ShinyArchR_testPull

DESCRIPTION

@@ -16,37 +16,64 @@ URL: https://www.ArchRProject.com
 RoxygenNote: 7.2.1
 Encoding: UTF-8
 Imports:
+    BiocGenerics,
+    Biostrings,
+    chromVAR,
+    chromVARmotifs,
+    ComplexHeatmap,
+    data.table,
     devtools,
+    GenomicRanges,
     ggplot2,
-    SummarizedExperiment,
-    data.table,
-    Matrix,
-    rhdf5,
+    ggrepel,
+    gridExtra,
+    gtable,
+    gtools,
+    harmony,
     magrittr,
-    S4Vectors (>= 0.9.25),
-    BiocGenerics,
-    Rcpp (>= 0.12.16),
-    RcppArmadillo,
+    Matrix,
     matrixStats,
-    sparseMatrixStats,
-    plyr,
-    nabor,
     motifmatchr,
-    chromVAR,
-    uwot,
-    ggrepel,
+    nabor,
+    plyr,
+    presto,
+    Rcpp (>= 0.12.16),
+    RcppArmadillo,
+    rhdf5,
     Rsamtools,
-    gtable,
-    gtools,
+    S4Vectors (>= 0.9.25),
+    Seurat,
+    SeuratObject,
+    sparseMatrixStats,
     stringr,
-    grid,
-    gridExtra,
-    Biostrings,
-    ComplexHeatmap,
-    GenomicRanges,
-    presto,
-    harmony
+    SummarizedExperiment,
+    uwot
 Depends:
+Suggests:
+    Cairo,
+    DESeq2,
+    edgeR,
+    GenomicFeatures,
+    ggridges,
+    ggseqlogo,
+    hexbin,
+    jpeg,
+    leiden,
+    limma,
+    monocle3,
+    pdftools,
+    pheatmap,
+    rhandsontable,
+    scran,
+    shiny,
+    shinythemes,
+    slingshot,
+    testthat
+Remotes:
+    GreenleafLab/chromVARmotifs,
+    cole-trapnell-lab/monocle3,
+    immunogenomics/presto
+biocViews:
 Collate: 
     'AllClasses.R'
     'AnnotationGenome.R'
@@ -91,6 +118,7 @@ Collate:
     'RcppExports.R'
     'ReproduciblePeakSet.R'
     'SparseUtils.R'
+    'ShinyArchRExports.R'
     'Trajectory.R'
     'ValidationUtils.R'
-    'VisualizeData.R'
+    'VisualizeData.R'