Code

Add diagnostic module#2064

Code

Merged

bors[bot] merged 66 commits intomainCliMA/ClimaAtmos.jl:mainfrom gb/diagnostics_readyCliMA/ClimaAtmos.jl:gb/diagnostics_readyCopy head branch name to clipboardSep 25, 2023

+2,731-25

Commits

Commits on Sep 25, 2023

• Add DiagnosticVariable

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• Add ALL_DIAGNOSTICS

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• Add ScheduledDiagnosticIterations

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• Add reduction_identities.jl

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• Add ScheduledDiagnosticTime

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• Add more constructors for ScheduledDiagnostics

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• Add get_callbacks_from_diagnostics

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• Add HDF5Writer

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• Add default_diagnostics.jl

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• Add design note of pre_output_hook!

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• Add basic support for diagnostics

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• Add constructor for SDTime from SDIterations

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• Add descriptive_name for ScheduledDiagnostics

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• Use descriptive_name for filenames and errors

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• Add automatically generated list of diagnostics

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• Capture the 'average' reduction in naming

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• Add helper function for diagnostics

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• Add example and docs on model-dependent diagnostic

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• Make Diagnostics a submodule

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• Fix short/long names in documentation

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• Rename compute_from_integrator

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• Switch deepcopies to copies

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• Do not parametrize string in DiagnosticVariable

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• Use more proper English

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• Add name field to ScheduledDiagnostics

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• Add numeric values to error messages

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• Do not use Val for functions

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• Use push! instead of append!

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• Add diagnostic accumulators

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• Refactor produce_common_diagnostic_function

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• Add flag to output default diagnostics

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• Accept nothing as pre_output_hook!

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• Add YAML reader for diagnostics

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• Clean up daily/hourly functions

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• Change name to output_name in diagnostics

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• Add preliminary support to writing to NetCDF

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• Fix argument to compute_relative_humidty

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• Pass state, cache, and time to diagnostics

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• add core diagnostics

  

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• Fix diagnostics, and store them correctly

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• Remove newlines between docstrings and functions

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• Avoid unnecessary specialization

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• Move ClimaCore patch outside of abbreviations.jl

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• Use abbreviations.jl instead of definining our own

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• Print error values in seconds instead of iteration

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• Make ALL_DIAGNOSTICS an implementation detail

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• Avoid allocations of diagnostics in callbacks

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• Fix element type for more complex Fields

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• Allow accumulators to take Vector values

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• Modify and add some core diagnostics

  

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• Remove allocation in drag_vector

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• Clean up radiation_diagnostics.jl

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• Fix reduction name in suffix

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• Add standard names and long ones for ScheduledDiag

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• Reword "get_" functions

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• Add some default diagnostics

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• Add timing information to diagnostics

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• Reduce inference time in SciMLBase.CallbackSet

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• Remove Any[]s

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• Move to orchestrate_callbacks

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• Make timestep evenly divide day in CI

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• Update link to diagnostic table

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• Add diagnostics to one CI model

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• Add diagnostic flamegraph

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• Move import of Diagnostics

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• Add return to accumulate to help inference

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