Deploying to gh-pages from @ 678b2ab 🚀

dev-doc/01-GettingStarted.html

@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7536,11 +7537,11 @@ <h1 id="1---Getting-Started">1 - Getting Started<a class="anchor-link" href="#1-
 <div class="jp-InputPrompt jp-InputArea-prompt">In [1]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">cartopy.crs</span> <span class="k">as</span> <span class="nn">ccrs</span>
-<span class="kn">import</span> <span class="nn">gplately</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.crs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">ccrs</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span>
 </pre></div>
 </div>
 </div>

dev-doc/02-PlateReconstructions.html

@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7535,19 +7536,19 @@ <h1 id="2---Plate-Reconstructions">2 - Plate Reconstructions<a class="anchor-lin
 <div class="jp-InputPrompt jp-InputArea-prompt">In [1]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">gplately</span>
-<span class="kn">from</span> <span class="nn">gplately</span> <span class="kn">import</span> <span class="n">pygplates</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">glob</span><span class="o">,</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">cartopy.crs</span> <span class="k">as</span> <span class="nn">ccrs</span>
-<span class="kn">import</span> <span class="nn">cartopy.mpl.gridliner</span> <span class="k">as</span> <span class="nn">grd</span>
-
-<span class="kn">from</span> <span class="nn">matplotlib.patches</span> <span class="kn">import</span> <span class="n">Patch</span>
-<span class="kn">from</span> <span class="nn">matplotlib.patches</span> <span class="kn">import</span> <span class="n">FancyArrowPatch</span>
-<span class="kn">from</span> <span class="nn">matplotlib.lines</span> <span class="kn">import</span> <span class="n">Line2D</span>
-
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">gplately</span><span class="w"> </span><span class="kn">import</span> <span class="n">pygplates</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">glob</span><span class="o">,</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.crs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">ccrs</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.mpl.gridliner</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">grd</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">matplotlib.patches</span><span class="w"> </span><span class="kn">import</span> <span class="n">Patch</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">matplotlib.patches</span><span class="w"> </span><span class="kn">import</span> <span class="n">FancyArrowPatch</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">matplotlib.lines</span><span class="w"> </span><span class="kn">import</span> <span class="n">Line2D</span>
+
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span>
 </pre></div>
 </div>
 </div>
@@ -8053,7 +8054,7 @@ <h3 id="Define-the-PlotTopologies-object">Define the <code>PlotTopologies</code>
 <div class="jp-InputPrompt jp-InputArea-prompt">In [13]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">moviepy.editor</span> <span class="k">as</span> <span class="nn">mpy</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">moviepy.editor</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">mpy</span>
 
 <span class="n">frame_list</span> <span class="o">=</span> <span class="p">[]</span>
 
@@ -8064,7 +8065,7 @@ <h3 id="Define-the-PlotTopologies-object">Define the <code>PlotTopologies</code>
 <span class="n">clip</span> <span class="o">=</span> <span class="n">mpy</span><span class="o">.</span><span class="n">ImageSequenceClip</span><span class="p">(</span><span class="n">frame_list</span><span class="p">,</span> <span class="n">fps</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
 <span class="n">clip</span><span class="o">.</span><span class="n">write_gif</span><span class="p">(</span><span class="s1">'/tmp/subd_mor_boundary_features.gif'</span><span class="p">)</span>
 
-<span class="kn">from</span> <span class="nn">IPython.display</span> <span class="kn">import</span> <span class="n">Image</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">IPython.display</span><span class="w"> </span><span class="kn">import</span> <span class="n">Image</span>
 <span class="nb">print</span><span class="p">(</span><span class="s1">'The movie will show up in a few seconds. Please be patient...'</span><span class="p">)</span>
 <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="s1">'/tmp/subd_mor_boundary_features.gif'</span><span class="p">,</span><span class="s1">'rb'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
     <span class="n">display</span><span class="p">(</span><span class="n">Image</span><span class="p">(</span><span class="n">data</span><span class="o">=</span><span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">(),</span> <span class="nb">format</span><span class="o">=</span><span class="s1">'png'</span><span class="p">,</span> <span class="n">width</span> <span class="o">=</span> <span class="mi">2000</span><span class="p">,</span> <span class="n">height</span> <span class="o">=</span> <span class="mi">500</span><span class="p">))</span>

dev-doc/03-WorkingWithPoints.html

@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7537,12 +7538,12 @@ <h1 id="3---Working-with-points">3 - Working with points<a class="anchor-link" h
 <div class="jp-InputPrompt jp-InputArea-prompt">In [ ]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">pandas</span> <span class="k">as</span> <span class="nn">pd</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">gplately</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">cartopy.crs</span> <span class="k">as</span> <span class="nn">ccrs</span>
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">pandas</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">pd</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.crs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">ccrs</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span>
 </pre></div>
 </div>
 </div>
@@ -7797,7 +7798,7 @@ <h2 id="Reconstruct-PBDB-data-with-GPlately">Reconstruct PBDB data with GPlately
 <div class="jp-InputPrompt jp-InputArea-prompt">In [8]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">stripy</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">stripy</span>
 
 <span class="n">mesh</span> <span class="o">=</span> <span class="n">stripy</span><span class="o">.</span><span class="n">spherical_meshes</span><span class="o">.</span><span class="n">icosahedral_mesh</span><span class="p">(</span><span class="n">refinement_levels</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span> <span class="n">tree</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
 </pre></div>

dev-doc/04-VelocityBasics.html

@@ -7312,6 +7312,7 @@
                     processEnvironments: true
                 },
                 displayAlign: 'center',
+                messageStyle: 'none',
                 CommonHTML: {
                     linebreaks: {
                     automatic: true
@@ -7529,15 +7530,15 @@ <h1 id="4---Velocity-Basics">4 - Velocity Basics<a class="anchor-link" href="#4-
 <div class="jp-InputPrompt jp-InputArea-prompt">In [ ]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">tempfile</span>
-
-<span class="kn">import</span> <span class="nn">cartopy.crs</span> <span class="k">as</span> <span class="nn">ccrs</span>
-<span class="kn">import</span> <span class="nn">gplately</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">matplotlib.colors</span> <span class="kn">import</span> <span class="n">Normalize</span>
-<span class="kn">from</span> <span class="nn">plate_model_manager</span> <span class="kn">import</span> <span class="n">PlateModelManager</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">os</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">tempfile</span>
+
+<span class="kn">import</span><span class="w"> </span><span class="nn">cartopy.crs</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">ccrs</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">gplately</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">matplotlib.pyplot</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">plt</span>
+<span class="kn">import</span><span class="w"> </span><span class="nn">numpy</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">np</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">matplotlib.colors</span><span class="w"> </span><span class="kn">import</span> <span class="n">Normalize</span>
+<span class="kn">from</span><span class="w"> </span><span class="nn">plate_model_manager</span><span class="w"> </span><span class="kn">import</span> <span class="n">PlateModelManager</span>
 </pre></div>
 </div>
 </div>
@@ -7906,7 +7907,7 @@ <h3 id="Visualising-Points-object-velocity-data:-Scatterplot">Visualising <code>
 <div class="jp-InputPrompt jp-InputArea-prompt">In [10]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">generate_frame</span><span class="p">(</span><span class="n">time</span><span class="p">,</span> <span class="n">output_dir</span><span class="p">):</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="k">def</span><span class="w"> </span><span class="nf">generate_frame</span><span class="p">(</span><span class="n">time</span><span class="p">,</span> <span class="n">output_dir</span><span class="p">):</span>
     <span class="c1"># Get all point velocities and their magnitudes</span>
     <span class="n">vel_x</span><span class="p">,</span> <span class="n">vel_y</span> <span class="o">=</span> <span class="n">gpts</span><span class="o">.</span><span class="n">plate_velocity</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">time</span><span class="p">))</span>
     <span class="n">vel_mag</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">hypot</span><span class="p">(</span><span class="n">vel_x</span><span class="p">,</span> <span class="n">vel_y</span><span class="p">)</span>
@@ -7955,7 +7956,7 @@ <h3 id="Visualising-Points-object-velocity-data:-Scatterplot">Visualising <code>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
 <div class="highlight hl-ipython3"><pre><span></span><span class="k">try</span><span class="p">:</span>
-    <span class="kn">import</span> <span class="nn">moviepy.editor</span> <span class="k">as</span> <span class="nn">mpy</span>
+    <span class="kn">import</span><span class="w"> </span><span class="nn">moviepy.editor</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="nn">mpy</span>
 
     <span class="n">mpy_available</span> <span class="o">=</span> <span class="kc">True</span>
 <span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
@@ -7989,7 +7990,7 @@ <h3 id="Visualising-Points-object-velocity-data:-Scatterplot">Visualising <code>
             <span class="p">)</span>
         <span class="p">)</span>
 
-        <span class="kn">from</span> <span class="nn">IPython.display</span> <span class="kn">import</span> <span class="n">Image</span>
+        <span class="kn">from</span><span class="w"> </span><span class="nn">IPython.display</span><span class="w"> </span><span class="kn">import</span> <span class="n">Image</span>
         <span class="nb">print</span><span class="p">(</span><span class="s1">'The movie will show up in a few seconds. Please be patient...'</span><span class="p">)</span>
         <span class="k">with</span> <span class="nb">open</span><span class="p">(</span>
             <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
@@ -8215,7 +8216,7 @@ <h2 id="Plotting-a-velocity-streamplot">Plotting a velocity streamplot<a class="
 <div class="jp-InputPrompt jp-InputArea-prompt">In [15]:</div>
 <div class="jp-CodeMirrorEditor jp-Editor jp-InputArea-editor" data-type="inline">
 <div class="cm-editor cm-s-jupyter">
-<div class="highlight hl-ipython3"><pre><span></span><span class="k">def</span> <span class="nf">generate_frame</span><span class="p">(</span><span class="n">time</span><span class="p">,</span> <span class="n">output_dir</span><span class="p">):</span>
+<div class="highlight hl-ipython3"><pre><span></span><span class="k">def</span><span class="w"> </span><span class="nf">generate_frame</span><span class="p">(</span><span class="n">time</span><span class="p">,</span> <span class="n">output_dir</span><span class="p">):</span>
     <span class="n">vel_x</span><span class="p">,</span> <span class="n">vel_y</span> <span class="o">=</span> <span class="n">gpts</span><span class="o">.</span><span class="n">plate_velocity</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">time</span><span class="p">))</span>
     <span class="n">vel_x</span> <span class="o">*=</span> <span class="mi">10</span>
     <span class="n">vel_y</span> <span class="o">*=</span> <span class="mi">10</span>