TheobaldSubdue

Setup

Install requirements:

pip install guppy3

Prepare your data

You need to create some folders, one for every dataset, in a root folder for your experiment. All folders for the datasets should have a common prefix. In case you have only one dataset, also add a subfolder in your experiment folder. In each of der folders, there must be a subfolder called diffgraphs. The graphs are expected to be given in the networkx JSON format.

You can also provide LineGraph input (one graph datbase in diffgraphs/db.lg).

Run

Go into the source folder and run:

python experiment_runner.py {path_to_your_experiment} {algorithm} {folder_prefix} {graph_input_format}

Substitude {path_to_your_experiment} by the root folder to your experiment, {algorithm} by any of gaston, gspan, subdue_python and {folder_prefix}, the prefix of the folders in your experiment described in the previous section. For {graph_input_format} choose NX, if you have a folder with one NetworkX JSON File per graph or LG, if you are using LineGraph input.

Results

TBD

For each dataset, the results will be put in a subfolder results of your dataset.

Credits

• Subdue Python https://github.com/holderlb/Subdue
• Subdue C https://github.com/gromgull/subdue
• Parsemis https://github.com/timtadh/parsemis
• Parsemis Python Wrapper: https://github.com/tomkdickinson/parsemis_wrapper