Merge branch 'master' of https://github.com/Christiaanvandertol/Fluspect

README.md

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+# Fluspect
+Fluspect simulates leaf reflectance (R), transmittance (T) and fluorescence. With this code you can fit R and T to hyperspectral measurements.
+
+With this program, you can retrieve leaf structural parameters from hyperspectral leaf level measurements by inversion of Fluspect.
+
+The model code is in the directory 'Fluspect_retrievals/'
+
+
+Step 1:
+Place your measurement data in 'data/measured/'
+: a file with wavelengths, another with reflectance and a third with transmittance transmittance data
+
+Step 2. Edit and save input_data.xlsx.
+- Specify how the measurements can be loaded. By default, the example data are loaded.
+- Specify which parameters to tune
+- Specify which output to tune (reflectance, transmittance, or both)
+- Specify initial parameter values
+
+Step 4. 
+Run the script 'master' from Matlab
+The fitted parameters are stored in a structure 'leafbio'.
+The fittes spectra are stored in a structure 'leafopt'.
+Type 'leafbio', enter, to inspect the fitted parameters.
+
+The output is also stored in a directory specified in the input spreadsheet.