Transposons

A bioinformatics project related to Alu and L1 transposons stem-loop structures recognition.

Description:

This repository contains toolkit for our study. The article is available at https://www.nature.com/articles/s41598-019-43403-3

Folders:

src/

Source code (Python and Bash scripts) of sequences pre-processing.

ipython/

IPython notebooks with models evaluation and results visualization.

data/

Full datasets are not present in GitHub repo. You can request them by sending us an email.