Use the word 'transform' more consistently on DESeq2 steps #249
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Purpose:
Closes #220
Strategy
I looked through the RNA-seq examples and looked for the sections where we applied DESeq2 transformations. I then searched and replaced those sentences that only mentioned normalization to mention transformation and link to the 00-rnaseq.html transformation section for more info.
I also found one
TODO
for a link to the rna-seq clustering heatmap link that I fulfilled.And then of course, I ran snakemake on the docker container for re-rendering.
Concerns/Questions for reviewers:
Should I drop the word normalize entirely from these sections (I have not because I think people are more familiar with that word, so I kept it but added "transformation). So now everything says
normalize and transform
.