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Update dependencies #2141

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merged 3 commits into from
Sep 22, 2023
Merged

Update dependencies #2141

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e25e6bb
Update dependencies
charleskawczynski Sep 21, 2023
cc90930
Bump ref counter
charleskawczynski Sep 22, 2023
b96f5d6
Bump allocation limit
charleskawczynski Sep 22, 2023
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25 changes: 17 additions & 8 deletions docs/Manifest.toml
View file
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Original file line number Diff line number Diff line change
Expand Up @@ -265,10 +265,10 @@ uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
version = "0.10.51"

[[deps.ClimaTimeSteppers]]
deps = ["CUDA", "ClimaComms", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "SciMLBase", "StaticArrays"]
git-tree-sha1 = "54b602435b0107b6c2dfe7664e0f7ff5fc78fb91"
deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
git-tree-sha1 = "70b0118d12a137550f1626bf4c20ebb66a45f2e0"
uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
version = "0.7.7"
version = "0.7.8"

[[deps.CloseOpenIntervals]]
deps = ["Static", "StaticArrayInterface"]
Expand Down Expand Up @@ -341,6 +341,11 @@ git-tree-sha1 = "52cb3ec90e8a8bea0e62e275ba577ad0f74821f7"
uuid = "ed09eef8-17a6-5b46-8889-db040fac31e3"
version = "0.3.2"

[[deps.ConcreteStructs]]
git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34"
uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471"
version = "0.2.3"

[[deps.ConstructionBase]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9"
Expand Down Expand Up @@ -960,24 +965,28 @@ uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125"
version = "2.5.2"

[[deps.LinearSolve]]
deps = ["ArrayInterface", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
git-tree-sha1 = "69cbd612e6e67ba2f8121bc8725bc9d04d803599"
deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
git-tree-sha1 = "dd70543d3c4fc712c14d67e2d35b90817e8bc37d"
uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
version = "2.5.1"
version = "2.6.0"

[deps.LinearSolve.extensions]
LinearSolveBlockDiagonalsExt = "BlockDiagonals"
LinearSolveCUDAExt = "CUDA"
LinearSolveHYPREExt = "HYPRE"
LinearSolveIterativeSolversExt = "IterativeSolvers"
LinearSolveKernelAbstractionsExt = "KernelAbstractions"
LinearSolveKrylovKitExt = "KrylovKit"
LinearSolveMKLExt = "MKL_jll"
LinearSolveMetalExt = "Metal"
LinearSolvePardisoExt = "Pardiso"

[deps.LinearSolve.weakdeps]
BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0"
CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771"
IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153"
KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77"
MKL_jll = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
Metal = "dde4c033-4e86-420c-a63e-0dd931031962"
Expand Down Expand Up @@ -1182,9 +1191,9 @@ version = "4.1.5+0"

[[deps.OpenSSL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "e78db7bd5c26fc5a6911b50a47ee302219157ea8"
git-tree-sha1 = "ceeda72c9fd6bbebc4f4f598560789145a8b6c4c"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
version = "3.0.10+0"
version = "3.0.11+0"

[[deps.OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
Expand Down
21 changes: 15 additions & 6 deletions examples/Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -334,10 +334,10 @@ uuid = "c8b6d40d-e815-466f-95ae-c48aefa668fa"
version = "0.7.1"

[[deps.ClimaTimeSteppers]]
deps = ["CUDA", "ClimaComms", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "SciMLBase", "StaticArrays"]
git-tree-sha1 = "54b602435b0107b6c2dfe7664e0f7ff5fc78fb91"
deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
git-tree-sha1 = "70b0118d12a137550f1626bf4c20ebb66a45f2e0"
uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
version = "0.7.7"
version = "0.7.8"

[[deps.CloseOpenIntervals]]
deps = ["Static", "StaticArrayInterface"]
Expand Down Expand Up @@ -429,6 +429,11 @@ git-tree-sha1 = "52cb3ec90e8a8bea0e62e275ba577ad0f74821f7"
uuid = "ed09eef8-17a6-5b46-8889-db040fac31e3"
version = "0.3.2"

[[deps.ConcreteStructs]]
git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34"
uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471"
version = "0.2.3"

[[deps.ConcurrentUtilities]]
deps = ["Serialization", "Sockets"]
git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e"
Expand Down Expand Up @@ -1389,24 +1394,28 @@ uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125"
version = "2.5.2"

[[deps.LinearSolve]]
deps = ["ArrayInterface", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
git-tree-sha1 = "69cbd612e6e67ba2f8121bc8725bc9d04d803599"
deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
git-tree-sha1 = "dd70543d3c4fc712c14d67e2d35b90817e8bc37d"
uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
version = "2.5.1"
version = "2.6.0"

[deps.LinearSolve.extensions]
LinearSolveBlockDiagonalsExt = "BlockDiagonals"
LinearSolveCUDAExt = "CUDA"
LinearSolveHYPREExt = "HYPRE"
LinearSolveIterativeSolversExt = "IterativeSolvers"
LinearSolveKernelAbstractionsExt = "KernelAbstractions"
LinearSolveKrylovKitExt = "KrylovKit"
LinearSolveMKLExt = "MKL_jll"
LinearSolveMetalExt = "Metal"
LinearSolvePardisoExt = "Pardiso"

[deps.LinearSolve.weakdeps]
BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0"
CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771"
IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153"
KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77"
MKL_jll = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
Metal = "dde4c033-4e86-420c-a63e-0dd931031962"
Expand Down
21 changes: 15 additions & 6 deletions perf/Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -345,10 +345,10 @@ uuid = "c8b6d40d-e815-466f-95ae-c48aefa668fa"
version = "0.7.1"

[[deps.ClimaTimeSteppers]]
deps = ["CUDA", "ClimaComms", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "SciMLBase", "StaticArrays"]
git-tree-sha1 = "54b602435b0107b6c2dfe7664e0f7ff5fc78fb91"
deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
git-tree-sha1 = "70b0118d12a137550f1626bf4c20ebb66a45f2e0"
uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
version = "0.7.7"
version = "0.7.8"

[[deps.CloseOpenIntervals]]
deps = ["Static", "StaticArrayInterface"]
Expand Down Expand Up @@ -440,6 +440,11 @@ git-tree-sha1 = "52cb3ec90e8a8bea0e62e275ba577ad0f74821f7"
uuid = "ed09eef8-17a6-5b46-8889-db040fac31e3"
version = "0.3.2"

[[deps.ConcreteStructs]]
git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34"
uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471"
version = "0.2.3"

[[deps.ConcurrentUtilities]]
deps = ["Serialization", "Sockets"]
git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e"
Expand Down Expand Up @@ -1441,24 +1446,28 @@ uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125"
version = "2.5.2"

[[deps.LinearSolve]]
deps = ["ArrayInterface", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
git-tree-sha1 = "69cbd612e6e67ba2f8121bc8725bc9d04d803599"
deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
git-tree-sha1 = "dd70543d3c4fc712c14d67e2d35b90817e8bc37d"
uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
version = "2.5.1"
version = "2.6.0"

[deps.LinearSolve.extensions]
LinearSolveBlockDiagonalsExt = "BlockDiagonals"
LinearSolveCUDAExt = "CUDA"
LinearSolveHYPREExt = "HYPRE"
LinearSolveIterativeSolversExt = "IterativeSolvers"
LinearSolveKernelAbstractionsExt = "KernelAbstractions"
LinearSolveKrylovKitExt = "KrylovKit"
LinearSolveMKLExt = "MKL_jll"
LinearSolveMetalExt = "Metal"
LinearSolvePardisoExt = "Pardiso"

[deps.LinearSolve.weakdeps]
BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0"
CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771"
IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153"
KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77"
MKL_jll = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
Metal = "dde4c033-4e86-420c-a63e-0dd931031962"
Expand Down
6 changes: 3 additions & 3 deletions perf/flame.jl
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Original file line number Diff line number Diff line change
Expand Up @@ -54,10 +54,10 @@ allocs = @allocated SciMLBase.step!(integrator)
@info "`allocs ($job_id)`: $(allocs)"

allocs_limit = Dict()
allocs_limit["flame_perf_target"] = 4256
allocs_limit["flame_perf_target_tracers"] = 203888
allocs_limit["flame_perf_target"] = 7968
allocs_limit["flame_perf_target_tracers"] = 207600
allocs_limit["flame_perf_target_edmfx"] = 274832
allocs_limit["flame_perf_target_diagnostic_edmfx"] = 662032
allocs_limit["flame_perf_target_diagnostic_edmfx"] = 748176
allocs_limit["flame_perf_target_edmf"] = 12031972048
allocs_limit["flame_perf_target_threaded"] = 6175664
allocs_limit["flame_perf_target_callbacks"] = 45111592
Expand Down
2 changes: 1 addition & 1 deletion regression_tests/ref_counter.jl
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Original file line number Diff line number Diff line change
@@ -1 +1 @@
127
128
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