Create 92-optimization.py #104
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| name: Tests | |
| on: | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| run_tests: | |
| # pull requests are a duplicate of a branch push if within the same repo. | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.repository | |
| name: Test IPython startup files | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10"] | |
| pylon-version: ["5.2.0.13457-deb0_amd64"] | |
| fail-fast: false | |
| env: | |
| TZ: America/New_York | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Set env vars | |
| run: | | |
| export REPOSITORY_NAME=${GITHUB_REPOSITORY#*/} # just the repo, as opposed to org/repo | |
| echo "REPOSITORY_NAME=${REPOSITORY_NAME}" >> $GITHUB_ENV | |
| export ATF_OPEN_CONN_ONCE="yes" | |
| echo "ATF_OPEN_CONN_ONCE=${ATF_OPEN_CONN_ONCE}" >> $GITHUB_ENV | |
| export ATF_SOCKET_HOST="localhost" | |
| echo "ATF_SOCKET_HOST=${ATF_SOCKET_HOST}" >> $GITHUB_ENV | |
| export ATF_SOCKET_PORT=5000 | |
| echo "ATF_SOCKET_PORT=${ATF_SOCKET_PORT}" >> $GITHUB_ENV | |
| export ATF_SIREPO_URL="http://localhost:8000" | |
| echo "ATF_SIREPO_URL=${ATF_SIREPO_URL}" >> $GITHUB_ENV | |
| export PYLON_CAMEMU=10 | |
| echo "PYLON_CAMEMU=${PYLON_CAMEMU}" >> $GITHUB_ENV | |
| export PYLON_CAM_PIXEL_FORMAT="Mono16" | |
| echo "PYLON_CAM_PIXEL_FORMAT=${PYLON_CAM_PIXEL_FORMAT}" >> $GITHUB_ENV | |
| export PYLON_ROOT="/opt/pylon5" | |
| echo "PYLON_ROOT=${PYLON_ROOT}" >> $GITHUB_ENV | |
| - name: Checkout the code | |
| uses: actions/checkout@v3 | |
| - name: Install Pylon .deb package | |
| run: | | |
| # For reference: https://www.gnu.org/software/bash/manual/html_node/The-Set-Builtin.html. | |
| set -vxeuo pipefail | |
| wget --progress=dot:mega ${{ secrets.PYLON_DOWNLOAD_URL_BASE }}/pylon_${{ matrix.pylon-version }}.deb -O pylon.deb | |
| sudo dpkg -i pylon.deb | |
| - name: Set up Python ${{ matrix.python-version }} with conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: ${{ env.REPOSITORY_NAME }}-py${{ matrix.python-version }} | |
| auto-update-conda: true | |
| miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| mamba-version: "*" | |
| channels: conda-forge | |
| - name: Install the package and its dependencies | |
| run: | | |
| # set -vxeuo pipefail | |
| # Do not check for unbound variables (the '-u' flag) as it fails on | |
| # conda deactivate command: | |
| # /usr/share/miniconda3/envs/sirepo-bluesky-py3.9/etc/conda/deactivate.d/glib_deactivate.sh: | |
| # line 1: GSETTINGS_SCHEMA_DIR_CONDA_BACKUP: unbound variable | |
| set -vxeo pipefail | |
| conda env list | |
| # mamba install -c conda-forge -y numpy matplotlib ipython ophyd bluesky databroker sirepo-bluesky | |
| pip install numpy matplotlib ipython ophyd bluesky databroker sirepo-bluesky "ophyd-basler>=0.2.1" "atfdb>=0.2.0" | |
| # Those lines are to install dev version of the packages. Update the branches as needed. | |
| # pip install -v git+https://github.com/BNL-ATF/ophyd-basler@main | |
| # pip install -v git+https://github.com/BNL-ATF/atfdb@main | |
| pip list | |
| conda list | |
| - name: Start MongoDB | |
| uses: supercharge/mongodb-github-action@1.6.0 | |
| - name: Start Sirepo Docker container | |
| uses: NSLS-II/start-sirepo-action@v2 | |
| with: | |
| docker-binary: docker | |
| - name: Start fake socket server | |
| run: | | |
| set -vxeuo pipefail | |
| nohup test-socket-server > /tmp/socket.log 2>&1 & | |
| - name: Prepare databroker config | |
| run: | | |
| set -vxeuo pipefail | |
| mkdir -v -p $HOME/.config/databroker/ | |
| cp -v configs/databroker/local.yml $HOME/.config/databroker/ | |
| - name: Test the code | |
| run: | | |
| set -vxeuo pipefail | |
| # This is what IPython does internally to load the startup files: | |
| command=" | |
| import os | |
| import glob | |
| ip = get_ipython() | |
| startup_files = sorted(glob.glob(os.path.join(os.getcwd(), 'startup/*.py'))) | |
| if os.path.isfile('.ci/drop-in.py'): | |
| startup_files.append('.ci/drop-in.py') | |
| if not startup_files: | |
| raise SystemExit(f'Cannot find any startup files in {os.getcwd()}') | |
| for f in startup_files: | |
| if not os.path.isfile(f): | |
| raise FileNotFoundError(f'File {f} cannot be found.') | |
| print(f'Executing {f} in CI') | |
| ip.parent._exec_file(f)" | |
| ipython --profile=test -c "$command" | |
| status=$? | |
| export ATF_PROFILE_TEST_STATUS="${status}" | |
| echo "ATF_PROFILE_TEST_STATUS=${ATF_PROFILE_TEST_STATUS}" >> $GITHUB_ENV | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: basler-custom-images | |
| path: | | |
| # raw input files passed to Pylon | |
| /tmp/wandering_gaussian_beam/*.png | |
| # HDF5 file(s) generated after bluesky scan(s) | |
| ~/mnt/atfsim_sirepo/data/ | |
| # MPL grid plot of the images obtained via 'hdr.data(...)' | |
| /tmp/test_emulated_basler_camera.png | |
| if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn` | |
| - name: Check socket server logs | |
| run: | | |
| set -vxeuo pipefail | |
| cat /tmp/socket.log | |
| - name: Check Sirepo server logs | |
| run: | | |
| set -vxeuo pipefail | |
| docker ps -a | |
| echo "Sirepo docker container id: ${SIREPO_DOCKER_CONTAINER_ID}" | |
| docker logs ${SIREPO_DOCKER_CONTAINER_ID} | |
| if [ ${ATF_PROFILE_TEST_STATUS} -gt 0 ]; then | |
| exit ${ATF_PROFILE_TEST_STATUS} | |
| fi |