Merge pull request #90 from CURENT/misc #270
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| name: Code coverage | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| name: Report coverage | |
| runs-on: ubuntu-latest | |
| if: ${{ github.ref != 'refs/heads/misc' }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: 3.11 | |
| mamba-version: "*" | |
| miniforge-version: "latest" | |
| channels: conda-forge,defaults | |
| channel-priority: true | |
| activate-environment: anaconda-client-env | |
| - shell: bash -el {0} | |
| name: Install dependencies | |
| run: | | |
| mamba install -y nbmake pytest-xdist line_profiler # add'l packages for notebook tests. | |
| mamba install --file requirements.txt --file requirements-extra.txt | |
| python -m pip install -e . | |
| - shell: bash -el {0} | |
| name: Test with pytest and collect coverage | |
| run: | | |
| pytest --cov=./ --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Check secret presence | |
| id: check_secret | |
| run: | | |
| echo "is_set=false" >> $GITHUB_OUTPUT | |
| if [ ! -z "${{ secrets.CODACY_PROJECT_TOKEN }}" ]; then | |
| echo "is_set=true" >> $GITHUB_OUTPUT | |
| fi | |
| - name: Upload coverage to Codacy | |
| if: steps.check_secret.outputs.is_set == 'true' | |
| uses: codacy/codacy-coverage-reporter-action@v1.3.0 | |
| with: | |
| project-token: ${{ secrets.CODACY_PROJECT_TOKEN }} | |
| coverage-reports: coverage.xml | |
| env: | |
| CODACY_PROJECT_TOKEN: ${{ secrets.CODACY_PROJECT_TOKEN }} |