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76 changes: 48 additions & 28 deletions doc/manual_right_en.html
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Expand Up @@ -18,7 +18,7 @@
<body bgcolor="CCFFCC">

<center><h1>Manual for FermiSurfer</h1></center>
<center><h2>Version 1.6</h2></center>
<center><h2>Version 1.7</h2></center>
<center><h2>Mitsuaki Kawamura</h2></center>

<hr>
Expand Down Expand Up @@ -206,10 +206,9 @@ <h1><a name="introduction">1, Introduction</a></h1>
an input file for XCrysDen (the bxsf format)
by using the utility program <code>bxsf2frmsf</code>.
</p>
<p>使い方は次のとおりです.<code>examples/</code>ディレクトリにある<code>pb.bxsf</code>
ファイルを例として使います.</p>
<p>The usage is as follow (we use <code>examples/pb.bxsf</code> as an example.):</p>

<h3>5.2.1, For Linuxの場合</h2>
<h3>5.2.1, For Linux</h2>

<p>You can launch generated executable as follows:</p>
<pre><code>
Expand Down Expand Up @@ -285,7 +284,7 @@ <h3>5.2.2, For Windows</h3>
FILE* fo;
int ibnd, ik1, ik2, ik3;

fo = fopen(sample.frmsf”, “w”);
fo = fopen("sample.frmsf", "w");
ierr = fprintf(fo, &quot;%d %d %d\n&quot;, nk1, nk2, nk3);
ierr = fprintf(fo, &quot;%d\n&quot;, iswitch);
ierr = fprintf(fo, &quot;%d\n&quot;, nbnd);
Expand Down Expand Up @@ -422,17 +421,38 @@ <h3>5.2.2, For Windows</h3>
Fig. 3: The Fermi energy is set from 0 Ry to 0.1 Ry
with <code>Shift Fermi energy</code> menu</p>

<hr><h2 id="background-color">6.6, Background color</h2>
<hr><h2 id="setview">6.6, Set view</h2>

<p>Changing the view point.</p>
<dl>
<dt>Scale</dt>
<dd><p>Change the size of the figure.</p>
</dd>
<dt>Position</dt>
<dd><p>Change the xy position of the figure.</p>
</dd>
<dt>Rotation</dt>
<dd><p>Change angles at x-, y-, z- axis.
Rotaions are performed as z-y-x axis.</p>
</dd>
</dl>
<p>In each menu, first the current value is printed.
then a prompt to input the new value appears (Fig. 4).</p>

<p><img src="figs/setview.jpg" align="middle" width="800" alt="" />
Fig. 4: Modify the view point by using <code>Set view</code> menu</p>

<hr><h2 id="background-color">6.7, Background color</h2>

<p>The background color is toggled between black and white;
the edge of the Brillouin Zone is also toggled between white and black
(Fig. 4).</p>
(Fig. 5).</p>
<p><img src="figs/background.jpg" align="middle" width="800" alt="" />
Fig. 4: The background color is toggled with <code>Background color</code> menu.</p>
Fig. 5: The background color is toggled with <code>Background color</code> menu.</p>

<hr><h2 id="color-scale-mode">6.7, Color scale mode</h2>
<hr><h2 id="color-scale-mode">6.8, Color scale mode</h2>

<p>It turns color pattern on Fermi surfaces (Fig. 5).</p>
<p>It turns color pattern on Fermi surfaces (Fig. 6).</p>
<dl>
<p>Auto(default) : It makes blue as the minimum on Fermi surfaces
and red as the maximum on them.</p>
Expand All @@ -447,55 +467,55 @@ <h3>5.2.2, For Windows</h3>
$\rightarrow$ cyan $\rightarrow$ blue $\rightarrow$ magenta $\rightarrow$ red.</p>
</dl>
<p><img src="figs/colorscale.jpg" align="middle" width="800" alt="" />
Fig. 5: <code>Color scale mode</code> menu.</p>
Fig. 6: <code>Color scale mode</code> menu.</p>

<hr><h2 id="brillouin-zone">6.8, Brillouin zone</h2>
<hr><h2 id="brillouin-zone">6.9, Brillouin zone</h2>

<p>You choose Brillouin-zone type as follows (Fig. 6):</p>
<p>You choose Brillouin-zone type as follows (Fig. 7):</p>
<dl>
<p>First Brillouin Zone : The region surrounded by Bragg's planes
the nearest to ${\rm \Gamma}$ point.</p>
<p>Primitive Brillouin Zone : A hexahedron whose corner is the reciprocal lattice point.</p>
</dl>
<p><img src="figs/brillouinzone.jpg" align="middle" width="800" alt="" />
Fig. 6: You can change the type of the Brillouin zone
Fig. 7: You can change the type of the Brillouin zone
with <code>Brillouin zone</code> menu.</p>

<hr><h2 id="node-line">6.9, Node line</h2>
<hr><h2 id="node-line">6.10, Node line</h2>

<p>The line on which the matrix element becomes 0 (we call it node line)
becomes enable/disable (Fig. 7).</p>
becomes enable/disable (Fig. 8).</p>
<p><img src="figs/nodeline.jpg" align="middle" width="800" alt="" />
Fig. 7: Toggling the node line with <code>Node line</code> menu.</p>
Fig. 8: Toggling the node line with <code>Node line</code> menu.</p>

<hr><h2 id="color-bar-onoff">6.10, Color bar On/Off</h2>
<hr><h2 id="color-bar-onoff">6.11, Color bar On/Off</h2>

<p>The color bar becomes enable/disable (Fig. 8).</p>
<p>The color bar becomes enable/disable (Fig. 9).</p>
<p><img src="figs/colorbar.jpg" align="middle" width="800" alt="" />
Fig. 8: Toggling the color bar with <code>Color bar On/Off</code> menu.</p>
Fig. 9: Toggling the color bar with <code>Color bar On/Off</code> menu.</p>

<hr><h2 id="stereogram">6.11, Stereogram</h2>
<hr><h2 id="stereogram">6.12, Stereogram</h2>

<p>The stereogram (parallel eyes and cross eyes) becomes enabled/disabled
(Fig. 9).</p>
(Fig. 10).</p>
<dl>
<p>None (Default)</p>
<p>Parallel : Parallel-eyes stereogram</p>
<p>Cross : Cross-eyes stereogram</p>
</dl>
<p><img src="figs/stereogram.jpg" align="middle" width="800" alt="" />
Fig. 9: The stereogram becomes enabled/disabled with <code>Stereogram</code> menu.</p>
Fig. 10: The stereogram becomes enabled/disabled with <code>Stereogram</code> menu.</p>

<hr><h2 id="tetrahedron">6.12, Tetrahedron</h2>
<hr><h2 id="tetrahedron">6.13, Tetrahedron</h2>

<p>You change the scheme to divide into tetrahedra (<code>tetra # 1</code> as default).
It is experimental.</p>

<hr><h2 id="exit">6.13, Exit</h2>
<hr><h2 id="exit">6.14, Exit</h2>

<p>This finishes <code>fermisurfer</code>.</p>

<hr><h2>6.14, Saving images</h2>
<hr><h2>6.15, Saving images</h2>

<p><code>fermisurfer</code> does not have any functions to
save images to a file.
Expand All @@ -504,9 +524,9 @@ <h3>5.2.2, For Windows</h3>
<hr><h1><a name="gallery">7, Gallery</a></h1>

<p>Contributions of each Fermi surfaces to the Hall effect in IrO$_2$
(Fig. 10. Provided by Mr. Wataru Sano in Arita group, RIKEN)</p>
(Fig. 11. Provided by Mr. Wataru Sano in Arita group, RIKEN)</p>
<p><img src="figs/iro2.jpg" align="middle" width="800" alt="" />
Fig. 10: Contributions of each Fermi surfaces to the Hall effect</p>
Fig. 11: Contributions of each Fermi surfaces to the Hall effect</p>

<hr><h1><a name="acknowledgment">8, Acknowledgment</a></h1>

Expand Down
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Expand Up @@ -18,7 +18,7 @@
<body bgcolor="CCFFCC">

<center><h1>FermiSurferマニュアル</h1></center>
<center><h2>バージョン1.6</h2></center>
<center><h2>バージョン1.7</h2></center>
<center><h2>河村光晶</h2></center>

<hr><a name="hajimeni"><h1>1, はじめに</h1></a>
Expand Down Expand Up @@ -436,16 +436,36 @@ <h3>5.2.2, Windowsの場合</h3>
図3: <code>Shift Fermi energy</code>メニューで
Fermi エネルギーを0 Ryから0.1 Ryに変える.</p>

<hr><h2>6.6, Background color</h2>
<hr><h2>6.6, Set view</h2>

<p>視点を変更します.</p>
<dl>
<dt>Scale</dt>
<dd><p>図形のサイズを指定します.</p>
</dd>
<dt>Position</dt>
<dd><p>図形の上下位置を指定します.</p>
</dd>
<dt>Rotation</dt>
<dd><p>x,y,z軸周りの回転角を指定します.回転操作はz軸-y軸-x軸の順で行われます</p>
</dd>
</dl>
<p>それぞれのメニューを選択すると, はじめに現在の値が表示され,
その後変更後の値を入れるプロンプトが現れます(図4).</p>
<p><img src="figs/setview.jpg" align="middle" width="800" alt="" />
図4: <code>Set view</code>メニューで
視点を変更する.</p>

<hr><h2>6.7, Background color</h2>

<p>背景色を黒または白に切り替えます.
Brillouin Zoneの枠線も白/黒と切り替わります (図4).</p>
Brillouin Zoneの枠線も白/黒と切り替わります (図5).</p>
<p><img src="figs/background.jpg" align="middle" width="800" alt="" />
図4: <code>Background color</code>メニューで背景色を白/黒に切り替える.</p>
図5: <code>Background color</code>メニューで背景色を白/黒に切り替える.</p>

<hr><h2>6.7, Color scale mode</h2>
<hr><h2>6.8, Color scale mode</h2>

<p>Fermi面の色表示のさせ方を変更します(図5).</p>
<p>Fermi面の色表示のさせ方を変更します(図6).</p>
<dl>
<dt>Auto(デフォルト)</dt>
<dd><p>カラースケールの範囲をFermi面上での物理量の最小値から最大値までとします.</p>
Expand All @@ -472,12 +492,12 @@ <h3>5.2.2, Windowsの場合</h3>
</dd>
</dl>
<p><img src="figs/colorscale.jpg" align="middle" width="800" alt="" />
図5: <code>Color scale mode</code>メニュー.</p>
図6: <code>Color scale mode</code>メニュー.</p>

<hr><h2>6.8, Brillouin zone</h2>
<hr><h2>6.9, Brillouin zone</h2>

<p>描画範囲をFirst Brillouin Zone/Primitive Brillouin Zoneと
切り替える事が出来ます (図6).</p>
切り替える事が出来ます (図7).</p>
<dl>
<dt>Fisrst Brillouin Zone</dt>
<dd><p><span class="math">${\rm \Gamma}$</span>
Expand All @@ -488,23 +508,23 @@ <h3>5.2.2, Windowsの場合</h3>
</dd>
</dl>
<p><img src="figs/brillouinzone.jpg" align="middle" width="800" alt="" />
図6: <code>Brillouin zone</code>メニューでBrillouin領域のとり方を変更する.</p>
図7: <code>Brillouin zone</code>メニューでBrillouin領域のとり方を変更する.</p>

<hr><h2>6.9, Node line</h2>
<hr><h2>6.10, Node line</h2>

<p>物理量が0となるところに引く線(node line)のOn/Offを切り替えます(図7).</p>
<p>物理量が0となるところに引く線(node line)のOn/Offを切り替えます(図8).</p>
<p><img src="figs/nodeline.jpg" align="middle" width="800" alt="" />
図7: <code>Node line</code>メニューでnode lineの表示/非表示を切り替える.</p>
図8: <code>Node line</code>メニューでnode lineの表示/非表示を切り替える.</p>

<hr><h2>6.10, Color bar On/Off</h2>
<hr><h2>6.11, Color bar On/Off</h2>

<p>カラーバーの表示/非表示を切り替えます(図8).</p>
<p>カラーバーの表示/非表示を切り替えます(図9).</p>
<p><img src="figs/colorbar.jpg" align="middle" width="800" alt="" />
図8: <code>Color bar On/Off</code>メニューでカラーバーの表示/非表示を切り替える.</p>
図9: <code>Color bar On/Off</code>メニューでカラーバーの表示/非表示を切り替える.</p>

<hr><h2>6.11, Stereogram</h2>
<hr><h2>6.12, Stereogram</h2>

<p>裸眼立体視用の図の表示/非表示を切り替えます(図9).</p>
<p>裸眼立体視用の図の表示/非表示を切り替えます(図10).</p>
<dl>
<dt>None (デフォルト)</dt>
<dd><p>立体視を無効にします.</p>
Expand All @@ -517,19 +537,19 @@ <h3>5.2.2, Windowsの場合</h3>
</dd>
</dl>
<p><img src="figs/stereogram.jpg" align="middle" width="800" alt="" />
図9: <code>Stereogram</code>メニューで立体視用画像を表示する.</p>
図10: <code>Stereogram</code>メニューで立体視用画像を表示する.</p>

<hr><h2>6.12, Tetrahedron</h2>
<hr><h2>6.13, Tetrahedron</h2>

<p>四面体の切り方を変えます(デフォルトは<code>tetra # 1</code>).
図が綺麗になる可能性がありますが,
多くの場合は逆に図がギザギザして汚くなるようです.</p>

<hr><h2>6.13, Exit</h2>
<hr><h2>6.14, Exit</h2>

<p>Fermi Surferを終了します.</p>

<hr><h2>6.14, 画像の保存方法</h2>
<hr><h2>6.15, 画像の保存方法</h2>

<p><code>fermisurfer</code>には画像をファイル出力する機能はありません.
お使いのPCにあった方法でスクリーンショットを取得して
Expand All @@ -538,10 +558,10 @@ <h3>5.2.2, Windowsの場合</h3>

<hr><a name="garally"><h1>7, ギャラリー</h1></a>

<p>IrO$_2$のHall係数に対するFermi面上の各軌道からの寄与 (図10).
<p>IrO$_2$のHall係数に対するFermi面上の各軌道からの寄与 (図11).
理化学研究所 有田グループ 佐野航氏提供).</p>
<p><img src="figs/iro2.jpg" align="middle" width="800" alt="" />
図10: IrO$_2$のHall係数に対するFermi面上の各軌道からの寄与.</p>
図11: IrO$_2$のHall係数に対するFermi面上の各軌道からの寄与.</p>

<hr><a name="acknoledge"><h1>8, 謝辞</h1></a>

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