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@Bhattacharya-Lab

Bhattacharya Lab

Debswapna Bhattacharya's Research Group in the CS Department at Virginia Tech

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  1. PolyFold PolyFold Public

    An interactive visual simulator for distance-based protein folding

    Java 24 6

  2. EquiPNAS EquiPNAS Public

    pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction

    Python 20 1

  3. EquiPPIS EquiPPIS Public

    E(3) equivariant graph neural network for PPI site prediction

    Python 9 2

  4. QDeep QDeep Public

    Distance-based protein model quality estimation using deep ResNets

    Python 8 5

  5. CASP15 CASP15 Public

    CASP15 performance benchmarking of the state-of-the-art protein structure prediction methods

    7

  6. ProRNA3D-single ProRNA3D-single Public

    Single-sequence protein-RNA complex structure prediction with biological language models

    Python 7

Repositories

Showing 10 of 13 repositories
  • lociPARSE Public

    locality-aware invariant Point Attention-based RNA ScorEr

    Bhattacharya-Lab/lociPARSE’s past year of commit activity
    Python 6 GPL-3.0 0 1 0 Updated Nov 11, 2024
  • ProRNA3D-single Public

    Single-sequence protein-RNA complex structure prediction with biological language models

    Bhattacharya-Lab/ProRNA3D-single’s past year of commit activity
    Python 7 GPL-3.0 0 0 0 Updated Aug 23, 2024
  • RNAmark Public

    The landscape of RNA 3D structure modeling with transformer networks

    Bhattacharya-Lab/RNAmark’s past year of commit activity
    Shell 1 GPL-3.0 0 0 0 Updated Jul 21, 2024
  • EquiPNAS Public

    pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction

    Bhattacharya-Lab/EquiPNAS’s past year of commit activity
    Python 20 GPL-3.0 1 2 0 Updated Apr 24, 2024
  • CASP15 Public

    CASP15 performance benchmarking of the state-of-the-art protein structure prediction methods

    Bhattacharya-Lab/CASP15’s past year of commit activity
    7 GPL-3.0 0 1 0 Updated Dec 13, 2023
  • EquiPPIS Public

    E(3) equivariant graph neural network for PPI site prediction

    Bhattacharya-Lab/EquiPPIS’s past year of commit activity
    Python 9 GPL-3.0 2 1 0 Updated Sep 18, 2023
  • PIQLE Public

    Protein-protein interface quality estimation by deep graph learning

    Bhattacharya-Lab/PIQLE’s past year of commit activity
    Python 4 GPL-3.0 2 2 0 Updated Aug 8, 2023
  • rrQNet Public

    Protein contact map quality estimation by evolutionary reconciliation

    Bhattacharya-Lab/rrQNet’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jul 21, 2022
  • SPECS Public

    Superposition-based Protein Embedded CA SC score

    Bhattacharya-Lab/SPECS’s past year of commit activity
    C++ 3 GPL-3.0 4 1 0 Updated Oct 11, 2021
  • DisCovER Public

    Distance- and orientation-based Covariational threadER

    Bhattacharya-Lab/DisCovER’s past year of commit activity
    C++ 0 GPL-3.0 0 0 0 Updated Oct 11, 2021

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