Online documentation.

nmv/interface/ui/analysis/analysis_panel_ops.py

@@ -366,7 +366,9 @@ def sketch_morphology_skeleton_guide(morphology,
     nmv.scene.clear_scene()
 
     # Create a skeletonizer object to build the morphology skeleton
-    builder = nmv.builders.DisconnectedSectionsBuilder(morphology, options)
+    options_clone = copy.deepcopy(options)
+    options_clone.morphology.branching = nmv.enums.Skeleton.Branching.RADII
+    builder = nmv.builders.ConnectedSectionsBuilder(morphology, options_clone)
 
     # Draw the morphology skeleton and return a list of all the reconstructed objects
     nmv.interface.ui_reconstructed_skeleton = builder.draw_morphology_skeleton()

nmv/interface/ui/edit/edit_panel.py

@@ -192,6 +192,14 @@ def execute(self,
         # Clear the scene
         nmv.scene.ops.clear_scene()
 
+        # Switch to the wire-frame mode
+        nmv.scene.switch_interface_to_edit_mode()
+
+        # Sketch the guide to make sure users can see something
+        nmv.interface.ui.sketch_morphology_skeleton_guide(
+            morphology=nmv.interface.ui_morphology,
+            options=copy.deepcopy(nmv.interface.ui_options))
+
         # Sketch the morphological skeleton for repair
         morphology_editor = nmv.edit.MorphologyEditor(
             morphology=nmv.interface.ui_morphology, options=nmv.interface.ui_options)
@@ -235,6 +243,9 @@ def execute(self,
             'FINISHED'
         """
 
+        # Switch back to the solid mode
+        nmv.scene.switch_interface_to_visualization_mode()
+
         # Create an object of the repairer
         global morphology_editor
 
@@ -312,11 +323,11 @@ def execute(self,
 # @MorphologyEditingDocumentation
 ####################################################################################################
 class MorphologyEditingDocumentation(bpy.types.Operator):
-    """Open the documentation page of the Morphology Editing panel."""
+    """Open the online documentation page of the Morphology Editing panel."""
 
     # Operator parameters
     bl_idname = "nmv.documentation_editing"
-    bl_label = "Documentation"
+    bl_label = "Online User Guide"
 
     ################################################################################################
     # @execute

nmv/interface/ui/io/io_panel.py

@@ -266,11 +266,11 @@ def execute(self,
 # @InputOutputDocumentation
 ####################################################################################################
 class InputOutputDocumentation(bpy.types.Operator):
-    """Open the documentation page of the IO module."""
+    """Open the online documentation page of the IO panel."""
 
     # Operator parameters
     bl_idname = "nmv.documentation_io"
-    bl_label = "Documentation"
+    bl_label = "Online User Guide"
 
     ################################################################################################
     # @execute

nmv/interface/ui/mesh/mesh_panel.py

@@ -582,11 +582,11 @@ def execute(self, context):
 # @InputOutputDocumentation
 ####################################################################################################
 class MeshReconstructionDocumentation(bpy.types.Operator):
-    """Open the documentation page of the Mesh Reconstruction panel."""
+    """Open the online documentation page of the Mesh Reconstruction panel."""
 
     # Operator parameters
     bl_idname = "nmv.documentation_mesh"
-    bl_label = "Documentation"
+    bl_label = "Online User Guide"
 
     ################################################################################################
     # @execute

nmv/interface/ui/morphology/morphology_panel.py

@@ -844,11 +844,11 @@ def execute(self,
 # @MorphologyReconstructionDocumentation
 ####################################################################################################
 class MorphologyReconstructionDocumentation(bpy.types.Operator):
-    """Open the documentation page of the Morphology Reconstruction panel."""
+    """Open the online documentation page of the Morphology Reconstruction panel."""
 
     # Operator parameters
     bl_idname = "nmv.documentation_morphology"
-    bl_label = "Documentation"
+    bl_label = "Online User Guide"
 
     ################################################################################################
     # @execute

nmv/interface/ui/soma/soma_panel.py

@@ -1104,11 +1104,11 @@ def execute(self,
 # @SomaReconstructionDocumentation
 ####################################################################################################
 class SomaReconstructionDocumentation(bpy.types.Operator):
-    """Open the documentation page of the Soma Reconstruction panel."""
+    """Open the online documentation page of the Soma Reconstruction panel."""
 
     # Operator parameters
     bl_idname = "nmv.documentation_soma"
-    bl_label = "Documentation"
+    bl_label = "Online User Guide"
 
     ################################################################################################
     # @execute

nmv/scene/ops/scene_ops.py

@@ -1162,3 +1162,34 @@ def view_all_scene():
 
     # View all the objects in the scene
     bpy.ops.view3d.view_all()
+
+
+####################################################################################################
+# @switch_scene_shading
+####################################################################################################
+def switch_scene_shading(shading_type='SOLID'):
+    """Switches the scene panel to the given shading type
+
+    :param shading_type:
+        One of the following:  'WIREFRAME' '(SOLID)' 'MATERIAL' 'RENDERED'
+    """
+
+    areas = bpy.context.workspace.screens[0].areas
+    for area in areas:
+        for space in area.spaces:
+            if space.type == 'VIEW_3D':
+                space.shading.type = shading_type
+
+
+def switch_interface_to_edit_mode():
+    nmv.scene.switch_scene_shading('WIREFRAME')
+    bpy.context.preferences.themes['Default'].view_3d.vertex_size = 8
+
+
+def switch_interface_to_visualization_mode():
+    nmv.scene.switch_scene_shading('SOLID')
+
+    bpy.context.preferences.themes['Default'].view_3d.vertex.r = 0
+    bpy.context.preferences.themes['Default'].view_3d.vertex.g = 0
+    bpy.context.preferences.themes['Default'].view_3d.vertex.b = 0
+    bpy.context.preferences.themes['Default'].view_3d.vertex_size = 3