add debug script

tests-dir/debug_utils/github_issue_287.py

@@ -0,0 +1,61 @@
+#!/usr/bin/env python3
+
+# this debugging script was created from NW's Jupyter notebook. Thank NW for providing us the code.
+
+import gplately
+from pathlib import Path
+import os
+import requests
+from plate_model_manager import PlateModelManager, PlateModel
+import xarray as xr
+
+workdir = "debug-folder-github-issue-287"
+Path(workdir).mkdir(parents=True, exist_ok=True)
+
+miocene_file = os.path.join(workdir, "miocene_topo_pollard_antscape_dolan_0.5x0.5.nc")
+
+if not os.path.isfile(miocene_file):
+    r = requests.get(
+        "https://repo.gplates.org/webdav/gplately-test-data/issue-287/miocene_topo_pollard_antscape_dolan_0.5x0.5.nc",
+        allow_redirects=True,
+    )
+    open(miocene_file, "wb").write(r.content)
+
+model_name = "merdith2021"
+try:
+    plate_model = PlateModelManager().get_model(model_name, data_dir=workdir)
+except:
+    plate_model = PlateModel(model_name, data_dir=workdir, readonly=True)
+
+if not plate_model:
+    raise Exception(f"Unable to get model({model_name})")
+
+rotation_files = plate_model.get_rotation_model()
+topology_files = plate_model.get_topologies()
+continent_files = plate_model.get_layer("ContinentalPolygons")
+
+r_model = gplately.PlateReconstruction(
+    rotation_model=rotation_files,
+    topology_features=topology_files,
+    static_polygons=plate_model.get_layer("StaticPolygons"),
+)
+
+raster = gplately.Raster(
+    data=miocene_file, time=15, plate_reconstruction=r_model, realign=True
+)
+reconstructed_raster = raster.reconstruct(
+    0, threads=4, partitioning_features=plate_model.get_layer("StaticPolygons")
+)
+outfile = os.path.join(workdir, "reconstructed_grid.nc")
+gplately.grids.write_netcdf_grid(
+    filename=outfile,
+    grid=reconstructed_raster._data,
+    extent=[
+        reconstructed_raster._lons.min(),
+        reconstructed_raster._lons.max(),
+        reconstructed_raster._lats.min(),
+        reconstructed_raster._lats.max(),
+    ],
+)
+# mio_nc2 = xr.open_dataset(outfile)
+# mio_nc2.z.plot()