-
Notifications
You must be signed in to change notification settings - Fork 2
/
Copy pathNAMESPACE
109 lines (108 loc) · 3.13 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
# Generated by roxygen2: do not edit by hand
S3method(as.GenomicRanges,GRanges)
S3method(as.GenomicRanges,data.frame)
S3method(as.bedtorch_table,GRanges)
S3method(as.bedtorch_table,bedtorch_table)
S3method(as.bedtorch_table,data.frame)
S3method(cluster_bed,GRanges)
S3method(cluster_bed,bedtorch_table)
S3method(complement_bed,GRanges)
S3method(complement_bed,bedtorch_table)
S3method(exclude_bed,GRanges)
S3method(exclude_bed,bedtorch_table)
S3method(intersect_bed,GRanges)
S3method(intersect_bed,bedtorch_table)
S3method(jaccard_bed,GRanges)
S3method(jaccard_bed,bedtorch_table)
S3method(map_bed,GRanges)
S3method(map_bed,bedtorch_table)
S3method(merge_bed,GRanges)
S3method(merge_bed,bedtorch_table)
S3method(print,bedtorch_table)
S3method(reldist_bed,GRanges)
S3method(reldist_bed,bedtorch_table)
S3method(shuffle_bed,GRanges)
S3method(shuffle_bed,bedtorch_table)
S3method(slop_bed,GRanges)
S3method(slop_bed,bedtorch_table)
S3method(subtract_bed,GRanges)
S3method(subtract_bed,bedtorch_table)
S3method(write_bed,GRanges)
S3method(write_bed,data.table)
export(as.GenomicRanges)
export(as.bedtorch_table)
export(bedtorch_table)
export(cluster_bed)
export(complement_bed)
export(exclude_bed)
export(get_seqinfo)
export(intersect_bed)
export(jaccard_bed)
export(make_random_bed)
export(make_windows)
export(map_bed)
export(merge_bed)
export(read_bed)
export(read_metadata)
export(reldist_bed)
export(rollmean)
export(rollsum)
export(shuffle_bed)
export(slop_bed)
export(subtract_bed)
export(write_bed)
importFrom(GenomeInfoDb,`seqinfo<-`)
importFrom(GenomeInfoDb,`seqlevels<-`)
importFrom(GenomeInfoDb,seqinfo)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomicRanges,`mcols<-`)
importFrom(GenomicRanges,`ranges<-`)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,pintersect)
importFrom(GenomicRanges,ranges)
importFrom(GenomicRanges,width)
importFrom(Rcpp,sourceCpp)
importFrom(S4Vectors,from)
importFrom(S4Vectors,to)
importFrom(assertthat,are_equal)
importFrom(assertthat,assert_that)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,rbindlist)
importFrom(data.table,setDT)
importFrom(data.table,setkey)
importFrom(data.table,setnames)
importFrom(data.table,shift)
importFrom(dplyr,`%>%`)
importFrom(purrr,`%||%`)
importFrom(purrr,discard)
importFrom(purrr,keep)
importFrom(purrr,map)
importFrom(purrr,map_chr)
importFrom(purrr,map_dbl)
importFrom(purrr,map_int)
importFrom(purrr,map_lgl)
importFrom(purrr,pmap_chr)
importFrom(purrr,pmap_dfr)
importFrom(purrr,pwalk)
importFrom(purrr,walk)
importFrom(readr,read_lines)
importFrom(rlang,is_character)
importFrom(rlang,is_integer)
importFrom(rlang,is_null)
importFrom(rlang,is_scalar_character)
importFrom(stringr,str_detect)
importFrom(stringr,str_interp)
importFrom(stringr,str_match)
importFrom(stringr,str_remove)
importFrom(stringr,str_sort)
importFrom(stringr,str_split)
importFrom(stringr,str_trim)
importFrom(tidyr,expand_grid)
useDynLib(bedtorch, .registration = TRUE)