Please use git log in preference to information as it is sporadically updated and may be incomplete.
- 2014-07-10 Mitchell Stanton-Cook <m.stantoncook@gmail.com>:
- Rewrote setup.py
- Added a release script
- Moved to semantic versioning
- SeqFindR --> SeqFindr (as 'R' looks to associate with R)
- Improved the doumentation
- Added bumpversion and do_release to make releases significantly easier
- 2013-08-16 Mitchell Stanton-Cook <m.stantoncook@gmail.com>:
- General refactors & code cleaning/optimisations
- Split into: blast.py, config.py, imaging.py, SeqFindr.py & util.py
- fixed meta information
- Installation should (python setup.py install) should now be more robust)
- fixed argparse. Required options are now required not optional (database & ass_dir)
- output & output_prefix now do something...
- New option -s/--strip (will strip off the 1st and last N bases from the mapping consensuses and database to avoid uncalled bases at the start and end of runs
- Improved output image control (dpi, size, color & seed control)
- 2013-07-16 Nabil-Fareed Alikhan <n.alikhan@uq.edu.au>:
- Added Ability to use amino acid sequences as Virluence factors
- Added helper method to automatically detect type of sequence file (nucl or pro)
- Added commandline override option for above auto-detection ( -R )
- Replaced a number of system calls and pathnames with cross platform friendly alternatives
- Added support for fasta file extensions .fna, .fas, .fa; rather than just .fas (For query sequences)
- Added tBLASTx functionality and option to trigger it ( -X )