make density current plots

config/model_configs/box_density_current_test.yml

@@ -1,3 +1,4 @@
+reference_job_id: "les_box"
 initial_condition: "DryDensityCurrentProfile"
 config: "box"
 smagorinsky_lilly: true
@@ -17,5 +18,5 @@ prandtl_turbulent_neutral: 0.333
 dt_save_state_to_disk: "5secs"
 netcdf_interpolation_num_points: [40, 40, 80]
 diagnostics:
-  - short_name: [thetaa, wa, ua, ta, va, hfes, rhoa, rv, ha]
-    period: 5secs
+  - short_name: [wa, ua, va, ta, thetaa, ha]
+    period: 5secs 

examples/Manifest.toml

@@ -201,9 +201,9 @@ version = "0.1.6"
 
 [[deps.BlockArrays]]
 deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"]
-git-tree-sha1 = "d434647f798823bcae510aee0bc0401927f64391"
+git-tree-sha1 = "62551a412126a8c979febd1a05a986928719639e"
 uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e"
-version = "1.1.1"
+version = "1.2.0"
 weakdeps = ["BandedMatrices"]
 
     [deps.BlockArrays.extensions]
@@ -267,9 +267,9 @@ weakdeps = ["ChainRulesCore", "EnzymeCore", "SpecialFunctions"]
 
 [[deps.CUDA_Driver_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "ccd1e54610c222fadfd4737dac66bff786f63656"
+git-tree-sha1 = "14996d716a2eaaeccfc8d7bc854dd87fde720ac1"
 uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc"
-version = "0.10.3+0"
+version = "0.10.4+0"
 
 [[deps.CUDA_Runtime_Discovery]]
 deps = ["Libdl"]
@@ -279,9 +279,9 @@ version = "0.3.5"
 
 [[deps.CUDA_Runtime_jll]]
 deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "ed8a056a88f5b852df94046060f6770a57334728"
+git-tree-sha1 = "17f1536c600133f7c4113bae0a2d98dbf27c7ebc"
 uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2"
-version = "0.15.4+0"
+version = "0.15.5+0"
 
 [[deps.Cairo]]
 deps = ["Cairo_jll", "Colors", "Glib_jll", "Graphics", "Libdl", "Pango_jll"]
@@ -312,10 +312,10 @@ weakdeps = ["SparseArrays"]
     ChainRulesCoreSparseArraysExt = "SparseArrays"
 
 [[deps.ClimaAnalysis]]
-deps = ["Dates", "Interpolations", "NCDatasets", "NaNStatistics", "OrderedCollections", "Reexport", "Statistics", "Unitful"]
-git-tree-sha1 = "e746377ad9eb712b86ec60d4a047d933e71253b9"
+deps = ["Artifacts", "Dates", "Interpolations", "NCDatasets", "NaNStatistics", "OrderedCollections", "Reexport", "Statistics", "Unitful"]
+git-tree-sha1 = "b67f8f5f754fde6132bae1a2add06e51cf26227b"
 uuid = "29b5916a-a76c-4e73-9657-3c8fd22e65e6"
-version = "0.5.11"
+version = "0.5.12"
 
     [deps.ClimaAnalysis.extensions]
     ClimaAnalysisGeoMakieExt = "GeoMakie"
@@ -417,15 +417,14 @@ version = "0.7.38"
     StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 
 [[deps.ClimaUtilities]]
-deps = ["Artifacts", "Dates"]
-git-tree-sha1 = "f99f60059af1de49a24d16049dfa8d65e3d3907d"
+deps = ["Artifacts", "ClimaComms", "Dates"]
+git-tree-sha1 = "ae6e4d3223ecb29d3f3d9c5f82b622bae12f3bff"
 uuid = "b3f4f4ca-9299-4f7f-bd9b-81e1242a7513"
-version = "0.1.18"
-weakdeps = ["Adapt", "CUDA", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "Interpolations", "NCDatasets"]
+version = "0.1.19"
+weakdeps = ["Adapt", "CUDA", "ClimaCore", "ClimaCoreTempestRemap", "Interpolations", "NCDatasets"]
 
     [deps.ClimaUtilities.extensions]
-    ClimaUtilitiesClimaCommsCUDAExt = ["ClimaComms", "CUDA"]
-    ClimaUtilitiesClimaCommsExt = "ClimaComms"
+    ClimaUtilitiesCUDAExt = "CUDA"
     ClimaUtilitiesClimaCoreExt = "ClimaCore"
     ClimaUtilitiesClimaCoreInterpolationsExt = ["ClimaCore", "Interpolations"]
     ClimaUtilitiesClimaCoreNCDatasetsExt = ["ClimaCore", "NCDatasets"]
@@ -613,10 +612,10 @@ deps = ["Printf"]
 uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
 
 [[deps.DelaunayTriangulation]]
-deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "PrecompileTools", "Random"]
-git-tree-sha1 = "ffc2e0358599a6a0db3a5c0142a9fa3dc5694f65"
+deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "Random"]
+git-tree-sha1 = "e1371a23fd9816080c828d0ce04373857fe73d33"
 uuid = "927a84f5-c5f4-47a5-9785-b46e178433df"
-version = "1.6.2"
+version = "1.6.3"
 
 [[deps.DelimitedFiles]]
 deps = ["Mmap"]
@@ -719,9 +718,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
 version = "1.0.4"
 
 [[deps.EnzymeCore]]
-git-tree-sha1 = "e333ffd38ecffcf5c6c2dafd10788404ac46fb9f"
+git-tree-sha1 = "2c366bfe21936e8f44b607eb86a1f4c110f0d841"
 uuid = "f151be2c-9106-41f4-ab19-57ee4f262869"
-version = "0.8.6"
+version = "0.8.7"
 weakdeps = ["Adapt"]
 
     [deps.EnzymeCore.extensions]
@@ -901,9 +900,9 @@ version = "4.1.1"
 
 [[deps.FreeType2_jll]]
 deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"]
-git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc"
+git-tree-sha1 = "fa8e19f44de37e225aa0f1695bc223b05ed51fb4"
 uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7"
-version = "2.13.2+0"
+version = "2.13.3+0"
 
 [[deps.FreeTypeAbstraction]]
 deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"]
@@ -932,11 +931,6 @@ version = "0.1.3"
 deps = ["Random"]
 uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
 
-[[deps.GMP_jll]]
-deps = ["Artifacts", "Libdl"]
-uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d"
-version = "6.2.1+6"
-
 [[deps.GPUArrays]]
 deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"]
 git-tree-sha1 = "62ee71528cca49be797076a76bdc654a170a523e"
@@ -997,21 +991,15 @@ version = "0.1.0"
 
 [[deps.Glib_jll]]
 deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"]
-git-tree-sha1 = "674ff0db93fffcd11a3573986e550d66cd4fd71f"
+git-tree-sha1 = "b36c7e110080ae48fdef61b0c31e6b17ada23b33"
 uuid = "7746bdde-850d-59dc-9ae8-88ece973131d"
-version = "2.80.5+0"
+version = "2.82.2+0"
 
 [[deps.Glob]]
 git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496"
 uuid = "c27321d9-0574-5035-807b-f59d2c89b15c"
 version = "1.3.1"
 
-[[deps.GnuTLS_jll]]
-deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Nettle_jll", "P11Kit_jll", "Zlib_jll"]
-git-tree-sha1 = "383db7d3f900f4c1f47a8a04115b053c095e48d3"
-uuid = "0951126a-58fd-58f1-b5b3-b08c7c4a876d"
-version = "3.8.4+0"
-
 [[deps.Graphics]]
 deps = ["Colors", "LinearAlgebra", "NaNMath"]
 git-tree-sha1 = "a641238db938fff9b2f60d08ed9030387daf428c"
@@ -1020,9 +1008,9 @@ version = "1.1.3"
 
 [[deps.Graphite2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011"
+git-tree-sha1 = "01979f9b37367603e2848ea225918a3b3861b606"
 uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472"
-version = "1.3.14+0"
+version = "1.3.14+1"
 
 [[deps.GridLayoutBase]]
 deps = ["GeometryBasics", "InteractiveUtils", "Observables"]
@@ -1238,9 +1226,9 @@ version = "0.9.12"
 
 [[deps.JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"]
-git-tree-sha1 = "14030aa1cb6b5551f425b0e6d0f3cb749a152965"
+git-tree-sha1 = "f1a1c1037af2a4541ea186b26b0c0e7eeaad232b"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.5.9"
+version = "0.5.10"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
@@ -1445,9 +1433,9 @@ version = "1.17.0+1"
 
 [[deps.Libmount_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e"
+git-tree-sha1 = "84eef7acd508ee5b3e956a2ae51b05024181dee0"
 uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
-version = "2.40.1+0"
+version = "2.40.2+0"
 
 [[deps.Libtiff_jll]]
 deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"]
@@ -1457,9 +1445,9 @@ version = "4.7.0+0"
 
 [[deps.Libuuid_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807"
+git-tree-sha1 = "edbf5309f9ddf1cab25afc344b1e8150b7c832f9"
 uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700"
-version = "2.40.1+0"
+version = "2.40.2+0"
 
 [[deps.LightXML]]
 deps = ["Libdl", "XML2_jll"]
@@ -1514,9 +1502,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
 [[deps.LoweredCodeUtils]]
 deps = ["JuliaInterpreter"]
-git-tree-sha1 = "260dc274c1bc2cb839e758588c63d9c8b5e639d1"
+git-tree-sha1 = "688d6d9e098109051ae33d126fcfc88c4ce4a021"
 uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b"
-version = "3.0.5"
+version = "3.1.0"
 
 [[deps.Lz4_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1691,12 +1679,6 @@ git-tree-sha1 = "d92b107dbb887293622df7697a2223f9f8176fcd"
 uuid = "f09324ee-3d7c-5217-9330-fc30815ba969"
 version = "1.1.1"
 
-[[deps.Nettle_jll]]
-deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "eca63e3847dad608cfa6a3329b95ef674c7160b4"
-uuid = "4c82536e-c426-54e4-b420-14f461c4ed8b"
-version = "3.7.2+0"
-
 [[deps.NetworkOptions]]
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 version = "1.2.0"
@@ -1757,9 +1739,9 @@ version = "0.8.1+2"
 
 [[deps.OpenMPI_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"]
-git-tree-sha1 = "bfce6d523861a6c562721b262c0d1aaeead2647f"
+git-tree-sha1 = "2dace87e14256edb1dd0724ab7ba831c779b96bd"
 uuid = "fe0851c0-eecd-5654-98d4-656369965a5c"
-version = "5.0.5+0"
+version = "5.0.6+0"
 
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1780,15 +1762,9 @@ uuid = "91d4177d-7536-5919-b921-800302f37372"
 version = "1.3.3+0"
 
 [[deps.OrderedCollections]]
-git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5"
+git-tree-sha1 = "12f1439c4f986bb868acda6ea33ebc78e19b95ad"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
-version = "1.6.3"
-
-[[deps.P11Kit_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "2cd396108e178f3ae8dedbd8e938a18726ab2fbf"
-uuid = "c2071276-7c44-58a7-b746-946036e04d0a"
-version = "0.24.1+0"
+version = "1.7.0"
 
 [[deps.PCRE2_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -2117,9 +2093,9 @@ version = "0.1.0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
-git-tree-sha1 = "114a5eb8c060c9d801431985e9147832d5f3b845"
+git-tree-sha1 = "6f156f48d3603e8023e59917547b141218f2656d"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.63.0"
+version = "2.64.0"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -2560,9 +2536,9 @@ version = "2.13.5+0"
 
 [[deps.XSLT_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"]
-git-tree-sha1 = "a54ee957f4c86b526460a720dbc882fa5edcbefc"
+git-tree-sha1 = "7d1671acbe47ac88e981868a078bd6b4e27c5191"
 uuid = "aed1982a-8fda-507f-9586-7b0439959a61"
-version = "1.1.41+0"
+version = "1.1.42+0"
 
 [[deps.XZ_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -2578,15 +2554,15 @@ version = "1.8.6+0"
 
 [[deps.Xorg_libXau_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8"
+git-tree-sha1 = "2b0e27d52ec9d8d483e2ca0b72b3cb1a8df5c27a"
 uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec"
-version = "1.0.11+0"
+version = "1.0.11+1"
 
 [[deps.Xorg_libXdmcp_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7"
+git-tree-sha1 = "02054ee01980c90297412e4c809c8694d7323af3"
 uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05"
-version = "1.1.4+0"
+version = "1.1.4+1"
 
 [[deps.Xorg_libXext_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"]
@@ -2602,9 +2578,9 @@ version = "0.9.11+0"
 
 [[deps.Xorg_libpthread_stubs_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9"
+git-tree-sha1 = "fee57a273563e273f0f53275101cd41a8153517a"
 uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74"
-version = "0.1.1+0"
+version = "0.1.1+1"
 
 [[deps.Xorg_libxcb_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"]
@@ -2614,9 +2590,9 @@ version = "1.17.0+0"
 
 [[deps.Xorg_xtrans_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77"
+git-tree-sha1 = "b9ead2d2bdb27330545eb14234a2e300da61232e"
 uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10"
-version = "1.5.0+0"
+version = "1.5.0+1"
 
 [[deps.YAML]]
 deps = ["Base64", "Dates", "Printf", "StringEncodings"]
@@ -2701,10 +2677,10 @@ uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2"
 version = "1.4.0+0"
 
 [[deps.libzip_jll]]
-deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"]
-git-tree-sha1 = "668ac0297e6bd8f4d53dfdcd3ace71f2e00f4a35"
+deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "OpenSSL_jll", "XZ_jll", "Zlib_jll", "Zstd_jll"]
+git-tree-sha1 = "e797fa066eba69f4c0585ffbd81bc780b5118ce2"
 uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1"
-version = "1.11.1+0"
+version = "1.11.2+0"
 
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]

post_processing/ci_plots.jl

@@ -1067,10 +1067,7 @@ function make_plots(::Aquaplanet1MPlots, output_paths::Vector{<:AbstractString})
 end
 
 LESBoxPlots = Union{
-    Val{:les_rico_box},
-    Val{:les_dycoms_box},
-    Val{:les_bomex_box},
-    Val{:les_gabls_box},
+    Val{:les_box},
 }
 
 """
@@ -1114,21 +1111,7 @@ function make_plots(
         "cl",
         "clw",
         "cli",
-    ]
-    available_periods = ClimaAnalysis.available_periods(
-        simdirs[1];
-        short_name = short_names[1],
-        reduction,
-    )
-    # if "5m" in available_periods
-    #     period = "5m"
-    # elseif "10m" in available_periods
-    #     period = "10m"
-    # elseif "30m" in available_periods
-    #     period = "30m"
-    # elseif "1h" in available_periods
-    #     period = "1h"
-    # end
+    ] ∩ collect(keys(simdirs[1].vars))
 
     # Window average from instantaneous snapshots?
     function horizontal_average(var)