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Update README.md
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more comaprison
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@Fedorov113
Fedorov113 committed Mar 26, 2020
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## Comparison with other systems

| Feature | Assnake | Anvio | QIIME2 | nf-core | snakePipes | StaG |
|------------------------------------------|------------------------------------|-------------------------------------|---------------------|----------------------------|--------------------------------------------------------------------|-------------------------------------|
| Link | https://github.com/ASSNAKE/assnake | http://merenlab.org/software/anvio/ | https://qiime2.org/ | https://github.com/nf-core | https://academic.oup.com/bioinformatics/article/35/22/4757/5499080 | https://github.com/ctmrbio/stag-mwc |
| Data Management | YES | NO | NO | NO | ? | NO |
| Modularity (without editing source code) | FULL | PARTIAL? | FULL | FULL | NO | NO |
| Metagenomic pipeline | YES | ONLY BINNING | ONLY 16s | In development | NO | PARTIAL |
| Feature | Assnake | Anvio | QIIME2 | nf-core | snakePipes | StaG | SqueezeMeta | Sunbeam | MetaWRAP |
|------------------------------------------|------------------------------------|-------------------------------------|---------------------|----------------------------|--------------------------------------------------------------------|-------------------------------------|-----------------------------------------|-----------------------------------------|-----------------------------------|
| Link | https://github.com/ASSNAKE/assnake | http://merenlab.org/software/anvio/ | https://qiime2.org/ | https://github.com/nf-core | https://academic.oup.com/bioinformatics/article/35/22/4757/5499080 | https://github.com/ctmrbio/stag-mwc | https://github.com/jtamames/SqueezeMeta | https://github.com/sunbeam-labs/sunbeam | https://github.com/bxlab/metaWRAP |
| Data Management | YES | PARTIAL | NO | NO | ? | NO | PARTIAL | YES | NO |
| Modularity (without editing source code) | FULL | PARTIAL? | FULL | FULL | NO | NO | NO | FULL | NO |
| Metagenomic pipeline | YES | ONLY BINNING | ONLY 16s | In development | NO | YES | Only assembly based | YES | YES |
| Workflow system | Snakemake | Snakemake | NONE | Nextflow | Snakemake | Snakemake | Snakemake | Snakemake | NONE |

## Development

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