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Merge pull request #2581 from CliMA/ck/up_thermo
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Update dependencies
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@charleskawczynski
charleskawczynski authored Jan 31, 2024
2 parents d9272d1 + d1cadb6 commit df40a30
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Showing 8 changed files with 374 additions and 183 deletions.
6 changes: 3 additions & 3 deletions Project.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -46,7 +46,7 @@ ArgParse = "1"
ArtifactWrappers = "0.2"
Artifacts = "1"
AtmosphericProfilesLibrary = "0.1"
CLIMAParameters = "0.8.1"
CLIMAParameters = "0.8.4"
CPUSummary = "0.2"
ClimaComms = "0.5.6"
ClimaCore = "0.11.9"
Expand Down Expand Up @@ -76,8 +76,8 @@ SciMLBase = "1, 2"
StaticArrays = "1"
Statistics = "1"
StatsBase = "0.33, 0.34"
SurfaceFluxes = "0.9.0"
Thermodynamics = "0.11.3"
SurfaceFluxes = "0.9.1"
Thermodynamics = "0.11"
YAML = "0.4"
julia = "1.7"

Expand Down
133 changes: 97 additions & 36 deletions docs/Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -163,6 +163,12 @@ git-tree-sha1 = "fc69cbdb4277042f72c6e59cbc7024fbe3034b89"
uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e"
version = "0.16.39"

[[deps.Blosc_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Lz4_jll", "Zlib_jll", "Zstd_jll"]
git-tree-sha1 = "19b98ee7e3db3b4eff74c5c9c72bf32144e24f10"
uuid = "0b7ba130-8d10-5ba8-a3d6-c5182647fed9"
version = "1.21.5+0"

[[deps.Bzip2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd"
Expand All @@ -182,9 +188,9 @@ version = "0.1.2"

[[deps.CLIMAParameters]]
deps = ["DocStringExtensions", "TOML", "Test"]
git-tree-sha1 = "a085251dfe4b0f732fe2b65d5354e6af91a8e931"
git-tree-sha1 = "ccfac72eed3ccf27ad086564059cab9d64567c7d"
uuid = "6eacf6c3-8458-43b9-ae03-caf5306d3d53"
version = "0.7.26"
version = "0.8.5"

[[deps.CPUSummary]]
deps = ["CpuId", "IfElse", "PrecompileTools", "Static"]
Expand All @@ -211,9 +217,9 @@ version = "0.7.0+1"

[[deps.CUDA_Runtime_Discovery]]
deps = ["Libdl"]
git-tree-sha1 = "bcc4a23cbbd99c8535a5318455dcf0f2546ec536"
git-tree-sha1 = "2cb12f6b2209f40a4b8967697689a47c50485490"
uuid = "1af6417a-86b4-443c-805f-a4643ffb695f"
version = "0.2.2"
version = "0.2.3"

[[deps.CUDA_Runtime_jll]]
deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
Expand All @@ -223,9 +229,9 @@ version = "0.10.1+0"

[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra"]
git-tree-sha1 = "c1deebd76f7a443d527fc0430d5758b8b2112ed8"
git-tree-sha1 = "1287e3872d646eed95198457873249bd9f0caed2"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
version = "1.19.1"
version = "1.20.1"
weakdeps = ["SparseArrays"]

[deps.ChainRulesCore.extensions]
Expand All @@ -245,9 +251,9 @@ version = "0.5.6"

[[deps.ClimaCore]]
deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "Unrolled"]
git-tree-sha1 = "e43923b57aa6abea8df2b59e1318f5598e715bf0"
git-tree-sha1 = "541bf25a8adc3c7ddf8d45a96149964f5cfbb074"
uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
version = "0.11.8"
version = "0.11.9"
weakdeps = ["Krylov"]

[deps.ClimaCore.extensions]
Expand All @@ -267,9 +273,9 @@ version = "0.1.12"

[[deps.CloudMicrophysics]]
deps = ["CLIMAParameters", "DocStringExtensions", "ForwardDiff", "RootSolvers", "SpecialFunctions", "Thermodynamics"]
git-tree-sha1 = "a6993c57af74e2e0f2191b556178cc8d8c0df9d6"
git-tree-sha1 = "0c0be34fad945b95fd3c94cca9003bacae990ccf"
uuid = "6a9e3e04-43cd-43ba-94b9-e8782df3c71b"
version = "0.15.1"
version = "0.15.2"

[[deps.ColorTypes]]
deps = ["FixedPointNumbers", "Random"]
Expand All @@ -285,9 +291,9 @@ version = "0.12.10"

[[deps.CommonDataModel]]
deps = ["CFTime", "DataStructures", "Dates", "Preferences", "Printf", "Statistics"]
git-tree-sha1 = "349d9b36250ec19a7da18f838434db7d76c2f131"
git-tree-sha1 = "a132d267a055e8173a4a8e83d0d4ddcaeae70f91"
uuid = "1fbeeb36-5f17-413c-809b-666fb144f157"
version = "0.3.2"
version = "0.3.4"

[[deps.CommonSolve]]
git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c"
Expand Down Expand Up @@ -344,9 +350,9 @@ uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb"
version = "0.2.4"

[[deps.DataAPI]]
git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c"
git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.15.0"
version = "1.16.0"

[[deps.DataFrames]]
deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
Expand Down Expand Up @@ -620,6 +626,11 @@ version = "0.4.5"
deps = ["Random"]
uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"

[[deps.GMP_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d"
version = "6.2.1+6"

[[deps.GPUArrays]]
deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"]
git-tree-sha1 = "85d7fb51afb3def5dcb85ad31c3707795c8bccc1"
Expand Down Expand Up @@ -661,6 +672,12 @@ git-tree-sha1 = "b30c473c97fcc1e1e44fab8f3e88fd1b89c9e9d1"
uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb"
version = "2.43.0+0"

[[deps.GnuTLS_jll]]
deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Nettle_jll", "P11Kit_jll", "Pkg", "Zlib_jll"]
git-tree-sha1 = "266fe9b2335527cbf569ba4fd0979e3d8c6fd491"
uuid = "0951126a-58fd-58f1-b5b3-b08c7c4a876d"
version = "3.7.8+1"

[[deps.HDF5]]
deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"]
git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53"
Expand All @@ -673,9 +690,9 @@ weakdeps = ["MPI"]

[[deps.HDF5_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
git-tree-sha1 = "8156325170d6763b5494c072ac4754214db3e669"
git-tree-sha1 = "e4591176488495bf44d7456bd73179d87d5e6eab"
uuid = "0234f1f7-429e-5d53-9886-15a909be8d59"
version = "1.14.3+0"
version = "1.14.3+1"

[[deps.IOCapture]]
deps = ["Logging", "Random"]
Expand All @@ -696,9 +713,13 @@ version = "1.4.0"

[[deps.Insolation]]
deps = ["Artifacts", "Dates", "DelimitedFiles", "Interpolations"]
git-tree-sha1 = "2679907708edd9bbe2bd98585e575b48f17902c8"
git-tree-sha1 = "2aaf998568ab59643cefb0fc17eba42f9d5bef37"
uuid = "e98cc03f-d57e-4e3c-b70c-8d51efe9e0d8"
version = "0.8.2"
version = "0.9.0"
weakdeps = ["CLIMAParameters"]

[deps.Insolation.extensions]
CreateParametersExt = "CLIMAParameters"

[[deps.IntelOpenMP_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
Expand Down Expand Up @@ -930,6 +951,12 @@ version = "0.3.26"
[[deps.Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"

[[deps.Lz4_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "6c26c5e8a4203d43b5497be3ec5d4e0c3cde240a"
uuid = "5ced341a-0733-55b8-9ab6-a4889d929147"
version = "1.9.4+0"

[[deps.MKL_jll]]
deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"]
git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0"
Expand Down Expand Up @@ -1055,10 +1082,16 @@ uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
version = "1.0.2"

[[deps.NetCDF_jll]]
deps = ["Artifacts", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "XML2_jll", "Zlib_jll", "Zstd_jll"]
git-tree-sha1 = "10c612c81eaffdd6b7c28a45a554cdd9d2f40ff1"
deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenMPI_jll", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"]
git-tree-sha1 = "a8af1798e4eb9ff768ce7fdefc0e957097793f15"
uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3"
version = "400.902.208+0"
version = "400.902.209+0"

[[deps.Nettle_jll]]
deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "eca63e3847dad608cfa6a3329b95ef674c7160b4"
uuid = "4c82536e-c426-54e4-b420-14f461c4ed8b"
version = "3.7.2+0"

[[deps.NetworkOptions]]
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
Expand Down Expand Up @@ -1091,9 +1124,9 @@ version = "4.1.6+0"

[[deps.OpenSSL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f"
git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
version = "3.0.12+0"
version = "3.0.13+0"

[[deps.OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
Expand All @@ -1106,6 +1139,12 @@ git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
version = "1.6.3"

[[deps.P11Kit_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "2cd396108e178f3ae8dedbd8e938a18726ab2fbf"
uuid = "c2071276-7c44-58a7-b746-946036e04d0a"
version = "0.24.1+0"

[[deps.PCRE2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15"
Expand Down Expand Up @@ -1236,21 +1275,23 @@ version = "1.3.4"

[[deps.RecursiveArrayTools]]
deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
git-tree-sha1 = "dd7fc1923fde0cc6cdff451352d17924b0704ca1"
git-tree-sha1 = "5a904ad526cc9a2c5b464f6642ce9dd230fd69b6"
uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
version = "3.5.4"
version = "3.7.0"

[deps.RecursiveArrayTools.extensions]
RecursiveArrayToolsFastBroadcastExt = "FastBroadcast"
RecursiveArrayToolsMeasurementsExt = "Measurements"
RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements"
RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"]
RecursiveArrayToolsTrackerExt = "Tracker"
RecursiveArrayToolsZygoteExt = "Zygote"

[deps.RecursiveArrayTools.weakdeps]
FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898"
Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7"
MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca"
ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"

Expand Down Expand Up @@ -1294,9 +1335,9 @@ version = "0.1.0"

[[deps.SciMLBase]]
deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"]
git-tree-sha1 = "de41474ac529bf81598e064587421cc5ebc28fa0"
git-tree-sha1 = "e4344257d8a9dfc92e0fc113f0a5bababa8d2082"
uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
version = "2.20.0"
version = "2.22.0"

[deps.SciMLBase.extensions]
SciMLBaseChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -1389,9 +1430,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"]

[[deps.StaticArrays]]
deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"]
git-tree-sha1 = "f68dd04d131d9a8a8eb836173ee8f105c360b0c5"
git-tree-sha1 = "7b0e9c14c624e435076d19aea1e5cbdec2b9ca37"
uuid = "90137ffa-7385-5640-81b9-e52037218182"
version = "1.9.1"
version = "1.9.2"
weakdeps = ["ChainRulesCore", "Statistics"]

[deps.StaticArrays.extensions]
Expand Down Expand Up @@ -1454,15 +1495,19 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c"
version = "7.2.1+1"

[[deps.SurfaceFluxes]]
deps = ["CLIMAParameters", "DocStringExtensions", "RootSolvers", "Thermodynamics"]
git-tree-sha1 = "a167924897731ee57ef0197bb19357bfc2d007bc"
deps = ["DocStringExtensions", "RootSolvers", "Thermodynamics"]
git-tree-sha1 = "6431256ee7c06ed2900fd46688f355e5a43e90eb"
uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f"
version = "0.8.1"
version = "0.9.1"
weakdeps = ["CLIMAParameters"]

[deps.SurfaceFluxes.extensions]
CreateParametersExt = "CLIMAParameters"

[[deps.SymbolicIndexingInterface]]
git-tree-sha1 = "74502f408d99fc217a9d7cd901d9ffe45af892b1"
git-tree-sha1 = "b3103f4f50a3843e66297a2456921377c78f5e31"
uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5"
version = "0.3.3"
version = "0.3.5"

[[deps.TOML]]
deps = ["Dates"]
Expand Down Expand Up @@ -1509,9 +1554,13 @@ version = "1.0.1"

[[deps.Thermodynamics]]
deps = ["DocStringExtensions", "KernelAbstractions", "Random", "RootSolvers"]
git-tree-sha1 = "2de4b5ccc71baf3578959928c295a2fa13105db7"
git-tree-sha1 = "d3b8b0346aa5f101135fbe3cd62acaeb2074a50a"
uuid = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c"
version = "0.11.2"
version = "0.11.6"
weakdeps = ["CLIMAParameters"]

[deps.Thermodynamics.extensions]
CreateParametersExt = "CLIMAParameters"

[[deps.ThreadingUtilities]]
deps = ["ManualMemory"]
Expand Down Expand Up @@ -1582,6 +1631,12 @@ git-tree-sha1 = "801cbe47eae69adc50f36c3caec4758d2650741b"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
version = "2.12.2+0"

[[deps.XZ_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d"
uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800"
version = "5.4.5+0"

[[deps.YAML]]
deps = ["Base64", "Dates", "Printf", "StringEncodings"]
git-tree-sha1 = "e6330e4b731a6af7959673621e91645eb1356884"
Expand Down Expand Up @@ -1610,6 +1665,12 @@ deps = ["Artifacts", "Libdl"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.8.0+1"

[[deps.libzip_jll]]
deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"]
git-tree-sha1 = "9a6ac803f3c17fe7cf66430a8bfc7186800f08a4"
uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1"
version = "1.9.2+0"

[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
Expand Down
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