Run autoreconf on macos

>> should be > >

aclocal.m4

@@ -1354,8 +1354,8 @@ AC_DEFUN([WX_CONFIG_CHECK],
       AC_MSG_CHECKING([for wxWidgets version >= $min_wx_version ($5)])
     fi
 
-    dnl don't add the libraries (4th argument) to this variable as this would
-    dnl result in an error when it's used with --version below
+    dnl don't add the libraries ($4) to this variable as this would result in
+    dnl an error when it's used with --version below
     WX_CONFIG_WITH_ARGS="$WX_CONFIG_PATH $wx_config_args $5"
 
     WX_VERSION=`$WX_CONFIG_WITH_ARGS --version 2>/dev/null`
@@ -1663,7 +1663,7 @@ AC_DEFUN([WX_ARG_ENABLE_YESNOAUTO],
                 $2=0
             elif test "$enableval" = "auto" ; then
                 AC_MSG_RESULT([will be automatically detected])
-                $2=""
+                $2="auto"
             else
                 AC_MSG_ERROR([
     Unrecognized option value (allowed values: yes, no, auto)
@@ -1689,7 +1689,7 @@ AC_DEFUN([WX_ARG_WITH_YESNOAUTO],
                 $2=0
             elif test "$withval" = "auto" ; then
                 AC_MSG_RESULT([will be automatically detected])
-                $2=""
+                $2="auto"
             else
                 AC_MSG_ERROR([
     Unrecognized option value (allowed values: yes, auto)
@@ -1741,17 +1741,17 @@ AC_DEFUN([WX_STANDARD_OPTIONS],
                 AC_MSG_CHECKING([for the --with-toolkit option])
                 if test "$withval" = "auto" ; then
                     AC_MSG_RESULT([will be automatically detected])
-                    TOOLKIT=""
+                    TOOLKIT="auto"
                 else
                     TOOLKIT="$withval"
 
                     dnl PORT must be one of the allowed values
-                    if test "$TOOLKIT" != "gtk1" -a "$TOOLKIT" != "gtk2" -a "$TOOLKIT" != "gtk3" -a \
+                    if test "$TOOLKIT" != "gtk1" -a "$TOOLKIT" != "gtk2" -a \
                             "$TOOLKIT" != "msw" -a "$TOOLKIT" != "motif" -a \
                             "$TOOLKIT" != "osx_carbon" -a "$TOOLKIT" != "osx_cocoa" -a \
-                            "$TOOLKIT" != "dfb" -a "$TOOLKIT" != "x11" -a "$TOOLKIT" != "base"; then
+                            "$TOOLKIT" != "dfb" -a "$TOOLKIT" != "x11"; then
                         AC_MSG_ERROR([
-    Unrecognized option value (allowed values: auto, gtk1, gtk2, gtk3, msw, motif, osx_carbon, osx_cocoa, dfb, x11, base)
+    Unrecognized option value (allowed values: auto, gtk1, gtk2, msw, motif, osx_carbon, osx_cocoa, dfb, x11)
                         ])
                     fi
 
@@ -1815,7 +1815,7 @@ AC_DEFUN([WX_STANDARD_OPTIONS],
                 AC_MSG_CHECKING([for the --with-wxversion option])
                 if test "$withval" = "auto" ; then
                     AC_MSG_RESULT([will be automatically detected])
-                    WX_RELEASE=""
+                    WX_RELEASE="auto"
                 else
 
                     wx_requested_major_version=`echo $withval | \
@@ -1850,7 +1850,7 @@ dnl ---------------------------------------------------------------------------
 dnl WX_CONVERT_STANDARD_OPTIONS_TO_WXCONFIG_FLAGS
 dnl
 dnl Sets the WXCONFIG_FLAGS string using the SHARED,DEBUG,UNICODE variable values
-dnl which were specified.
+dnl which are different from "auto".
 dnl Thus this macro needs to be called only once all options have been set.
 dnl ---------------------------------------------------------------------------
 AC_DEFUN([WX_CONVERT_STANDARD_OPTIONS_TO_WXCONFIG_FLAGS],
@@ -1874,11 +1874,11 @@ AC_DEFUN([WX_CONVERT_STANDARD_OPTIONS_TO_WXCONFIG_FLAGS],
             WXCONFIG_FLAGS="$WXCONFIG_FLAGS""--unicode=no "
         fi
 
-        if test -n "$TOOLKIT" ; then
+        if test "$TOOLKIT" != "auto" ; then
             WXCONFIG_FLAGS="$WXCONFIG_FLAGS""--toolkit=$TOOLKIT "
         fi
 
-        if test -n "$WX_RELEASE" ; then
+        if test "$WX_RELEASE" != "auto" ; then
             WXCONFIG_FLAGS="$WXCONFIG_FLAGS""--version=$WX_RELEASE "
         fi
 
@@ -1892,16 +1892,16 @@ AC_DEFUN([WX_CONVERT_STANDARD_OPTIONS_TO_WXCONFIG_FLAGS],
 
 
 dnl ---------------------------------------------------------------------------
-dnl _WX_SELECTEDCONFIG_CHECKFOR([RESULTVAR], [STRING], [MSG])
+dnl _WX_SELECTEDCONFIG_CHECKFOR([RESULTVAR], [STRING], [MSG]
+dnl                             [, ACTION-IF-FOUND [, ACTION-IF-NOT-FOUND]])
 dnl
-dnl Sets WX_$RESULTVAR to the value of $RESULTVAR if it's defined. Otherwise,
-dnl auto-detect the value by checking for the presence of STRING in
-dnl $WX_SELECTEDCONFIG (which is supposed to be set by caller) and set
-dnl WX_$RESULTVAR to either 0 or 1, also outputting "yes" or "no" after MSG.
+dnl Outputs the given MSG. Then searches the given STRING in the wxWidgets
+dnl additional CPP flags and put the result of the search in WX_$RESULTVAR
+dnl also adding the "yes" or "no" message result to MSG.
 dnl ---------------------------------------------------------------------------
 AC_DEFUN([_WX_SELECTEDCONFIG_CHECKFOR],
         [
-        if test -z "$$1" ; then
+        if test "$$1" = "auto" ; then
 
             dnl The user does not have particular preferences for this option;
             dnl so we will detect the wxWidgets relative build setting and use it
@@ -1916,9 +1916,11 @@ AC_DEFUN([_WX_SELECTEDCONFIG_CHECKFOR],
             if test "$WX_$1" != "0"; then
                 WX_$1=1
                 AC_MSG_RESULT([yes])
+                ifelse([$4], , :, [$4])
             else
                 WX_$1=0
                 AC_MSG_RESULT([no])
+                ifelse([$5], , :, [$5])
             fi
         else
 
@@ -1965,16 +1967,19 @@ AC_DEFUN([WX_DETECT_STANDARD_OPTION_VALUES],
             echo "[[dbg]] WX_SELECTEDCONFIG: $WX_SELECTEDCONFIG"
         fi
 
+
         dnl we could test directly for WX_SHARED with a line like:
         dnl    _WX_SELECTEDCONFIG_CHECKFOR([SHARED], [shared],
         dnl                                [if wxWidgets was built in SHARED mode])
         dnl but wx-config --selected-config DOES NOT outputs the 'shared'
         dnl word when wx was built in shared mode; it rather outputs the
         dnl 'static' word when built in static mode.
-        if test "$WX_SHARED" = "1"; then
+        if test $WX_SHARED = "1"; then
             STATIC=0
-        elif test "$WX_SHARED" = "0"; then
+        elif test $WX_SHARED = "0"; then
             STATIC=1
+        elif test $WX_SHARED = "auto"; then
+            STATIC="auto"
         fi
 
         dnl Now set the WX_UNICODE, WX_DEBUG, WX_STATIC variables
@@ -1997,34 +2002,30 @@ AC_DEFUN([WX_DETECT_STANDARD_OPTION_VALUES],
         AC_SUBST(WX_SHARED)
 
         dnl detect the WX_PORT to use
-        if test -z "$TOOLKIT" ; then
+        if test "$TOOLKIT" = "auto" ; then
 
             dnl The user does not have particular preferences for this option;
             dnl so we will detect the wxWidgets relative build setting and use it
             AC_MSG_CHECKING([which wxWidgets toolkit was selected])
 
             WX_GTKPORT1=$(expr "$WX_SELECTEDCONFIG" : ".*gtk1.*")
             WX_GTKPORT2=$(expr "$WX_SELECTEDCONFIG" : ".*gtk2.*")
-            WX_GTKPORT3=$(expr "$WX_SELECTEDCONFIG" : ".*gtk3.*")
             WX_MSWPORT=$(expr "$WX_SELECTEDCONFIG" : ".*msw.*")
             WX_MOTIFPORT=$(expr "$WX_SELECTEDCONFIG" : ".*motif.*")
             WX_OSXCOCOAPORT=$(expr "$WX_SELECTEDCONFIG" : ".*osx_cocoa.*")
             WX_OSXCARBONPORT=$(expr "$WX_SELECTEDCONFIG" : ".*osx_carbon.*")
             WX_X11PORT=$(expr "$WX_SELECTEDCONFIG" : ".*x11.*")
             WX_DFBPORT=$(expr "$WX_SELECTEDCONFIG" : ".*dfb.*")
-            WX_BASEPORT=$(expr "$WX_SELECTEDCONFIG" : ".*base.*")
 
             WX_PORT="unknown"
             if test "$WX_GTKPORT1" != "0"; then WX_PORT="gtk1"; fi
             if test "$WX_GTKPORT2" != "0"; then WX_PORT="gtk2"; fi
-            if test "$WX_GTKPORT3" != "0"; then WX_PORT="gtk3"; fi
             if test "$WX_MSWPORT" != "0"; then WX_PORT="msw"; fi
             if test "$WX_MOTIFPORT" != "0"; then WX_PORT="motif"; fi
             if test "$WX_OSXCOCOAPORT" != "0"; then WX_PORT="osx_cocoa"; fi
             if test "$WX_OSXCARBONPORT" != "0"; then WX_PORT="osx_carbon"; fi
             if test "$WX_X11PORT" != "0"; then WX_PORT="x11"; fi
             if test "$WX_DFBPORT" != "0"; then WX_PORT="dfb"; fi
-            if test "$WX_BASEPORT" != "0"; then WX_PORT="base"; fi
 
             dnl NOTE: backward-compatible check for wx2.8; in wx2.9 the mac
             dnl       ports are called 'osx_cocoa' and 'osx_carbon' (see above)
@@ -2042,8 +2043,14 @@ AC_DEFUN([WX_DETECT_STANDARD_OPTION_VALUES],
 
             AC_MSG_RESULT([$WX_PORT])
         else
+
             dnl Use the setting given by the user
-            WX_PORT=$TOOLKIT
+            if test -z "$TOOLKIT" ; then
+                WX_PORT=$TOOLKIT
+            else
+                dnl try with PORT
+                WX_PORT=$PORT
+            fi
         fi
 
         AC_SUBST(WX_PORT)
@@ -2074,29 +2081,35 @@ AC_DEFUN([WX_DETECT_STANDARD_OPTION_VALUES],
                          ])
         fi
 
-        dnl now we can finally update the options to their final values if they
-        dnl were not already set
-        if test -z "$UNICODE" ; then
+        dnl now we can finally update the DEBUG,UNICODE,SHARED options
+        dnl to their final values if they were set to 'auto'
+        if test "$DEBUG" = "auto"; then
+            DEBUG=$WX_DEBUG
+        fi
+        if test "$UNICODE" = "auto"; then
             UNICODE=$WX_UNICODE
         fi
-        if test -z "$SHARED" ; then
+        if test "$SHARED" = "auto"; then
             SHARED=$WX_SHARED
         fi
-        if test -z "$TOOLKIT" ; then
+        if test "$TOOLKIT" = "auto"; then
             TOOLKIT=$WX_PORT
         fi
 
-        dnl respect the DEBUG variable adding the optimize/debug flags and also
-        dnl define a BUILD variable in case the user wants to use it
-        dnl
+        dnl in case the user needs a BUILD=debug/release var...
+        if test "$DEBUG" = "1"; then
+            BUILD="debug"
+        elif test "$DEBUG" = "0" -o "$DEBUG" = ""; then
+            BUILD="release"
+        fi
+
+        dnl respect the DEBUG variable adding the optimize/debug flags
         dnl NOTE: the CXXFLAGS are merged together with the CPPFLAGS so we
         dnl       don't need to set them, too
         if test "$DEBUG" = "1"; then
-            BUILD="debug"
             CXXFLAGS="$CXXFLAGS -g -O0"
             CFLAGS="$CFLAGS -g -O0"
-        elif test "$DEBUG" = "0"; then
-            BUILD="release"
+        else
             CXXFLAGS="$CXXFLAGS -O2"
             CFLAGS="$CFLAGS -O2"
         fi

configure

@@ -1,6 +1,6 @@
 #! /bin/sh
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.69 for fermisurfer 2.0.0.
+# Generated by GNU Autoconf 2.69 for fermisurfer 2.1.0.
 #
 # Report bugs to <mkawamura@issp.u-tokyo.ac.jp>.
 #
@@ -580,8 +580,8 @@ MAKEFLAGS=
 # Identity of this package.
 PACKAGE_NAME='fermisurfer'
 PACKAGE_TARNAME='fermisurfer'
-PACKAGE_VERSION='2.0.0'
-PACKAGE_STRING='fermisurfer 2.0.0'
+PACKAGE_VERSION='2.1.0'
+PACKAGE_STRING='fermisurfer 2.1.0'
 PACKAGE_BUGREPORT='mkawamura@issp.u-tokyo.ac.jp'
 PACKAGE_URL=''
 
@@ -1315,7 +1315,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures fermisurfer 2.0.0 to adapt to many kinds of systems.
+\`configure' configures fermisurfer 2.1.0 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1385,7 +1385,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of fermisurfer 2.0.0:";;
+     short | recursive ) echo "Configuration of fermisurfer 2.1.0:";;
    esac
   cat <<\_ACEOF
 
@@ -1502,7 +1502,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
-fermisurfer configure 2.0.0
+fermisurfer configure 2.1.0
 generated by GNU Autoconf 2.69
 
 Copyright (C) 2012 Free Software Foundation, Inc.
@@ -1842,7 +1842,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by fermisurfer $as_me 2.0.0, which was
+It was created by fermisurfer $as_me 2.1.0, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   $ $0 $@
@@ -2705,7 +2705,7 @@ fi
 
 # Define the identity of the package.
  PACKAGE='fermisurfer'
- VERSION='2.0.0'
+ VERSION='2.1.0'
 
 
 cat >>confdefs.h <<_ACEOF
@@ -7563,7 +7563,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 ac_log="
-This file was extended by fermisurfer $as_me 2.0.0, which was
+This file was extended by fermisurfer $as_me 2.1.0, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -7629,7 +7629,7 @@ _ACEOF
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
 ac_cs_version="\\
-fermisurfer config.status 2.0.0
+fermisurfer config.status 2.1.0
 configured by $0, generated by GNU Autoconf 2.69,
   with options \\"\$ac_cs_config\\"
 

configure.ac

@@ -1,5 +1,5 @@
 AC_PREREQ([2.69])
-AC_INIT([fermisurfer], [2.0.0], [mkawamura@issp.u-tokyo.ac.jp])
+AC_INIT([fermisurfer], [2.1.0], [mkawamura@issp.u-tokyo.ac.jp])
 AC_CONFIG_AUX_DIR([config])
 AM_INIT_AUTOMAKE([-Wall -Werror foreign])
 AC_CONFIG_HEADERS([config.h])

doc/en/conf.py

@@ -54,9 +54,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = '2.0'
+version = '2.1'
 # The full version, including alpha/beta/rc tags.
-release = '2.0.0'
+release = '2.1.0'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

doc/ja/conf.py

@@ -54,9 +54,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = '2.0'
+version = '2.1'
 # The full version, including alpha/beta/rc tags.
-release = '2.0.0'
+release = '2.1.0'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

src/calc_nodeline.cpp

@@ -48,7 +48,7 @@ THE SOFTWARE.
 void calc_nodeline()
 {
   int ib, itri, i, j, ithread, nnl0;
-  std::vector<std::vector<std::vector<std::vector<GLfloat>>>> kvnl_v;
+  std::vector<std::vector<std::vector<std::vector<GLfloat> > > > kvnl_v;
 
   kvnl_v.resize(nthreads);
 

src/equator.cpp

@@ -46,7 +46,7 @@ THE SOFTWARE.
 */
 void equator() {
   int ib, itri, i, j, ithread, nequator0;
-  std::vector<std::vector<std::vector<std::vector<GLfloat>>>> kveq_v;
+  std::vector<std::vector<std::vector<std::vector<GLfloat> > > > kveq_v;
 
   kveq_v.resize(nthreads);
 
@@ -59,7 +59,7 @@ void equator() {
     {
       int sw[3];
       GLfloat a[3][3], prod[3];
-      std::vector<std::vector<GLfloat>> kveq_0;
+      std::vector<std::vector<GLfloat> > kveq_0;
 
       kveq_0.resize(2);
       for (i = 0; i < 2; i++) kveq_0.at(i).resize(3);

src/section.cpp

@@ -275,7 +275,7 @@ void calc_2dbz() {
 */
 void calc_section() {
   int i, j, ib, itri, ithread, n2d0;
-  std::vector<std::vector<std::vector<std::vector<GLfloat>>>> kv2d_v, clr2d_v;
+  std::vector<std::vector<std::vector<std::vector<GLfloat> > > > kv2d_v, clr2d_v;
 
   kv2d_v.resize(nthreads);
   clr2d_v.resize(nthreads);
@@ -291,7 +291,7 @@ private(itri,i,j,ithread)
     {
       int sw[3];
       GLfloat norm[3], a[3][3];
-      std::vector<std::vector<GLfloat>> kv2d_0, clr2d_0;
+      std::vector<std::vector<GLfloat> > kv2d_0, clr2d_0;
 
       kv2d_0.resize(2);
       clr2d_0.resize(2);