Merge pull request #2201 from CliMA/ck/up_deps_cts

Fix CUDA compat, upgrade deps
CliMA · Oct 6, 2023 · bb4b1ed · bb4b1ed
2 parents fc5111b + e3215b1
commit bb4b1ed
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Showing 5 changed files with 67 additions and 64 deletions.
diff --git a/Project.toml b/Project.toml
@@ -54,7 +54,7 @@ ArgParse = "1"
 ArtifactWrappers = "0.2"
 AtmosphericProfilesLibrary = "0.1"
 CLIMAParameters = "0.7"
-CUDA = "4, 5"
+CUDA = "4"
 ClimaComms = "0.5"
 ClimaCore = "0.10"
 ClimaTimeSteppers = "0.7"

diff --git a/docs/Manifest.toml b/docs/Manifest.toml
@@ -266,9 +266,9 @@ version = "0.10.52"
 
 [[deps.ClimaTimeSteppers]]
 deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
-git-tree-sha1 = "6b8068a0d888e1ec83e3001526cb8050f2ef39fe"
+git-tree-sha1 = "0294e5f032a1d578094431082600e864eb8554cf"
 uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
-version = "0.7.13"
+version = "0.7.14"
 
 [[deps.CloseOpenIntervals]]
 deps = ["Static", "StaticArrayInterface"]
@@ -419,9 +419,9 @@ version = "0.1.0+0"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "22ab786efaef7b9ccb66a272d7cc2471bea76ba9"
+git-tree-sha1 = "96e97e5f6794c1c0d4309d64eaafacb80485da1d"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.130.4"
+version = "6.131.0"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseDistributionsExt = "Distributions"
@@ -471,12 +471,13 @@ version = "1.15.1"
 
 [[deps.Distances]]
 deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
-git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9"
+git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151"
 uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
-version = "0.10.9"
-weakdeps = ["SparseArrays"]
+version = "0.10.10"
+weakdeps = ["ChainRulesCore", "SparseArrays"]
 
     [deps.Distances.extensions]
+    DistancesChainRulesCoreExt = "ChainRulesCore"
     DistancesSparseArraysExt = "SparseArrays"
 
 [[deps.Distributed]]
@@ -976,10 +977,10 @@ uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125"
 version = "2.5.2"
 
 [[deps.LinearSolve]]
-deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
-git-tree-sha1 = "ba01f7a97d3d8bd711b2c00a8a68c887d8a85c9d"
+deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
+git-tree-sha1 = "55dc29b3fb5592d78abcdd18cfa0ec7ae324749e"
 uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
-version = "2.8.1"
+version = "2.9.0"
 
     [deps.LinearSolve.extensions]
     LinearSolveBlockDiagonalsExt = "BlockDiagonals"
@@ -989,7 +990,6 @@ version = "2.8.1"
     LinearSolveIterativeSolversExt = "IterativeSolvers"
     LinearSolveKernelAbstractionsExt = "KernelAbstractions"
     LinearSolveKrylovKitExt = "KrylovKit"
-    LinearSolveMKLExt = "MKL_jll"
     LinearSolveMetalExt = "Metal"
     LinearSolvePardisoExt = "Pardiso"
 
@@ -1001,7 +1001,6 @@ version = "2.8.1"
     IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153"
     KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
     KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77"
-    MKL_jll = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
     Metal = "dde4c033-4e86-420c-a63e-0dd931031962"
     Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2"
 
@@ -1342,9 +1341,9 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 
 [[deps.RRTMGP]]
 deps = ["Adapt", "CUDA", "ClimaComms", "DocStringExtensions", "GaussQuadrature", "Random", "StaticArrays"]
-git-tree-sha1 = "87ddffcc9520b7d721a03e2755412d8d6b674d5f"
+git-tree-sha1 = "52a01d4a1963925ec60c76413d8c557e153c5e5e"
 uuid = "a01a1ee8-cea4-48fc-987c-fc7878d79da1"
-version = "0.9.1"
+version = "0.9.2"
 
 [[deps.Random]]
 deps = ["SHA", "Serialization"]
@@ -1460,14 +1459,16 @@ version = "0.6.39"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "e7c518184850701c91df0e898241c07e03c7f367"
+git-tree-sha1 = "0842f7f77bf2d9546e0bbc543d03be3d53a30600"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.0.7"
+version = "2.1.0"
 
     [deps.SciMLBase.extensions]
+    PyCallExt = "PyCall"
     ZygoteExt = "Zygote"
 
     [deps.SciMLBase.weakdeps]
+    PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
     Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [[deps.SciMLNLSolve]]

diff --git a/examples/Manifest.toml b/examples/Manifest.toml
@@ -257,9 +257,9 @@ version = "1.0.5"
 
 [[deps.CairoMakie]]
 deps = ["Base64", "Cairo", "Colors", "FFTW", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools", "SHA"]
-git-tree-sha1 = "6f2fa27e8609b72e97e36ede7e6aa981d8c7c98d"
+git-tree-sha1 = "74384dc4aba2b377e22703e849154252930c434d"
 uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
-version = "0.10.10"
+version = "0.10.11"
 
 [[deps.Cairo_jll]]
 deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
@@ -335,9 +335,9 @@ version = "0.7.1"
 
 [[deps.ClimaTimeSteppers]]
 deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
-git-tree-sha1 = "6b8068a0d888e1ec83e3001526cb8050f2ef39fe"
+git-tree-sha1 = "0294e5f032a1d578094431082600e864eb8554cf"
 uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
-version = "0.7.13"
+version = "0.7.14"
 
 [[deps.CloseOpenIntervals]]
 deps = ["Static", "StaticArrayInterface"]
@@ -524,9 +524,9 @@ version = "0.1.0+0"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "22ab786efaef7b9ccb66a272d7cc2471bea76ba9"
+git-tree-sha1 = "96e97e5f6794c1c0d4309d64eaafacb80485da1d"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.130.4"
+version = "6.131.0"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseDistributionsExt = "Distributions"
@@ -576,12 +576,13 @@ version = "1.15.1"
 
 [[deps.Distances]]
 deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
-git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9"
+git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151"
 uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
-version = "0.10.9"
-weakdeps = ["SparseArrays"]
+version = "0.10.10"
+weakdeps = ["ChainRulesCore", "SparseArrays"]
 
     [deps.Distances.extensions]
+    DistancesChainRulesCoreExt = "ChainRulesCore"
     DistancesSparseArraysExt = "SparseArrays"
 
 [[deps.Distributed]]
@@ -1396,10 +1397,10 @@ uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125"
 version = "2.5.2"
 
 [[deps.LinearSolve]]
-deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
-git-tree-sha1 = "ba01f7a97d3d8bd711b2c00a8a68c887d8a85c9d"
+deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
+git-tree-sha1 = "55dc29b3fb5592d78abcdd18cfa0ec7ae324749e"
 uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
-version = "2.8.1"
+version = "2.9.0"
 
     [deps.LinearSolve.extensions]
     LinearSolveBlockDiagonalsExt = "BlockDiagonals"
@@ -1409,7 +1410,6 @@ version = "2.8.1"
     LinearSolveIterativeSolversExt = "IterativeSolvers"
     LinearSolveKernelAbstractionsExt = "KernelAbstractions"
     LinearSolveKrylovKitExt = "KrylovKit"
-    LinearSolveMKLExt = "MKL_jll"
     LinearSolveMetalExt = "Metal"
     LinearSolvePardisoExt = "Pardiso"
 
@@ -1421,7 +1421,6 @@ version = "2.8.1"
     IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153"
     KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
     KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77"
-    MKL_jll = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
     Metal = "dde4c033-4e86-420c-a63e-0dd931031962"
     Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2"
 
@@ -1513,15 +1512,15 @@ version = "0.5.11"
 
 [[deps.Makie]]
 deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "Match", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Setfield", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"]
-git-tree-sha1 = "cf10f4b9d09da50f124ab7bcb530e57f700328f0"
+git-tree-sha1 = "1d16d20279a145119899b4205258332f0fbeaa94"
 uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
-version = "0.19.10"
+version = "0.19.11"
 
 [[deps.MakieCore]]
-deps = ["Observables"]
-git-tree-sha1 = "17d51182db2667962bc7e1d18b74881d0d0adbe6"
+deps = ["Observables", "REPL"]
+git-tree-sha1 = "a94bf3fef9c690a2a4ac1d09d86a59ab89c7f8e4"
 uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
-version = "0.6.7"
+version = "0.6.8"
 
 [[deps.ManualMemory]]
 git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd"
@@ -2006,9 +2005,9 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 
 [[deps.RRTMGP]]
 deps = ["Adapt", "CUDA", "ClimaComms", "DocStringExtensions", "GaussQuadrature", "Random", "StaticArrays"]
-git-tree-sha1 = "87ddffcc9520b7d721a03e2755412d8d6b674d5f"
+git-tree-sha1 = "52a01d4a1963925ec60c76413d8c557e153c5e5e"
 uuid = "a01a1ee8-cea4-48fc-987c-fc7878d79da1"
-version = "0.9.1"
+version = "0.9.2"
 
 [[deps.Random]]
 deps = ["SHA", "Serialization"]
@@ -2152,14 +2151,16 @@ version = "0.6.39"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "e7c518184850701c91df0e898241c07e03c7f367"
+git-tree-sha1 = "0842f7f77bf2d9546e0bbc543d03be3d53a30600"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.0.7"
+version = "2.1.0"
 
     [deps.SciMLBase.extensions]
+    PyCallExt = "PyCall"
     ZygoteExt = "Zygote"
 
     [deps.SciMLBase.weakdeps]
+    PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
     Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [[deps.SciMLNLSolve]]

diff --git a/perf/Manifest.toml b/perf/Manifest.toml
@@ -268,9 +268,9 @@ version = "1.0.5"
 
 [[deps.CairoMakie]]
 deps = ["Base64", "Cairo", "Colors", "FFTW", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools", "SHA"]
-git-tree-sha1 = "6f2fa27e8609b72e97e36ede7e6aa981d8c7c98d"
+git-tree-sha1 = "74384dc4aba2b377e22703e849154252930c434d"
 uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
-version = "0.10.10"
+version = "0.10.11"
 
 [[deps.Cairo_jll]]
 deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
@@ -346,9 +346,9 @@ version = "0.7.1"
 
 [[deps.ClimaTimeSteppers]]
 deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
-git-tree-sha1 = "6b8068a0d888e1ec83e3001526cb8050f2ef39fe"
+git-tree-sha1 = "0294e5f032a1d578094431082600e864eb8554cf"
 uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
-version = "0.7.13"
+version = "0.7.14"
 
 [[deps.CloseOpenIntervals]]
 deps = ["Static", "StaticArrayInterface"]
@@ -541,9 +541,9 @@ version = "0.1.0+0"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "22ab786efaef7b9ccb66a272d7cc2471bea76ba9"
+git-tree-sha1 = "96e97e5f6794c1c0d4309d64eaafacb80485da1d"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.130.4"
+version = "6.131.0"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseDistributionsExt = "Distributions"
@@ -605,12 +605,13 @@ version = "1.15.1"
 
 [[deps.Distances]]
 deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
-git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9"
+git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151"
 uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
-version = "0.10.9"
-weakdeps = ["SparseArrays"]
+version = "0.10.10"
+weakdeps = ["ChainRulesCore", "SparseArrays"]
 
     [deps.Distances.extensions]
+    DistancesChainRulesCoreExt = "ChainRulesCore"
     DistancesSparseArraysExt = "SparseArrays"
 
 [[deps.Distributed]]
@@ -1448,10 +1449,10 @@ uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125"
 version = "2.5.2"
 
 [[deps.LinearSolve]]
-deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
-git-tree-sha1 = "ba01f7a97d3d8bd711b2c00a8a68c887d8a85c9d"
+deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
+git-tree-sha1 = "55dc29b3fb5592d78abcdd18cfa0ec7ae324749e"
 uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
-version = "2.8.1"
+version = "2.9.0"
 
     [deps.LinearSolve.extensions]
     LinearSolveBlockDiagonalsExt = "BlockDiagonals"
@@ -1461,7 +1462,6 @@ version = "2.8.1"
     LinearSolveIterativeSolversExt = "IterativeSolvers"
     LinearSolveKernelAbstractionsExt = "KernelAbstractions"
     LinearSolveKrylovKitExt = "KrylovKit"
-    LinearSolveMKLExt = "MKL_jll"
     LinearSolveMetalExt = "Metal"
     LinearSolvePardisoExt = "Pardiso"
 
@@ -1473,7 +1473,6 @@ version = "2.8.1"
     IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153"
     KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
     KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77"
-    MKL_jll = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
     Metal = "dde4c033-4e86-420c-a63e-0dd931031962"
     Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2"
 
@@ -1565,15 +1564,15 @@ version = "0.5.11"
 
 [[deps.Makie]]
 deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "Match", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Setfield", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"]
-git-tree-sha1 = "cf10f4b9d09da50f124ab7bcb530e57f700328f0"
+git-tree-sha1 = "1d16d20279a145119899b4205258332f0fbeaa94"
 uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
-version = "0.19.10"
+version = "0.19.11"
 
 [[deps.MakieCore]]
-deps = ["Observables"]
-git-tree-sha1 = "17d51182db2667962bc7e1d18b74881d0d0adbe6"
+deps = ["Observables", "REPL"]
+git-tree-sha1 = "a94bf3fef9c690a2a4ac1d09d86a59ab89c7f8e4"
 uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
-version = "0.6.7"
+version = "0.6.8"
 
 [[deps.ManualMemory]]
 git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd"
@@ -2070,9 +2069,9 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 
 [[deps.RRTMGP]]
 deps = ["Adapt", "CUDA", "ClimaComms", "DocStringExtensions", "GaussQuadrature", "Random", "StaticArrays"]
-git-tree-sha1 = "87ddffcc9520b7d721a03e2755412d8d6b674d5f"
+git-tree-sha1 = "52a01d4a1963925ec60c76413d8c557e153c5e5e"
 uuid = "a01a1ee8-cea4-48fc-987c-fc7878d79da1"
-version = "0.9.1"
+version = "0.9.2"
 
 [[deps.Random]]
 deps = ["SHA", "Serialization"]
@@ -2222,14 +2221,16 @@ version = "0.6.39"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "e7c518184850701c91df0e898241c07e03c7f367"
+git-tree-sha1 = "0842f7f77bf2d9546e0bbc543d03be3d53a30600"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.0.7"
+version = "2.1.0"
 
     [deps.SciMLBase.extensions]
+    PyCallExt = "PyCall"
     ZygoteExt = "Zygote"
 
     [deps.SciMLBase.weakdeps]
+    PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
     Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [[deps.SciMLNLSolve]]

diff --git a/regression_tests/ref_counter.jl b/regression_tests/ref_counter.jl
@@ -1 +1 @@
-131
+132