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yuanboFaith authored Jun 15, 2024
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Expand Up @@ -366,13 +366,34 @@ <h1 class="title toc-ignore">Analysis of Raspberry Ketone Metabolites Using UHPL

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<p>This work (see <a href="https://pubmed.ncbi.nlm.nih.gov/32474352/">original article</a>
published in J. Chroma. B) developed and validated a novel LC/MS method for raspberry ketone
(a natural compound with potential use for body weight control) in mice plasma and brain tissues.
The data analysis is performed in R, with the script and output graphics documented below. The R script has reference to the
<a href="https://www.tidyverse.org/">tidyverse documentation</a> and
<a href="https://www.databrewer.co/">DataBrewer.co</a>.</p>
The data analysis is performed in R, with the script and output graphics documented below. </p>

<br>

<p>The R code has been developed with reference to <a href="https://r4ds.hadley.nz/">R for Data Science (2e)</a>, and the
official documentation of <a href="https://www.tidyverse.org/">tidyverse</a>, and <a href="https://www.databrewer.co/"><strong>DataBrewer.co</strong></a>.
See breakdown of modules below:</p>
<ul>
<li><p><strong>Data visualization</strong> with <strong>ggplot2</strong> (<a href="https://www.databrewer.co/R/visualization/introduction">tutorial</a>
of the fundamentals; and <a href="https://www.databrewer.co/R/gallery">data
viz. gallery</a>).</p></li>
<li><p><a href="https://www.databrewer.co/R/data-wrangling"><strong>Data
wrangling</strong> </a> with the following packages: <a href="https://www.databrewer.co/R/data-wrangling/tidyr/introduction"><strong>tidyr</strong></a>,
transform (e.g., pivoting) the dataset into tidy structure; <a href="https://www.databrewer.co/R/data-wrangling/dplyr/0-introduction"><strong>dplyr</strong></a>,
the basic tools to work with data frames; <a href="https://www.databrewer.co/R/data-wrangling/stringr/0-introduction"><strong>stringr</strong></a>,
work with strings; <a href="https://www.databrewer.co/R/data-wrangling/regular-expression/0-introduction"><strong>regular
expression</strong></a>: search and match a string pattern; <a href="https://www.databrewer.co/R/data-wrangling/purrr/introduction"><strong>purrr</strong></a>,
functional programming (e.g., iterating functions across elements of
columns); and <a href="https://www.databrewer.co/R/data-wrangling/tibble/introduction"><strong>tibble</strong></a>,
work with data frames in the modern tibble structure.</p></li>
</ul>

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<pre class="r"><code>library(readxl)
library(tidyverse)
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