The development of this software was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government’s ETH Board of the Swiss Federal Institutes of Technology.
Copyright (c) 2024 Blue Brain Project/EPFL
This is the detailed NGV metabolism model. Both unitary metabolism model and the Neurodamus-coupled model (running with the circuit) are here. For any questions please contact polina.shichkova@epfl.ch
module neurodamus-neocortex module julia/1.5.2 or 1.6.0 module py-neurodamus module py-bluepy module py-efel
bbpcode.epfl.ch/cells/BluePyEModel with git review -d 52878 with dependencies therein
diffeqpy numpy textwrap collections contextlib pickle Neurodamus mpi4py
Julia pkgs:
[0f109fa4] BifurcationKit v0.1.3 [a134a8b2] BlackBoxOptim v0.5.0 [8d3b24bd] CMAEvolutionStrategy v0.2.1 [336ed68f] CSV v0.8.4 [479239e8] Catalyst v6.12.1 [a93c6f00] DataFrames v1.0.1 [2b5f629d] DiffEqBase v6.60.0 [aae7a2af] DiffEqFlux v1.36.1 [c894b116] DiffEqJump v6.14.1 [1130ab10] DiffEqParamEstim v1.20.1 [0c46a032] DifferentialEquations v6.16.0 [86b6b26d] Evolutionary v0.9.0 [587475ba] Flux v0.12.1 [a75be94c] GalacticOptim v1.1.0 [7073ff75] IJulia v1.23.2 [23fbe1c1] Latexify v0.15.5 [961ee093] ModelingToolkit v5.16.0 [3933049c] MultistartOptimization v0.1.2 [76087f3c] NLopt v0.6.2 [429524aa] Optim v1.3.0 [1dea7af3] OrdinaryDiffEq v5.52.7 [65888b18] ParameterizedFunctions v5.10.0 [91a5bcdd] Plots v1.13.2 [438e738f] PyCall v1.92.3 [731186ca] RecursiveArrayTools v2.11.3 [efcf1570] Setfield v0.7.0 [276daf66] SpecialFunctions v0.10.3 [9672c7b4] SteadyStateDiffEq v1.6.2 [789caeaf] StochasticDiffEq v6.33.1
This is WIP. So that requirements will be updated in the future.
only installation of dependencies is required