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IQ-TREE version 1.6.9
Bugfixes:
- IMPORTANT: Incorrect AU test p-values with partition models, introduced in v1.6.6 (reported by Ales Bucek).
- Crash in ModelFinder when having codon partitions with different genetic codes (reported by Morgan Jackson).
- Crash with multiple runs option (
--runs
) and-bnni
(reported by Vanessa Vera Fain).
Other changes:
- Better error checking for nexus partition file to prevent mis-specifying comma and semi-colon (reported by Denis Jacob Machado).
- Safe writing checkpoint file via a temporary file (reported by Giuseppe Aprea and thanks Heiko).
-rcluster-max
activates relaxed clustering algorithm without having to specify-rcluster
.--no-outfiles
suppress .treefile as expected (reported by Cecile Ane).