update sample_yaml_paths to be accurate, add changelog for 1.9.0

pepkit · Jun 24, 2024 · de024b6 · de024b6
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diff --git a/docs/looper/changelog.md b/docs/looper/changelog.md
@@ -1,6 +1,14 @@
 # Changelog
 
 This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html) and [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) format.
+
+## [1.9.0] -- 2024-06-xx
+
+### Added
+- user can now add sample modifiers and cli modifiers to looper config instead of PEP project [#270](https://github.com/pepkit/looper/issues/270)
+- pipeline interfaces no longer must be nested under sample and project keys within looper config file [#465](https://github.com/pepkit/looper/issues/465)
+
+
 ## [1.8.1] -- 2024-06-05
 
 ### Fixed

diff --git a/docs/looper/pre-submission-hooks.md b/docs/looper/pre-submission-hooks.md
@@ -40,7 +40,7 @@ Saves all sample metadata as a YAML file. The output file path can be customized
 pipeline_type: sample
 var_templates:
   main: "{looper.piface_dir}/pipelines/pipeline1.py"
-  sample_yaml_path: "{looper.output_dir}/custom_sample_yamls"
+  sample_yaml_path: "{looper.output_dir}/custom_sample_yamls/{sample.sample_name}.yaml"
 pre_submit:
   python_functions:
     - looper.write_sample_yaml