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@AI-sandbox

AI-sandbox

Following Ariadne's thread through the genome, using AI and ML

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  1. neural-admixture neural-admixture Public

    Rapid population clustering with autoencoders

    Python 66 9

  2. SALAI-Net SALAI-Net Public

    Python 14 1

  3. gnomix gnomix Public

    A fast, scalable, and accurate local ancestry method.

    Python 87 14

  4. DataFix DataFix Public

    Jupyter Notebook 9 3

  5. HyperFast HyperFast Public

    Python 60 11

  6. snputils snputils Public

    A Python library for processing diverse genomes

    Python 12

Repositories

Showing 10 of 22 repositories
  • snputils Public

    A Python library for processing diverse genomes

    AI-sandbox/snputils’s past year of commit activity
    Python 12 BSD-3-Clause 0 0 0 Updated Nov 10, 2024
  • asPopGenStats Public

    Ancestry-specific tool for calculating population genetics statistics from Gnomix output

    AI-sandbox/asPopGenStats’s past year of commit activity
    Python 4 0 0 0 Updated Jul 8, 2024
  • gnomix Public

    A fast, scalable, and accurate local ancestry method.

    AI-sandbox/gnomix’s past year of commit activity
    Python 87 14 19 2 Updated Jul 3, 2024
  • neural-admixture Public

    Rapid population clustering with autoencoders

    AI-sandbox/neural-admixture’s past year of commit activity
    Python 66 9 5 1 Updated Jun 25, 2024
  • HyperFast Public
    AI-sandbox/HyperFast’s past year of commit activity
    Python 60 11 0 0 Updated Mar 6, 2024
  • DataFix Public
    AI-sandbox/DataFix’s past year of commit activity
    Jupyter Notebook 9 3 0 0 Updated Feb 1, 2024
  • PopGenAdapt Public

    Semi-Supervised Domain Adaptation for Genotype-to-Phenotype Prediction in Underrepresented Populations

    AI-sandbox/PopGenAdapt’s past year of commit activity
    Python 4 0 0 0 Updated Jan 11, 2024
  • MergeGenome Public
    AI-sandbox/MergeGenome’s past year of commit activity
    Python 0 0 0 0 Updated Jan 2, 2024
  • archetypal-analysis Public
    AI-sandbox/archetypal-analysis’s past year of commit activity
    Python 13 1 1 1 Updated Dec 7, 2023
  • aegen Public

    Autoencoders for genomic data compression, classification, imputation, phasing and simulation.

    AI-sandbox/aegen’s past year of commit activity
    Python 2 1 0 0 Updated Oct 2, 2023
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