The CellTrackingChallenge Mastodon Baseline

In order to link existing segmentation images, both 2D and 3D and stored according to the CellTrackingChallenge standard, with Mastodon one can use the Fiji plugin Baseline Mastodon CTC tracking.

Obtaining the plugin (into new or existing Fiji installation):

This plugin is freely available from Fiji update sites:

1. Open Fiji
2. Click menus: 'Help' -> 'Update...'
3. Click 'Manage update sites' in the opened 'ImageJ Updater' dialog
4. Mark the 'Mastodon' and 'CellTrackingChallenge' checkboxes
5. Click 'Apply and Close' to close the dialog
6. After Fiji restart, one can find the plugin in the Fiji menus:

About

This is a repository with Java source codes of the Fiji tools related to the Cell Tracking Challenge and to Mastodon. The original source codes are available from Mastodon github sites.

The tools were developed and the page is maintained by Vladimír Ulman.

Contact < vladimir.ulman při vsb.cz > for help on how to use it.

License

The tools are licensed with the BSD 2-Clause License.