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update citations for html #232

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Nov 19, 2024
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update citations for html #232

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c3af323
update citations for html
acse-ej321 Nov 18, 2024
169566b
consolidate refs in docs repo
acse-ej321 Nov 18, 2024
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4 changes: 2 additions & 2 deletions demos/demo_references.bib
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Actually, don't we want to remove this bibtex file and just use the one in the docs repo?

Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
@Article{LeVeque:1996,
@article{LeVeque:1996,
author={LeVeque, Randall J.},
title={{High-Resolution Conservative Algorithms for Advection in Incompressible Flow}},
journal={SIAM Journal on Numerical Analysis},
Expand All @@ -9,7 +9,7 @@ @Article{LeVeque:1996
doi={10.1137/0733033}
}

@Book{Hundsdorfer:2003,
@book{Hundsdorfer:2003,
title={Numerical solution of time-dependent advection-diffusion-reaction equations},
author={Hundsdorfer, Willem H and Verwer, Jan G and Hundsdorfer, WH},
volume={33},
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2 changes: 1 addition & 1 deletion demos/gray_scott.py
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Expand Up @@ -160,5 +160,5 @@ def qoi():
#
# .. rubric:: References
#
# .. bibliography:: demo_references.bib
# .. bibliography::
# :filter: docname in docnames
12 changes: 9 additions & 3 deletions demos/point_discharge2d.py
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
#
# Consider the same steady-state advection-diffusion test case as in the
# motivation for the Goalie manual: the "point discharge with diffusion"
# test case from :cite:`RCJ:14`. In this test case, we solve
# test case from :cite:`Riadh:2014`. In this test case, we solve
#
# .. math::
# \left\{\begin{array}{rl}
Expand Down Expand Up @@ -39,11 +39,11 @@ def get_function_spaces(mesh):


# Point sources are difficult to represent in numerical models. Here we
# follow :cite:`WBHP:22` in using a Gaussian approximation. Let
# follow :cite:`Wallwork:2022` in using a Gaussian approximation. Let
# :math:`(x_0,y_0)=(2,5)` denote the point source location and
# :math:`r=0.05606388` be a radius parameter, which has been calibrated
# so that the finite element approximation is as close as possible to the
# analytical solution, in some sense (see :cite:`WBHP:22` for details). ::
# analytical solution, in some sense (see :cite:`Wallwork:2022` for details). ::


def source(mesh):
Expand Down Expand Up @@ -210,3 +210,9 @@ def qoi():
# metric-based mesh adaptation to the point discharge test case considered here.
#
# This tutorial can be dowloaded as a `Python script <point_discharge2d.py>`__.
#
#
# .. rubric:: References
#
# .. bibliography::
# :filter: docname in docnames
2 changes: 1 addition & 1 deletion demos/solid_body_rotation.py
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Expand Up @@ -234,5 +234,5 @@ def qoi():
#
# .. rubric:: References
#
# .. bibliography:: demo_references.bib
# .. bibliography::
# :filter: docname in docnames
2 changes: 1 addition & 1 deletion goalie/math.py
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Expand Up @@ -9,7 +9,7 @@ def bessi0(x):
"""
Modified Bessel function of the first kind.

Code taken from :cite:`VVP+:92`.
Code taken from :cite:`Vetterling:1992`.
"""
if isinstance(x, np.ndarray):
if np.isclose(x, 0).any():
Expand Down
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