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@BMIRDS

Biomedical Informatics Research and Data Science @ Dartmouth

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  1. deepslide deepslide Public

    Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework f…

    Python 495 140

  2. HistoGAN HistoGAN Public

    Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.

    Python 73 20

  3. 3dMRISegmentation 3dMRISegmentation Public

    Code for NeuroImage: Clinical paper "Automatic post-stroke lesion segmentation on MR images using 3D residual convolutional neural network."

    Python 33 10

  4. medical-image-preprocessing medical-image-preprocessing Public

    Functions for pre-processing large images

    Python 10 3

  5. titan-rtx-benchmark titan-rtx-benchmark Public

    5 1

  6. MORE MORE Public

    Code for "Multi-Ontology Refined Embeddings (MORE): A Hybrid Multi-Ontology and Corpus-based Semantic Representation Model for Biomedical Concepts" in the Journal of Biomedical Informatics.

    Python 5 2

Repositories

Showing 10 of 12 repositories
  • GramViT Public
    BMIRDS/GramViT’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Oct 7, 2024
  • deepslide Public

    Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

    BMIRDS/deepslide’s past year of commit activity
    Python 495 GPL-3.0 140 0 0 Updated Jun 7, 2024
  • SlidePreprocessing Public

    Extract tissues from WSI

    BMIRDS/SlidePreprocessing’s past year of commit activity
    Python 0 GPL-3.0 0 1 1 Updated Jan 18, 2024
  • Slide2Graph Public

    Graph Convolutional Networks for Whole-Slide Analysis in PyTorch

    BMIRDS/Slide2Graph’s past year of commit activity
    Python 4 GPL-3.0 1 0 0 Updated Jun 10, 2022
  • cell-heterogeneity-emtscore Public
    BMIRDS/cell-heterogeneity-emtscore’s past year of commit activity
    Python 0 3 0 0 Updated Mar 16, 2022
  • HistoGAN Public

    Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.

    BMIRDS/HistoGAN’s past year of commit activity
    Python 73 GPL-3.0 20 0 0 Updated Feb 3, 2021
  • MORE Public

    Code for "Multi-Ontology Refined Embeddings (MORE): A Hybrid Multi-Ontology and Corpus-based Semantic Representation Model for Biomedical Concepts" in the Journal of Biomedical Informatics.

    BMIRDS/MORE’s past year of commit activity
    Python 5 GPL-3.0 2 0 0 Updated Oct 6, 2020
  • HealthTranscriptAnnotator Public

    Annotates concepts in patient-physician office visit transcripts.

    BMIRDS/HealthTranscriptAnnotator’s past year of commit activity
    Java 0 0 0 0 Updated Jul 17, 2020
  • DifficultyTranslation Public

    Code for "Difficulty Translation in Histopathology Images" full paper at Artificial Intelligence in Medicine (AIME) 2020.

    BMIRDS/DifficultyTranslation’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Jul 7, 2020
  • 3dMRISegmentation Public

    Code for NeuroImage: Clinical paper "Automatic post-stroke lesion segmentation on MR images using 3D residual convolutional neural network."

    BMIRDS/3dMRISegmentation’s past year of commit activity
    Python 33 GPL-3.0 10 2 0 Updated Jun 9, 2020
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