Script for EMBLEM (Epigenome and Mitochondrial Barcode of Lineage from Endogenous Mutations)

Version: 1

Description: This repository contains scripts to process the mitochondrial mutations and infere the lineage relationship among single cells. It bases on the a primary processing pipeline for scATAC-seq (https://github.com/ChangLab/ATAC_mito_sc)

Data: Dec-03-2018

Author: jinxu9@stanford.edu or xujin937@gmail.com

Installing

No specific dependence need for perl scripts. The following R package will need to make the plot. UpSetR ggplot2 reshape

Running the scripts

Only input folder or files need to be changed