saMBA-pipeline

Description...

Preparation

Every software required for this analysis is detailed in env/samba.yaml. Each software (with required versions) can be easily installed using a software manager like micromamba.

# download yaml
wget https://github.com/Benjamin-Valderrama/saMBA-pipeline/blob/main/env/samba.yaml

# build an exact local copy of the environment required for this analysis
micromamba env create --name samba --file samba.yaml

# the environment has to be activated before it can be used
micromamba activate samba

Usage

To be filled...