do changelog

C-Accel-CRIPT · May 20, 2024 · 4693b7c · 4693b7c
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diff --git a/.trunk/configs/.cspell.json b/.trunk/configs/.cspell.json
@@ -123,6 +123,9 @@
  "Doctests",
  "linenums",
  "XLYOFNOQVPJJNP",
- "CRIPTUUID"
+ "CRIPTUUID",
+ "rootdir",
+ "startswith",
+ "pluggy"
  ]
 }
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,8 +1,94 @@
 # CRIPT Python SDK Changelog
 
+## Version 2.4.0
+
+### New Features
+
+- `cript.API` searches work as intended.
+- SDK initiated searches can be controlled and interrupted for large queries.
+
+### Known Issues and Bugs
+
+- Saving projects is not supported. Temporarily, you can use `get_expanded_json` to store a JSON representation of projects, which can be uploaded into CRIPT at a later time.
+- Permission settings in CRIPT do not influence the behavior of the SDK objects.
+- Tests that require valid tokens (like saving or searching) are not included in CI/CD tests.
+- BigSMILES searches can contain duplicates.
+
+### Bug Fixes
+
+- Search is now matched with the API requirements.
+
+### Breaking Changes
+
+- The Paginator interface changed to reflect the backend requirements.
+
+### Health Report
+
+````shell
+=============================================================================================== test session starts ===============================================================================================
+platform linux -- Python 3.11.2, pytest-7.4.3, pluggy-1.3.0
+rootdir: /home/ludwig/git/Python-SDK
+plugins: cov-4.1.0
+collected 124 items
+
+tests/test_node_util.py ........... [ 8%]
+tests/api/test_api.py ..... [ 12%]
+tests/api/test_db_schema.py ..... [ 16%]
+tests/api/test_search.py .....F [ 21%]
+tests/nodes/test_utils.py .. [ 23%]
+tests/nodes/primary_nodes/test_collection.py .....F [ 28%]
+tests/nodes/primary_nodes/test_computation.py .....F [ 33%]
+tests/nodes/primary_nodes/test_computational_process.py ....F [ 37%]
+tests/nodes/primary_nodes/test_data.py ....F [ 41%]
+tests/nodes/primary_nodes/test_experiment.py ....F [ 45%]
+tests/nodes/primary_nodes/test_inventory.py ..F [ 47%]
+tests/nodes/primary_nodes/test_material.py ...F [ 50%]
+tests/nodes/primary_nodes/test_process.py .....F [ 55%]
+tests/nodes/primary_nodes/test_project.py ...F [ 58%]
+tests/nodes/primary_nodes/test_reference.py ......F [ 64%]
+tests/nodes/subobjects/test_algorithm.py ..F [ 66%]
+tests/nodes/subobjects/test_citation.py ..F [ 69%]
+tests/nodes/subobjects/test_computational_forcefield.py ..F [ 71%]
+tests/nodes/subobjects/test_condition.py ..F [ 74%]
+tests/nodes/subobjects/test_equipment.py ..F [ 76%]
+tests/nodes/subobjects/test_ingredient.py ..F [ 79%]
+tests/nodes/subobjects/test_parameter.py ..F [ 81%]
+tests/nodes/subobjects/test_property.py ..F [ 83%]
+tests/nodes/subobjects/test_quantity.py ..F [ 86%]
+tests/nodes/subobjects/test_software.py ...F [ 89%]
+tests/nodes/subobjects/test_software_configuration.py ..F [ 91%]
+tests/nodes/supporting_nodes/test_file.py ..s....F [ 98%]
+tests/nodes/supporting_nodes/test_user.py ..
+
+FAILED tests/nodes/primary_nodes/test_collection.py::test_integration_collection - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/primary_nodes/test_computation.py::test_integration_computation - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/primary_nodes/test_computational_process.py::test_integration_computational_process - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/primary_nodes/test_data.py::test_integration_data - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/primary_nodes/test_experiment.py::test_integration_experiment - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/primary_nodes/test_inventory.py::test_integration_inventory - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/primary_nodes/test_material.py::test_integration_material - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/primary_nodes/test_process.py::test_integration_complex_process - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/primary_nodes/test_project.py::test_integration_project - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/primary_nodes/test_reference.py::test_integration_reference - IndexError: list index out of range
+FAILED tests/nodes/subobjects/test_algorithm.py::test_integration_algorithm - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/subobjects/test_citation.py::test_integration_citation - IndexError: list index out of range
+FAILED tests/nodes/subobjects/test_computational_forcefield.py::test_integration_computational_forcefield - AttributeError: 'NoneType' object has no attribute 'description'
+FAILED tests/nodes/subobjects/test_condition.py::test_integration_process_condition - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/subobjects/test_equipment.py::test_integration_equipment - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/subobjects/test_ingredient.py::test_integration_ingredient - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/subobjects/test_parameter.py::test_integration_parameter - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/subobjects/test_property.py::test_integration_material_property - IndexError: list index out of range
+FAILED tests/nodes/subobjects/test_quantity.py::test_integration_quantity - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/subobjects/test_software.py::test_integration_software - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/subobjects/test_software_configuration.py::test_integration_software_configuration - AttributeError: 'list' object has no attribute 'startswith'
+FAILED tests/nodes/supporting_nodes/test_file.py::test_integration_file - AttributeError: 'list' object has no attribute 'startswith'
+======================================================================== 22 failed, 101 passed, 1 skipped, 1 warning in 1506.18s (0:25:06) ========================================================================
+
+
+
 ## Version 2.3.0
 
-**New Features:**
+### New Features
 
 - `cript.API` objects now have a `DataSchema` attribute called `schema`, representing the JSON schema for node validation.
  - This includes the ability to enable and disable node validation.
@@ -19,22 +105,22 @@
 - Debugging messages show full API requests and responses for debugging.
 - Automated UUID caching for nodes can now be explicitly circumvented when using `cript.load_nodes_from_json`. Mostly useful for development.
 
-**Known Issues and Bugs:**
+### Known Issues and Bugs
 
 - Saving projects is not supported. Temporarily, you can use `get_expanded_json` to store a JSON representation of projects, which can be uploaded into CRIPT at a later time.
 - BigSMILES search patterns are not supported.
 - Searching for more than 1000 pages (10000 entries) is not supported.
 - Permission settings in CRIPT do not influence the behavior of the SDK objects.
 - Tests that require valid tokens (like saving or searching) are not included in CI/CD tests.
 
-**Bugfixes:**
+### Bugfixes
 
 - `cript.load_nodes_from_json` can now load JSON files that store different nodes in lists or dictionaries.
 - Not all nodes were correctly validated at all times, especially if instantiated from JSON. All nodes are automatically validated now.
 - The documentation has been updated to remove certain mistakes.
 - Users can have only one Python object with the same UUID to avoid mis-updates. This did not work in all cases, but it works in all cases now.
 
-**Breaking Changes:**
+### Breaking Changes
 
 - `cript.API()` objects no longer have functions related to JSON schema validation. Please use the new `DataSchema` class instead. The `DataSchema` class can be accessed via the `schema` property of the API class.
 - Indirect logging control via the API is defunct. Please use the direct access to the `logger` attribute of API classes to control logging output.
@@ -102,4 +188,4 @@ FAILED tests/nodes/subobjects/test_software.py::test_integration_software - Attr
 FAILED tests/nodes/subobjects/test_software_configuration.py::test_integration_software_configuration - AttributeError: 'list' object has no attribute 'starts with'
 FAILED tests/nodes/supporting_nodes/test_file.py::test_integration_file - AttributeError: 'list' object has no attribute 'starts with'
 ======================================================================== 23 failed, 100 passed, 1 skipped, 1 warning in 905.51s (0:15:05) =========================================================================
-```
+````
diff --git a/tests/api/test_search.py b/tests/api/test_search.py
@@ -62,8 +62,7 @@ def test_api_search_node_type(cript_api: cript.API) -> None:
  if mat["uuid"] in uuid_list:
  print(mat["uuid"])
 
- # TODO enable duplicate test
- # assert mat["uuid"] not in uuid_list
+ assert mat["uuid"] not in uuid_list
  assert i < 21