Bump julia to 1.9.4

CliMA · Nov 22, 2023 · f2f8e3a · f2f8e3a
1 parent bbb4867
commit f2f8e3a
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Showing 9 changed files with 47 additions and 43 deletions.
diff --git a/.buildkite/gpu_pipeline/pipeline.yml b/.buildkite/gpu_pipeline/pipeline.yml
@@ -1,7 +1,7 @@
 agents:
   queue: clima
   slurm_mem: 8G
-  modules: julia/1.9.3 cuda/julia-pref openmpi/4.1.5-mpitrampoline
+  modules: julia/1.9.4 cuda/julia-pref openmpi/4.1.5-mpitrampoline
 
 env:
   JULIA_CUDA_MEMORY_POOL: none

diff --git a/.buildkite/longruns/pipeline.yml b/.buildkite/longruns/pipeline.yml
@@ -1,7 +1,7 @@
 agents:
   queue: central
   slurm_mem_per_cpu: 8G
-  modules: julia/1.9.3 cuda/12.2 ucx/1.14.1_cuda-12.2 openmpi/4.1.5_cuda-12.2 nsight-systems/2023.3.1
+  modules: julia/1.9.4 cuda/12.2 ucx/1.14.1_cuda-12.2 openmpi/4.1.5_cuda-12.2 nsight-systems/2023.3.1
 
 env:
   JULIA_LOAD_PATH: "${JULIA_LOAD_PATH}:${BUILDKITE_BUILD_CHECKOUT_PATH}/.buildkite"

diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml
@@ -1,7 +1,7 @@
 agents:
   queue: central
   slurm_mem: 8G
-  modules: julia/1.9.3 cuda/12.2 ucx/1.14.1_cuda-12.2 openmpi/4.1.5_cuda-12.2 nsight-systems/2023.3.1
+  modules: julia/1.9.4 cuda/12.2 ucx/1.14.1_cuda-12.2 openmpi/4.1.5_cuda-12.2 nsight-systems/2023.3.1
 
 env:
   JULIA_LOAD_PATH: "${JULIA_LOAD_PATH}:${BUILDKITE_BUILD_CHECKOUT_PATH}/.buildkite"

diff --git a/.buildkite/scaling/pipeline.sh b/.buildkite/scaling/pipeline.sh
@@ -44,12 +44,12 @@ for i in "${!resolutions[@]}"; do
         folder_name="${resolution}_res_Float32"
         mkdir -p "$parent_folder/$folder_name"
         filepath="$parent_folder/$folder_name/$filename"
-            
+
         echo "job_id: sphere_held_suarez_${resolution}_res_rhoe_${nprocs}" > "$filepath"
         echo "forcing: held_suarez" >> "$filepath"
         echo "FLOAT_TYPE: $FT" >> "$filepath"
         echo "tracer_upwinding: none" >> "$filepath"
-            
+
         case "$resolution" in
             "low")
                 echo -e "$low_resolution_lines" >> "$filepath"
@@ -68,7 +68,7 @@ done
 cat << 'EOM'
 agents:
   queue: central
-  modules: julia/1.9.3 cuda/12.2 ucx/1.14.1_cuda-12.2 openmpi/4.1.5_cuda-12.2 hdf5/1.12.2-ompi415 nsight-systems/2023.3.1
+  modules: julia/1.9.4 cuda/12.2 ucx/1.14.1_cuda-12.2 openmpi/4.1.5_cuda-12.2 nsight-systems/2023.3.1
 
 env:
   JULIA_LOAD_PATH: "${JULIA_LOAD_PATH}:${BUILDKITE_BUILD_CHECKOUT_PATH}/.buildkite"
@@ -78,6 +78,11 @@ env:
   JULIA_MAX_NUM_PRECOMPILE_FILES: 100
   JULIA_CPU_TARGET: 'broadwell;skylake'
   SLURM_KILL_BAD_EXIT: 1
+  JULIA_NVTX_CALLBACKS: gc
+  JULIA_CUDA_MEMORY_POOL: none
+  JULIA_MPI_HAS_CUDA: "true"
+  MPITRAMPOLINE_LIB: "/groups/esm/software/MPIwrapper/ompi4.1.5_cuda-12.2/lib64/libmpiwrapper.so"
+  MPITRAMPOLINE_MPIEXEC: "/groups/esm/software/MPIwrapper/ompi4.1.5_cuda-12.2/bin/mpiwrapperexec"
 
 steps:
   - label: "init :computer:"
@@ -209,7 +214,7 @@ cat << EOM
   - wait: ~
     continue_on_failure: true
 
-  - label: ":broom: clean up config files" 
+  - label: ":broom: clean up config files"
     command: "rm -rf $parent_folder"
 
 EOM
diff --git a/.dev/Manifest.toml b/.dev/Manifest.toml
@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.9.3"
+julia_version = "1.9.4"
 manifest_format = "2.0"
 project_hash = "b280bcf3b481823c97fa1a62c1b5e65114b8fa18"
 
@@ -86,12 +86,12 @@ version = "1.0.42"
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
 uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
-version = "0.6.3"
+version = "0.6.4"
 
 [[deps.LibCURL_jll]]
 deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
 uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
-version = "7.84.0+0"
+version = "8.4.0+0"
 
 [[deps.LibGit2]]
 deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
@@ -100,7 +100,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 [[deps.LibSSH2_jll]]
 deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
 uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
-version = "1.10.2+0"
+version = "1.11.0+1"
 
 [[deps.Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
@@ -213,7 +213,7 @@ version = "1.2.13+0"
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-version = "1.48.0+0"
+version = "1.52.0+1"
 
 [[deps.p7zip_jll]]
 deps = ["Artifacts", "Libdl"]

diff --git a/README.md b/README.md
@@ -42,7 +42,7 @@ ClimaAtmos.jl is the atmosphere components of the CliMA software stack. We striv
 
 ## Installation instructions
 
-Recommended Julia: Stable release v1.9.3
+Recommended Julia: Stable release v1.9.4
 
 ClimaAtmos.jl is a [registered Julia package](https://julialang.org/packages/). To install
 

diff --git a/docs/Manifest.toml b/docs/Manifest.toml
@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.9.3"
+julia_version = "1.9.4"
 manifest_format = "2.0"
 project_hash = "1b7b7b12f210f5da35bb4f69ad563a64237fde09"
 
@@ -77,9 +77,9 @@ version = "1.1.1"
 
 [[deps.ArrayInterface]]
 deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0"
+git-tree-sha1 = "247efbccf92448be332d154d6ca56b9fcdd93c31"
 uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "7.5.1"
+version = "7.6.1"
 
     [deps.ArrayInterface.extensions]
     ArrayInterfaceBandedMatricesExt = "BandedMatrices"
@@ -270,7 +270,6 @@ version = "0.5.6"
 
 [[deps.ClimaCore]]
 deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "Memoize", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "WeakValueDicts"]
-git-tree-sha1 = "5c3809c5da88a3b01b8fe18558f50470fd3c33ed"
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
 version = "0.11.0"
 
@@ -919,12 +918,12 @@ uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
 uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
-version = "0.6.3"
+version = "0.6.4"
 
 [[deps.LibCURL_jll]]
 deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
 uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
-version = "7.84.0+0"
+version = "8.4.0+0"
 
 [[deps.LibGit2]]
 deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
@@ -933,7 +932,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 [[deps.LibSSH2_jll]]
 deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
 uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
-version = "1.10.2+0"
+version = "1.11.0+1"
 
 [[deps.Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
@@ -1715,7 +1714,7 @@ version = "5.8.0+0"
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-version = "1.48.0+0"
+version = "1.52.0+1"
 
 [[deps.p7zip_jll]]
 deps = ["Artifacts", "Libdl"]

diff --git a/examples/Manifest.toml b/examples/Manifest.toml
@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.9.3"
+julia_version = "1.9.4"
 manifest_format = "2.0"
 project_hash = "fb466347d1078c1d7eb1b19af42f7ee224fe2fab"
 
@@ -83,9 +83,9 @@ version = "1.1.1"
 
 [[deps.ArrayInterface]]
 deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0"
+git-tree-sha1 = "247efbccf92448be332d154d6ca56b9fcdd93c31"
 uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "7.5.1"
+version = "7.6.1"
 
     [deps.ArrayInterface.extensions]
     ArrayInterfaceBandedMatricesExt = "BandedMatrices"
@@ -1335,12 +1335,12 @@ version = "0.3.1"
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
 uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
-version = "0.6.3"
+version = "0.6.4"
 
 [[deps.LibCURL_jll]]
 deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
 uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
-version = "7.84.0+0"
+version = "8.4.0+0"
 
 [[deps.LibGit2]]
 deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
@@ -1349,7 +1349,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 [[deps.LibSSH2_jll]]
 deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
 uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
-version = "1.10.2+0"
+version = "1.11.0+1"
 
 [[deps.Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
@@ -1539,9 +1539,9 @@ version = "0.5.6"
 
 [[deps.MbedTLS]]
 deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"]
-git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f"
+git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf"
 uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
-version = "1.1.8"
+version = "1.1.9"
 
 [[deps.MbedTLS_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -1750,9 +1750,9 @@ version = "10.42.0+0"
 
 [[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99"
+git-tree-sha1 = "4e5be6bb265d33669f98eb55d2a57addd1eeb72c"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.29"
+version = "0.11.30"
 
 [[deps.PNGFiles]]
 deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"]
@@ -2872,7 +2872,7 @@ version = "1.1.6+0"
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-version = "1.48.0+0"
+version = "1.52.0+1"
 
 [[deps.p7zip_jll]]
 deps = ["Artifacts", "Libdl"]

diff --git a/perf/Manifest.toml b/perf/Manifest.toml
@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.9.3"
+julia_version = "1.9.4"
 manifest_format = "2.0"
 project_hash = "551bce7c2dee7d8c00ba5b736c87527020a6054b"
 
@@ -83,9 +83,9 @@ version = "1.1.1"
 
 [[deps.ArrayInterface]]
 deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0"
+git-tree-sha1 = "247efbccf92448be332d154d6ca56b9fcdd93c31"
 uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "7.5.1"
+version = "7.6.1"
 
     [deps.ArrayInterface.extensions]
     ArrayInterfaceBandedMatricesExt = "BandedMatrices"
@@ -1393,12 +1393,12 @@ version = "0.2.0"
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
 uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
-version = "0.6.3"
+version = "0.6.4"
 
 [[deps.LibCURL_jll]]
 deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
 uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
-version = "7.84.0+0"
+version = "8.4.0+0"
 
 [[deps.LibGit2]]
 deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
@@ -1407,7 +1407,7 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 [[deps.LibSSH2_jll]]
 deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
 uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
-version = "1.10.2+0"
+version = "1.11.0+1"
 
 [[deps.Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
@@ -1597,9 +1597,9 @@ version = "0.5.6"
 
 [[deps.MbedTLS]]
 deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"]
-git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f"
+git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf"
 uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
-version = "1.1.8"
+version = "1.1.9"
 
 [[deps.MbedTLS_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -1802,9 +1802,9 @@ version = "10.42.0+0"
 
 [[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99"
+git-tree-sha1 = "4e5be6bb265d33669f98eb55d2a57addd1eeb72c"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.29"
+version = "0.11.30"
 
 [[deps.PNGFiles]]
 deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"]
@@ -2972,7 +2972,7 @@ version = "1.1.6+0"
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-version = "1.48.0+0"
+version = "1.52.0+1"
 
 [[deps.p7zip_jll]]
 deps = ["Artifacts", "Libdl"]