Merge pull request #2663 from CliMA/ck/update_deps

Update dependencies

Project.toml

@@ -65,7 +65,7 @@ IntervalSets = "0.5, 0.6, 0.7"
 Krylov = "0.9"
 LinearAlgebra = "1"
 Logging = "1"
-NCDatasets = "0.13.1, 0.14"
+NCDatasets = "0.13.1, =0.14.1"
 NVTX = "0.3"
 Pkg = "1.8"
 Printf = "1"

docs/Manifest.toml

@@ -48,9 +48,9 @@ weakdeps = ["StaticArrays"]
 
 [[deps.ArgParse]]
 deps = ["Logging", "TextWrap"]
-git-tree-sha1 = "3102bce13da501c9104df33549f511cd25264d7d"
+git-tree-sha1 = "d4eccacaa3a632e8717556479d45502af44b4c17"
 uuid = "c7e460c6-2fb9-53a9-8c5b-16f535851c63"
-version = "1.1.4"
+version = "1.1.5"
 
 [[deps.ArgTools]]
 uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
@@ -80,9 +80,9 @@ version = "7.7.0"
 
 [[deps.ArrayLayouts]]
 deps = ["FillArrays", "LinearAlgebra"]
-git-tree-sha1 = "f5c3f5584f14322a0bd73362fd88b589dabd4019"
+git-tree-sha1 = "64d582bcb9c93ac741234789eeb4f16812413efb"
 uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
-version = "1.5.3"
+version = "1.6.0"
 weakdeps = ["SparseArrays"]
 
     [deps.ArrayLayouts.extensions]
@@ -123,9 +123,9 @@ version = "0.4.2"
 
 [[deps.BandedMatrices]]
 deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
-git-tree-sha1 = "27baf04c642465b4289179f29bb7127f0673d4f1"
+git-tree-sha1 = "931f3f49902e9b6b527fd7cd02d1cd7b4a84264c"
 uuid = "aae01518-5342-5314-be14-df237901396f"
-version = "1.4.0"
+version = "1.5.0"
 weakdeps = ["SparseArrays"]
 
     [deps.BandedMatrices.extensions]
@@ -188,9 +188,9 @@ version = "0.1.2"
 
 [[deps.CLIMAParameters]]
 deps = ["DocStringExtensions", "TOML", "Test"]
-git-tree-sha1 = "ccfac72eed3ccf27ad086564059cab9d64567c7d"
+git-tree-sha1 = "cf4f5ee75576ae855eca7da064540ce40b9a04c1"
 uuid = "6eacf6c3-8458-43b9-ae03-caf5306d3d53"
-version = "0.8.5"
+version = "0.8.6"
 
 [[deps.CPUSummary]]
 deps = ["CpuId", "IfElse", "PrecompileTools", "Static"]
@@ -229,9 +229,9 @@ version = "0.10.1+0"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra"]
-git-tree-sha1 = "1287e3872d646eed95198457873249bd9f0caed2"
+git-tree-sha1 = "ad25e7d21ce10e01de973cdc68ad0f850a953c52"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "1.20.1"
+version = "1.21.1"
 weakdeps = ["SparseArrays"]
 
     [deps.ChainRulesCore.extensions]
@@ -260,10 +260,10 @@ weakdeps = ["Krylov"]
     KrylovExt = "Krylov"
 
 [[deps.ClimaTimeSteppers]]
-deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
-git-tree-sha1 = "40edb50016a5db1a3862dd6e8f76e37c0fbf4f07"
+deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
+git-tree-sha1 = "216385dda9966d820b484f399b90447f073893a6"
 uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
-version = "0.7.15"
+version = "0.7.16"
 
 [[deps.CloseOpenIntervals]]
 deps = ["Static", "StaticArrayInterface"]
@@ -345,9 +345,9 @@ version = "4.1.1"
 
 [[deps.CubedSphere]]
 deps = ["Elliptic", "FFTW", "Printf", "ProgressBars", "SpecialFunctions", "TaylorSeries", "Test"]
-git-tree-sha1 = "253193dfb0384646936c5ff3230b27a20d91261e"
+git-tree-sha1 = "10134667d7d3569b191a65801514271b8a93b292"
 uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb"
-version = "0.2.4"
+version = "0.2.5"
 
 [[deps.DataAPI]]
 git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
@@ -395,9 +395,9 @@ version = "0.1.0+0"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"]
-git-tree-sha1 = "6af33c2eb7478db06bcf5c810e6f3dda53aac2ac"
+git-tree-sha1 = "fefc2eeabecb745f1b1e1f91634381f7c81bd75d"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.146.0"
+version = "6.146.1"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseChainRulesCoreExt = "ChainRulesCore"
@@ -446,10 +446,10 @@ uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
 version = "1.15.1"
 
 [[deps.DiskArrays]]
-deps = ["OffsetArrays"]
-git-tree-sha1 = "1bfa9de80f35ac63c6c381b2d43c590875896a1f"
+deps = ["LRUCache", "OffsetArrays"]
+git-tree-sha1 = "ef25c513cad08d7ebbed158c91768ae32f308336"
 uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3"
-version = "0.3.22"
+version = "0.3.23"
 
 [[deps.Distances]]
 deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
@@ -618,9 +618,9 @@ version = "0.1.3"
 
 [[deps.Functors]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545"
+git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b"
 uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196"
-version = "0.4.5"
+version = "0.4.7"
 
 [[deps.Future]]
 deps = ["Random"]
@@ -744,13 +744,13 @@ version = "0.15.1"
     Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
 
 [[deps.IntervalSets]]
-deps = ["Dates", "Random"]
-git-tree-sha1 = "3d8866c029dd6b16e69e0d4a939c4dfcb98fac47"
+git-tree-sha1 = "581191b15bcb56a2aa257e9c160085d0f128a380"
 uuid = "8197267c-284f-5f27-9208-e0e47529a953"
-version = "0.7.8"
-weakdeps = ["Statistics"]
+version = "0.7.9"
+weakdeps = ["Random", "Statistics"]
 
     [deps.IntervalSets.extensions]
+    IntervalSetsRandomExt = "Random"
     IntervalSetsStatisticsExt = "Statistics"
 
 [[deps.InvertedIndices]]
@@ -822,9 +822,9 @@ version = "0.9.5"
 
 [[deps.KrylovKit]]
 deps = ["ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Printf"]
-git-tree-sha1 = "1a5e1d9941c783b0119897d29f2eb665d876ecf3"
+git-tree-sha1 = "5cebb47f472f086f7dd31fb8e738a8db728f1f84"
 uuid = "0b1a1467-8014-51b9-945f-bf0ae24f4b77"
-version = "0.6.0"
+version = "0.6.1"
 
 [[deps.LDLFactorizations]]
 deps = ["AMD", "LinearAlgebra", "SparseArrays", "Test"]
@@ -834,25 +834,34 @@ version = "0.10.1"
 
 [[deps.LLVM]]
 deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"]
-git-tree-sha1 = "cb4619f7353fc62a1a22ffa3d7ed9791cfb47ad8"
+git-tree-sha1 = "9e70165cca7459d25406367f0c55e517a9a7bfe7"
 uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
-version = "6.4.2"
+version = "6.5.0"
 weakdeps = ["BFloat16s"]
 
     [deps.LLVM.extensions]
     BFloat16sExt = "BFloat16s"
 
 [[deps.LLVMExtra_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "98eaee04d96d973e79c25d49167668c5c8fb50e2"
+git-tree-sha1 = "114e3a48f13d4c18ddd7fd6a00107b4b96f60f9c"
 uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
-version = "0.0.27+1"
+version = "0.0.28+0"
 
 [[deps.LLVMLoopInfo]]
 git-tree-sha1 = "2e5c102cfc41f48ae4740c7eca7743cc7e7b75ea"
 uuid = "8b046642-f1f6-4319-8d3c-209ddc03c586"
 version = "1.0.0"
 
+[[deps.LRUCache]]
+git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59"
+uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637"
+version = "1.6.1"
+weakdeps = ["Serialization"]
+
+    [deps.LRUCache.extensions]
+    SerializationExt = ["Serialization"]
+
 [[deps.LaTeXStrings]]
 git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec"
 uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
@@ -1193,9 +1202,9 @@ version = "1.4.3"
 
 [[deps.PreallocationTools]]
 deps = ["Adapt", "ArrayInterface", "ForwardDiff"]
-git-tree-sha1 = "64bb68f76f789f5fe5930a80af310f19cdafeaed"
+git-tree-sha1 = "b6665214f2d0739f2d09a17474dd443b9139784a"
 uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46"
-version = "0.4.17"
+version = "0.4.20"
 
     [deps.PreallocationTools.extensions]
     PreallocationToolsReverseDiffExt = "ReverseDiff"
@@ -1279,12 +1288,13 @@ version = "1.3.4"
 
 [[deps.RecursiveArrayTools]]
 deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "5a904ad526cc9a2c5b464f6642ce9dd230fd69b6"
+git-tree-sha1 = "2bd309f5171a628efdf5309361cd8a779b9e63a9"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "3.7.0"
+version = "3.8.0"
 
     [deps.RecursiveArrayTools.extensions]
     RecursiveArrayToolsFastBroadcastExt = "FastBroadcast"
+    RecursiveArrayToolsForwardDiffExt = "ForwardDiff"
     RecursiveArrayToolsMeasurementsExt = "Measurements"
     RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements"
     RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"]
@@ -1293,6 +1303,7 @@ version = "3.7.0"
 
     [deps.RecursiveArrayTools.weakdeps]
     FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898"
+    ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
     Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7"
     MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca"
     ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
@@ -1339,12 +1350,13 @@ version = "0.1.0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"]
-git-tree-sha1 = "535bb76be2c1090a09767b18b160f5729ad12aff"
+git-tree-sha1 = "850d187a1123683aa7e593d474155e132584fb78"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.23.0"
+version = "2.24.0"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
+    SciMLBaseMakieExt = "Makie"
     SciMLBasePartialFunctionsExt = "PartialFunctions"
     SciMLBasePyCallExt = "PyCall"
     SciMLBasePythonCallExt = "PythonCall"
@@ -1354,6 +1366,7 @@ version = "2.23.0"
     [deps.SciMLBase.weakdeps]
     ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2"
     ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
+    Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
     PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b"
     PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
     PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d"
@@ -1417,9 +1430,9 @@ weakdeps = ["ChainRulesCore"]
 
 [[deps.Static]]
 deps = ["IfElse"]
-git-tree-sha1 = "f295e0a1da4ca425659c57441bcb59abb035a4bc"
+git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c"
 uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
-version = "0.8.8"
+version = "0.8.10"
 
 [[deps.StaticArrayInterface]]
 deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"]
@@ -1537,9 +1550,9 @@ version = "1.10.0"
 
 [[deps.TaylorSeries]]
 deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"]
-git-tree-sha1 = "9138fdc8ee4e3b8839eca696a76d15e16c9c7af0"
+git-tree-sha1 = "1c7170668366821b0c4c4fe03ee78f8d6cf36e2c"
 uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea"
-version = "0.15.4"
+version = "0.16.0"
 
     [deps.TaylorSeries.extensions]
     TaylorSeriesIAExt = "IntervalArithmetic"
@@ -1558,9 +1571,9 @@ version = "1.0.1"
 
 [[deps.Thermodynamics]]
 deps = ["DocStringExtensions", "KernelAbstractions", "Random", "RootSolvers"]
-git-tree-sha1 = "d3b8b0346aa5f101135fbe3cd62acaeb2074a50a"
+git-tree-sha1 = "090a50e507242bd6c85267645186260fe89a1cfe"
 uuid = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c"
-version = "0.11.6"
+version = "0.11.7"
 weakdeps = ["CLIMAParameters"]
 
     [deps.Thermodynamics.extensions]