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@BeatsonLab-MicrobialGenomics

BeatsonLab-MicrobialGenomics

Software to understand the molecular mechanisms of infectious disease and to identify therapeutic and diagnostic targets via NGS data

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  1. micropipe micropipe Public

    A pipeline for high-quality bacterial genome construction using ONT sequencing

    HTML 38 9

  2. SeqFindR SeqFindR Public

    [MIRROR] A tool to easily create informative genomic feature plots

    Python 8 1

  3. BeatsonLab-MicrobialGenomics.github.io BeatsonLab-MicrobialGenomics.github.io Public

    Lab Website

    HTML 4 9

  4. ST131_99 ST131_99 Public

    Data for - Global dissemination of a multidrug resistant Escherichia coli clone

    3 2

  5. core-scripts core-scripts Public

    Core/generic bioinformatics scripts. Contains submodule links to all smaller script packages within the Beatson Microbial Genomics group

    2

  6. DiscoPlot DiscoPlot Public

    Forked from mjsull/DiscoPlot

    Visualising discordant reads

    Python 2 1

Repositories

Showing 10 of 16 repositories
  • micropipe Public

    A pipeline for high-quality bacterial genome construction using ONT sequencing

    BeatsonLab-MicrobialGenomics/micropipe’s past year of commit activity
    HTML 38 GPL-3.0 9 1 0 Updated Sep 22, 2022
  • CREATEQ_CPE Public

    Assemblies for CREATE-Q CPE manuscript

    BeatsonLab-MicrobialGenomics/CREATEQ_CPE’s past year of commit activity
    0 0 0 0 Updated Nov 2, 2019
  • DiscoPlot Public Forked from mjsull/DiscoPlot

    Visualising discordant reads

    BeatsonLab-MicrobialGenomics/DiscoPlot’s past year of commit activity
    Python 2 GPL-3.0 4 0 2 Updated Mar 5, 2018
  • ST131_200_Rscripts Public

    R scripts for ST131_200 study

    BeatsonLab-MicrobialGenomics/ST131_200_Rscripts’s past year of commit activity
    R 2 1 0 0 Updated Apr 1, 2016
  • BeatsonLab-MicrobialGenomics.github.io Public

    Lab Website

    BeatsonLab-MicrobialGenomics/BeatsonLab-MicrobialGenomics.github.io’s past year of commit activity
    HTML 4 9 1 0 Updated Oct 8, 2015
  • Contiguity Public Forked from mjsull/Contiguity

    Tool for visualising assemblies.

    BeatsonLab-MicrobialGenomics/Contiguity’s past year of commit activity
    Python 1 GPL-3.0 2 0 1 Updated Sep 15, 2015
  • ST131_99 Public

    Data for - Global dissemination of a multidrug resistant Escherichia coli clone

    BeatsonLab-MicrobialGenomics/ST131_99’s past year of commit activity
    3 2 0 0 Updated Mar 25, 2015
  • SeqFindR Public

    [MIRROR] A tool to easily create informative genomic feature plots

    BeatsonLab-MicrobialGenomics/SeqFindR’s past year of commit activity
    Python 8 1 2 0 Updated Dec 7, 2014
  • Plasmid-barcodes Public

    Generate barcode like images representing unique plasmid element hits from you NGS data

    BeatsonLab-MicrobialGenomics/Plasmid-barcodes’s past year of commit activity
    0 0 0 0 Updated Jun 25, 2014
  • SeqFindr-D3.js Public

    Generate dynamic SeqFindr plots using D3.js library

    BeatsonLab-MicrobialGenomics/SeqFindr-D3.js’s past year of commit activity
    JavaScript 1 0 0 0 Updated Jun 25, 2014
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