Set of tools to generate a multi-eGO force field to perform molecular dynamics simulations

This code allows users to simulate ions confined between material surfaces that are nanometers apart, and extract the associated ionic structure.

Developed and simulated a randomly scattered collective of robots with sensors to self-assemble into any given connected shape, using gradient information derived from the desired shape.

This repository contains the software used in the papers "Self-Replicating Machines in Continuous Space with Virtual Physics" and "Self-Replication and Self-Assembly for Manufacturing" (see self-replicating-machines.pdf and self-replication-and-self-assembly.pdf).

Model self assembly of particles using Inverse Gaussian Noise

This code trains and implements a stochastic physics-informed neural ordinary differential equation (SPINODE) framework on a directed colloidal self-assembly test case.

Simulation software for patchy particles in 2d

AI models for prediction and design of novel self-assembling peptides

This repository contains the post-processed data and MATLAB scripts used to reproduce all figures presented in the manuscript and Supplementary Information (SI) of: "Nonequilibrium Self-Assembly Control by the Stochastic Landscape Method". Authors: Michael Faran and Prof. Gili Bisker.

Simulation of 2D self-assembly driven by depletion force

Central repository for the lattice polyomino self-assembly model

Python library and Julia scripts to simulate several Flexible Chain Walker (FCW) models.

Game for self-assembly to improve memory

Binary subsite extension to the polyomino self-assembly model

This code trains and implements a characterization framework based on deep learning for characterizing structural states of colloidal self-assembly systems.

Material for the 'Trieste Next' popular science festival. SISSA group 2023/2024.

Square Lattice Assembly Model