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Yihui (Ray) Ren edited this page Apr 15, 2019 · 9 revisions

General Structure of Meetings:

  • Updates
  • Open Issues
  • Software Milestones

The meeting notes are in reverse chronological order.

Mon 15 Apr 2019 01:21:10 PM EDT

Participants: Shantenu, Ai, Gyorgy, Ray

Discussed on :

  1. Binding free energy (BFE) of drug design problem (Gyorgy)
  2. 2D Experiments for EXALearn control problem is running 2D Cahn-Hilliard developed at UT-Austin (Ai)
  3. Towards the general SRS. (software requirements specification.)

Action items:

  1. all:
    • read all three use-case documents and come up with a general SRS.

Mon 25 Mar 2019 01:04:13 PM EDT

Participants: Shantenu, Shinjae, Ai, Gyorgy, Ray

Discussed on:

  1. Items closed:
    • AI stamped
    • PyCola
  2. three use cases
  3. discussed Peter's reply on cosmoGAN.
  4. Control Module, simple code, I/O for control module

Action Items:

  1. Ray:

    • communicate with Peter on loss function / evaluation function
    • get the code running?

  2. Gyorgy:

    • edit the design doc
    • create two more workflow diagram. one for simulator one for the filter.

  3. Ai:

    • come up with any estimate of computation cost.

Mon 18 Mar 2019 01:02:35 PM EDT

Participants: Shantenu, Ai, Gyorgy, Ray

Discussed on:

  1. Items in the Issue tracking
  2. Ai:
    • Use case document for material design
  3. Ray:
    • Use case document for cosmology

Action Items:

  1. Ray:
    1. compose a email to Peter to converge on the use case
    2. try openMP (PyCola) code with RadicalPilot

Mon 11 Mar 2019 01:02:21 PM EDT

Participants: Frank, Shantenu, Shinjae, Ai, Gyorgy, Ray

Discussed on:

  1. Ray updated on
    • the progress of cosmology simulation code.
    • the RP issues on stampeded2.
  2. Grant Ai access to stampede2

Action Items:

  1. Ray:

    1. communicate with Peter about the pycola code
    2. fill out the requirement template for cosomology project.
    3. try openMP (pycola) code with RadicalPilot
      • alternatively, using other hpc cluster or singularity

  2. Gyorgy:

    1. fill out the requirement template for drug design

  3. Ai:

    1. fill out the requirement template for light source control problem.
    2. send request to stampeded2 to Shantenu

Mon 04 Mar 2019 12:59:30 PM EST

Participants: Shantenu, Shinjae, Ai, Ray

Discussed on:

  1. Ray updates on progress on Radical Pilot and Cosmology simulation code.
    • MUSIC up and running
    • Received comments from Peter
    • RP/Saga still have issues with stampede2
  2. Shinjae updates on the progress on control team.
    • waiting for forward simulation code (tao).
    • another git repo for control team

Action Items for Ray:

  1. push forward with PyCola
  2. design of the library
  3. control requirement document.

Mon 25 Feb 2019 01:05:51 PM EST

Participants: Shantenu, Ai, Gyorgy, Ray

Discussed on:

  1. Mini-app should be without library dependency. PyCola.
  2. (Shantenu:) Hierarchy objectives. "Selection Problem"
  3. RP bug tracking.
  4. Design document.
  5. Confluence access
  6. Gyorgy presents on the drug design problem.

Action Items for Ray:

  1. continue working on the cosmology simulation.

Action Items for Shantenu:

  1. contact IT admin to add team members to confluence.

Mon 11 Feb 2019 01:05:48 PM EST

Participants: Shantenu, Shinjae, Ai, Gyorgy, Ray

Discussed on:

  1. Capture the requirements from the four areas
  2. Shinjae updated the last Friday's meeting to Shantenu.
    • changed the problem from phase diagram to x-ray defraction patterns.
    • need to do more investigation on data
    • no formal requirements yet.
    • further meeting with Kevin.
  3. Ray updated the status on the issues.
  4. How to design the library.
  5. Gyorgy updated on the papers (atom and RL).
    • overview on the problem.
    • AEOLUS project and MOCU framework.

Action Items for Ray:

  1. send the requirement template to Shinjae. need link from Shantenu.

Actions Items for Gyorgy:

  1. presentation on the problem in two weeks.
  2. timeline on the AEOLUS project

Mon 04 Feb 2019 01:04:18 PM EST

Participants: Shantenu, Gyorgy, Ray

Discussed on:

  1. structure for meetings. using git repo wiki and issue tracking.

    • Shantenu showed how this works using one of his projects as an example.
    • the meeting should begins with "actions review"
    • actions are tracked as "issues" using appropriate tags.
    • tags to filter issues. One issue should have at least two tags:
      • "who": (person, group or organization) is going to work on it
      • "what": (specific aspect of the project)
      • we need to converge on what the tags are.
    • Discussion items

  2. first deal line. July 2019, cosmology colleagues.

    • put these dates on goals/deadlines.
    • usage case template.
    • create a landing page with links to confluence and milestones.

  3. initial design.

    • requirements
      • quantitative requirements
      • use case template that BNL can share with cosmology team to capture UC requirements.
    • SRS.

  4. talk to peter about the requirements. the objective to measure the performance. is letting the model works for a range of parameters a good idea.

    • summit access
    • confluence access
    • run radical pilot on summit
    • (fireworks, flucks)

  5. ODED library:

    • app facing API
    • RTS (runtime system.)

Actions Item for Ray:

  1. create a gitrepo structure.
  2. wiki page. meeting notes.
  3. look into radical-collaboration/hpc-workflows
  4. get access to confluence
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