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feat: Fix muscle models #26

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wants to merge 159 commits into from
Closed

feat: Fix muscle models #26

wants to merge 159 commits into from

Commits on Feb 9, 2023

  1. Initial commit: add GM foot model files

    @divyaksh-chander
    divyaksh-chander committed Feb 9, 2023
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  2. make new free posture example file for testing with GM foot

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    divyaksh-chander committed Feb 9, 2023
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  3. Move GM foot class templates to generic body model folder and include… 

    … in human model
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    divyaksh-chander committed Feb 9, 2023
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  4. Add LIGAMENT_DRIVER ifdef check

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    divyaksh-chander committed Feb 9, 2023
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  5. Add ligament draw settings in default draw settings file

    @divyaksh-chander
    divyaksh-chander committed Feb 9, 2023
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  6. Load GM foot model with incorrect ankle joint

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    divyaksh-chander committed Feb 9, 2023
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  7. Rename AnyViaPointLigament to AnyLigamentViaPoint

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    divyaksh-chander committed Feb 9, 2023
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  8. Use ankle joint definition from GM foot model

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    divyaksh-chander committed Feb 9, 2023
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Commits on Feb 13, 2023

  1. Add drivers for free posture model

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    divyaksh-chander committed Feb 13, 2023
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  2. Include and fix MetatarsalHeadContact. Kinematics runs now

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    divyaksh-chander committed Feb 13, 2023
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  3. include simple muscles for leg and foot

    @divyaksh-chander
    divyaksh-chander committed Feb 13, 2023
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  4. Remove model specific draw settings and use default draw settings. fi… 

    …xes muscle drawing
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    divyaksh-chander committed Feb 13, 2023
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  5. Rename muscle classes from Any*Muscle to AnyMuscle*

    @divyaksh-chander
    divyaksh-chander committed Feb 13, 2023
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  6. move define statement for Metatarsal Head Contact to main file

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Commits on Feb 14, 2023

  1. Restructure GM Foot segments. move foot segments under foot folder

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    divyaksh-chander committed Feb 14, 2023
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  2. Restructure GM Foot joint. Rename jnt.FootJnt to jnt.Foot

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    divyaksh-chander committed Feb 14, 2023
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Commits on Feb 15, 2023

  1. Add mocap model example from GM foot repository

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    divyaksh-chander committed Feb 15, 2023
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  2. Update git ignore to keep P-i-G simple gm foot output file LE_BareFoo… 

    …tWalk anyset
    @divyaksh-chander
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  3. Update path statements to gm foot folder

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  4. update marker protocol to include seg.foot.(foot segment) and add Sca… 

    …lingNode and MoCapMarkerFrameAMMR24 nodes in GM foot segments
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Commits on Feb 16, 2023

  1. Restructure GM foot model tree: update pointers to foot segments and … 

    …foot joints to match hierarchy
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    divyaksh-chander committed Feb 16, 2023
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Commits on Feb 20, 2023

  1. WIP: GM foot mocap model. Intermediate commit. Model doesn't run

    @divyaksh-chander
    divyaksh-chander committed Feb 20, 2023
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  2. Initial commit 3 segment foot model

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    divyaksh-chander committed Feb 20, 2023
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Commits on Feb 21, 2023

  1. Rename files

    @divyaksh-chander
    divyaksh-chander committed Feb 21, 2023
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  2. Switch off muscles and include new midfoot file for development

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    divyaksh-chander committed Feb 21, 2023
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  3. Make new midfoot segment with constituent segments as AnyRefNodes.

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    divyaksh-chander committed Feb 21, 2023
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  4. include new toes file for development

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    divyaksh-chander committed Feb 21, 2023
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Commits on Feb 22, 2023

  1. Make new segments for toes with constituent segments as AnyRefNodes.

    @divyaksh-chander
    divyaksh-chander committed Feb 22, 2023
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  2. clean up of toes.any

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    divyaksh-chander committed Feb 22, 2023
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Commits on Feb 23, 2023

  1. WIP: Remove unused DOFs from 3S foot model

    @divyaksh-chander
    divyaksh-chander committed Feb 23, 2023
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  2. Remove individual foot segs and replace with pointers to lumped segs

    @divyaksh-chander
    divyaksh-chander committed Feb 23, 2023
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  3. update ligament pointers to lumped segs and remove unused ligaments (… 

    …acting on the same lumped seg)
    @divyaksh-chander
    divyaksh-chander committed Feb 23, 2023
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  4. Include muscles with updated pointers to lumped segs

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    divyaksh-chander committed Feb 23, 2023
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Commits on Feb 24, 2023

  1. Start 3SFoot mocap model

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    divyaksh-chander committed Feb 24, 2023
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  2. Substitute simple foot with 3S foot, update force plate definition an… 

    …d marker protocol
    @divyaksh-chander
    divyaksh-chander committed Feb 24, 2023
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  3. Add toe drivers for foot 3s mocap model

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    divyaksh-chander committed Feb 24, 2023
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Commits on Feb 27, 2023

  1. WIP: add calibration studies in 3S mocap model

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    divyaksh-chander committed Feb 27, 2023
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  2. Remove muscles acting on the same segment and remove them from activi… 

    …ty constraint
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    divyaksh-chander committed Feb 27, 2023
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  3. Completely comment out muscle activity constraints that linked unused… 

    … muscles (connecting to the same lumped segment)
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    divyaksh-chander committed Feb 27, 2023
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Commits on Feb 28, 2023

  1. Comment out all muscle activity constraints

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    divyaksh-chander committed Feb 28, 2023
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  2. minor update marker protocol for 3S foot model

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    divyaksh-chander committed Feb 28, 2023
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Commits on Mar 1, 2023

  1. Lumped mass and inertia for 3s foot model

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    divyaksh-chander committed Mar 1, 2023
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Commits on Mar 3, 2023

  1. Foot GM restructure model tree muscles

    @divyaksh-chander
    divyaksh-chander committed Mar 3, 2023
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  2. code cleanup: move all foot muscles code block in one location

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    divyaksh-chander committed Mar 3, 2023
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  3. code cleanup: move all 3S foot muscles code block in one location

    @divyaksh-chander
    divyaksh-chander committed Mar 3, 2023
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  4. Foot 3S restructure model tree muscles

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    divyaksh-chander committed Mar 3, 2023
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Commits on Mar 6, 2023

  1. Merge branch 'master-ammr-2.5' into foot-model

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    divyaksh-chander committed Mar 6, 2023
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Commits on Mar 8, 2023

  1. Link toe drivers in foot 3s

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    divyaksh-chander committed Mar 8, 2023
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Commits on Mar 10, 2023

  1. start new example from Foot3S to work from GM foot folder

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  2. Switch off muscles, use model from GM foot folder, add define stateme… 

    …nt for selection of foot model
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    divyaksh-chander committed Mar 10, 2023
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  3. rename main file

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    divyaksh-chander committed Mar 10, 2023
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  4. create file for Rigid Toe Flex Seg

    @divyaksh-chander
    divyaksh-chander committed Mar 10, 2023
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  5. Add options to select foot model in foot root file

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  6. fix rigid foot with toe flex seg file. create pointers for equivalent… 

    … segs
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  7. create new joint file for rigid foot with toe flex

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    divyaksh-chander committed Mar 10, 2023
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  8. Create new seg nodes file

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    divyaksh-chander committed Mar 10, 2023
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  9. Remove seg related info from seg nodes

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  10. Remove nodes info from seg file and include seg nodes file in the model

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Commits on Mar 13, 2023

  1. include bone drawings as separate file

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Commits on Mar 14, 2023

  1. Add dummy r0 and Axes0 variables in SegRigidToeFlex.any

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  2. Create new rigid part toe flex files for joints, interface, and initi… 

    …al positions. And include these files through the root file
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  3. Remove joints, interfaces and initial positions not needed in Rigid s… 

    …eg with toe flex
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  4. include new muscle file for rigid foot with toe flex

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  5. Remove muscles within the rigid part and remove all muscle activity c… 

    …onstraints.
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Commits on Mar 15, 2023

  1. Include new ligament files for rigid seg with toe flex

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  2. Remove ligaments within the rigid part.

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Commits on Mar 16, 2023

  1. Link toes flexion extension in rigid foot with toe flex model

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  2. Clean-up of foot drivers file in Free posture rigid foot toe flex exa… 

    …mple
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    divyaksh-chander committed Mar 16, 2023
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  3. Clean up bone drawings: remove AnyString for surface folder

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Commits on Mar 17, 2023

  1. Use AnyInertiaMatrix to define mass properties of individual and lump… 

    …ed segs
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Commits on Mar 20, 2023

  1. code clean-up: remove mass properties from seg files

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Commits on Mar 21, 2023

  1. Code cleanup: Make foot folder in root file and update all seg-relate… 

    …d files accordingly
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Commits on Mar 30, 2023

  1. Start foot interface morphing

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    divyaksh-chander committed Mar 30, 2023
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  2. Implement interface morphing in GMfoot, remove GeomScale

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    divyaksh-chander committed Mar 30, 2023
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Commits on Apr 12, 2023

  1. Implement interface morphing in RigidFoot with Toe Flex

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Commits on Jun 14, 2023

  1. Merge branch 'master-ammr-2.5' into foot-model

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    divyaksh-chander committed Jun 14, 2023
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  2. Merge branch 'master-ammr-2.5' into foot-model

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Commits on Jun 16, 2023

  1. update picked points and add option for _SCALING_NONE_

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Commits on Jun 20, 2023

  1. fix interface morphing: remove reverse transformation and update talu… 

    …s ankle joint arel
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Commits on Jul 12, 2023

  1. Merge branch 'master' into foot-model

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  2. create BM statement options for foot models

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Commits on Jul 13, 2023

  1. update BM FOOT MODEL statements in GM foot include. Add reference to … 

    …Foot.Talus in Leg.Seg folder
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  2. Add more points for RBF, fix scaling None, create T0 function in Foot… 

    ….Scale
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  3. include GM foot models using BM Foot statement

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Commits on Jul 18, 2023

  1. Move TLEM subtalar and ankle joint definitions outside of the foot se… 

    …gment so it can be used in GM foot
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    divyaksh-chander committed Jul 18, 2023
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  2. Remove GM Foot Mixin class template and implement changes into AMMR d… 

    …irectly
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    divyaksh-chander committed Jul 18, 2023
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  3. WIP: Update scaling implementation: Interface morphing + Geom Scaling

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    divyaksh-chander committed Jul 18, 2023
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Commits on Jul 19, 2023

  1. Remove GM foot ankle and subtalar joint, add anatomical frame and std… 

    …par references.
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    divyaksh-chander committed Jul 19, 2023
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Commits on Sep 11, 2023

  1. BugFix GM foot mixin

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    divyaksh-chander committed Sep 11, 2023
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Commits on Jan 26, 2024

  1. WIP code cleanup

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    divyaksh-chander committed Jan 26, 2024
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  2. Merge remote-tracking branch 'remotes/origin/master' into foot-model

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    divyaksh-chander committed Jan 26, 2024
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  3. Follow-up to merge of master: remove duplicate definitions of ankle a… 

    …nd subtalar joints
    @divyaksh-chander
    divyaksh-chander committed Jan 26, 2024
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  4. Multiply rotation about x with sign for left right foot

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    divyaksh-chander committed Jan 26, 2024
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Commits on Jan 29, 2024

  1. Refactor scaling: Move lines adding scaling function from seg file to… 

    … scaling file. Include geom scale for segs for mocap model.
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    divyaksh-chander committed Jan 29, 2024
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Commits on Jan 30, 2024

  1. Update to 3s foot mocap model. adjust names and links in the model

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    divyaksh-chander committed Jan 30, 2024
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  2. Remove extra drivers from toe drivers

    @divyaksh-chander
    divyaksh-chander committed Jan 30, 2024
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  3. Switch off reactions for linked toes driver

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    divyaksh-chander committed Jan 30, 2024
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Commits on Feb 1, 2024

  1. improve initial guess of fdl control seg orientation

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    divyaksh-chander committed Feb 1, 2024
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  2. Remove normed measure = off from anykinpointsurface

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    divyaksh-chander committed Feb 1, 2024
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  3. use foot scaling function instead of only geom scale to scale NaviCun… 

    …eiEllipsoidDummySeg
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    divyaksh-chander committed Feb 1, 2024
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  4. Copy Plug-in-gait simple to start the detailed foot mocap model

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    divyaksh-chander committed Feb 1, 2024
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  5. Add GM foot mocap model files to the model

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    divyaksh-chander committed Feb 1, 2024
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  6. use gm foot mocap model files in the main and use the new BM statemen… 

    …ts for using DETAILED FOOT GM model
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    divyaksh-chander committed Feb 1, 2024
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  7. Update pointers to the foot in MarkerProtocolFoot.any and ForcePlates… 

    ….any
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    divyaksh-chander committed Feb 1, 2024
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  8. Add extra lines in main file from GM foot mocap model main file

    @divyaksh-chander
    divyaksh-chander committed Feb 1, 2024
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  9. Update path to GM foot directory

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    divyaksh-chander committed Feb 1, 2024
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  10. Remove line including GM foot model from main since BM statement incl… 

    …udes the detailed foot model
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    divyaksh-chander committed Feb 1, 2024
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  11. update pointers to foot segment folder

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    divyaksh-chander committed Feb 1, 2024
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  12. update pointer to foot model joint folder

    @divyaksh-chander
    divyaksh-chander committed Feb 1, 2024
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Commits on Feb 2, 2024

  1. Attempt to fix Marker Protocol of detailed foot by using scale functi… 

    …on or defining GM foot legacy frame. Scale function doesn't capture the optimization direction correctly.
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    divyaksh-chander committed Feb 2, 2024
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  2. code cleanup: remove commented out lines from Ankle and Subtalar join… 

    …t definitions
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    divyaksh-chander committed Feb 2, 2024
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  3. refactor linked toes driver to include the measure inside the driver

    @divyaksh-chander
    divyaksh-chander committed Feb 2, 2024
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Commits on Feb 5, 2024

  1. Add toe flexion drivers through class template in ExtraDrivers.any.

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Commits on Feb 7, 2024

  1. Make xopy of bvh xsens model to start bvh xsens model with toe flex

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  2. update xsens bvh protocol to include ref frames for foot segments

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    divyaksh-chander committed Feb 7, 2024
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  3. update create foot nodes class template to include ref frames inside … 

    …foot segment
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    divyaksh-chander committed Feb 7, 2024
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  4. add new nodes in gm foot model for mocap models.

    @divyaksh-chander
    divyaksh-chander committed Feb 7, 2024
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  5. Change ARel of MtPhal joint on Proximal Phalange 1 to orient the move… 

    …ment better
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    divyaksh-chander committed Feb 7, 2024
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  6. Adapt bvh xsens model for toe flexion

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    divyaksh-chander committed Feb 7, 2024
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Commits on Feb 12, 2024

  1. Add BM statement for foot model ligaments

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    divyaksh-chander committed Feb 12, 2024
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  2. Include joint muscles for toes and switch off foot model ligaments

    @divyaksh-chander
    divyaksh-chander committed Feb 12, 2024
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  3. Switch off drawing of muscle control seg

    @divyaksh-chander
    divyaksh-chander committed Feb 12, 2024
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Commits on Feb 15, 2024

  1. update interface morphing

    @divyaksh-chander
    divyaksh-chander committed Feb 15, 2024
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  2. Adjust GRF prediction height and remove weak subtalar eversion driver.

    @divyaksh-chander
    divyaksh-chander committed Feb 15, 2024
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  3. update path to mocap marker protocol

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    divyaksh-chander committed Feb 15, 2024
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  4. clean up c3d mocap model toe flexion: delete toe drivers file as it i… 

    …s implemented through extra drivers
    @divyaksh-chander
    divyaksh-chander committed Feb 15, 2024
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  5. add create video file for generating video showing detail of toe flex… 

    …ion in Application/MocapExamples/Plug-in-gait_Simple_ToeFlexion/LowerExtremity.main.any
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    divyaksh-chander committed Feb 15, 2024
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  6. Make WIP model of free posture gm foot with some work on shoe model

    @divyaksh-chander
    divyaksh-chander committed Feb 15, 2024
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  7. Rename toe flexion c3d model

    @divyaksh-chander
    divyaksh-chander committed Feb 15, 2024
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Commits on Feb 18, 2024

  1. Code cleanup seg nodes

    @divyaksh-chander
    divyaksh-chander committed Feb 18, 2024
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Commits on Jun 11, 2024

  1. Rename joint muscles folder to JointMusclesFoot. This prevents errors… 

    … when muscles are switched off as JointMuscles folder is created elsewher.
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    divyaksh-chander committed Jun 11, 2024
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Commits on Jun 17, 2024

  1. Refactor talus.ankle joint definition. Lateral and Medial control poi… 

    …nts are now defined in model parameters.
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    divyaksh-chander committed Jun 17, 2024
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  2. Import Lateral and medial control points from TLEM dataset to GM dataset

    @divyaksh-chander
    divyaksh-chander committed Jun 17, 2024
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Commits on Jun 18, 2024

  1. Add malleoli and malleoli midpoint in RBF transformation.

    @divyaksh-chander
    divyaksh-chander committed Jun 18, 2024
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  2. take reduced set of points for affine transformation in interface mor… 

    …phing
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    divyaksh-chander committed Jun 18, 2024
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  3. Cleanup, remove ankle joint axis, bug fix sign of subtalar joint axis… 

    … (for left side)
    @divyaksh-chander
    divyaksh-chander committed Jun 18, 2024
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  4. Refactor talus.anklejoint.arelunscaled since ankle joint axis is remo… 

    …ved from gm foot parameters. arel unscaled is now defined using unscaled lateral and medial control points.
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    divyaksh-chander committed Jun 18, 2024
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  5. Rename med and lat malleoli as Medial and Lateral Malleolus. They are… 

    … the same points, which were picked on the skin model. TLEM malleoli transformed to GM system are removed completely from the model parameters and segment nodes.
    @divyaksh-chander
    divyaksh-chander committed Jun 18, 2024
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Commits on Jun 19, 2024

  1. WIP: update RotationPenetrationCombiDriver_template.any to include bo… 

    …x constraint
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    divyaksh-chander committed Jun 19, 2024
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Commits on Jun 20, 2024

  1. Clean up of RotationPenetrationCombiDriver_template.any.

    @divyaksh-chander
    divyaksh-chander committed Jun 20, 2024
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  2. Update Extra Drivers file in toe flex bvh example to demo updates to … 

    …the rotation penetration combi driver template.
    @divyaksh-chander
    divyaksh-chander committed Jun 20, 2024
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  3. fix typo in corner coordinates

    @divyaksh-chander
    divyaksh-chander committed Jun 20, 2024
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  4. Update weights for drivers and functions in RotationPenetrationCombiD… 

    …river_template.any
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    divyaksh-chander committed Jun 20, 2024
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Commits on Jun 21, 2024

  1. Update RotationPenetrationCombiDriver_template.any to use smoothramp … 

    …function for depth measure.
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    divyaksh-chander committed Jun 21, 2024
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  2. Add documentation for RotationPenetrationCombiDriver_template.any

    @divyaksh-chander
    divyaksh-chander committed Jun 21, 2024
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Commits on Jun 27, 2024

  1. Add strength scaling factors to toe flexion joint actuator strength.

    @divyaksh-chander
    divyaksh-chander committed Jun 27, 2024
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Commits on Jun 28, 2024

  1. Create heel plantar, metatarsal 1,2,5 plantar nodes from existing sta… 

    …ndard parameters.
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    divyaksh-chander committed Jun 28, 2024
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Commits on Jul 1, 2024

  1. Extend selected outputs of leg model to include outputs also when foo… 

    …t model is GM detailed or GM toe flexion
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    divyaksh-chander committed Jul 1, 2024
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Commits on Jul 10, 2024

  1. Merge branch 'master' into foot-model

    @divyaksh-chander
    divyaksh-chander committed Jul 10, 2024
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  2. Add big toe node in model parameter

    @divyaksh-chander
    divyaksh-chander committed Jul 10, 2024
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Commits on Jul 18, 2024

  1. Add switch for using infinite plane in RotationPenetrationCombiDriver… 

    …_template
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    divyaksh-chander committed Jul 18, 2024
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Commits on Jul 25, 2024

  1. Rename driver for toe flex in mocap inversedynamics

    @divyaksh-chander
    divyaksh-chander committed Jul 25, 2024
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Commits on Aug 5, 2024

  1. Merge branch 'ammr4-beta' into foot-model-ammr4

    @divyaksh-chander
    divyaksh-chander committed Aug 5, 2024
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  2. Merge remote-tracking branch 'remotes/origin/ammr4-beta' into foot-mo… 

    …del-ammr4
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Commits on Oct 7, 2024

  1. Merge branch 'ammr4-beta' into foot-model-ammr4

    @divyaksh-chander
    divyaksh-chander committed Oct 7, 2024
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Commits on Oct 8, 2024

  1. Removing old muscle models from FootGM folder

    hs committed Oct 8, 2024
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  2. bug fix

    hs committed Oct 8, 2024
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  3. New muscle models for foot muscles

    hs committed Oct 8, 2024
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  4. finger muscle models fix

    hs committed Oct 8, 2024
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