Merge pull request #86 from CliMA/ne/slurm_args

Use dict of slurm args instead of individual args

experiments/surface_fluxes_perfect_model/Manifest.toml

@@ -42,10 +42,10 @@ weakdeps = ["StaticArrays"]
     AdaptStaticArraysExt = "StaticArrays"
 
 [[deps.AliasTables]]
-deps = ["Random"]
-git-tree-sha1 = "07591db28451b3e45f4c0088a2d5e986ae5aa92d"
+deps = ["PtrArrays", "Random"]
+git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff"
 uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8"
-version = "1.1.1"
+version = "1.1.3"
 
 [[deps.Animations]]
 deps = ["Colors"]
@@ -167,9 +167,15 @@ version = "0.11.10"
 
 [[deps.Cairo_jll]]
 deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
-git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf"
+git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd"
 uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a"
-version = "1.18.0+1"
+version = "1.18.0+2"
+
+[[deps.Calculus]]
+deps = ["LinearAlgebra"]
+git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad"
+uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9"
+version = "0.5.1"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra"]
@@ -219,9 +225,9 @@ version = "0.4.0"
 
 [[deps.ColorSchemes]]
 deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
-git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129"
+git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2"
 uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
-version = "3.24.0"
+version = "3.25.0"
 
 [[deps.ColorTypes]]
 deps = ["FixedPointNumbers", "Random"]
@@ -241,9 +247,9 @@ weakdeps = ["SpecialFunctions"]
 
 [[deps.Colors]]
 deps = ["ColorTypes", "FixedPointNumbers", "Reexport"]
-git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a"
+git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0"
 uuid = "5ae59095-9a9b-59fe-a467-6f913c188581"
-version = "0.12.10"
+version = "0.12.11"
 
 [[deps.Combinatorics]]
 git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860"
@@ -258,9 +264,9 @@ version = "0.3.0"
 
 [[deps.Compat]]
 deps = ["TOML", "UUIDs"]
-git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80"
+git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "4.14.0"
+version = "4.15.0"
 weakdeps = ["Dates", "LinearAlgebra"]
 
     [deps.Compat.extensions]
@@ -362,6 +368,12 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
 uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
 version = "1.6.0"
 
+[[deps.DualNumbers]]
+deps = ["Calculus", "NaNMath", "SpecialFunctions"]
+git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566"
+uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74"
+version = "0.6.8"
+
 [[deps.EarCut_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "e3290f2d49e661fbd94046d7e3726ffcb2d41053"
@@ -416,9 +428,9 @@ version = "3.3.10+0"
 
 [[deps.FastGaussQuadrature]]
 deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"]
-git-tree-sha1 = "58d83dd5a78a36205bdfddb82b1bb67682e64487"
+git-tree-sha1 = "0f478d8bad6f52573fb7658a263af61f3d96e43a"
 uuid = "442a2c76-b920-505d-bb47-c5924d526838"
-version = "0.4.9"
+version = "0.5.1"
 
 [[deps.FileIO]]
 deps = ["Pkg", "Requires", "UUIDs"]
@@ -442,13 +454,14 @@ version = "0.9.21"
 uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
 [[deps.FillArrays]]
-deps = ["LinearAlgebra", "Random"]
-git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef"
+deps = ["LinearAlgebra"]
+git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "1.7.0"
-weakdeps = ["SparseArrays", "Statistics"]
+version = "1.11.0"
+weakdeps = ["PDMats", "SparseArrays", "Statistics"]
 
     [deps.FillArrays.extensions]
+    FillArraysPDMatsExt = "PDMats"
     FillArraysSparseArraysExt = "SparseArrays"
     FillArraysStatisticsExt = "Statistics"
 
@@ -470,9 +483,9 @@ version = "2.23.1"
 
 [[deps.FixedPointNumbers]]
 deps = ["Statistics"]
-git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc"
+git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172"
 uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93"
-version = "0.8.4"
+version = "0.8.5"
 
 [[deps.Fontconfig_jll]]
 deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"]
@@ -524,10 +537,10 @@ deps = ["Random"]
 uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
 
 [[deps.GaussianRandomFields]]
-deps = ["Arpack", "FFTW", "FastGaussQuadrature", "LinearAlgebra", "RecipesBase", "SpecialFunctions", "Statistics"]
-git-tree-sha1 = "d9c335f2c06424029b2addf9abf602e0feb2f53e"
+deps = ["Arpack", "FFTW", "FastGaussQuadrature", "LinearAlgebra", "Random", "RecipesBase", "SpecialFunctions", "Statistics", "StatsBase"]
+git-tree-sha1 = "055849d7a602c31eda477a0b0b86c9473a3e4fb9"
 uuid = "e4b2fa32-6e09-5554-b718-106ed5adafe9"
-version = "2.1.6"
+version = "2.2.4"
 
 [[deps.GeoInterface]]
 deps = ["Extents"]
@@ -549,9 +562,9 @@ version = "0.21.0+0"
 
 [[deps.Glib_jll]]
 deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"]
-git-tree-sha1 = "359a1ba2e320790ddbe4ee8b4d54a305c0ea2aff"
+git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba"
 uuid = "7746bdde-850d-59dc-9ae8-88ece973131d"
-version = "2.80.0+0"
+version = "2.80.2+0"
 
 [[deps.Graphics]]
 deps = ["Colors", "LinearAlgebra", "NaNMath"]
@@ -582,6 +595,12 @@ git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3"
 uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566"
 version = "2.8.1+1"
 
+[[deps.HypergeometricFunctions]]
+deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
+git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685"
+uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
+version = "0.3.23"
+
 [[deps.ImageAxes]]
 deps = ["AxisArrays", "ImageBase", "ImageCore", "Reexport", "SimpleTraits"]
 git-tree-sha1 = "2e4520d67b0cef90865b3ef727594d2a58e0e1f8"
@@ -602,9 +621,9 @@ version = "0.10.2"
 
 [[deps.ImageIO]]
 deps = ["FileIO", "IndirectArrays", "JpegTurbo", "LazyModules", "Netpbm", "OpenEXR", "PNGFiles", "QOI", "Sixel", "TiffImages", "UUIDs"]
-git-tree-sha1 = "bca20b2f5d00c4fbc192c3212da8fa79f4688009"
+git-tree-sha1 = "437abb322a41d527c197fa800455f79d414f0a3c"
 uuid = "82e4d734-157c-48bb-816b-45c225c6df19"
-version = "0.6.7"
+version = "0.6.8"
 
 [[deps.ImageMetadata]]
 deps = ["AxisArrays", "ImageAxes", "ImageBase", "ImageCore"]
@@ -678,20 +697,10 @@ weakdeps = ["Random", "RecipesBase", "Statistics"]
     IntervalSetsRecipesBaseExt = "RecipesBase"
     IntervalSetsStatisticsExt = "Statistics"
 
-[[deps.InverseFunctions]]
-deps = ["Test"]
-git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4"
-uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
-version = "0.1.14"
-weakdeps = ["Dates"]
-
-    [deps.InverseFunctions.extensions]
-    DatesExt = "Dates"
-
 [[deps.IrrationalConstants]]
-git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151"
+git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
 uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
-version = "0.1.1"
+version = "0.2.2"
 
 [[deps.Isoband]]
 deps = ["isoband_jll"]
@@ -735,15 +744,15 @@ version = "0.1.5"
 
 [[deps.JpegTurbo_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23"
+git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637"
 uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8"
-version = "3.0.2+0"
+version = "3.0.3+0"
 
 [[deps.KernelAbstractions]]
 deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "ed7167240f40e62d97c1f5f7735dea6de3cc5c49"
+git-tree-sha1 = "db02395e4c374030c53dc28f3c1d33dec35f7272"
 uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
-version = "0.9.18"
+version = "0.9.19"
 
     [deps.KernelAbstractions.extensions]
     EnzymeExt = "EnzymeCore"
@@ -866,15 +875,15 @@ version = "1.17.0+0"
 
 [[deps.Libmount_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "4b683b19157282f50bfd5dcaa2efe5295814ea22"
+git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e"
 uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
-version = "2.40.0+0"
+version = "2.40.1+0"
 
 [[deps.Libuuid_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "27fd5cc10be85658cacfe11bb81bee216af13eda"
+git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807"
 uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700"
-version = "2.40.0+0"
+version = "2.40.1+0"
 
 [[deps.LightXML]]
 deps = ["Libdl", "XML2_jll"]
@@ -1111,10 +1120,10 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15"
 version = "10.42.0+1"
 
 [[deps.PDMats]]
-deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse", "Test"]
-git-tree-sha1 = "95a4038d1011dfdbde7cecd2ad0ac411e53ab1bc"
+deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
+git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.10.1"
+version = "0.11.31"
 
 [[deps.PNGFiles]]
 deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"]
@@ -1160,9 +1169,9 @@ version = "0.4.21"
 
 [[deps.Pixman_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"]
-git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87"
+git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b"
 uuid = "30392449-352a-5448-841d-b1acce4e97dc"
-version = "0.42.2+0"
+version = "0.43.4+0"
 
 [[deps.Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
@@ -1237,6 +1246,11 @@ git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad"
 uuid = "92933f4c-e287-5a05-a399-4b506db050ca"
 version = "1.10.0"
 
+[[deps.PtrArrays]]
+git-tree-sha1 = "077664975d750757f30e739c870fbbdc01db7913"
+uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d"
+version = "1.1.0"
+
 [[deps.QOI]]
 deps = ["ColorTypes", "FileIO", "FixedPointNumbers"]
 git-tree-sha1 = "18e8f4d1426e965c7b532ddd260599e1510d26ce"
@@ -1346,6 +1360,12 @@ version = "3.2.0+0"
 uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
 version = "0.7.0"
 
+[[deps.SIMD]]
+deps = ["PrecompileTools"]
+git-tree-sha1 = "2803cab51702db743f3fda07dd1745aadfbf43bd"
+uuid = "fdea26ae-647d-5447-a871-4b548cad5224"
+version = "3.5.0"
+
 [[deps.Scratch]]
 deps = ["Dates"]
 git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386"
@@ -1435,9 +1455,9 @@ version = "1.10.0"
 
 [[deps.SpecialFunctions]]
 deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
-git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d"
+git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14"
 uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
-version = "2.3.1"
+version = "2.4.0"
 weakdeps = ["ChainRulesCore"]
 
     [deps.SpecialFunctions.extensions]
@@ -1478,15 +1498,23 @@ version = "1.7.0"
 
 [[deps.StatsBase]]
 deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
-git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916"
+git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21"
 uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
-version = "0.33.21"
+version = "0.34.3"
 
 [[deps.StatsFuns]]
-deps = ["ChainRulesCore", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
-git-tree-sha1 = "5950925ff997ed6fb3e985dcce8eb1ba42a0bbe7"
+deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
+git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a"
 uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
-version = "0.9.18"
+version = "1.3.1"
+
+    [deps.StatsFuns.extensions]
+    StatsFunsChainRulesCoreExt = "ChainRulesCore"
+    StatsFunsInverseFunctionsExt = "InverseFunctions"
+
+    [deps.StatsFuns.weakdeps]
+    ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
+    InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112"
 
 [[deps.StringEncodings]]
 deps = ["Libiconv_jll"]
@@ -1574,15 +1602,15 @@ weakdeps = ["ClimaParams"]
     CreateParametersExt = "ClimaParams"
 
 [[deps.TiffImages]]
-deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"]
-git-tree-sha1 = "34cc045dd0aaa59b8bbe86c644679bc57f1d5bd0"
+deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "SIMD", "UUIDs"]
+git-tree-sha1 = "bc7fd5c91041f44636b2c134041f7e5263ce58ae"
 uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69"
-version = "0.6.8"
+version = "0.10.0"
 
 [[deps.TranscodingStreams]]
-git-tree-sha1 = "71509f04d045ec714c4748c785a59045c3736349"
+git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.10.7"
+version = "0.10.8"
 weakdeps = ["Random", "Test"]
 
     [deps.TranscodingStreams.extensions]

src/ClimaCalibrate.jl

@@ -2,6 +2,7 @@ module ClimaCalibrate
 
 include("ekp_interface.jl")
 include("model_interface.jl")
+include("slurm.jl")
 include("backends.jl")
 include("emulate_sample.jl")