pepingester is a small command line tool that helps you load up a database of PEPs. It uses looper to handle job submission and requires a PEP of PEPs (a POP) that points to a sample table which holds information about each PEP to be uploaded. An example sample table might look like:
| sample_name | namespace | project_name | type | location |
|---|---|---|---|---|
| demo-biocproject | demo | biocproject | path | /path/to/project_config.yaml |
| demo-piface,demo,piface,path,../pephub/examples/demo/piface/project_config.yaml | demo | piface | path | /path/to/project_config.yaml |
| geo-gse12345678 | geo | gse12345678 | geo | gse12345678 |