stray miniscope_ios

docs/api/devices/camera.md

@@ -1,7 +1,7 @@
 # camera
 
 ```{eval-rst}
-.. automodule:: miniscope_io.devices.camera
+.. automodule:: mio.devices.camera
     :members:
     :undoc-members:
 ```

docs/api/devices/index.md

@@ -7,7 +7,7 @@ camera
 ```
 
 ```{eval-rst}
-.. automodule:: miniscope_io.devices.device
+.. automodule:: mio.devices.device
     :members:
     :undoc-members:
 ```

docs/api/devices/wirefree.md

@@ -1,7 +1,7 @@
 # wirefree
 
 ```{eval-rst}
-.. automodule:: miniscope_io.devices.wirefree
+.. automodule:: mio.devices.wirefree
     :members:
     :undoc-members:
 ```

docs/api/models/pipeline.md

@@ -1,7 +1,7 @@
 # pipeline
 
 ```{eval-rst}
-.. automodule:: miniscope_io.models.pipeline
+.. automodule:: mio.models.pipeline
     :members:
     :undoc-members:
 ```

docs/api/sources.md

@@ -5,7 +5,7 @@ Interfaces to external source devices like miniscopes and DAQs
 ## OpalKelly
 
 ```{eval-rst}
-.. autoclass:: miniscope_io.sources.opalkelly.okDev
+.. autoclass:: mio.sources.opalkelly.okDev
     :members:
     :undoc-members:
 ```

docs/reference/object_model.md

@@ -10,8 +10,8 @@ It encapsulates a {class}`.Pipeline` object that parameterizes one of several
 zero-to-several {class}`.Transform` nodes that transform the source ouput,
 and then one or several {class}`.Sink` nodes for saving data, plotting, and so on.
 
-```{autoclasstree} miniscope_io.devices.Device miniscope_io.devices.Camera miniscope_io.devices.Miniscope 
-:namespace: miniscope_io
+```{autoclasstree} mio.devices.Device mio.devices.Camera mio.devices.Miniscope 
+:namespace: mio
 ```  
 
 ## Pipeline
@@ -33,8 +33,8 @@ their {meth}`.Node.process` method as a "pure"-ish[^pureish] function that takes
 data as input and returns data as output without knowledge of the nodes
 that are connected to it.
 
-```{autoclasstree} miniscope_io.models.PipelineModel miniscope_io.models.Node miniscope_io.models.Source miniscope_io.models.Sink miniscope_io.models.ProcessingNode miniscope_io.models.Pipeline
-:namespace: miniscope_io
+```{autoclasstree} mio.models.PipelineModel mio.models.Node mio.models.Source mio.models.Sink mio.models.ProcessingNode mio.models.Pipeline
+:namespace: mio
 ```  
 
 ## Config

mio/devices/__init__.py

@@ -2,9 +2,9 @@
 Devices!
 """
 
-from miniscope_io.devices.camera import Camera, Miniscope, RecordingCameraMixin
-from miniscope_io.devices.device import Device, DeviceConfig
-from miniscope_io.devices.wirefree import WireFreeMiniscope
+from mio.devices.camera import Camera, Miniscope, RecordingCameraMixin
+from mio.devices.device import Device, DeviceConfig
+from mio.devices.wirefree import WireFreeMiniscope
 
 __all__ = [
     "Camera",

mio/devices/camera.py

@@ -5,8 +5,8 @@
 from abc import ABC, abstractmethod
 from typing import Optional, Union
 
-from miniscope_io.devices.device import Device, DeviceConfig
-from miniscope_io.types import BBox, Resolution
+from mio.devices.device import Device, DeviceConfig
+from mio.types import BBox, Resolution
 
 
 class CameraConfig(DeviceConfig):

mio/devices/device.py

@@ -5,10 +5,10 @@
 from abc import abstractmethod
 from typing import TYPE_CHECKING, Any, Union
 
-from miniscope_io.models import MiniscopeConfig, MiniscopeIOModel, Pipeline, PipelineConfig
+from mio.models import MiniscopeConfig, MiniscopeIOModel, Pipeline, PipelineConfig
 
 if TYPE_CHECKING:
-    from miniscope_io.models.pipeline import Sink, Source, Transform
+    from mio.models.pipeline import Sink, Source, Transform
 
 
 class DeviceConfig(MiniscopeConfig):

mio/models/models.py

@@ -5,7 +5,7 @@
 to group child classes in a semantic inheritance hierarchy.
 
 More specific models should either be defined in their own
-module within the `miniscope_io.models` package or in their own
+module within the `mio.models` package or in their own
 package.
 """
 

mio/sources/file.py

@@ -2,7 +2,7 @@
 File-based data sources
 """
 
-from miniscope_io.models.pipeline import Source
+from mio.models.pipeline import Source
 
 
 class FileSource(Source):

tests/test_devices/test_wirefree.py

@@ -5,12 +5,12 @@
 import numpy as np
 import pytest
 
-from miniscope_io.devices import WireFreeMiniscope
-from miniscope_io.exceptions import EndOfRecordingException
-from miniscope_io.formats import WireFreeSDLayout, WireFreeSDLayout_Battery
-from miniscope_io.models.data import Frame
-from miniscope_io.models.sdcard import SDBufferHeader
-from miniscope_io.utils import hash_video, hash_file
+from mio.devices import WireFreeMiniscope
+from mio.exceptions import EndOfRecordingException
+from mio.formats import WireFreeSDLayout, WireFreeSDLayout_Battery
+from mio.models.data import Frame
+from mio.models.sdcard import SDBufferHeader
+from mio.utils import hash_video, hash_file
 
 pytestmark = pytest.mark.wirefree