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@gregdenay gregdenay released this 24 Feb 12:58
· 34 commits to master since this release
1.6.4
64d777e

1.6.4

Benchmarking paper for 16S Metabarcoding of meat products is online:

Denay, G.; Preckel, L.; Petersen, H.; Pietsch, K.; Wöhlke, A.; Brünen-Nieweler, C.
Benchmarking and Validation of a Bioinformatics Workflow for Meat Species Identification Using 16S rDNA Metabarcoding.
Foods 2023, 12, 968. https://doi.org/10.3390/foods12050968

New features

  • It is now possible to filter specific sequences form the database using a list of accession provided in a text file using the seq_blocklist parameter (#60).

Improvements

  • Taxa names are now displayed in the benchmarking report
  • Fixed many typos and errors in the documentation
  • Improved report aesthetics
  • Improved the fetch_nt_blast.sh script to make it easier to resume interupted processes, also more robust

Fixes

  • Fixed confusion matrix calculation when the expected taxid rank is above the target rank
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