resolve() - - if verbose: - print(f"Fix api reference problems for {str(file_path)} into {str(file_path_output)}") - - api_pattern = "references/api/README.md" - apidoc_pattern = "_apidoc/modules.html" - - processed_content = "" - with open(file_path, "r", encoding="utf-8") as f: - - for line in f: - newline = re.sub(api_pattern, apidoc_pattern, line) - processed_content += newline - - with open(file_path_output, "w", encoding="utf-8") as fout: - print(processed_content, file=fout, end="") - - return True - - -def main(args): - """Entry point. - - Args: - args (List[str]): a list of arguments - """ - with multiprocessing.Pool(multiprocessing.cpu_count()) as pool: - res = pool.map(process_file, args.files) - # Exit 0 if all went well as True == 1 - sys.exit(not all(res)) - - -if __name__ == "__main__": - parser = argparse.ArgumentParser( - "Replace `references/api/README.md` with `_apidoc/modules.html`.", - allow_abbrev=False, - ) - - parser.add_argument( - "--files", type=str, nargs="+", required=True, help="The files to modify in place" - ) - - cli_args = parser.parse_args() - main(cli_args) diff --git a/script/doc_utils/fix_md_to_html_conversion_from_sphinx_in_href.py b/script/doc_utils/fix_md_to_html_conversion_from_sphinx_in_href.py deleted file mode 100644 index 3aaa6f1df..000000000 --- a/script/doc_utils/fix_md_to_html_conversion_from_sphinx_in_href.py +++ /dev/null @@ -1,68 +0,0 @@ -"""Helper script to replace `href="*.md` patterns with `href="*.html`.""" - -import argparse -import multiprocessing -import re -import sys -from pathlib import Path - - -def process_file(file_str: str) -> bool: - """Replace `href="*.md` patterns with `href="*.html` because Sphinx does not handle them. - - Args: - file_str (str): the path to the file to process. - - Returns: - bool: True once done - """ - verbose = False - - file_path = Path(file_str).resolve() - file_path_output = Path(file_str).resolve() - - if verbose: - print( - f"Fix 'md to html in href' problems for {str(file_path)} into {str(file_path_output)}" - ) - - md_pattern = r'href="([^"]*)\.md' - html_pattern = r'href="\1.html' - - processed_content = "" - with open(file_path, "r", encoding="utf-8") as f: - - for line in f: - newline = re.sub(md_pattern, html_pattern, line) - processed_content += newline - - with open(file_path_output, "w", encoding="utf-8") as fout: - print(processed_content, file=fout, end="") - - return True - - -def main(args): - """Entry point. - - Args: - args (List[str]): a list of arguments - """ - with multiprocessing.Pool(multiprocessing.cpu_count()) as pool: - res = pool.map(process_file, args.files) - # Exit 0 if all went well as True == 1 - sys.exit(not all(res)) - - -if __name__ == "__main__": - parser = argparse.ArgumentParser( - 'Replace `href="*.md` patterns with `href="*.html` because Sphinx does not handle them.', - allow_abbrev=False, - ) - - parser.add_argument( - "--files", type=str, nargs="+", required=True, help="The files to modify in place" - ) - - cli_args = parser.parse_args() - main(cli_args) diff --git a/script/doc_utils/sphinx_gitbook_admonitions.py b/script/doc_utils/sphinx_gitbook_admonitions.py deleted file mode 100644 index 010088051..000000000 --- a/script/doc_utils/sphinx_gitbook_admonitions.py +++ /dev/null @@ -1,128 +0,0 @@ -"""Helper script to change admonitions from sphinx-style to gitbook-style, and vice-versa.""" - -import argparse -import multiprocessing -import sys -from functools import partial -from pathlib import Path - - -def process_file(file_str: str, args=None): - """Change admonitions from sphinx-style to gitbook-style, and vice-versa. - - Args: - file_str (str): the path to the file to process. - args: the arguments of the call. - - Returns: - True if function succeeded - """ - verbose = False - - file_path = Path(file_str).resolve() - file_path_output = Path(file_str).resolve() - - if verbose: - print(f"Changing admonitions for {str(file_path)} into {str(file_path_output)}") - - # Available admonitions in GitBook: info, success, danger, warning - # Available admonitions in Sphinx: attention, caution, danger, error, hint, important, - # note, tip, warning - sphinx_to_gitbook_admonition = { - "attention": "warning", - "caution": "danger", - "danger": "danger", - "error": "danger", - "hint": "info", - "important": "info", - "note": "info", - "tip": "info", - "warning": "warning", - } - - gitbook_to_sphinx_admonition = { - "info": "note", - "success": "hint", - "danger": "danger", - "warning": "warning", - } - - admonition = "" - processed_content = "" - - with open(file_path, "r", encoding="utf-8") as f: - - for line in f: - - line = line.rstrip() - - if args.gitbook_to_sphinx: - # Gitbook to Sphinx - if admonition != "" and line.startswith("{% endhint %}"): - # Closing admonition - admonition = "" - processed_content += "```" - - elif line.startswith('{% hint style="'): - # Starting admonition - admonition = line.replace('{% hint style="', "").replace('" %}', "") - gitbook_admonition = gitbook_to_sphinx_admonition[admonition] - processed_content += "```{" + gitbook_admonition + "}" - - else: - processed_content += line - - else: - # Sphinx to Gitbook - if admonition != "" and line.startswith("```"): - # Closing admonition - admonition = "" - processed_content += "{% endhint %}" - - elif line.startswith("```{"): - # Starting admonition - admonition = line.replace("```{", "").replace("}", "") - gitbook_admonition = sphinx_to_gitbook_admonition[admonition] - processed_content += "{% hint style='" + gitbook_admonition + "' %}" - - else: - processed_content += line - - processed_content += "\n" - - with open(file_path_output, "w", encoding="utf-8") as fout: - print(processed_content, file=fout) - - return True - - -def main(args): - """Entry point. - - Args: - args: a Namespace object - - """ - with multiprocessing.Pool(multiprocessing.cpu_count()) as pool: - res = pool.map(partial(process_file, args=args), args.files) - # Exit 0 if all went well as True == 1 - sys.exit(not all(res)) - - -if __name__ == "__main__": - parser = argparse.ArgumentParser( - "Change admonitions from sphinx-style to gitbook-style, and vice-versa", allow_abbrev=False - ) - - parser.add_argument( - "--files", type=str, nargs="+", required=True, help="The files to modify in place" - ) - - parser.add_argument( - "--gitbook_to_sphinx", - action="store_true", - help="Do from gitbook to sphinx (default is sphinx to gitbook)", - ) - - cli_args = parser.parse_args() - main(cli_args) diff --git a/script/make_utils/fix_api_readme_reference.sh b/script/make_utils/fix_api_readme_reference.sh deleted file mode 100755 index 9cc7fefa7..000000000 --- a/script/make_utils/fix_api_readme_reference.sh +++ /dev/null @@ -1,10 +0,0 @@ -#!/usr/bin/env bash - -set -e -DIRECTORY=$1 - -MD_FILES=$(find "$DIRECTORY" -type f -name "index.rst") - -# Replace `references/api/README.md` with `_apidoc/modules.html`. -# shellcheck disable=SC2086 -poetry run python script/doc_utils/fix_api_readme_reference.py --files $MD_FILES diff --git a/script/make_utils/fix_md_to_html_conversion_from_sphinx_in_href.sh b/script/make_utils/fix_md_to_html_conversion_from_sphinx_in_href.sh deleted file mode 100755 index 83f87c3b7..000000000 --- a/script/make_utils/fix_md_to_html_conversion_from_sphinx_in_href.sh +++ /dev/null @@ -1,10 +0,0 @@ -#!/usr/bin/env bash - -set -e -DIRECTORY=$1 - -MD_FILES=$(find "$DIRECTORY" -type f -name "*.md") - -# Replace `href="*.md` patterns with `href="*.html` because Sphinx does not handle these -# shellcheck disable=SC2086 -poetry run python script/doc_utils/fix_md_to_html_conversion_from_sphinx_in_href.py --files $MD_FILES diff --git a/script/make_utils/sphinx_gitbook_admonitions.sh b/script/make_utils/sphinx_gitbook_admonitions.sh deleted file mode 100755 index 34ec744c5..000000000 --- a/script/make_utils/sphinx_gitbook_admonitions.sh +++ /dev/null @@ -1,9 +0,0 @@ -#!/usr/bin/env bash - -set -e -OPTIONS=$1 - -MD_FILES=$(find docs-copy -type f -name "*.md") - -# shellcheck disable=SC2086 -poetry run python script/doc_utils/sphinx_gitbook_admonitions.py --files $MD_FILES $OPTIONS