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@BoevaLab

Boeva Lab, ETH Zurich

Computational (Epi-)genetics of Cancer

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  1. FREEC FREEC Public

    Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

    C++ 144 47

  2. ONCOCNV ONCOCNV Public

    ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data

    R 23 12

  3. LILY LILY Public

    Detection of super-enhancers in cancer data

    R 19 9

  4. SV-Bay SV-Bay Public

    Detection of structural variants in cancer mate-pair and paired-end data

    Python 12 2

  5. CanSig CanSig Public

    Discovering de novo shared transcriptional programs in single cancer cells

    Python 12 3

  6. HMCan HMCan Public

    C++ 7 4

Repositories

Showing 10 of 32 repositories
  • BoevaLab/sparsesurv’s past year of commit activity
    Python 1 BSD-3-Clause 0 5 0 Updated Jun 26, 2024
  • infercnvpy Public Forked from icbi-lab/infercnvpy

    Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

    BoevaLab/infercnvpy’s past year of commit activity
    Python 1 BSD-3-Clause 27 0 1 Updated May 21, 2024
  • scalop Public Forked from jlaffy/scalop

    Single Cell Analysis Operations

    BoevaLab/scalop’s past year of commit activity
    R 0 MIT 18 0 0 Updated May 16, 2024
  • BoevaLab/ANS_supplementary_information’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 29, 2024
  • BoevaLab/survboard’s past year of commit activity
    R 4 MIT 0 1 0 Updated Apr 25, 2024
  • BoevaLab/nsclc_patterns’s past year of commit activity
    0 0 0 0 Updated Apr 15, 2024
  • FREEC Public

    Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

    BoevaLab/FREEC’s past year of commit activity
    C++ 144 47 81 10 Updated Feb 23, 2024
  • CRCPolyp Public

    Supporting code for Identification of early DNA methylation field cancerization in normal colonic mucosa in patients with adenomas and neoplastic lesions

    BoevaLab/CRCPolyp’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 20, 2024
  • CHIPIN Public

    ChIP-seq Intersample Normalization

    BoevaLab/CHIPIN’s past year of commit activity
    R 7 GPL-3.0 6 2 1 Updated Feb 1, 2024
  • Multi-omics-noise-resistance Public

    More data, more problems? On noise resistance in multi-omics cancer survival models

    BoevaLab/Multi-omics-noise-resistance’s past year of commit activity
    Python 4 MIT 1 0 0 Updated Jul 29, 2023

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