Linsley et al. 2024. Germline-like TCR alpha chains shared between autoreactive T cells in blood and pancreas.
This repository contains data and code needed to generate the manuscript figures. The data arre organized into four folders:
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Figure_code. Contains R scripts to generate the graphs in the Main and Supplemental Figures. The code references data contained in a workiing directory on a Mac Desktop (setwd("/Users/peterlinsley/Desktop/PIT_TCR_paper_code/data"). There are two sub folders in this directory, one containing code for the final figures and the other containing additional code that was used for generation of the figures.
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data. Contains all data files used in generation fo teh figures.
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Figure_PDFs. Contains PDF files for the individuaal panels in each figure.
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models. Contains .pdb files used for figures utilizing TCR models generated using TCRmodel2.