Deploying to gh-pages from @ 2aa8f6f 🚀

Parallel-in-Time · Sep 24, 2023 · 445df88 · 445df88
1 parent c0baa43
commit 445df88
Show file tree

Hide file tree

Showing 314 changed files with 908 additions and 852 deletions.
diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
diff --git a/.doctrees/projects/Hamiltonian.doctree b/.doctrees/projects/Hamiltonian.doctree
diff --git a/.doctrees/projects/doc_fput.doctree b/.doctrees/projects/doc_fput.doctree
diff --git a/.doctrees/projects/doc_matrixPFASST_propagator.doctree b/.doctrees/projects/doc_matrixPFASST_propagator.doctree
diff --git a/.doctrees/projects/matrixPFASST.doctree b/.doctrees/projects/matrixPFASST.doctree
diff --git a/.doctrees/pySDC/implementations.problem_classes.nonlinear_ODE_1.doctree b/.doctrees/pySDC/implementations.problem_classes.nonlinear_ODE_1.doctree
diff --git a/.doctrees/tutorial/doc_step_2_C.doctree b/.doctrees/tutorial/doc_step_2_C.doctree
diff --git a/.doctrees/tutorial/doc_step_3_B.doctree b/.doctrees/tutorial/doc_step_3_B.doctree
diff --git a/.doctrees/tutorial/doc_step_4_D.doctree b/.doctrees/tutorial/doc_step_4_D.doctree
diff --git a/.doctrees/tutorial/doc_step_7_A.doctree b/.doctrees/tutorial/doc_step_7_A.doctree
diff --git a/.doctrees/tutorial/doc_step_7_B.doctree b/.doctrees/tutorial/doc_step_7_B.doctree
diff --git a/.doctrees/tutorial/doc_step_7_C.doctree b/.doctrees/tutorial/doc_step_7_C.doctree
diff --git a/.doctrees/tutorial/doc_step_8_C.doctree b/.doctrees/tutorial/doc_step_8_C.doctree
diff --git a/.doctrees/tutorial/step_2.doctree b/.doctrees/tutorial/step_2.doctree
diff --git a/.doctrees/tutorial/step_3.doctree b/.doctrees/tutorial/step_3.doctree
diff --git a/.doctrees/tutorial/step_4.doctree b/.doctrees/tutorial/step_4.doctree
diff --git a/.doctrees/tutorial/step_7.doctree b/.doctrees/tutorial/step_7.doctree
diff --git a/.doctrees/tutorial/step_8.doctree b/.doctrees/tutorial/step_8.doctree
diff --git a/_images/timings_SDC_variants_Fisher.png b/_images/timings_SDC_variants_Fisher.png
diff --git a/_images/timings_SDC_variants_GrayScott.png b/_images/timings_SDC_variants_GrayScott.png
diff --git a/_modules/implementations/problem_classes/nonlinear_ODE_1.html b/_modules/implementations/problem_classes/nonlinear_ODE_1.html
@@ -54,7 +54,7 @@ <h1>Source code for implementations.problem_classes.nonlinear_ODE_1</h1><div cla
 <span class="sd">    given by</span>
 
 <span class="sd">    .. math::</span>
-<span class="sd">        \frac{du(t)}{dt} = \sqrt(1 - u(t))</span>
+<span class="sd">        \frac{du(t)}{dt} = \sqrt{1 - u(t)}</span>
 
 <span class="sd">    with initial condition :math:`u(0) = 0`. The exact solution is</span>
 
@@ -71,6 +71,13 @@ <h1>Source code for implementations.problem_classes.nonlinear_ODE_1</h1><div cla
 <span class="sd">        Tolerance for Newton&#39;s method to terminate.</span>
 <span class="sd">    stop_at_nan : bool, optional</span>
 <span class="sd">        Indicates that Newton solver has to stop if ``nan`` values arise.</span>
+
+<span class="sd">    Attributes</span>
+<span class="sd">    ----------</span>
+<span class="sd">    newton_itercount : int</span>
+<span class="sd">        Counts the Newton iterations.</span>
+<span class="sd">    newton_ncalls : int</span>
+<span class="sd">        Counts calls of Newton method.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="n">dtype_u</span> <span class="o">=</span> <span class="n">mesh</span>
@@ -83,6 +90,9 @@ <h1>Source code for implementations.problem_classes.nonlinear_ODE_1</h1><div cla
             <span class="s1">&#39;u0&#39;</span><span class="p">,</span> <span class="s1">&#39;newton_maxiter&#39;</span><span class="p">,</span> <span class="s1">&#39;newton_tol&#39;</span><span class="p">,</span> <span class="s1">&#39;stop_at_nan&#39;</span><span class="p">,</span> <span class="n">localVars</span><span class="o">=</span><span class="nb">locals</span><span class="p">(),</span> <span class="n">readOnly</span><span class="o">=</span><span class="kc">True</span>
         <span class="p">)</span>
 
+        <span class="bp">self</span><span class="o">.</span><span class="n">newton_itercount</span> <span class="o">=</span> <span class="mi">0</span>
+        <span class="bp">self</span><span class="o">.</span><span class="n">newton_ncalls</span> <span class="o">=</span> <span class="mi">0</span>
+
 <div class="viewcode-block" id="nonlinear_ODE_1.u_exact">
 <a class="viewcode-back" href="../../../pySDC/implementations.problem_classes.nonlinear_ODE_1.html#implementations.problem_classes.nonlinear_ODE_1.nonlinear_ODE_1.u_exact">[docs]</a>
     <span class="k">def</span> <span class="nf">u_exact</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t</span><span class="p">):</span>
@@ -174,13 +184,17 @@ <h1>Source code for implementations.problem_classes.nonlinear_ODE_1</h1><div cla
             <span class="c1"># increase iteration count</span>
             <span class="n">n</span> <span class="o">+=</span> <span class="mi">1</span>
 
+            <span class="bp">self</span><span class="o">.</span><span class="n">newton_itercount</span> <span class="o">+=</span> <span class="mi">1</span>
+
         <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">res</span><span class="p">)</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">stop_at_nan</span><span class="p">:</span>
             <span class="k">raise</span> <span class="n">ProblemError</span><span class="p">(</span><span class="s1">&#39;Newton got nan after </span><span class="si">%i</span><span class="s1"> iterations, aborting...&#39;</span> <span class="o">%</span> <span class="n">n</span><span class="p">)</span>
         <span class="k">elif</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">res</span><span class="p">):</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="s1">&#39;Newton got nan after </span><span class="si">%i</span><span class="s1"> iterations...&#39;</span> <span class="o">%</span> <span class="n">n</span><span class="p">)</span>
 
         <span class="k">if</span> <span class="n">n</span> <span class="o">==</span> <span class="bp">self</span><span class="o">.</span><span class="n">newton_maxiter</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="n">ProblemError</span><span class="p">(</span><span class="s1">&#39;Newton did not converge after </span><span class="si">%i</span><span class="s1"> iterations, error is </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">res</span><span class="p">))</span>
+            <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="s1">&#39;Newton did not converge after </span><span class="si">%i</span><span class="s1"> iterations, error is </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">res</span><span class="p">))</span>
+
+        <span class="bp">self</span><span class="o">.</span><span class="n">newton_ncalls</span> <span class="o">+=</span> <span class="mi">1</span>
 
         <span class="k">return</span> <span class="n">u</span></div>
 </div>

diff --git a/coverage/coverage-badge.svg b/coverage/coverage-badge.svg
diff --git a/coverage/d_020efe120a771d8a_fput_py.html b/coverage/d_020efe120a771d8a_fput_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_020efe120a771d8a_hamiltonian_and_energy_output_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -328,7 +328,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_020efe120a771d8a_hamiltonian_and_energy_output_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
     </div>
 </footer>

diff --git a/coverage/d_020efe120a771d8a_hamiltonian_and_energy_output_py.html b/coverage/d_020efe120a771d8a_hamiltonian_and_energy_output_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_020efe120a771d8a_hamiltonian_output_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -196,7 +196,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_020efe120a771d8a_hamiltonian_output_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
     </div>
 </footer>

diff --git a/coverage/d_020efe120a771d8a_hamiltonian_output_py.html b/coverage/d_020efe120a771d8a_hamiltonian_output_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_020efe120a771d8a_harmonic_oscillator_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -170,7 +170,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_020efe120a771d8a_harmonic_oscillator_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
     </div>
 </footer>

diff --git a/coverage/d_020efe120a771d8a_harmonic_oscillator_py.html b/coverage/d_020efe120a771d8a_harmonic_oscillator_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_020efe120a771d8a_simple_problems_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -254,7 +254,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_020efe120a771d8a_simple_problems_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
     </div>
 </footer>

diff --git a/coverage/d_020efe120a771d8a_simple_problems_py.html b/coverage/d_020efe120a771d8a_simple_problems_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_020efe120a771d8a_solar_system_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -323,7 +323,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_020efe120a771d8a_solar_system_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
     </div>
 </footer>

diff --git a/coverage/d_020efe120a771d8a_solar_system_py.html b/coverage/d_020efe120a771d8a_solar_system_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_020efe120a771d8a_stop_at_error_hook_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -365,7 +365,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_020efe120a771d8a_stop_at_error_hook_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
     </div>
 </footer>

diff --git a/coverage/d_020efe120a771d8a_stop_at_error_hook_py.html b/coverage/d_020efe120a771d8a_stop_at_error_hook_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_74ce84641ea8e5a0_controller_MPI_scorep_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -117,7 +117,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_74ce84641ea8e5a0_controller_MPI_scorep_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
     </div>
 </footer>

diff --git a/coverage/d_064a9f2a35945611_FaultHooks_py.html b/coverage/d_064a9f2a35945611_FaultHooks_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_064a9f2a35945611_generate_statistics_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -135,7 +135,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_064a9f2a35945611_generate_statistics_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
     </div>
 </footer>

diff --git a/coverage/d_064a9f2a35945611_generate_statistics_py.html b/coverage/d_064a9f2a35945611_generate_statistics_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_064a9f2a35945611_implicit_sweeper_faults_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -485,7 +485,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_064a9f2a35945611_implicit_sweeper_faults_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
     </div>
 </footer>

diff --git a/coverage/d_064a9f2a35945611_implicit_sweeper_faults_py.html b/coverage/d_064a9f2a35945611_implicit_sweeper_faults_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_064a9f2a35945611_visualization_helper_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -416,7 +416,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_064a9f2a35945611_visualization_helper_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
     </div>
 </footer>

diff --git a/coverage/d_064a9f2a35945611_visualization_helper_py.html b/coverage/d_064a9f2a35945611_visualization_helper_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_a8a430cd9834ab6a_A_spatial_problem_setup_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -217,7 +217,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_a8a430cd9834ab6a_A_spatial_problem_setup_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
     </div>
 </footer>

diff --git a/coverage/d_0a363dd8c140c711_HookClass_DAE_py.html b/coverage/d_0a363dd8c140c711_HookClass_DAE_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_0a363dd8c140c711_ProblemDAE_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -173,7 +173,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_0a363dd8c140c711_ProblemDAE_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
     </div>
 </footer>

diff --git a/coverage/d_0a363dd8c140c711_ProblemDAE_py.html b/coverage/d_0a363dd8c140c711_ProblemDAE_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_0eb34c630be51b75_simple_DAE_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -114,7 +114,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_0eb34c630be51b75_simple_DAE_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.3.1">coverage.py v7.3.1</a>,
-            created at 2023-09-22 15:54 +0000
+            created at 2023-09-24 10:02 +0000
         </p>
     </div>
 </footer>