v0.20.2

NEW FEATURES

• Add 'pca'
• Add 'plot_pca_results'

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v0.20.1

NEW FEATURES

• Add 'check_sample_selector'
• Add 'check_single_sample_selector'
• Add 'create_keep_args'
• Add 'create_random_samples_selector'
• Add 'create_select_samples_args'
• Add 'create_select_single_sample_args'
• Add 'create_selected_sample_ids'
• Add 'create_single_sample_selector'
• Add 'create_test_single_sample_selector'
• Add 'get_n_samples'
• Add 'is_fam_table'
• Add 'is_psam_table'
• Add 'is_single_sample_selector'
• Add 'select_samples'
• Can use the PLINK '--allow-no-sex' flag in 'assoc_qt'
• Can use the PLINK '--ci' flag in 'assoc_qt'

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v0.20

NEW FEATURES

• Add 'select_snps'
• Add 'create_chromosome_selector'
• Add 'create_single_snp_selector'
• Add 'create_random_snp_selector'
• Add 'create_snp_range_selector'
• Add 'create_snp_window_selector'
• Use attributes to distinguish between pgen_table and bed_table

MINOR IMPROVEMENTS

• 'assoc' now follows uniform interface

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• Uses genio v1.1.0

v0.19.2

NEW FEATURES

• None

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• 'assoc_qt_params' has no 'data' nor 'phe_table' anymore,
  as these are part of 'assoc_qt_data'

v0.19.1

NEW FEATURES

• Added 'check_phe_file_ok_for_qt'
• Added 'check_phe_table_ok_for_qt'
• Added 'get_n_snps'
• Added 'get_n_snps_from_bed_table'
• Added 'get_n_snps_from_bim_table'
• Added 'get_n_snps_from_map_table'
• Added 'get_n_snps_from_ped_table'
• Added 'get_n_snps_from_pgen_table'
• Added 'get_n_snps_from_pvar_table'
• Added 'is_bed_table'
• Added 'is_bim_table'
• Added 'is_map_table'
• Added 'is_ped_table'
• Added 'is_pgen_table'
• Added 'is_pvar_table'

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• Added 'check_phe' does not check if a table of phenotypic
  values can be used in a quantitative trait analysis

v0.19

NEW FEATURES

• Use 'rocker/tidyverse' as the base for the Singularity container

MINOR IMPROVEMENTS

• Improve Singularity doc

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v0.18.0.3

NEW FEATURES

• None

MINOR IMPROVEMENTS

• None

BUG FIXES

• A phenotype table's IID is of type character

DEPRECATED AND DEFUNCT

• None

v0.18.0.2

NEW FEATURES

• Added 'check_fam_filename'
• Added 'check_phe_filename'
• Added 'check_sample_ids'
• Added 'check_sample_ids_filename'
• Added 'get_marker_correlation_coefficients'
• Added 'get_minor_alelle_frequencies'
• Added 'get_sample_ids_from_fam_file'
• Added 'get_sample_ids_from_fam_table'
• Added 'get_sample_ids_from_phe_file'
• Added 'get_sample_ids_from_phe_table'
• Added 'get_test_sample_ids'
• Added 'keep'
• Added 'save_sample_ids'

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v0.18.0.1

NEW FEATURES

• Added convert_plink_bin_files_to_plink_text_files
• Added rename_fids to rename all family IDs in any in-memory data
• Added rename_iids to rename all within-family IDs in any in-memory data

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

v0.17.1

NEW FEATURES

• Added 'compare_assoc_qt_speed' to compare speed of PLINK versions and
  types of data, #26
• Check PLINK arguments to give an error for commands that are ignored,
  as PLINK will not always give you an error or warning

MINOR IMPROVEMENTS

• Use stringi version v1.7.5, #21
• Simplify some get_test_ functions
• Improve code coverage

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None