Merge pull request #47 from AgPipeline/develop

Merging cleanup in recipes - no review

.dockerignore

@@ -1,2 +1,2 @@
-test
+test*
 

.github/workflows/testing_checks.yaml

@@ -53,6 +53,9 @@ jobs:
         uses: actions/checkout@v2
       - name: Finding files
         run: find . -type f -name "*.py" | grep -v 'tests/' > action_pylint_files.txt
+      - name: Update apt databases
+        shell: bash
+        run: 'sudo apt-get update'
       - name: Install system requirements
         shell: bash
         run: 'sudo apt-get install -y python3-gdal gdal-bin libgdal-dev gcc g++ python3.8-dev'

scif_app_recipes/canopycover_v0.0.1_ubuntu20.04.scif

@@ -4,7 +4,7 @@
     tar xvf canopycover.tar.gz
     mv transformer-canopycover-1.7 src
     echo "Removing unneeded files"
-    rm -rf --verbose src/test_data src/tests src/.github
+    rm -rf --verbose src/test_data src/tests src/.github canopycover.tar.gz
 
     # Install Makeflow and other dependencies
     python3.8 -m venv --system-site-packages .venv

scif_app_recipes/greenness_v0.0.1_ubuntu20.04.scif

@@ -16,7 +16,7 @@
     rm -r transformer-rgb-indices-1.3
     .venv/bin/python3 -m pip install --upgrade --no-cache-dir -r "${PWD}/src/requirements.txt"
     echo "Removing unneeded files"
-    rm -rf --verbose src/test_data src/tests src/.github
+    rm -rf --verbose src/test_data src/tests src/.github plot_base_rgb.tar.gz greenness_indices.tar.gz
 
     # Add example Docker command to SCIF app help section
     if [ -n $DOCKER_IMAGE ]; then

scif_app_recipes/plotclip_v0.0.1_ubuntu20.04.scif

@@ -4,8 +4,7 @@
     tar xvf plotclip.tar.gz
     mv transformer-plotclip-2.7 src
     echo "Removing unneeded files"
-    rm -rf --verbose src/test_data src/tests src/.github
-    rm plotclip.tar.gz
+    rm -rf --verbose src/test_data src/tests src/.github plotclip.tar.gz
 
     # Install Makeflow and other dependencies
     python3.8 -m venv --system-site-packages .venv

scif_app_recipes/soilmask_ratio_v0.0.1_ubuntu20.04.scif

@@ -4,7 +4,7 @@
     tar xvzf soilmask_ratio.tar.gz
     mv transformer-soilmask-by-ratio-1.1 src
     echo "Removing unneeded files"
-    rm -rf --verbose src/test_data src/tests src/.github src/figures
+    rm -rf --verbose src/test_data src/tests src/.github src/figures soilmask_ratio.tar.gz
 
     # Install Makeflow and other dependencies
     python3.8 -m venv --system-site-packages .venv

scif_app_recipes/soilmask_v0.0.1_ubuntu20.04.scif

@@ -4,7 +4,7 @@
     tar xvzf soilmask.tar.gz
     mv transformer-soilmask-2.3 src
     echo "Removing unneeded files"
-    rm -rf --verbose src/test_data src/tests src/.github src/figures
+    rm -rf --verbose src/test_data src/tests src/.github src/figures soilmask.tar.gz
 
     # Install Makeflow and other dependencies
     python3.8 -m venv --system-site-packages .venv