option paths_limit

BIONF · Dec 13, 2023 · 0b3c799 · 0b3c799
1 parent c13f69f
commit 0b3c799
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/greedyFAS/fdogFAS.py b/greedyFAS/fdogFAS.py
@@ -191,7 +191,7 @@ def manage_jobpool(jobdict, seed_names, seed_spec, weight_dir, tmp_path, cores,
                      "score_weights": (0.7, 0.0, 0.3), "output": 0, "max_overlap_percentage": 0.0, "domain": True,
                      "pairwise": jobdict[spec], "weight_correction": "loge", "outpath": tmp_path + "/" + spec,
                      "input_linearized": features[0], "input_normal": features[1], "MS_uni": 0,
-                     "ref_proteome": [spec + '.json'], "progress": False, "old_json": False},
+                     "ref_proteome": [spec + '.json'], "progress": False, "old_json": False, "paths_limit": 0},
                      seed_proteome, seed_weight, weight_dir, clan_dict, fasta, tmp_path, interprokeys, phmm])
     jobpool = multiprocessing.Pool(processes=cores)
     results = []

diff --git a/greedyFAS/mainFAS/fasWeighting.py b/greedyFAS/mainFAS/fasWeighting.py
@@ -61,6 +61,8 @@ def w_weighting(protein, domain_count, proteome, option):
 
 def w_count_add_domains(protein, domain_count, proteome):
     features = []
+    if domain_count == 'NA':
+        return 0
     for feature in proteome[protein]:
         features.append(feature)
     for feature in features: